Cp4.1LG03g06780 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG03g06780
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionZinc finger family protein
LocationCp4.1LG03 : 3855358 .. 3855870 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGGACCCAGCCATTTACGACTTCCTTACCCAAACAACAACCGCTTCAAATTCTGCAACCAAAGCTTCCAGAAAGTTCCAGTCTCAATACTCTTCCTCTCGCATTTTTCCATGCCTTTACTGCCCTCGCAAATTTTACACTTCTCAAGCCCTAGGCGGCCACCAAAACGCTCACAAGAGAGAAAGAGCCGCCTCTCGTAAGGCTTTCGCCTCTGAAATTCTTCATCTCGGTTCGCTTCCGCCGCCGCCGCCGCCGCCGACGACGGCTCACCACCATCTTCCGCAGCCTTACACGGTTGTTCCAGCTCCGACTCCGACTCCGACTCCGACTACGACTCCGGCTCCGGCTGATTTTCTCGGCCAGCATTGGTTTAATCAGAATCACTACAGTGCTAACACCACCACCACCACCACCACCACCACCACCGCCTCCGCCTCGCCGGATGCTCTCTCTCCGAACGCCGATACCGCCGTTGAACATGTAACCATCGATCTCACTCTTCGCTTATAA

mRNA sequence

ATGGCGGACCCAGCCATTTACGACTTCCTTACCCAAACAACAACCGCTTCAAATTCTGCAACCAAAGCTTCCAGAAAGTTCCAGTCTCAATACTCTTCCTCTCGCATTTTTCCATGCCTTTACTGCCCTCGCAAATTTTACACTTCTCAAGCCCTAGGCGGCCACCAAAACGCTCACAAGAGAGAAAGAGCCGCCTCTCGTAAGGCTTTCGCCTCTGAAATTCTTCATCTCGGTTCGCTTCCGCCGCCGCCGCCGCCGCCGACGACGGCTCACCACCATCTTCCGCAGCCTTACACGGTTGTTCCAGCTCCGACTCCGACTCCGACTCCGACTACGACTCCGGCTCCGGCTGATTTTCTCGGCCAGCATTGGTTTAATCAGAATCACTACAGTGCTAACACCACCACCACCACCACCACCACCACCACCGCCTCCGCCTCGCCGGATGCTCTCTCTCCGAACGCCGATACCGCCGTTGAACATGTAACCATCGATCTCACTCTTCGCTTATAA

Coding sequence (CDS)

ATGGCGGACCCAGCCATTTACGACTTCCTTACCCAAACAACAACCGCTTCAAATTCTGCAACCAAAGCTTCCAGAAAGTTCCAGTCTCAATACTCTTCCTCTCGCATTTTTCCATGCCTTTACTGCCCTCGCAAATTTTACACTTCTCAAGCCCTAGGCGGCCACCAAAACGCTCACAAGAGAGAAAGAGCCGCCTCTCGTAAGGCTTTCGCCTCTGAAATTCTTCATCTCGGTTCGCTTCCGCCGCCGCCGCCGCCGCCGACGACGGCTCACCACCATCTTCCGCAGCCTTACACGGTTGTTCCAGCTCCGACTCCGACTCCGACTCCGACTACGACTCCGGCTCCGGCTGATTTTCTCGGCCAGCATTGGTTTAATCAGAATCACTACAGTGCTAACACCACCACCACCACCACCACCACCACCACCGCCTCCGCCTCGCCGGATGCTCTCTCTCCGAACGCCGATACCGCCGTTGAACATGTAACCATCGATCTCACTCTTCGCTTATAA

Protein sequence

MADPAIYDFLTQTTTASNSATKASRKFQSQYSSSRIFPCLYCPRKFYTSQALGGHQNAHKRERAASRKAFASEILHLGSLPPPPPPPTTAHHHLPQPYTVVPAPTPTPTPTTTPAPADFLGQHWFNQNHYSANTTTTTTTTTTASASPDALSPNADTAVEHVTIDLTLRL
Homology
[Close]
BLAST of Cp4.1LG03g06780 vs. Swiss-Prot
Match: KNU_ARATH (Zinc finger protein KNUCKLES OS=Arabidopsis thaliana GN=KNU PE=1 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 2.0e-11
Identity = 42/82 (51.22%), Postives = 52/82 (63.41%), Query Frame = 1 

Query: 4  PAIYDFLTQTTTASNSATKASRKFQSQYSSSRIFPCLYCPRKFYTSQALGGHQNAHKRER 63
          P+   F+    T S+S  + S    +  +S R+FPC YCPRKFYTSQALGGHQNAHKRER
Sbjct: 6  PSYLHFVGPAKTRSSSK-RHSFSSSAHPASHRLFPCQYCPRKFYTSQALGGHQNAHKRER 65

Query: 64 AASRKAFASEILHLGSLPPPPP 86
          AA+R+       +LG L   PP
Sbjct: 66 AAARR-------NLGVLANSPP 79

[Close]
BLAST of Cp4.1LG03g06780 vs. Swiss-Prot
Match: ZFP7_ARATH (Zinc finger protein 7 OS=Arabidopsis thaliana GN=ZFP7 PE=2 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 5.0e-10
Identity = 33/68 (48.53%), Postives = 43/68 (63.24%), Query Frame = 1 

Query: 32  SSSRIFPCLYCPRKFYTSQALGGHQNAHKRERAASRKAFASEILHLGSLPPPPPPPTTAH 91
           ++ R+F C YC RKFY+SQALGGHQNAHKRER  +++A     +H+G +          H
Sbjct: 54  ANPRVFSCNYCRRKFYSSQALGGHQNAHKRERTMAKRA-----MHMGRM--------FGH 108

Query: 92  HHLPQPYT 100
           HH P  YT
Sbjct: 114 HHRPYTYT 108

[Close]
BLAST of Cp4.1LG03g06780 vs. Swiss-Prot
Match: ZFP1_ARATH (Zinc finger protein 1 OS=Arabidopsis thaliana GN=ZFP1 PE=2 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 3.3e-09
Identity = 34/72 (47.22%), Postives = 46/72 (63.89%), Query Frame = 1 

Query: 10  LTQTTTASNSATKASRKFQSQYSSSRIFPCLYCPRKFYTSQALGGHQNAHKRERAASRKA 69
           L  +   S+S+T   +  Q Q +  R+F C YC RKFY+SQALGGHQNAHKRER  +++ 
Sbjct: 41  LIDSFKTSSSSTSHHQHQQEQLADPRVFSCNYCQRKFYSSQALGGHQNAHKRERTLAKRG 100

Query: 70  FASEILHLGSLP 82
              + + L SLP
Sbjct: 101 QYYK-MTLSSLP 111

[Close]
BLAST of Cp4.1LG03g06780 vs. Swiss-Prot
Match: ZFP4_ARATH (Zinc finger protein 4 OS=Arabidopsis thaliana GN=ZFP4 PE=2 SV=2)

HSP 1 Score: 61.6 bits (148), Expect = 9.5e-09
Identity = 29/56 (51.79%), Postives = 39/56 (69.64%), Query Frame = 1 

Query: 14  TTASNSATKASRKFQSQYSSSRIFPCLYCPRKFYTSQALGGHQNAHKRERAASRKA 70
           ++ S S+    ++ Q    S R+F C YC RKFY+SQALGGHQNAHKRER  +++A
Sbjct: 62  SSTSESSNPEQQQQQQPSVSKRVFSCNYCQRKFYSSQALGGHQNAHKRERTLAKRA 117

[Close]
BLAST of Cp4.1LG03g06780 vs. Swiss-Prot
Match: LATE_ARATH (Protein LATE FLOWERING OS=Arabidopsis thaliana GN=LATE PE=2 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 2.8e-08
Identity = 44/98 (44.90%), Postives = 56/98 (57.14%), Query Frame = 1 

Query: 21  TKASRKFQSQYSSSRIFPCLYCPRKFYTSQALGGHQNAHKRERAASRKA-----FASEIL 80
           +K + K     SS RIFPCL+C RKF++SQALGGHQNAHK+ER A+R+A     F +   
Sbjct: 19  SKEANKTDENTSSLRIFPCLFCSRKFHSSQALGGHQNAHKKERTAARRAKRAYDFVNNND 78

Query: 81  HLGSLPPPPPPPTTAHHHL-----PQPYTVVPAPTPTP 109
            L +LP     P  + HHL     P   +V   PT  P
Sbjct: 79  FLHTLPVFLSSP--SQHHLTILGYPASASVACFPTVHP 114

[Close]
BLAST of Cp4.1LG03g06780 vs. TrEMBL
Match: A0A0A0LDF1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G509430 PE=4 SV=1)

HSP 1 Score: 149.4 bits (376), Expect = 3.8e-33
Identity = 102/185 (55.14%), Postives = 116/185 (62.70%), Query Frame = 1 

Query: 1   MADPAIYDFLTQTTTA--SNSATKASRKFQSQ--YSSSRIFPCLYCPRKFYTSQALGGHQ 60
           MADP IYDFL+QTTTA  SN++T   +   S+  +S SRIFPCLYCPRKFYTSQALGGHQ
Sbjct: 1   MADPTIYDFLSQTTTAPPSNNSTTLPKAASSRKSHSQSRIFPCLYCPRKFYTSQALGGHQ 60

Query: 61  NAHKRER-AASRKAFA---SEILHLG-----SLPPPPPPPTTAHHHLPQPYTVVPAPTPT 120
           NAHKRER AASRKA A   +EILHLG       PPPPPP T  HHH   P    P PTP 
Sbjct: 61  NAHKRERAAASRKAAALTTTEILHLGCSSLQHSPPPPPPTTITHHHHHLPPHFYPLPTP- 120

Query: 121 PTPTTTPAPADFLGQHWFNQNHYSANTTTTTTTTTTASASPDALSP--NADTAVEHVTID 171
                   P+     H F+ N++  NT          SASPD LSP  + D A+EH+ ID
Sbjct: 121 --------PSFLDHHHSFHHNNFCPNT----------SASPDTLSPTNSTDPALEHLNID 166

[Close]
BLAST of Cp4.1LG03g06780 vs. TrEMBL
Match: A0A061ED83_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_017291 PE=4 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 1.8e-14
Identity = 67/170 (39.41%), Postives = 89/170 (52.35%), Query Frame = 1 

Query: 1   MADPAIYDFLTQTTTASNSATKASRKFQSQYSSSRIFPCLYCPRKFYTSQALGGHQNAHK 60
           MADP++Y+F  Q ++A     K  ++  S  + +R+F CLYCPRKFYTSQALGGHQNAHK
Sbjct: 1   MADPSMYNFFNQPSSAPKPTKKQPQR-ASPSAPTRLFQCLYCPRKFYTSQALGGHQNAHK 60

Query: 61  RERAASRKAFASEILHLGSLPPPPPPPTTAHHHLPQPYTVVPAPTPTPTPTTTPAPADFL 120
           RERAA+R+ F            P   P   + H   PYT  PA  P   P      A +L
Sbjct: 61  RERAAARRKF------------PVDQPQQFNLHPQNPYTRFPAEPPMDHP-----GAPYL 120

Query: 121 GQHWFNQNHYSANTTTTTTTTTTASASPDALSPNADTAVEHVTIDLTLRL 171
            Q W    H    +    +   +  +SP+  SP+ D   +   +DLTLRL
Sbjct: 121 DQ-WLEPFHSHLPSGGLVSQGFSGVSSPETFSPSTDVD-DSANVDLTLRL 150

[Close]
BLAST of Cp4.1LG03g06780 vs. TrEMBL
Match: B9GFF8_POPTR (Zinc finger family protein OS=Populus trichocarpa GN=POPTR_0001s33210g PE=4 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 1.2e-13
Identity = 52/110 (47.27%), Postives = 69/110 (62.73%), Query Frame = 1 

Query: 1   MADPAIYDFLTQ------TTTASNSATKASRKFQSQYSSSRIFPCLYCPRKFYTSQALGG 60
           MADP+I++FL        ++++S+  TK S     Q SSSR FPCLYCPR+FYTSQALGG
Sbjct: 1   MADPSIFNFLNHQHQQYPSSSSSSKPTKKSSTNLPQPSSSRHFPCLYCPRRFYTSQALGG 60

Query: 61  HQNAHKRERAASRKAFASEILHLGSLPPPPPPPTTAHHHLPQPYTVVPAP 105
           HQNAHKRERAA R+   +    + + P    P +  +H+LP P +    P
Sbjct: 61  HQNAHKRERAALRRNNTTLNTSISTDPSLIIPSSFLNHNLPPPASTPAVP 110

[Close]
BLAST of Cp4.1LG03g06780 vs. TrEMBL
Match: B9RH19_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1446140 PE=4 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 9.8e-13
Identity = 75/205 (36.59%), Postives = 95/205 (46.34%), Query Frame = 1 

Query: 1   MADPAIYDFLTQTTTASNS-------------ATKASRKF----QSQYSSSRIFPCLYCP 60
           MADP+IY+F  Q                    +++ SRK     Q   SSSR+F CLYCP
Sbjct: 1   MADPSIYNFFNQQQNQPQQQQQQQQQEQLPFPSSRPSRKNPIPQQPPTSSSRLFQCLYCP 60

Query: 61  RKFYTSQALGGHQNAHKRERAASRKAFASEILHLGSLPPPPPPPTTAHHHLPQPYTVVPA 120
           RKFYTSQALGGHQNAHKRERAA+ +          +L    PP  +AH+  P PY +   
Sbjct: 61  RKFYTSQALGGHQNAHKRERAAAHR----------NLSLQSPPNISAHYFPPDPYMM--- 120

Query: 121 PTPTPTPTTTPAPADFLGQHWFNQNHY---SANTTTT---------------TTTTTTAS 171
                     P  A FL  H    +HY       T T               +T ++  +
Sbjct: 121 --------NHPDAAPFLDDH----HHYYCLEPKQTMTDYQFPSPPQVGFCGGSTASSALN 180

[Close]
BLAST of Cp4.1LG03g06780 vs. TrEMBL
Match: M5WUF2_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa018767mg PE=4 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 1.7e-12
Identity = 42/76 (55.26%), Postives = 50/76 (65.79%), Query Frame = 1 

Query: 34  SRIFPCLYCPRKFYTSQALGGHQNAHKRERAASRKAFAS----------EILHLGSL--- 93
           +R+FPC YC R+FYTSQALGGHQNAHKRERAA+R++  +             H   L   
Sbjct: 72  NRLFPCRYCSRQFYTSQALGGHQNAHKRERAAARRSVVAGGSYPTGATYSPHHHAPLNAP 131

Query: 94  -PPPPPPPTTAHHHLP 96
            PPPPPPP  +HHHLP
Sbjct: 132 PPPPPPPPPPSHHHLP 147

[Close]
BLAST of Cp4.1LG03g06780 vs. TAIR10
Match: AT5G14010.1 (AT5G14010.1 C2H2 and C2HC zinc fingers superfamily protein)

HSP 1 Score: 70.5 bits (171), Expect = 1.1e-12
Identity = 42/82 (51.22%), Postives = 52/82 (63.41%), Query Frame = 1 

Query: 4  PAIYDFLTQTTTASNSATKASRKFQSQYSSSRIFPCLYCPRKFYTSQALGGHQNAHKRER 63
          P+   F+    T S+S  + S    +  +S R+FPC YCPRKFYTSQALGGHQNAHKRER
Sbjct: 6  PSYLHFVGPAKTRSSSK-RHSFSSSAHPASHRLFPCQYCPRKFYTSQALGGHQNAHKRER 65

Query: 64 AASRKAFASEILHLGSLPPPPP 86
          AA+R+       +LG L   PP
Sbjct: 66 AAARR-------NLGVLANSPP 79

[Close]
BLAST of Cp4.1LG03g06780 vs. TAIR10
Match: AT1G24625.1 (AT1G24625.1 zinc finger protein 7)

HSP 1 Score: 65.9 bits (159), Expect = 2.8e-11
Identity = 33/68 (48.53%), Postives = 43/68 (63.24%), Query Frame = 1 

Query: 32  SSSRIFPCLYCPRKFYTSQALGGHQNAHKRERAASRKAFASEILHLGSLPPPPPPPTTAH 91
           ++ R+F C YC RKFY+SQALGGHQNAHKRER  +++A     +H+G +          H
Sbjct: 54  ANPRVFSCNYCRRKFYSSQALGGHQNAHKRERTMAKRA-----MHMGRM--------FGH 108

Query: 92  HHLPQPYT 100
           HH P  YT
Sbjct: 114 HHRPYTYT 108

[Close]
BLAST of Cp4.1LG03g06780 vs. TAIR10
Match: AT1G80730.1 (AT1G80730.1 zinc-finger protein 1)

HSP 1 Score: 63.2 bits (152), Expect = 1.8e-10
Identity = 34/72 (47.22%), Postives = 46/72 (63.89%), Query Frame = 1 

Query: 10  LTQTTTASNSATKASRKFQSQYSSSRIFPCLYCPRKFYTSQALGGHQNAHKRERAASRKA 69
           L  +   S+S+T   +  Q Q +  R+F C YC RKFY+SQALGGHQNAHKRER  +++ 
Sbjct: 41  LIDSFKTSSSSTSHHQHQQEQLADPRVFSCNYCQRKFYSSQALGGHQNAHKRERTLAKRG 100

Query: 70  FASEILHLGSLP 82
              + + L SLP
Sbjct: 101 QYYK-MTLSSLP 111

[Close]
BLAST of Cp4.1LG03g06780 vs. TAIR10
Match: AT1G66140.1 (AT1G66140.1 zinc finger protein 4)

HSP 1 Score: 61.6 bits (148), Expect = 5.3e-10
Identity = 29/56 (51.79%), Postives = 39/56 (69.64%), Query Frame = 1 

Query: 14  TTASNSATKASRKFQSQYSSSRIFPCLYCPRKFYTSQALGGHQNAHKRERAASRKA 70
           ++ S S+    ++ Q    S R+F C YC RKFY+SQALGGHQNAHKRER  +++A
Sbjct: 62  SSTSESSNPEQQQQQQPSVSKRVFSCNYCQRKFYSSQALGGHQNAHKRERTLAKRA 117

[Close]
BLAST of Cp4.1LG03g06780 vs. TAIR10
Match: AT5G48890.1 (AT5G48890.1 C2H2-like zinc finger protein)

HSP 1 Score: 60.1 bits (144), Expect = 1.6e-09
Identity = 44/98 (44.90%), Postives = 56/98 (57.14%), Query Frame = 1 

Query: 21  TKASRKFQSQYSSSRIFPCLYCPRKFYTSQALGGHQNAHKRERAASRKA-----FASEIL 80
           +K + K     SS RIFPCL+C RKF++SQALGGHQNAHK+ER A+R+A     F +   
Sbjct: 19  SKEANKTDENTSSLRIFPCLFCSRKFHSSQALGGHQNAHKKERTAARRAKRAYDFVNNND 78

Query: 81  HLGSLPPPPPPPTTAHHHL-----PQPYTVVPAPTPTP 109
            L +LP     P  + HHL     P   +V   PT  P
Sbjct: 79  FLHTLPVFLSSP--SQHHLTILGYPASASVACFPTVHP 114

[Close]
BLAST of Cp4.1LG03g06780 vs. NCBI nr
Match: gi|659098600|ref|XP_008450219.1| (PREDICTED: zinc finger protein KNUCKLES [Cucumis melo])

HSP 1 Score: 154.8 bits (390), Expect = 1.3e-34
Identity = 108/190 (56.84%), Postives = 119/190 (62.63%), Query Frame = 1 

Query: 1   MADPAIYDFLTQTTTAS---NSATKAS-----RKFQSQYSSSRIFPCLYCPRKFYTSQAL 60
           MADP IYDFL+QTTTA+   NS T A+        +  +S SRIFPCLYCPRKFYTSQAL
Sbjct: 1   MADPTIYDFLSQTTTAAPSNNSTTTATVLPKAASSRKSHSQSRIFPCLYCPRKFYTSQAL 60

Query: 61  GGHQNAHKRER-AASRKAFA---SEILHLG------SLPPPPPPPTTAHHHLPQPYTVVP 120
           GGHQNAHKRER AASRKA A   SEILHLG      S PPPPP  TT HHH   P    P
Sbjct: 61  GGHQNAHKRERAAASRKAAALTTSEILHLGCSSLQHSPPPPPPTITTTHHHHHLPPHFYP 120

Query: 121 APTPTPTPTTTPAPADFLGQHW-FNQNHYSANTTTTTTTTTTASASPDALSP-NADTAVE 171
            PTP P+         FL  H  F+ N++  NT          SASPDALSP N D A+E
Sbjct: 121 LPTPVPS---------FLDHHHSFHHNNFCTNT----------SASPDALSPTNTDPALE 171

[Close]
BLAST of Cp4.1LG03g06780 vs. NCBI nr
Match: gi|700202963|gb|KGN58096.1| (hypothetical protein Csa_3G509430 [Cucumis sativus])

HSP 1 Score: 149.4 bits (376), Expect = 5.5e-33
Identity = 102/185 (55.14%), Postives = 116/185 (62.70%), Query Frame = 1 

Query: 1   MADPAIYDFLTQTTTA--SNSATKASRKFQSQ--YSSSRIFPCLYCPRKFYTSQALGGHQ 60
           MADP IYDFL+QTTTA  SN++T   +   S+  +S SRIFPCLYCPRKFYTSQALGGHQ
Sbjct: 1   MADPTIYDFLSQTTTAPPSNNSTTLPKAASSRKSHSQSRIFPCLYCPRKFYTSQALGGHQ 60

Query: 61  NAHKRER-AASRKAFA---SEILHLG-----SLPPPPPPPTTAHHHLPQPYTVVPAPTPT 120
           NAHKRER AASRKA A   +EILHLG       PPPPPP T  HHH   P    P PTP 
Sbjct: 61  NAHKRERAAASRKAAALTTTEILHLGCSSLQHSPPPPPPTTITHHHHHLPPHFYPLPTP- 120

Query: 121 PTPTTTPAPADFLGQHWFNQNHYSANTTTTTTTTTTASASPDALSP--NADTAVEHVTID 171
                   P+     H F+ N++  NT          SASPD LSP  + D A+EH+ ID
Sbjct: 121 --------PSFLDHHHSFHHNNFCPNT----------SASPDTLSPTNSTDPALEHLNID 166

[Close]
BLAST of Cp4.1LG03g06780 vs. NCBI nr
Match: gi|1009152155|ref|XP_015893941.1| (PREDICTED: zinc finger protein KNUCKLES [Ziziphus jujuba])

HSP 1 Score: 96.7 bits (239), Expect = 4.2e-17
Identity = 60/133 (45.11%), Postives = 74/133 (55.64%), Query Frame = 1 

Query: 1   MAD-PAIYDFLTQTTTASNSAT-KASRKFQSQYSSSRIFPCLYCPRKFYTSQALGGHQNA 60
           MAD P +YDFL Q  ++S+  T K S +     + SR+FPCLYCPRKFYTSQALGGHQNA
Sbjct: 1   MADNPTVYDFLNQLPSSSSKPTRKTSSQSHHPPTPSRLFPCLYCPRKFYTSQALGGHQNA 60

Query: 61  HKRERAASRKAFASEILHLGSLPPPPPPPTTAHHHLPQPYTVVPAPTPTPTPTTTPAPAD 120
           HKRERAA+R+ + +E  HL  L P PP    A H                          
Sbjct: 61  HKRERAAARRGYPAE-THLARLQPEPPVEQGAAH------------------------GR 108

Query: 121 FLGQHWFNQNHYS 132
           FL Q+W + +H S
Sbjct: 121 FLDQYWLDHSHSS 108

[Close]
BLAST of Cp4.1LG03g06780 vs. NCBI nr
Match: gi|590647673|ref|XP_007031965.1| (Uncharacterized protein TCM_017291 [Theobroma cacao])

HSP 1 Score: 87.4 bits (215), Expect = 2.6e-14
Identity = 67/170 (39.41%), Postives = 89/170 (52.35%), Query Frame = 1 

Query: 1   MADPAIYDFLTQTTTASNSATKASRKFQSQYSSSRIFPCLYCPRKFYTSQALGGHQNAHK 60
           MADP++Y+F  Q ++A     K  ++  S  + +R+F CLYCPRKFYTSQALGGHQNAHK
Sbjct: 1   MADPSMYNFFNQPSSAPKPTKKQPQR-ASPSAPTRLFQCLYCPRKFYTSQALGGHQNAHK 60

Query: 61  RERAASRKAFASEILHLGSLPPPPPPPTTAHHHLPQPYTVVPAPTPTPTPTTTPAPADFL 120
           RERAA+R+ F            P   P   + H   PYT  PA  P   P      A +L
Sbjct: 61  RERAAARRKF------------PVDQPQQFNLHPQNPYTRFPAEPPMDHP-----GAPYL 120

Query: 121 GQHWFNQNHYSANTTTTTTTTTTASASPDALSPNADTAVEHVTIDLTLRL 171
            Q W    H    +    +   +  +SP+  SP+ D   +   +DLTLRL
Sbjct: 121 DQ-WLEPFHSHLPSGGLVSQGFSGVSSPETFSPSTDVD-DSANVDLTLRL 150

[Close]
BLAST of Cp4.1LG03g06780 vs. NCBI nr
Match: gi|743904781|ref|XP_011045772.1| (PREDICTED: zinc finger protein 7-like [Populus euphratica])

HSP 1 Score: 85.1 bits (209), Expect = 1.3e-13
Identity = 52/110 (47.27%), Postives = 69/110 (62.73%), Query Frame = 1 

Query: 1   MADPAIYDFLTQ------TTTASNSATKASRKFQSQYSSSRIFPCLYCPRKFYTSQALGG 60
           MADP+I++FL        ++++S+  TK S     Q SSSR FPCLYCPR+FYTSQALGG
Sbjct: 1   MADPSIFNFLNHQHQQYPSSSSSSKPTKKSSTSLPQPSSSRHFPCLYCPRRFYTSQALGG 60

Query: 61  HQNAHKRERAASRKAFASEILHLGSLPPPPPPPTTAHHHLPQPYTVVPAP 105
           HQNAHKRERAA R+   +    + + P    P +  +H+LP P +    P
Sbjct: 61  HQNAHKRERAALRRNNTTLNTSISTDPSLIIPSSFLNHNLPPPASTPAVP 110

The following BLAST results are available for this feature:
BLAST of Cp4.1LG03g06780 vs. Swiss-Prot
Match NameE-valueIdentityDescription
KNU_ARATH2.0e-1151.22Zinc finger protein KNUCKLES OS=Arabidopsis thaliana GN=KNU PE=1 SV=1[more]
ZFP7_ARATH5.0e-1048.53Zinc finger protein 7 OS=Arabidopsis thaliana GN=ZFP7 PE=2 SV=1[more]
ZFP1_ARATH3.3e-0947.22Zinc finger protein 1 OS=Arabidopsis thaliana GN=ZFP1 PE=2 SV=1[more]
ZFP4_ARATH9.5e-0951.79Zinc finger protein 4 OS=Arabidopsis thaliana GN=ZFP4 PE=2 SV=2[more]
LATE_ARATH2.8e-0844.90Protein LATE FLOWERING OS=Arabidopsis thaliana GN=LATE PE=2 SV=1[more]
BLAST of Cp4.1LG03g06780 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LDF1_CUCSA3.8e-3355.14Uncharacterized protein OS=Cucumis sativus GN=Csa_3G509430 PE=4 SV=1[more]
A0A061ED83_THECC1.8e-1439.41Uncharacterized protein OS=Theobroma cacao GN=TCM_017291 PE=4 SV=1[more]
B9GFF8_POPTR1.2e-1347.27Zinc finger family protein OS=Populus trichocarpa GN=POPTR_0001s33210g PE=4 SV=1[more]
B9RH19_RICCO9.8e-1336.59Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1446140 PE=4 SV=1[more]
M5WUF2_PRUPE1.7e-1255.26Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa018767mg PE=4 SV=1[more]
BLAST of Cp4.1LG03g06780 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G14010.11.1e-1251.22 C2H2 and C2HC zinc fingers superfamily protein[more]
AT1G24625.12.8e-1148.53 zinc finger protein 7[more]
AT1G80730.11.8e-1047.22 zinc-finger protein 1[more]
AT1G66140.15.3e-1051.79 zinc finger protein 4[more]
AT5G48890.11.6e-0944.90 C2H2-like zinc finger protein[more]
BLAST of Cp4.1LG03g06780 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659098600|ref|XP_008450219.1|1.3e-3456.84PREDICTED: zinc finger protein KNUCKLES [Cucumis melo][more]
gi|700202963|gb|KGN58096.1|5.5e-3355.14hypothetical protein Csa_3G509430 [Cucumis sativus][more]
gi|1009152155|ref|XP_015893941.1|4.2e-1745.11PREDICTED: zinc finger protein KNUCKLES [Ziziphus jujuba][more]
gi|590647673|ref|XP_007031965.1|2.6e-1439.41Uncharacterized protein TCM_017291 [Theobroma cacao][more]
gi|743904781|ref|XP_011045772.1|1.3e-1347.27PREDICTED: zinc finger protein 7-like [Populus euphratica][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0046872metal ion binding
Vocabulary: INTERPRO
TermDefinition
IPR007087Zinc finger, C2H2
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009908 flower development
biological_process GO:0050789 regulation of biological process
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0046872 metal ion binding
molecular_function GO:0003676 nucleic acid binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG03g06780.1Cp4.1LG03g06780.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007087Zinc finger, C2H2PROSITEPS00028ZINC_FINGER_C2H2_1coord: 39..59
scor
IPR007087Zinc finger, C2H2PROFILEPS50157ZINC_FINGER_C2H2_2coord: 37..64
score: 10
NoneNo IPR availableunknownSSF57667beta-beta-alpha zinc fingerscoord: 34..64
score: 1.0

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG03g06780CmaCh14G007500Cucurbita maxima (Rimu)cmacpeB283
Cp4.1LG03g06780CmaCh11G015380Cucurbita maxima (Rimu)cmacpeB145
Cp4.1LG03g06780CmoCh11G015840Cucurbita moschata (Rifu)cmocpeB124
Cp4.1LG03g06780CmoCh14G007640Cucurbita moschata (Rifu)cmocpeB245
Cp4.1LG03g06780ClCG05G013960Watermelon (Charleston Gray)cpewcgB555
Cp4.1LG03g06780Lsi07G014960Bottle gourd (USVL1VR-Ls)cpelsiB518
Cp4.1LG03g06780Carg15531Silver-seed gourdcarcpeB0518
Cp4.1LG03g06780Carg09634Silver-seed gourdcarcpeB0613
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Cp4.1LG03g06780Cp4.1LG04g06170Cucurbita pepo (Zucchini)cpecpeB477
The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG03g06780Melon (DHL92) v3.6.1cpemedB695
Cp4.1LG03g06780Cucumber (Chinese Long) v3cpecucB0754
Cp4.1LG03g06780Cucumber (Chinese Long) v3cpecucB0760
Cp4.1LG03g06780Wax gourdcpewgoB0794
Cp4.1LG03g06780Wax gourdcpewgoB0803
Cp4.1LG03g06780Cucumber (Gy14) v1cgycpeB0416
Cp4.1LG03g06780Wild cucumber (PI 183967)cpecpiB608
Cp4.1LG03g06780Cucumber (Chinese Long) v2cpecuB605
Cp4.1LG03g06780Bottle gourd (USVL1VR-Ls)cpelsiB511
Cp4.1LG03g06780Watermelon (Charleston Gray)cpewcgB560
Cp4.1LG03g06780Watermelon (97103) v1cpewmB609
Cp4.1LG03g06780Melon (DHL92) v3.5.1cpemeB582
Cp4.1LG03g06780Melon (DHL92) v3.5.1cpemeB584
Cp4.1LG03g06780Cucumber (Gy14) v2cgybcpeB402
Cp4.1LG03g06780Cucumber (Gy14) v2cgybcpeB407