Cp4.1LG03g08090 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG03g08090
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionPentatricopeptide repeat-containing protein
LocationCp4.1LG03 : 2998829 .. 3000091 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
TTCGCACCATATTTCATTATCAGGGGATATGCTTCGAGCGAATCTCCACAAGATGCCATTTCGGTATTTGGGGAAATGCGAAGACGAGGAATCAGACCCAATAACCTCACTTACCCCTTCCTTCTCAAGGCCTGTGCGACTCTCGCGGCGCTACAAGAAGGTAAGCAGTTTCATGCTGTTGCCATAAAGTGTGGTTTGGATTTAGATGTTTATGTTCGGAACACTCTGATTAATTTCTATGGGTCCTGCAAAAGAATGTCTGGTGCACGGAAGGTGTTCGACGAAATGTCTGAAAGAACCTTAGTTTCGTGGAATGCGATTATTACAGCGTGTGTTGAGAATTTATGCTTTGATGAAGCGATTGACTACTTTTTGAAAATGGGAAACCATGGTTTTGAGCCGGATGAAACCACAATGGTGGTTATATTATCTGCTTGTGCAGAGCTTGGTAACTTGAGCTTAGGGAGATGGGTTCATTCTCAAGTGGTGGGAAGAGGGATGGTTTGGAATGTTCAATTGGGCACTGCCTTCGTCGACATGTATGCTAAATCTGGTGATGTGGGATGTGCTAGGCTTGTATTCAATTCTTTGAAACAGAGAAGTGTATGGCCATGGAGTGCAATGATTTTGGGGCTAGCCCAACATGGATTTGCCAACGAAGCCATTGAACTTTTCACAAATATGATGAGCTCCTCTGTTGTCCCTAACTATGTCACTTTCATTGGTGTCCTATGTGCCTGCAGCCATGCCGGATTGGTGGATGAAGGCTACCACTACTTCAACATTATGGAGAGAGTTTATGGGATTAAGCCAATGATGATACATTACGGATCAATGGTGGACATCTTAGGACGTGCAGGTCGTGTCAAAGAGGCTTATGAGTTCATCATGAGCATGCATGTGCAGCCTGATCCGATCGTGTGGAGGACATTGCTAAGTGCATGCAGTGCTCGTGATGTTGATGGTGGGGCTCAGGTTGCAGAGGAGGCAAGAAAGAGACTCCTTGAGCTGGAGCCGAAGAGGGGCGGAAATGTGGTGATGGTTGCGAACATGTTTGCTGAAGTTGGGATGTGGAAGCAGGCAGCAGATTGCCGGAGGACGATGAAAGATAGAGGAATCAAAAAGATGGCTGGGGAGAGTTGCATCGAAGTGGGTGGCTCCTTGTGTAAATTCTTCTCGGGTTTTAATGCTCGAGCTGATTCTCATGGCATTTACGATTTGCTTGATGGATTGGACCTGCATATGCAAATCATAAACTTCTAA

mRNA sequence

TTCGCACCATATTTCATTATCAGGGGATATGCTTCGAGCGAATCTCCACAAGATGCCATTTCGGTATTTGGGGAAATGCGAAGACGAGGAATCAGACCCAATAACCTCACTTACCCCTTCCTTCTCAAGGCCTGTGCGACTCTCGCGGCGCTACAAGAAGAGCTTGGTAACTTGAGCTTAGGGAGATGGGTTCATTCTCAAGTGGTGGGAAGAGGGATGGTTTGGAATGTTCAATTGGGCACTGCCTTCGTCGACATGTATGCTAAATCTGGTGATGTGGGATGTGCTAGGCTTGTATTCAATTCTTTGAAACAGAGAAGTGTATGGCCATGGAGTGCAATGATTTTGGGGCTAGCCCAACATGGATTTGCCAACGAAGCCATTGAACTTTTCACAAATATGATGAGCTCCTCTGTTGTCCCTAACTATGTCACTTTCATTGGTGTCCTATGTGCCTGCAGCCATGCCGGATTGGTGGATGAAGGCTACCACTACTTCAACATTATGGAGAGAGTTTATGGGATTAAGCCAATGATGATACATTACGGATCAATGGTGGACATCTTAGGACGTGCAGGTCGTGTCAAAGAGGCTTATGAGTTCATCATGAGCATGCATGTGCAGCCTGATCCGATCGTGTGGAGGACATTGCTAAGTGCATGCAGTGCTCGTGATGTTGATGGTGGGGCTCAGGTTGCAGAGGAGGCAAGAAAGAGACTCCTTGAGCTGGAGCCGAAGAGGGGCGGAAATGTGGTGATGGTTGCGAACATGTTTGCTGAAGTTGGGATGTGGAAGCAGGCAGCAGATTGCCGGAGGACGATGAAAGATAGAGGAATCAAAAAGATGGCTGGGGAGAGTTGCATCGAAGTGGGTGGCTCCTTGTGTAAATTCTTCTCGGGTTTTAATGCTCGAGCTGATTCTCATGGCATTTACGATTTGCTTGATGGATTGGACCTGCATATGCAAATCATAAACTTCTAA

Coding sequence (CDS)

TTCGCACCATATTTCATTATCAGGGGATATGCTTCGAGCGAATCTCCACAAGATGCCATTTCGGTATTTGGGGAAATGCGAAGACGAGGAATCAGACCCAATAACCTCACTTACCCCTTCCTTCTCAAGGCCTGTGCGACTCTCGCGGCGCTACAAGAAGAGCTTGGTAACTTGAGCTTAGGGAGATGGGTTCATTCTCAAGTGGTGGGAAGAGGGATGGTTTGGAATGTTCAATTGGGCACTGCCTTCGTCGACATGTATGCTAAATCTGGTGATGTGGGATGTGCTAGGCTTGTATTCAATTCTTTGAAACAGAGAAGTGTATGGCCATGGAGTGCAATGATTTTGGGGCTAGCCCAACATGGATTTGCCAACGAAGCCATTGAACTTTTCACAAATATGATGAGCTCCTCTGTTGTCCCTAACTATGTCACTTTCATTGGTGTCCTATGTGCCTGCAGCCATGCCGGATTGGTGGATGAAGGCTACCACTACTTCAACATTATGGAGAGAGTTTATGGGATTAAGCCAATGATGATACATTACGGATCAATGGTGGACATCTTAGGACGTGCAGGTCGTGTCAAAGAGGCTTATGAGTTCATCATGAGCATGCATGTGCAGCCTGATCCGATCGTGTGGAGGACATTGCTAAGTGCATGCAGTGCTCGTGATGTTGATGGTGGGGCTCAGGTTGCAGAGGAGGCAAGAAAGAGACTCCTTGAGCTGGAGCCGAAGAGGGGCGGAAATGTGGTGATGGTTGCGAACATGTTTGCTGAAGTTGGGATGTGGAAGCAGGCAGCAGATTGCCGGAGGACGATGAAAGATAGAGGAATCAAAAAGATGGCTGGGGAGAGTTGCATCGAAGTGGGTGGCTCCTTGTGTAAATTCTTCTCGGGTTTTAATGCTCGAGCTGATTCTCATGGCATTTACGATTTGCTTGATGGATTGGACCTGCATATGCAAATCATAAACTTCTAA

Protein sequence

FAPYFIIRGYASSESPQDAISVFGEMRRRGIRPNNLTYPFLLKACATLAALQEELGNLSLGRWVHSQVVGRGMVWNVQLGTAFVDMYAKSGDVGCARLVFNSLKQRSVWPWSAMILGLAQHGFANEAIELFTNMMSSSVVPNYVTFIGVLCACSHAGLVDEGYHYFNIMERVYGIKPMMIHYGSMVDILGRAGRVKEAYEFIMSMHVQPDPIVWRTLLSACSARDVDGGAQVAEEARKRLLELEPKRGGNVVMVANMFAEVGMWKQAADCRRTMKDRGIKKMAGESCIEVGGSLCKFFSGFNARADSHGIYDLLDGLDLHMQIINF
Homology
[Close]
BLAST of Cp4.1LG03g08090 vs. Swiss-Prot
Match: PP188_ARATH (Pentatricopeptide repeat-containing protein At2g36730 OS=Arabidopsis thaliana GN=PCMP-E44 PE=3 SV=1)

HSP 1 Score: 344.0 bits (881), Expect = 1.8e-93
Identity = 171/294 (58.16%), Postives = 217/294 (73.81%), Query Frame = 1 

Query: 23  FGEMRRRGIRPNNLTYPFLLKACATLAALQEELGNLSLGRWVHSQVVGRGMVWNVQLGTA 82
           F EM  +   P+  T   LL AC          GNLSLG+ VHSQV+ R +  N +LGTA
Sbjct: 202 FCEMIGKRFCPDETTMVVLLSACG---------GNLSLGKLVHSQVMVRELELNCRLGTA 261

Query: 83  FVDMYAKSGDVGCARLVFNSLKQRSVWPWSAMILGLAQHGFANEAIELFTNMMS-SSVVP 142
            VDMYAKSG +  ARLVF  +  ++VW WSAMI+GLAQ+GFA EA++LF+ MM  SSV P
Sbjct: 262 LVDMYAKSGGLEYARLVFERMVDKNVWTWSAMIVGLAQYGFAEEALQLFSKMMKESSVRP 321

Query: 143 NYVTFIGVLCACSHAGLVDEGYHYFNIMERVYGIKPMMIHYGSMVDILGRAGRVKEAYEF 202
           NYVTF+GVLCACSH GLVD+GY YF+ ME+++ IKPMMIHYG+MVDILGRAGR+ EAY+F
Sbjct: 322 NYVTFLGVLCACSHTGLVDDGYKYFHEMEKIHKIKPMMIHYGAMVDILGRAGRLNEAYDF 381

Query: 203 IMSMHVQPDPIVWRTLLSACSARDVDGGAQVAEEARKRLLELEPKRGGNVVMVANMFAEV 262
           I  M  +PD +VWRTLLSACS    +    + E+ +KRL+ELEPKR GN+V+VAN FAE 
Sbjct: 382 IKKMPFEPDAVVWRTLLSACSIHHDEDDEGIGEKVKKRLIELEPKRSGNLVIVANRFAEA 441

Query: 263 GMWKQAADCRRTMKDRGIKKMAGESCIEVGGSLCKFFSGFNARADSHGIYDLLD 316
            MW +AA+ RR MK+  +KK+AGESC+E+GGS  +FFSG++ R++   IY+LLD
Sbjct: 442 RMWAEAAEVRRVMKETKMKKIAGESCLELGGSFHRFFSGYDPRSEYVSIYELLD 486

[Close]
BLAST of Cp4.1LG03g08090 vs. Swiss-Prot
Match: PP330_ARATH (Pentatricopeptide repeat-containing protein At4g21065 OS=Arabidopsis thaliana GN=PCMP-H28 PE=2 SV=2)

HSP 1 Score: 247.3 bits (630), Expect = 2.3e-64
Identity = 122/307 (39.74%), Postives = 193/307 (62.87%), Query Frame = 1 

Query: 6   IIRGYASSESPQDAISVFGEMRRRGIRPNNLTYPFLLKACATLAALQEELGNLSLGRWVH 65
           +I G+A +  P++A++++ EM  +GI+P+  T   LL ACA       ++G L+LG+ VH
Sbjct: 193 VINGFAENGKPEEALALYTEMNSKGIKPDGFTIVSLLSACA-------KIGALTLGKRVH 252

Query: 66  SQVVGRGMVWNVQLGTAFVDMYAKSGDVGCARLVFNSLKQRSVWPWSAMILGLAQHGFAN 125
             ++  G+  N+      +D+YA+ G V  A+ +F+ +  ++   W+++I+GLA +GF  
Sbjct: 253 VYMIKVGLTRNLHSSNVLLDLYARCGRVEEAKTLFDEMVDKNSVSWTSLIVGLAVNGFGK 312

Query: 126 EAIELFTNMMSSS-VVPNYVTFIGVLCACSHAGLVDEGYHYFNIMERVYGIKPMMIHYGS 185
           EAIELF  M S+  ++P  +TF+G+L ACSH G+V EG+ YF  M   Y I+P + H+G 
Sbjct: 313 EAIELFKYMESTEGLLPCEITFVGILYACSHCGMVKEGFEYFRRMREEYKIEPRIEHFGC 372

Query: 186 MVDILGRAGRVKEAYEFIMSMHVQPDPIVWRTLLSACSARDVDGGAQVAEEARKRLLELE 245
           MVD+L RAG+VK+AYE+I SM +QP+ ++WRTLL AC+   V G + +AE AR ++L+LE
Sbjct: 373 MVDLLARAGQVKKAYEYIKSMPMQPNVVIWRTLLGACT---VHGDSDLAEFARIQILQLE 432

Query: 246 PKRGGNVVMVANMFAEVGMWKQAADCRRTMKDRGIKKMAGESCIEVGGSLCKFFSGFNAR 305
           P   G+ V+++NM+A    W      R+ M   G+KK+ G S +EVG  + +F  G  + 
Sbjct: 433 PNHSGDYVLLSNMYASEQRWSDVQKIRKQMLRDGVKKVPGHSLVEVGNRVHEFLMGDKSH 489

Query: 306 ADSHGIY 312
             S  IY
Sbjct: 493 PQSDAIY 489

[Close]
BLAST of Cp4.1LG03g08090 vs. Swiss-Prot
Match: PP175_ARATH (Pentatricopeptide repeat-containing protein At2g29760, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H33 PE=2 SV=1)

HSP 1 Score: 246.1 bits (627), Expect = 5.2e-64
Identity = 128/310 (41.29%), Postives = 189/310 (60.97%), Query Frame = 1 

Query: 6   IIRGYASSESPQDAISVFGEMR-RRGIRPNNLTYPFLLKACATLAALQEELGNLSLGRWV 65
           +I  Y  +  P +A+ VF E++ ++ ++ N +T    L ACA       ++G L LGRW+
Sbjct: 335 LISAYEQNGKPNEALIVFHELQLQKNMKLNQITLVSTLSACA-------QVGALELGRWI 394

Query: 66  HSQVVGRGMVWNVQLGTAFVDMYAKSGDVGCARLVFNSLKQRSVWPWSAMILGLAQHGFA 125
           HS +   G+  N  + +A + MY+K GD+  +R VFNS+++R V+ WSAMI GLA HG  
Sbjct: 395 HSYIKKHGIRMNFHVTSALIHMYSKCGDLEKSREVFNSVEKRDVFVWSAMIGGLAMHGCG 454

Query: 126 NEAIELFTNMMSSSVVPNYVTFIGVLCACSHAGLVDEGYHYFNIMERVYGIKPMMIHYGS 185
           NEA+++F  M  ++V PN VTF  V CACSH GLVDE    F+ ME  YGI P   HY  
Sbjct: 455 NEAVDMFYKMQEANVKPNGVTFTNVFCACSHTGLVDEAESLFHQMESNYGIVPEEKHYAC 514

Query: 186 MVDILGRAGRVKEAYEFIMSMHVQPDPIVWRTLLSACSARDVDGGAQVAEEARKRLLELE 245
           +VD+LGR+G +++A +FI +M + P   VW  LL AC    +     +AE A  RLLELE
Sbjct: 515 IVDVLGRSGYLEKAVKFIEAMPIPPSTSVWGALLGACK---IHANLNLAEMACTRLLELE 574

Query: 246 PKRGGNVVMVANMFAEVGMWKQAADCRRTMKDRGIKKMAGESCIEVGGSLCKFFSGFNAR 305
           P+  G  V+++N++A++G W+  ++ R+ M+  G+KK  G S IE+ G + +F SG NA 
Sbjct: 575 PRNDGAHVLLSNIYAKLGKWENVSELRKHMRVTGLKKEPGCSSIEIDGMIHEFLSGDNAH 634

Query: 306 ADSHGIYDLL 315
             S  +Y  L
Sbjct: 635 PMSEKVYGKL 634

[Close]
BLAST of Cp4.1LG03g08090 vs. Swiss-Prot
Match: PP433_ARATH (Pentatricopeptide repeat-containing protein At5g56310 OS=Arabidopsis thaliana GN=PCMP-E13 PE=2 SV=1)

HSP 1 Score: 242.3 bits (617), Expect = 7.5e-63
Identity = 131/317 (41.32%), Postives = 185/317 (58.36%), Query Frame = 1 

Query: 6   IIRGYASSESPQDAISVFGEMRRRGIRPNNLTYPFLLKACATLAALQEELGNLSLGRWVH 65
           +I GYA S    +AI VF  M    + P+ +T   +L ACA       +LG+L LG  + 
Sbjct: 221 VISGYAKSGRASEAIEVFQRMLMENVEPDEVTLLAVLSACA-------DLGSLELGERIC 280

Query: 66  SQVVGRGMVWNVQLGTAFVDMYAKSGDVGCARLVFNSLKQRSVWPWSAMILGLAQHGFAN 125
           S V  RGM   V L  A +DMYAKSG++  A  VF  + +R+V  W+ +I GLA HG   
Sbjct: 281 SYVDHRGMNRAVSLNNAVIDMYAKSGNITKALDVFECVNERNVVTWTTIIAGLATHGHGA 340

Query: 126 EAIELFTNMMSSSVVPNYVTFIGVLCACSHAGLVDEGYHYFNIMERVYGIKPMMIHYGSM 185
           EA+ +F  M+ + V PN VTFI +L ACSH G VD G   FN M   YGI P + HYG M
Sbjct: 341 EALAMFNRMVKAGVRPNDVTFIAILSACSHVGWVDLGKRLFNSMRSKYGIHPNIEHYGCM 400

Query: 186 VDILGRAGRVKEAYEFIMSMHVQPDPIVWRTLLSACSARDVDGGAQVAEEARKRLLELEP 245
           +D+LGRAG+++EA E I SM  + +  +W +LL   +A +V    ++ E A   L++LEP
Sbjct: 401 IDLLGRAGKLREADEVIKSMPFKANAAIWGSLL---AASNVHHDLELGERALSELIKLEP 460

Query: 246 KRGGNVVMVANMFAEVGMWKQAADCRRTMKDRGIKKMAGESCIEVGGSLCKFFSGFNARA 305
              GN +++AN+++ +G W ++   R  MK  G+KKMAGES IEV   + KF SG     
Sbjct: 461 NNSGNYMLLANLYSNLGRWDESRMMRNMMKGIGVKKMAGESSIEVENRVYKFISGDLTHP 520

Query: 306 DSHGIYDLLDGLDLHMQ 323
               I+++L  +DL +Q
Sbjct: 521 QVERIHEILQEMDLQIQ 527

[Close]
BLAST of Cp4.1LG03g08090 vs. Swiss-Prot
Match: PPR32_ARATH (Pentatricopeptide repeat-containing protein At1g11290, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H40 PE=2 SV=1)

HSP 1 Score: 241.1 bits (614), Expect = 1.7e-62
Identity = 126/317 (39.75%), Postives = 186/317 (58.68%), Query Frame = 1 

Query: 6   IIRGYASSESPQDAISVFGEMRRRGIRPNNLTYPFLLKACATLAALQEELGNLSLGRWVH 65
           +I G+A +  P DA++ F +MR R ++P+  TY  ++ A A L+            +W+H
Sbjct: 409 MILGFAQNGRPIDALNYFSQMRSRTVKPDTFTYVSVITAIAELSITHH-------AKWIH 468

Query: 66  SQVVGRGMVWNVQLGTAFVDMYAKSGDVGCARLVFNSLKQRSVWPWSAMILGLAQHGFAN 125
             V+   +  NV + TA VDMYAK G +  ARL+F+ + +R V  W+AMI G   HGF  
Sbjct: 469 GVVMRSCLDKNVFVTTALVDMYAKCGAIMIARLIFDMMSERHVTTWNAMIDGYGTHGFGK 528

Query: 126 EAIELFTNMMSSSVVPNYVTFIGVLCACSHAGLVDEGYHYFNIMERVYGIKPMMIHYGSM 185
            A+ELF  M   ++ PN VTF+ V+ ACSH+GLV+ G   F +M+  Y I+  M HYG+M
Sbjct: 529 AALELFEEMQKGTIKPNGVTFLSVISACSHSGLVEAGLKCFYMMKENYSIELSMDHYGAM 588

Query: 186 VDILGRAGRVKEAYEFIMSMHVQPDPIVWRTLLSACSARDVDGGAQVAEEARKRLLELEP 245
           VD+LGRAGR+ EA++FIM M V+P   V+  +L AC    +      AE+A +RL EL P
Sbjct: 589 VDLLGRAGRLNEAWDFIMQMPVKPAVNVYGAMLGAC---QIHKNVNFAEKAAERLFELNP 648

Query: 246 KRGGNVVMVANMFAEVGMWKQAADCRRTMKDRGIKKMAGESCIEVGGSLCKFFSGFNARA 305
             GG  V++AN++    MW++    R +M  +G++K  G S +E+   +  FFSG  A  
Sbjct: 649 DDGGYHVLLANIYRAASMWEKVGQVRVSMLRQGLRKTPGCSMVEIKNEVHSFFSGSTAHP 708

Query: 306 DSHGIYDLLDGLDLHMQ 323
           DS  IY  L+ L  H++
Sbjct: 709 DSKKIYAFLEKLICHIK 715

[Close]
BLAST of Cp4.1LG03g08090 vs. TrEMBL
Match: A0A0A0K153_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G007910 PE=4 SV=1)

HSP 1 Score: 511.5 bits (1316), Expect = 7.4e-142
Identity = 252/309 (81.55%), Postives = 272/309 (88.03%), Query Frame = 1 

Query: 18  DAISVFGEMRRRGIRPNNLTYPFLLKACATLAALQEELGNLSLGRWVHSQVVGRGMVWNV 77
           +AI  F +M   G  P+  T   +L ACA       ELGNLSLGRWVHSQVVGRGMV NV
Sbjct: 215 EAIDYFLKMGNHGFEPDETTMVVILSACA-------ELGNLSLGRWVHSQVVGRGMVLNV 274

Query: 78  QLGTAFVDMYAKSGDVGCARLVFNSLKQRSVWPWSAMILGLAQHGFANEAIELFTNMMSS 137
           QLGTAFVDMYAKSGDVGCAR VFN LKQ+SVW WSAMILGLAQHGFANEAIELFTNMMSS
Sbjct: 275 QLGTAFVDMYAKSGDVGCARHVFNCLKQKSVWTWSAMILGLAQHGFANEAIELFTNMMSS 334

Query: 138 SVVPNYVTFIGVLCACSHAGLVDEGYHYFNIMERVYGIKPMMIHYGSMVDILGRAGRVKE 197
            +VPN+VTFIGVLCACSHAGLVD+ YHYFN+MERVYGIKPMMIHYGSMVD+LGRAG+VKE
Sbjct: 335 PIVPNHVTFIGVLCACSHAGLVDKSYHYFNLMERVYGIKPMMIHYGSMVDVLGRAGQVKE 394

Query: 198 AYEFIMSMHVQPDPIVWRTLLSACSARDVDGGAQVAEEARKRLLELEPKRGGNVVMVANM 257
           AYE IMSM V+PDPIVWRTLLSACS RDV+GGA+VAEEARKRLLELEPKRGGNVVMVAN 
Sbjct: 395 AYELIMSMPVEPDPIVWRTLLSACSGRDVNGGAEVAEEARKRLLELEPKRGGNVVMVANK 454

Query: 258 FAEVGMWKQAADCRRTMKDRGIKKMAGESCIEVGGSLCKFFSGFNARADSHGIYDLLDGL 317
           FAE+GMWKQAAD RRTMKDRGIKKMAGESCIE+GGSL KFFSGF++RA   GIYDLLDGL
Sbjct: 455 FAELGMWKQAADYRRTMKDRGIKKMAGESCIELGGSLRKFFSGFDSRAAPDGIYDLLDGL 514

Query: 318 DLHMQIINF 327
           +LHMQ+ NF
Sbjct: 515 NLHMQLTNF 516

[Close]
BLAST of Cp4.1LG03g08090 vs. TrEMBL
Match: M5WZ10_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa004522mg PE=4 SV=1)

HSP 1 Score: 406.0 bits (1042), Expect = 4.4e-110
Identity = 195/308 (63.31%), Postives = 241/308 (78.25%), Query Frame = 1 

Query: 18  DAISVFGEMRRRGIRPNNLTYPFLLKACATLAALQEELGNLSLGRWVHSQVVGRGMVWNV 77
           + I  F +MR  G  P+  T   +L A +       ELGNLSLG+WVHSQV+ +G++ N 
Sbjct: 204 EGIGYFVKMRDCGFEPDETTMVVMLNASS-------ELGNLSLGKWVHSQVIEKGLILNC 263

Query: 78  QLGTAFVDMYAKSGDVGCARLVFNSLKQRSVWPWSAMILGLAQHGFANEAIELFTNMMSS 137
           QLGTA VDMYAKSG +  ARLVF+ ++ R+VW WSAMILGLAQHGFA EA+ELF  M++ 
Sbjct: 264 QLGTALVDMYAKSGALVYARLVFDRMELRNVWTWSAMILGLAQHGFAKEALELFPKMLNF 323

Query: 138 SVVPNYVTFIGVLCACSHAGLVDEGYHYFNIMERVYGIKPMMIHYGSMVDILGRAGRVKE 197
           SV PNYVTF+GVLCACSHAG VD+GY YF+ ME V+GIKPMMIHYG+MVDILGRAGR+ E
Sbjct: 324 SVRPNYVTFLGVLCACSHAGQVDDGYQYFHDMEHVHGIKPMMIHYGAMVDILGRAGRLNE 383

Query: 198 AYEFIMSMHVQPDPIVWRTLLSACSARDVDGGAQVAEEARKRLLELEPKRGGNVVMVANM 257
           AY FIMSM   PDPIVWRTLLSAC+ RD +    V  +  ++LLELEP RGGN+VMVANM
Sbjct: 384 AYSFIMSMPFDPDPIVWRTLLSACNTRDANDDEGVGNKVSEKLLELEPSRGGNLVMVANM 443

Query: 258 FAEVGMWKQAADCRRTMKDRGIKKMAGESCIEVGGSLCKFFSGFNARADSHGIYDLLDGL 317
           +AEVGMW++AA+ R+ MK+R +KK AGESC+E+GGS+ KFFSG+++RAD  GIY LLD L
Sbjct: 444 YAEVGMWEKAANLRKVMKERRVKKTAGESCVELGGSIHKFFSGYDSRADYEGIYQLLDVL 503

Query: 318 DLHMQIIN 326
            LHM+++N
Sbjct: 504 SLHMELVN 504

[Close]
BLAST of Cp4.1LG03g08090 vs. TrEMBL
Match: B9T0U0_RICCO (Cell division protein ftsH, putative OS=Ricinus communis GN=RCOM_0340700 PE=3 SV=1)

HSP 1 Score: 401.4 bits (1030), Expect = 1.1e-108
Identity = 193/308 (62.66%), Postives = 238/308 (77.27%), Query Frame = 1 

Query: 18   DAISVFGEMRRRGIRPNNLTYPFLLKACATLAALQEELGNLSLGRWVHSQVVGRGMVWNV 77
            +AI  F +MR  G  P+  T   +L  CA       E+GNL LGRW+HSQV+ RG+V N 
Sbjct: 848  EAIRYFLKMRDFGFEPDGTTMVLMLVICA-------EMGNLGLGRWIHSQVIERGLVLNY 907

Query: 78   QLGTAFVDMYAKSGDVGCARLVFNSLKQRSVWPWSAMILGLAQHGFANEAIELFTNMMSS 137
            QLGTA VDMYAKSG VG A+LVF+ +K+++VW WSAMILGLAQHGFA E +ELF +MM S
Sbjct: 908  QLGTALVDMYAKSGAVGYAKLVFDRMKEKNVWTWSAMILGLAQHGFAKEGLELFLDMMRS 967

Query: 138  SVV-PNYVTFIGVLCACSHAGLVDEGYHYFNIMERVYGIKPMMIHYGSMVDILGRAGRVK 197
            S++ PNYVTF+GVLCACSHAGLV +G+ YF+ M   YGIKPMM+HYG+MVDILGRAG +K
Sbjct: 968  SLIHPNYVTFLGVLCACSHAGLVSDGFRYFHEMGHTYGIKPMMVHYGAMVDILGRAGLLK 1027

Query: 198  EAYEFIMSMHVQPDPIVWRTLLSACSARDVDGGAQVAEEARKRLLELEPKRGGNVVMVAN 257
            EAY FI  M  QPDPIVWRTLLSACS  DV     VA + RKRLLELEP+R GN VMVAN
Sbjct: 1028 EAYNFITKMPFQPDPIVWRTLLSACSIHDVKDSTGVAYKVRKRLLELEPRRSGNFVMVAN 1087

Query: 258  MFAEVGMWKQAADCRRTMKDRGIKKMAGESCIEVGGSLCKFFSGFNARADSHGIYDLLDG 317
            M+A+ GMW++AA  RR M+D G+KK AGESC+E+ GS+ +FFSG++++ D  G+Y LLDG
Sbjct: 1088 MYADAGMWEKAAKVRRVMRDGGLKKKAGESCVELSGSIHRFFSGYDSQDDKEGMYQLLDG 1147

Query: 318  LDLHMQII 325
            L+LHMQ++
Sbjct: 1148 LNLHMQMM 1148

[Close]
BLAST of Cp4.1LG03g08090 vs. TrEMBL
Match: A5AIR6_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_032528 PE=4 SV=1)

HSP 1 Score: 397.1 bits (1019), Expect = 2.0e-107
Identity = 193/320 (60.31%), Postives = 241/320 (75.31%), Query Frame = 1 

Query: 6   IIRGYASSESPQDAISVFGEMRRRGIRPNNLTYPFLLKACATLAALQEELGNLSLGRWVH 65
           ++     +E   D+  +F +MR  G  P+  T   LL AC+       ELGNLS GRWVH
Sbjct: 191 VLSACVDNEWLNDSFGLFVKMRGSGFDPDETTMVILLSACS-------ELGNLSFGRWVH 250

Query: 66  SQVVGRGMVWNVQLGTAFVDMYAKSGDVGCARLVFNSLKQRSVWPWSAMILGLAQHGFAN 125
           SQV+ +GMV N +LGTA VDMYAK G V  A LVF+ + +R+VW WSAMILGLAQHGFA 
Sbjct: 251 SQVIEKGMVVNCRLGTALVDMYAKCGAVCEASLVFHRMLERNVWTWSAMILGLAQHGFAK 310

Query: 126 EAIELFTNMMSSSVVPNYVTFIGVLCACSHAGLVDEGYHYFNIMERVYGIKPMMIHYGSM 185
           EA+ELF  M  SS+ PNYVTF+GVLCACSHAGLVD+GY +F+ ME V+GI+PMMIHYG+M
Sbjct: 311 EALELFPKMKQSSISPNYVTFLGVLCACSHAGLVDDGYRFFHDMEYVHGIEPMMIHYGAM 370

Query: 186 VDILGRAGRVKEAYEFIMSMHVQPDPIVWRTLLSACSARDVDGGAQVAEEARKRLLELEP 245
           VDIL RAGR+KEAY FI++M V+ DP+VWRTLLSAC+   ++    V ++ RKRLLELEP
Sbjct: 371 VDILSRAGRLKEAYNFILNMPVEADPVVWRTLLSACTIHGINDNDGVGDKVRKRLLELEP 430

Query: 246 KRGGNVVMVANMFAEVGMWKQAADCRRTMKDRGIKKMAGESCIEVGGSLCKFFSGFNARA 305
           +R GN VMVANM+AEVG W +AA+ RRTMKD G+KKMAGESCIEVGGS+ +FFSG + + 
Sbjct: 431 RRSGNFVMVANMYAEVGKWDKAANVRRTMKDTGLKKMAGESCIEVGGSIHRFFSGDDPQL 490

Query: 306 DSHGIYDLLDGLDLHMQIIN 326
           D   +  LLDGL+LHM+ ++
Sbjct: 491 DCEDVLQLLDGLNLHMKTVS 503

[Close]
BLAST of Cp4.1LG03g08090 vs. TrEMBL
Match: F6H5S7_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_14s0108g00600 PE=4 SV=1)

HSP 1 Score: 397.1 bits (1019), Expect = 2.0e-107
Identity = 193/320 (60.31%), Postives = 241/320 (75.31%), Query Frame = 1 

Query: 6   IIRGYASSESPQDAISVFGEMRRRGIRPNNLTYPFLLKACATLAALQEELGNLSLGRWVH 65
           ++     +E   D+  +F +MR  G  P+  T   LL AC+       ELGNLS GRWVH
Sbjct: 195 VLSACVDNEWLNDSFGLFVKMRGSGFDPDETTMVILLSACS-------ELGNLSFGRWVH 254

Query: 66  SQVVGRGMVWNVQLGTAFVDMYAKSGDVGCARLVFNSLKQRSVWPWSAMILGLAQHGFAN 125
           SQV+ +GMV N +LGTA VDMYAK G V  A LVF+ + +R+VW WSAMILGLAQHGFA 
Sbjct: 255 SQVIEKGMVVNCRLGTALVDMYAKCGAVCEASLVFHRMLERNVWTWSAMILGLAQHGFAK 314

Query: 126 EAIELFTNMMSSSVVPNYVTFIGVLCACSHAGLVDEGYHYFNIMERVYGIKPMMIHYGSM 185
           EA+ELF  M  SS+ PNYVTF+GVLCACSHAGLVD+GY +F+ ME V+GI+PMMIHYG+M
Sbjct: 315 EALELFPKMKQSSISPNYVTFLGVLCACSHAGLVDDGYRFFHDMEYVHGIEPMMIHYGAM 374

Query: 186 VDILGRAGRVKEAYEFIMSMHVQPDPIVWRTLLSACSARDVDGGAQVAEEARKRLLELEP 245
           VDIL RAGR+KEAY FI++M V+ DP+VWRTLLSAC+   ++    V ++ RKRLLELEP
Sbjct: 375 VDILSRAGRLKEAYNFILNMPVEADPVVWRTLLSACTIHGINDNDGVGDKVRKRLLELEP 434

Query: 246 KRGGNVVMVANMFAEVGMWKQAADCRRTMKDRGIKKMAGESCIEVGGSLCKFFSGFNARA 305
           +R GN VMVANM+AEVG W +AA+ RRTMKD G+KKMAGESCIEVGGS+ +FFSG + + 
Sbjct: 435 RRSGNFVMVANMYAEVGKWDKAANVRRTMKDTGLKKMAGESCIEVGGSIHRFFSGDDPQL 494

Query: 306 DSHGIYDLLDGLDLHMQIIN 326
           D   +  LLDGL+LHM+ ++
Sbjct: 495 DCEDVLQLLDGLNLHMKTVS 507

[Close]
BLAST of Cp4.1LG03g08090 vs. TAIR10
Match: AT2G36730.1 (AT2G36730.1 Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 344.0 bits (881), Expect = 1.0e-94
Identity = 171/294 (58.16%), Postives = 217/294 (73.81%), Query Frame = 1 

Query: 23  FGEMRRRGIRPNNLTYPFLLKACATLAALQEELGNLSLGRWVHSQVVGRGMVWNVQLGTA 82
           F EM  +   P+  T   LL AC          GNLSLG+ VHSQV+ R +  N +LGTA
Sbjct: 202 FCEMIGKRFCPDETTMVVLLSACG---------GNLSLGKLVHSQVMVRELELNCRLGTA 261

Query: 83  FVDMYAKSGDVGCARLVFNSLKQRSVWPWSAMILGLAQHGFANEAIELFTNMMS-SSVVP 142
            VDMYAKSG +  ARLVF  +  ++VW WSAMI+GLAQ+GFA EA++LF+ MM  SSV P
Sbjct: 262 LVDMYAKSGGLEYARLVFERMVDKNVWTWSAMIVGLAQYGFAEEALQLFSKMMKESSVRP 321

Query: 143 NYVTFIGVLCACSHAGLVDEGYHYFNIMERVYGIKPMMIHYGSMVDILGRAGRVKEAYEF 202
           NYVTF+GVLCACSH GLVD+GY YF+ ME+++ IKPMMIHYG+MVDILGRAGR+ EAY+F
Sbjct: 322 NYVTFLGVLCACSHTGLVDDGYKYFHEMEKIHKIKPMMIHYGAMVDILGRAGRLNEAYDF 381

Query: 203 IMSMHVQPDPIVWRTLLSACSARDVDGGAQVAEEARKRLLELEPKRGGNVVMVANMFAEV 262
           I  M  +PD +VWRTLLSACS    +    + E+ +KRL+ELEPKR GN+V+VAN FAE 
Sbjct: 382 IKKMPFEPDAVVWRTLLSACSIHHDEDDEGIGEKVKKRLIELEPKRSGNLVIVANRFAEA 441

Query: 263 GMWKQAADCRRTMKDRGIKKMAGESCIEVGGSLCKFFSGFNARADSHGIYDLLD 316
            MW +AA+ RR MK+  +KK+AGESC+E+GGS  +FFSG++ R++   IY+LLD
Sbjct: 442 RMWAEAAEVRRVMKETKMKKIAGESCLELGGSFHRFFSGYDPRSEYVSIYELLD 486

[Close]
BLAST of Cp4.1LG03g08090 vs. TAIR10
Match: AT4G21065.1 (AT4G21065.1 Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 247.3 bits (630), Expect = 1.3e-65
Identity = 122/307 (39.74%), Postives = 193/307 (62.87%), Query Frame = 1 

Query: 6   IIRGYASSESPQDAISVFGEMRRRGIRPNNLTYPFLLKACATLAALQEELGNLSLGRWVH 65
           +I G+A +  P++A++++ EM  +GI+P+  T   LL ACA       ++G L+LG+ VH
Sbjct: 193 VINGFAENGKPEEALALYTEMNSKGIKPDGFTIVSLLSACA-------KIGALTLGKRVH 252

Query: 66  SQVVGRGMVWNVQLGTAFVDMYAKSGDVGCARLVFNSLKQRSVWPWSAMILGLAQHGFAN 125
             ++  G+  N+      +D+YA+ G V  A+ +F+ +  ++   W+++I+GLA +GF  
Sbjct: 253 VYMIKVGLTRNLHSSNVLLDLYARCGRVEEAKTLFDEMVDKNSVSWTSLIVGLAVNGFGK 312

Query: 126 EAIELFTNMMSSS-VVPNYVTFIGVLCACSHAGLVDEGYHYFNIMERVYGIKPMMIHYGS 185
           EAIELF  M S+  ++P  +TF+G+L ACSH G+V EG+ YF  M   Y I+P + H+G 
Sbjct: 313 EAIELFKYMESTEGLLPCEITFVGILYACSHCGMVKEGFEYFRRMREEYKIEPRIEHFGC 372

Query: 186 MVDILGRAGRVKEAYEFIMSMHVQPDPIVWRTLLSACSARDVDGGAQVAEEARKRLLELE 245
           MVD+L RAG+VK+AYE+I SM +QP+ ++WRTLL AC+   V G + +AE AR ++L+LE
Sbjct: 373 MVDLLARAGQVKKAYEYIKSMPMQPNVVIWRTLLGACT---VHGDSDLAEFARIQILQLE 432

Query: 246 PKRGGNVVMVANMFAEVGMWKQAADCRRTMKDRGIKKMAGESCIEVGGSLCKFFSGFNAR 305
           P   G+ V+++NM+A    W      R+ M   G+KK+ G S +EVG  + +F  G  + 
Sbjct: 433 PNHSGDYVLLSNMYASEQRWSDVQKIRKQMLRDGVKKVPGHSLVEVGNRVHEFLMGDKSH 489

Query: 306 ADSHGIY 312
             S  IY
Sbjct: 493 PQSDAIY 489

[Close]
BLAST of Cp4.1LG03g08090 vs. TAIR10
Match: AT2G29760.1 (AT2G29760.1 Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 246.1 bits (627), Expect = 2.9e-65
Identity = 128/310 (41.29%), Postives = 189/310 (60.97%), Query Frame = 1 

Query: 6   IIRGYASSESPQDAISVFGEMR-RRGIRPNNLTYPFLLKACATLAALQEELGNLSLGRWV 65
           +I  Y  +  P +A+ VF E++ ++ ++ N +T    L ACA       ++G L LGRW+
Sbjct: 335 LISAYEQNGKPNEALIVFHELQLQKNMKLNQITLVSTLSACA-------QVGALELGRWI 394

Query: 66  HSQVVGRGMVWNVQLGTAFVDMYAKSGDVGCARLVFNSLKQRSVWPWSAMILGLAQHGFA 125
           HS +   G+  N  + +A + MY+K GD+  +R VFNS+++R V+ WSAMI GLA HG  
Sbjct: 395 HSYIKKHGIRMNFHVTSALIHMYSKCGDLEKSREVFNSVEKRDVFVWSAMIGGLAMHGCG 454

Query: 126 NEAIELFTNMMSSSVVPNYVTFIGVLCACSHAGLVDEGYHYFNIMERVYGIKPMMIHYGS 185
           NEA+++F  M  ++V PN VTF  V CACSH GLVDE    F+ ME  YGI P   HY  
Sbjct: 455 NEAVDMFYKMQEANVKPNGVTFTNVFCACSHTGLVDEAESLFHQMESNYGIVPEEKHYAC 514

Query: 186 MVDILGRAGRVKEAYEFIMSMHVQPDPIVWRTLLSACSARDVDGGAQVAEEARKRLLELE 245
           +VD+LGR+G +++A +FI +M + P   VW  LL AC    +     +AE A  RLLELE
Sbjct: 515 IVDVLGRSGYLEKAVKFIEAMPIPPSTSVWGALLGACK---IHANLNLAEMACTRLLELE 574

Query: 246 PKRGGNVVMVANMFAEVGMWKQAADCRRTMKDRGIKKMAGESCIEVGGSLCKFFSGFNAR 305
           P+  G  V+++N++A++G W+  ++ R+ M+  G+KK  G S IE+ G + +F SG NA 
Sbjct: 575 PRNDGAHVLLSNIYAKLGKWENVSELRKHMRVTGLKKEPGCSSIEIDGMIHEFLSGDNAH 634

Query: 306 ADSHGIYDLL 315
             S  +Y  L
Sbjct: 635 PMSEKVYGKL 634

[Close]
BLAST of Cp4.1LG03g08090 vs. TAIR10
Match: AT5G56310.1 (AT5G56310.1 Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 242.3 bits (617), Expect = 4.2e-64
Identity = 131/317 (41.32%), Postives = 185/317 (58.36%), Query Frame = 1 

Query: 6   IIRGYASSESPQDAISVFGEMRRRGIRPNNLTYPFLLKACATLAALQEELGNLSLGRWVH 65
           +I GYA S    +AI VF  M    + P+ +T   +L ACA       +LG+L LG  + 
Sbjct: 221 VISGYAKSGRASEAIEVFQRMLMENVEPDEVTLLAVLSACA-------DLGSLELGERIC 280

Query: 66  SQVVGRGMVWNVQLGTAFVDMYAKSGDVGCARLVFNSLKQRSVWPWSAMILGLAQHGFAN 125
           S V  RGM   V L  A +DMYAKSG++  A  VF  + +R+V  W+ +I GLA HG   
Sbjct: 281 SYVDHRGMNRAVSLNNAVIDMYAKSGNITKALDVFECVNERNVVTWTTIIAGLATHGHGA 340

Query: 126 EAIELFTNMMSSSVVPNYVTFIGVLCACSHAGLVDEGYHYFNIMERVYGIKPMMIHYGSM 185
           EA+ +F  M+ + V PN VTFI +L ACSH G VD G   FN M   YGI P + HYG M
Sbjct: 341 EALAMFNRMVKAGVRPNDVTFIAILSACSHVGWVDLGKRLFNSMRSKYGIHPNIEHYGCM 400

Query: 186 VDILGRAGRVKEAYEFIMSMHVQPDPIVWRTLLSACSARDVDGGAQVAEEARKRLLELEP 245
           +D+LGRAG+++EA E I SM  + +  +W +LL   +A +V    ++ E A   L++LEP
Sbjct: 401 IDLLGRAGKLREADEVIKSMPFKANAAIWGSLL---AASNVHHDLELGERALSELIKLEP 460

Query: 246 KRGGNVVMVANMFAEVGMWKQAADCRRTMKDRGIKKMAGESCIEVGGSLCKFFSGFNARA 305
              GN +++AN+++ +G W ++   R  MK  G+KKMAGES IEV   + KF SG     
Sbjct: 461 NNSGNYMLLANLYSNLGRWDESRMMRNMMKGIGVKKMAGESSIEVENRVYKFISGDLTHP 520

Query: 306 DSHGIYDLLDGLDLHMQ 323
               I+++L  +DL +Q
Sbjct: 521 QVERIHEILQEMDLQIQ 527

[Close]
BLAST of Cp4.1LG03g08090 vs. TAIR10
Match: AT1G11290.1 (AT1G11290.1 Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 241.1 bits (614), Expect = 9.4e-64
Identity = 126/317 (39.75%), Postives = 186/317 (58.68%), Query Frame = 1 

Query: 6   IIRGYASSESPQDAISVFGEMRRRGIRPNNLTYPFLLKACATLAALQEELGNLSLGRWVH 65
           +I G+A +  P DA++ F +MR R ++P+  TY  ++ A A L+            +W+H
Sbjct: 409 MILGFAQNGRPIDALNYFSQMRSRTVKPDTFTYVSVITAIAELSITHH-------AKWIH 468

Query: 66  SQVVGRGMVWNVQLGTAFVDMYAKSGDVGCARLVFNSLKQRSVWPWSAMILGLAQHGFAN 125
             V+   +  NV + TA VDMYAK G +  ARL+F+ + +R V  W+AMI G   HGF  
Sbjct: 469 GVVMRSCLDKNVFVTTALVDMYAKCGAIMIARLIFDMMSERHVTTWNAMIDGYGTHGFGK 528

Query: 126 EAIELFTNMMSSSVVPNYVTFIGVLCACSHAGLVDEGYHYFNIMERVYGIKPMMIHYGSM 185
            A+ELF  M   ++ PN VTF+ V+ ACSH+GLV+ G   F +M+  Y I+  M HYG+M
Sbjct: 529 AALELFEEMQKGTIKPNGVTFLSVISACSHSGLVEAGLKCFYMMKENYSIELSMDHYGAM 588

Query: 186 VDILGRAGRVKEAYEFIMSMHVQPDPIVWRTLLSACSARDVDGGAQVAEEARKRLLELEP 245
           VD+LGRAGR+ EA++FIM M V+P   V+  +L AC    +      AE+A +RL EL P
Sbjct: 589 VDLLGRAGRLNEAWDFIMQMPVKPAVNVYGAMLGAC---QIHKNVNFAEKAAERLFELNP 648

Query: 246 KRGGNVVMVANMFAEVGMWKQAADCRRTMKDRGIKKMAGESCIEVGGSLCKFFSGFNARA 305
             GG  V++AN++    MW++    R +M  +G++K  G S +E+   +  FFSG  A  
Sbjct: 649 DDGGYHVLLANIYRAASMWEKVGQVRVSMLRQGLRKTPGCSMVEIKNEVHSFFSGSTAHP 708

Query: 306 DSHGIYDLLDGLDLHMQ 323
           DS  IY  L+ L  H++
Sbjct: 709 DSKKIYAFLEKLICHIK 715

[Close]
BLAST of Cp4.1LG03g08090 vs. NCBI nr
Match: gi|778722801|ref|XP_011658571.1| (PREDICTED: pentatricopeptide repeat-containing protein At2g36730 isoform X2 [Cucumis sativus])

HSP 1 Score: 577.0 bits (1486), Expect = 2.1e-161
Identity = 283/335 (84.48%), Postives = 305/335 (91.04%), Query Frame = 1 

Query: 5   FIIRGYASSESPQDAISVFGEMRRRGIRPNNLTYPFLLKACATLAALQE----------- 64
           FIIRGY+SS+SPQ+AIS+FGEMRRRG+RPNNLT+PFLLKACATLA LQE           
Sbjct: 101 FIIRGYSSSDSPQEAISLFGEMRRRGVRPNNLTFPFLLKACATLATLQEDETTMVVILSA 160

Query: 65  --ELGNLSLGRWVHSQVVGRGMVWNVQLGTAFVDMYAKSGDVGCARLVFNSLKQRSVWPW 124
             ELGNLSLGRWVHSQVVGRGMV NVQLGTAFVDMYAKSGDVGCAR VFN LKQ+SVW W
Sbjct: 161 CAELGNLSLGRWVHSQVVGRGMVLNVQLGTAFVDMYAKSGDVGCARHVFNCLKQKSVWTW 220

Query: 125 SAMILGLAQHGFANEAIELFTNMMSSSVVPNYVTFIGVLCACSHAGLVDEGYHYFNIMER 184
           SAMILGLAQHGFANEAIELFTNMMSS +VPN+VTFIGVLCACSHAGLVD+ YHYFN+MER
Sbjct: 221 SAMILGLAQHGFANEAIELFTNMMSSPIVPNHVTFIGVLCACSHAGLVDKSYHYFNLMER 280

Query: 185 VYGIKPMMIHYGSMVDILGRAGRVKEAYEFIMSMHVQPDPIVWRTLLSACSARDVDGGAQ 244
           VYGIKPMMIHYGSMVD+LGRAG+VKEAYE IMSM V+PDPIVWRTLLSACS RDV+GGA+
Sbjct: 281 VYGIKPMMIHYGSMVDVLGRAGQVKEAYELIMSMPVEPDPIVWRTLLSACSGRDVNGGAE 340

Query: 245 VAEEARKRLLELEPKRGGNVVMVANMFAEVGMWKQAADCRRTMKDRGIKKMAGESCIEVG 304
           VAEEARKRLLELEPKRGGNVVMVAN FAE+GMWKQAAD RRTMKDRGIKKMAGESCIE+G
Sbjct: 341 VAEEARKRLLELEPKRGGNVVMVANKFAELGMWKQAADYRRTMKDRGIKKMAGESCIELG 400

Query: 305 GSLCKFFSGFNARADSHGIYDLLDGLDLHMQIINF 327
           GSL KFFSGF++RA   GIYDLLDGL+LHMQ+ NF
Sbjct: 401 GSLRKFFSGFDSRAAPDGIYDLLDGLNLHMQLTNF 435

[Close]
BLAST of Cp4.1LG03g08090 vs. NCBI nr
Match: gi|659094371|ref|XP_008448024.1| (PREDICTED: pentatricopeptide repeat-containing protein At2g36730 isoform X2 [Cucumis melo])

HSP 1 Score: 572.0 bits (1473), Expect = 6.6e-160
Identity = 279/334 (83.53%), Postives = 302/334 (90.42%), Query Frame = 1 

Query: 6   IIRGYASSESPQDAISVFGEMRRRGIRPNNLTYPFLLKACATLAALQE------------ 65
           IIRGY+SS+SP++AIS+FGEMRRRG+ PNNLT+PFLLKACATLA LQE            
Sbjct: 102 IIRGYSSSDSPREAISLFGEMRRRGVIPNNLTFPFLLKACATLATLQEDETTMVVILSAC 161

Query: 66  -ELGNLSLGRWVHSQVVGRGMVWNVQLGTAFVDMYAKSGDVGCARLVFNSLKQRSVWPWS 125
            ELGNLSLGRWVHSQVVGRGMV N+QLGTAFVDMYAKSGDVGCAR VFN LKQ+SVW WS
Sbjct: 162 AELGNLSLGRWVHSQVVGRGMVLNIQLGTAFVDMYAKSGDVGCARRVFNCLKQKSVWTWS 221

Query: 126 AMILGLAQHGFANEAIELFTNMMSSSVVPNYVTFIGVLCACSHAGLVDEGYHYFNIMERV 185
           AMILGLAQHGFANEAIELFTNM SS +VPNYVTF+GVLCACSHAGLVD+ YHYFN+MERV
Sbjct: 222 AMILGLAQHGFANEAIELFTNMKSSPIVPNYVTFVGVLCACSHAGLVDKSYHYFNVMERV 281

Query: 186 YGIKPMMIHYGSMVDILGRAGRVKEAYEFIMSMHVQPDPIVWRTLLSACSARDVDGGAQV 245
           YGIKPMMIHYG MVD+LGRAG+VKEAYE IMSM V+PDP+VWRTLLSACS RDV+GGA+V
Sbjct: 282 YGIKPMMIHYGLMVDVLGRAGQVKEAYELIMSMPVEPDPVVWRTLLSACSGRDVNGGAEV 341

Query: 246 AEEARKRLLELEPKRGGNVVMVANMFAEVGMWKQAADCRRTMKDRGIKKMAGESCIEVGG 305
           AEEARKRLLELEPKRGGNVVMVAN FAEVGMWKQAAD RRTMKDRGIKKMAGESCIE+GG
Sbjct: 342 AEEARKRLLELEPKRGGNVVMVANKFAEVGMWKQAADYRRTMKDRGIKKMAGESCIELGG 401

Query: 306 SLCKFFSGFNARADSHGIYDLLDGLDLHMQIINF 327
           SL KFFSGFN+RA S GIYDLLDGL+LHMQ+ NF
Sbjct: 402 SLRKFFSGFNSRAASDGIYDLLDGLNLHMQLTNF 435

[Close]
BLAST of Cp4.1LG03g08090 vs. NCBI nr
Match: gi|659094369|ref|XP_008448023.1| (PREDICTED: pentatricopeptide repeat-containing protein At2g36730 isoform X1 [Cucumis melo])

HSP 1 Score: 513.5 bits (1321), Expect = 2.8e-142
Identity = 251/309 (81.23%), Postives = 271/309 (87.70%), Query Frame = 1 

Query: 18  DAISVFGEMRRRGIRPNNLTYPFLLKACATLAALQEELGNLSLGRWVHSQVVGRGMVWNV 77
           +AI  F +M   G  P+  T   +L ACA       ELGNLSLGRWVHSQVVGRGMV N+
Sbjct: 215 EAIDYFLKMGNHGFEPDETTMVVILSACA-------ELGNLSLGRWVHSQVVGRGMVLNI 274

Query: 78  QLGTAFVDMYAKSGDVGCARLVFNSLKQRSVWPWSAMILGLAQHGFANEAIELFTNMMSS 137
           QLGTAFVDMYAKSGDVGCAR VFN LKQ+SVW WSAMILGLAQHGFANEAIELFTNM SS
Sbjct: 275 QLGTAFVDMYAKSGDVGCARRVFNCLKQKSVWTWSAMILGLAQHGFANEAIELFTNMKSS 334

Query: 138 SVVPNYVTFIGVLCACSHAGLVDEGYHYFNIMERVYGIKPMMIHYGSMVDILGRAGRVKE 197
            +VPNYVTF+GVLCACSHAGLVD+ YHYFN+MERVYGIKPMMIHYG MVD+LGRAG+VKE
Sbjct: 335 PIVPNYVTFVGVLCACSHAGLVDKSYHYFNVMERVYGIKPMMIHYGLMVDVLGRAGQVKE 394

Query: 198 AYEFIMSMHVQPDPIVWRTLLSACSARDVDGGAQVAEEARKRLLELEPKRGGNVVMVANM 257
           AYE IMSM V+PDP+VWRTLLSACS RDV+GGA+VAEEARKRLLELEPKRGGNVVMVAN 
Sbjct: 395 AYELIMSMPVEPDPVVWRTLLSACSGRDVNGGAEVAEEARKRLLELEPKRGGNVVMVANK 454

Query: 258 FAEVGMWKQAADCRRTMKDRGIKKMAGESCIEVGGSLCKFFSGFNARADSHGIYDLLDGL 317
           FAEVGMWKQAAD RRTMKDRGIKKMAGESCIE+GGSL KFFSGFN+RA S GIYDLLDGL
Sbjct: 455 FAEVGMWKQAADYRRTMKDRGIKKMAGESCIELGGSLRKFFSGFNSRAASDGIYDLLDGL 514

Query: 318 DLHMQIINF 327
           +LHMQ+ NF
Sbjct: 515 NLHMQLTNF 516

[Close]
BLAST of Cp4.1LG03g08090 vs. NCBI nr
Match: gi|449461643|ref|XP_004148551.1| (PREDICTED: pentatricopeptide repeat-containing protein At2g36730 isoform X1 [Cucumis sativus])

HSP 1 Score: 511.5 bits (1316), Expect = 1.1e-141
Identity = 252/309 (81.55%), Postives = 272/309 (88.03%), Query Frame = 1 

Query: 18  DAISVFGEMRRRGIRPNNLTYPFLLKACATLAALQEELGNLSLGRWVHSQVVGRGMVWNV 77
           +AI  F +M   G  P+  T   +L ACA       ELGNLSLGRWVHSQVVGRGMV NV
Sbjct: 215 EAIDYFLKMGNHGFEPDETTMVVILSACA-------ELGNLSLGRWVHSQVVGRGMVLNV 274

Query: 78  QLGTAFVDMYAKSGDVGCARLVFNSLKQRSVWPWSAMILGLAQHGFANEAIELFTNMMSS 137
           QLGTAFVDMYAKSGDVGCAR VFN LKQ+SVW WSAMILGLAQHGFANEAIELFTNMMSS
Sbjct: 275 QLGTAFVDMYAKSGDVGCARHVFNCLKQKSVWTWSAMILGLAQHGFANEAIELFTNMMSS 334

Query: 138 SVVPNYVTFIGVLCACSHAGLVDEGYHYFNIMERVYGIKPMMIHYGSMVDILGRAGRVKE 197
            +VPN+VTFIGVLCACSHAGLVD+ YHYFN+MERVYGIKPMMIHYGSMVD+LGRAG+VKE
Sbjct: 335 PIVPNHVTFIGVLCACSHAGLVDKSYHYFNLMERVYGIKPMMIHYGSMVDVLGRAGQVKE 394

Query: 198 AYEFIMSMHVQPDPIVWRTLLSACSARDVDGGAQVAEEARKRLLELEPKRGGNVVMVANM 257
           AYE IMSM V+PDPIVWRTLLSACS RDV+GGA+VAEEARKRLLELEPKRGGNVVMVAN 
Sbjct: 395 AYELIMSMPVEPDPIVWRTLLSACSGRDVNGGAEVAEEARKRLLELEPKRGGNVVMVANK 454

Query: 258 FAEVGMWKQAADCRRTMKDRGIKKMAGESCIEVGGSLCKFFSGFNARADSHGIYDLLDGL 317
           FAE+GMWKQAAD RRTMKDRGIKKMAGESCIE+GGSL KFFSGF++RA   GIYDLLDGL
Sbjct: 455 FAELGMWKQAADYRRTMKDRGIKKMAGESCIELGGSLRKFFSGFDSRAAPDGIYDLLDGL 514

Query: 318 DLHMQIINF 327
           +LHMQ+ NF
Sbjct: 515 NLHMQLTNF 516

[Close]
BLAST of Cp4.1LG03g08090 vs. NCBI nr
Match: gi|595973476|ref|XP_007217715.1| (hypothetical protein PRUPE_ppa004522mg [Prunus persica])

HSP 1 Score: 406.0 bits (1042), Expect = 6.3e-110
Identity = 195/308 (63.31%), Postives = 241/308 (78.25%), Query Frame = 1 

Query: 18  DAISVFGEMRRRGIRPNNLTYPFLLKACATLAALQEELGNLSLGRWVHSQVVGRGMVWNV 77
           + I  F +MR  G  P+  T   +L A +       ELGNLSLG+WVHSQV+ +G++ N 
Sbjct: 204 EGIGYFVKMRDCGFEPDETTMVVMLNASS-------ELGNLSLGKWVHSQVIEKGLILNC 263

Query: 78  QLGTAFVDMYAKSGDVGCARLVFNSLKQRSVWPWSAMILGLAQHGFANEAIELFTNMMSS 137
           QLGTA VDMYAKSG +  ARLVF+ ++ R+VW WSAMILGLAQHGFA EA+ELF  M++ 
Sbjct: 264 QLGTALVDMYAKSGALVYARLVFDRMELRNVWTWSAMILGLAQHGFAKEALELFPKMLNF 323

Query: 138 SVVPNYVTFIGVLCACSHAGLVDEGYHYFNIMERVYGIKPMMIHYGSMVDILGRAGRVKE 197
           SV PNYVTF+GVLCACSHAG VD+GY YF+ ME V+GIKPMMIHYG+MVDILGRAGR+ E
Sbjct: 324 SVRPNYVTFLGVLCACSHAGQVDDGYQYFHDMEHVHGIKPMMIHYGAMVDILGRAGRLNE 383

Query: 198 AYEFIMSMHVQPDPIVWRTLLSACSARDVDGGAQVAEEARKRLLELEPKRGGNVVMVANM 257
           AY FIMSM   PDPIVWRTLLSAC+ RD +    V  +  ++LLELEP RGGN+VMVANM
Sbjct: 384 AYSFIMSMPFDPDPIVWRTLLSACNTRDANDDEGVGNKVSEKLLELEPSRGGNLVMVANM 443

Query: 258 FAEVGMWKQAADCRRTMKDRGIKKMAGESCIEVGGSLCKFFSGFNARADSHGIYDLLDGL 317
           +AEVGMW++AA+ R+ MK+R +KK AGESC+E+GGS+ KFFSG+++RAD  GIY LLD L
Sbjct: 444 YAEVGMWEKAANLRKVMKERRVKKTAGESCVELGGSIHKFFSGYDSRADYEGIYQLLDVL 503

Query: 318 DLHMQIIN 326
            LHM+++N
Sbjct: 504 SLHMELVN 504

The following BLAST results are available for this feature:
BLAST of Cp4.1LG03g08090 vs. Swiss-Prot
Match NameE-valueIdentityDescription
PP188_ARATH1.8e-9358.16Pentatricopeptide repeat-containing protein At2g36730 OS=Arabidopsis thaliana GN... [more]
PP330_ARATH2.3e-6439.74Pentatricopeptide repeat-containing protein At4g21065 OS=Arabidopsis thaliana GN... [more]
PP175_ARATH5.2e-6441.29Pentatricopeptide repeat-containing protein At2g29760, chloroplastic OS=Arabidop... [more]
PP433_ARATH7.5e-6341.32Pentatricopeptide repeat-containing protein At5g56310 OS=Arabidopsis thaliana GN... [more]
PPR32_ARATH1.7e-6239.75Pentatricopeptide repeat-containing protein At1g11290, chloroplastic OS=Arabidop... [more]
BLAST of Cp4.1LG03g08090 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K153_CUCSA7.4e-14281.55Uncharacterized protein OS=Cucumis sativus GN=Csa_7G007910 PE=4 SV=1[more]
M5WZ10_PRUPE4.4e-11063.31Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa004522mg PE=4 SV=1[more]
B9T0U0_RICCO1.1e-10862.66Cell division protein ftsH, putative OS=Ricinus communis GN=RCOM_0340700 PE=3 SV... [more]
A5AIR6_VITVI2.0e-10760.31Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_032528 PE=4 SV=1[more]
F6H5S7_VITVI2.0e-10760.31Putative uncharacterized protein OS=Vitis vinifera GN=VIT_14s0108g00600 PE=4 SV=... [more]
BLAST of Cp4.1LG03g08090 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G36730.11.0e-9458.16 Pentatricopeptide repeat (PPR) superfamily protein[more]
AT4G21065.11.3e-6539.74 Tetratricopeptide repeat (TPR)-like superfamily protein[more]
AT2G29760.12.9e-6541.29 Tetratricopeptide repeat (TPR)-like superfamily protein[more]
AT5G56310.14.2e-6441.32 Pentatricopeptide repeat (PPR) superfamily protein[more]
AT1G11290.19.4e-6439.75 Pentatricopeptide repeat (PPR) superfamily protein[more]
BLAST of Cp4.1LG03g08090 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778722801|ref|XP_011658571.1|2.1e-16184.48PREDICTED: pentatricopeptide repeat-containing protein At2g36730 isoform X2 [Cuc... [more]
gi|659094371|ref|XP_008448024.1|6.6e-16083.53PREDICTED: pentatricopeptide repeat-containing protein At2g36730 isoform X2 [Cuc... [more]
gi|659094369|ref|XP_008448023.1|2.8e-14281.23PREDICTED: pentatricopeptide repeat-containing protein At2g36730 isoform X1 [Cuc... [more]
gi|449461643|ref|XP_004148551.1|1.1e-14181.55PREDICTED: pentatricopeptide repeat-containing protein At2g36730 isoform X1 [Cuc... [more]
gi|595973476|ref|XP_007217715.1|6.3e-11063.31hypothetical protein PRUPE_ppa004522mg [Prunus persica][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR002885Pentatricopeptide_repeat
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0051301 cell division
biological_process GO:0006508 proteolysis
cellular_component GO:0005575 cellular_component
cellular_component GO:0016020 membrane
molecular_function GO:0003674 molecular_function
molecular_function GO:0005524 ATP binding
molecular_function GO:0004222 metalloendopeptidase activity
molecular_function GO:0008568 microtubule-severing ATPase activity
molecular_function GO:0016787 hydrolase activity
molecular_function GO:0005515 protein binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG03g08090.1Cp4.1LG03g08090.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002885Pentatricopeptide repeatPFAMPF01535PPRcoord: 144..171
score: 0.56coord: 111..137
score: 4.2E-4coord: 181..206
score: 0.
IPR002885Pentatricopeptide repeatPFAMPF13041PPR_2coord: 6..46
score: 5.
IPR002885Pentatricopeptide repeatTIGRFAMsTIGR00756TIGR00756coord: 6..34
score: 4.1E-6coord: 111..142
score: 8.
IPR002885Pentatricopeptide repeatPROFILEPS51375PPRcoord: 178..208
score: 6.774coord: 247..281
score: 5.601coord: 76..106
score: 5.93coord: 1..33
score: 9.142coord: 142..177
score: 6.719coord: 107..141
score: 10
NoneNo IPR availablePANTHERPTHR24015FAMILY NOT NAMEDcoord: 5..288
score: 3.7E
NoneNo IPR availablePANTHERPTHR24015:SF36SUBFAMILY NOT NAMEDcoord: 5..288
score: 3.7E

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG03g08090CmaCh11G010210Cucurbita maxima (Rimu)cmacpeB146
Cp4.1LG03g08090CmaCh14G005890Cucurbita maxima (Rimu)cmacpeB283
Cp4.1LG03g08090CmoCh11G010420Cucurbita moschata (Rifu)cmocpeB123
Cp4.1LG03g08090CmoCh14G005950Cucurbita moschata (Rifu)cmocpeB245
Cp4.1LG03g08090Cla017005Watermelon (97103) v1cpewmB597
Cp4.1LG03g08090ClCG10G015070Watermelon (Charleston Gray)cpewcgB546
Cp4.1LG03g08090Lsi03G014840Bottle gourd (USVL1VR-Ls)cpelsiB503
Cp4.1LG03g08090Bhi11G002490Wax gourdcpewgoB0743
Cp4.1LG03g08090Carg22889Silver-seed gourdcarcpeB0301
Cp4.1LG03g08090Carg09787Silver-seed gourdcarcpeB0613
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Cp4.1LG03g08090Cp4.1LG04g01560Cucurbita pepo (Zucchini)cpecpeB475
The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG03g08090Wax gourdcpewgoB0768
Cp4.1LG03g08090Wax gourdcpewgoB0824
Cp4.1LG03g08090Cucurbita pepo (Zucchini)cpecpeB218
Cp4.1LG03g08090Cucurbita pepo (Zucchini)cpecpeB397
Cp4.1LG03g08090Cucumber (Gy14) v1cgycpeB0426
Cp4.1LG03g08090Cucumber (Gy14) v1cgycpeB0888
Cp4.1LG03g08090Cucurbita maxima (Rimu)cmacpeB327
Cp4.1LG03g08090Wild cucumber (PI 183967)cpecpiB599
Cp4.1LG03g08090Wild cucumber (PI 183967)cpecpiB623
Cp4.1LG03g08090Cucumber (Chinese Long) v2cpecuB597
Cp4.1LG03g08090Cucumber (Chinese Long) v2cpecuB621
Cp4.1LG03g08090Bottle gourd (USVL1VR-Ls)cpelsiB496
Cp4.1LG03g08090Watermelon (Charleston Gray)cpewcgB541
Cp4.1LG03g08090Melon (DHL92) v3.6.1cpemedB679
Cp4.1LG03g08090Watermelon (97103) v1cpewmB592
Cp4.1LG03g08090Melon (DHL92) v3.5.1cpemeB572
Cp4.1LG03g08090Cucumber (Gy14) v2cgybcpeB108
Cp4.1LG03g08090Cucumber (Gy14) v2cgybcpeB395
Cp4.1LG03g08090Melon (DHL92) v3.6.1cpemedB652
Cp4.1LG03g08090Melon (DHL92) v3.6.1cpemedB670
Cp4.1LG03g08090Silver-seed gourdcarcpeB0378
Cp4.1LG03g08090Silver-seed gourdcarcpeB0968
Cp4.1LG03g08090Cucumber (Chinese Long) v3cpecucB0740
Cp4.1LG03g08090Cucumber (Chinese Long) v3cpecucB0747
Cp4.1LG03g08090Cucumber (Chinese Long) v3cpecucB0775