Cp4.1LG03g06390 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG03g06390
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionUnknown protein
LocationCp4.1LG03 : 4148273 .. 4148545 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGATGACACCACCAGGGAAGACGCCGGGGAAGAACATTGCCGGATTGTCGGCGAATTCGAAAGGGAGTAAGTCAGCGAGTGCAGGGGGAAAAAGGGTCGGCAGATTGACCGACGTGAGGAAGAGCTACGCCGGATTTGAGGAGGTGAAGGGGCTTACAACGGCGGCGGCGAACTCCATTAATGGCGAAAACAGAGGAAGGAGAGGGAAAACTGTATTGGGAGTTAAAACAGATTTGAAACAAAATCATTTCAAGAACAGAGAGTTTTGA

mRNA sequence

ATGGAGATGACACCACCAGGGAAGACGCCGGGGAAGAACATTGCCGGATTGTCGGCGAATTCGAAAGGGAGTAAGTCAGCGAGTGCAGGGGGAAAAAGGGTCGGCAGATTGACCGACGTGAGGAAGAGCTACGCCGGATTTGAGGAGGTGAAGGGGCTTACAACGGCGGCGGCGAACTCCATTAATGGCGAAAACAGAGGAAGGAGAGGGAAAACTGTATTGGGAGTTAAAACAGATTTGAAACAAAATCATTTCAAGAACAGAGAGTTTTGA

Coding sequence (CDS)

ATGGAGATGACACCACCAGGGAAGACGCCGGGGAAGAACATTGCCGGATTGTCGGCGAATTCGAAAGGGAGTAAGTCAGCGAGTGCAGGGGGAAAAAGGGTCGGCAGATTGACCGACGTGAGGAAGAGCTACGCCGGATTTGAGGAGGTGAAGGGGCTTACAACGGCGGCGGCGAACTCCATTAATGGCGAAAACAGAGGAAGGAGAGGGAAAACTGTATTGGGAGTTAAAACAGATTTGAAACAAAATCATTTCAAGAACAGAGAGTTTTGA

Protein sequence

MEMTPPGKTPGKNIAGLSANSKGSKSASAGGKRVGRLTDVRKSYAGFEEVKGLTTAAANSINGENRGRRGKTVLGVKTDLKQNHFKNREF
Homology
[Close]
BLAST of Cp4.1LG03g06390 vs. TrEMBL
Match: A0A0A0L9P8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G258110 PE=4 SV=1)

HSP 1 Score: 112.8 bits (281), Expect = 2.1e-22
Identity = 63/79 (79.75%), Postives = 68/79 (86.08%), Query Frame = 1 

Query: 1   MEMTPPGKTPGKNIAGLSANSKGSKSASAGGKRVGRLTDVRKSYAGFEEVKGLTTAAANS 60
           MEMTPPGKT GKNI GLS  S+GSKSASAG KR G LT VRKSYAGFEE+KG +TAAAN+
Sbjct: 124 MEMTPPGKTWGKNIGGLSTTSRGSKSASAGEKRGGGLTAVRKSYAGFEELKGFSTAAANA 183

Query: 61  INGENR--GRRGKTVLGVK 78
           INGENR  GRRGKTVLGV+
Sbjct: 184 INGENRKGGRRGKTVLGVR 202

[Close]
BLAST of Cp4.1LG03g06390 vs. TrEMBL
Match: U5GIG0_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0005s15480g PE=4 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 2.6e-12
Identity = 49/85 (57.65%), Postives = 57/85 (67.06%), Query Frame = 1 

Query: 2   EMTPPGKTPGKNIAGLSANSKGSKSASAGGKRVGRLTDVRKSYAGFEEVKGLTTAAANSI 61
           E+TPP K   K   GL +NS+GSKSA+AG KR G L   RKSY   EE+KGL+ AAAN+I
Sbjct: 134 ELTPPSKNVLKMNNGLLSNSRGSKSANAGEKRNGGLLMARKSYVSVEELKGLSLAAANAI 193

Query: 62  NGENRGRR-------GKTVLGVKTD 80
           NGENRG R       GKTVLG + D
Sbjct: 194 NGENRGNRGGRGIGTGKTVLGYRHD 218

[Close]
BLAST of Cp4.1LG03g06390 vs. TrEMBL
Match: B9RSM0_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1726900 PE=4 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 8.3e-11
Identity = 44/81 (54.32%), Postives = 57/81 (70.37%), Query Frame = 1 

Query: 2   EMTPPGKTPGKNIAGLSANSKGSKSASAGGKRVGRLTDVRKSYAGFEEVKGLTTAAANSI 61
           E+TPP K+    + G+  NS+GSKSA+AG K+ G +   RKSYA  EE+KGL+ AAA +I
Sbjct: 122 ELTPPSKSTWSKVNGILTNSRGSKSANAGDKKNGLMA--RKSYASLEELKGLSMAAATAI 181

Query: 62  NGENRGRR-----GKTVLGVK 78
           NGE+RGRR     GKTVLG +
Sbjct: 182 NGESRGRRGGRGIGKTVLGYR 200

[Close]
BLAST of Cp4.1LG03g06390 vs. TrEMBL
Match: A0A067KA19_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12998 PE=4 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 5.4e-10
Identity = 45/82 (54.88%), Postives = 59/82 (71.95%), Query Frame = 1 

Query: 1   MEMTPPGKTPGKNIAGLSANSKGSKSASAGGKRVGRLTDVRKSYAGFEEVKGLTTAAANS 60
           +E+TPP K   K + G+ +NS+GSKSASAG K+ G +   RKSYA  EE+KGL+ AAA++
Sbjct: 126 LELTPPSKNWAK-VNGILSNSRGSKSASAGEKKTGIM--ARKSYASVEELKGLSMAAASA 185

Query: 61  INGENRGRR-----GKTVLGVK 78
           I+GENRG R     GKTVLG +
Sbjct: 186 ISGENRGGRVGRGIGKTVLGYR 204

[Close]
BLAST of Cp4.1LG03g06390 vs. TrEMBL
Match: M5XDN8_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa014753mg PE=4 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 4.6e-09
Identity = 47/86 (54.65%), Postives = 58/86 (67.44%), Query Frame = 1 

Query: 1   MEMTPPGKTPGKNIAGLSANSKGSKSASAGGKRV--GRLTDVRKSYAGFEEVKGLTTAAA 60
           +EMTPP K+  K   G+ +NS+GSKSASAG KR   G     RKSYA  EE+KGL++AAA
Sbjct: 137 LEMTPPAKSWSK-ANGVLSNSRGSKSASAGEKRYNNGGGLMARKSYASMEELKGLSSAAA 196

Query: 61  NSINGENRGRRG-------KTVLGVK 78
           N+I+GENRG R        KTVLG +
Sbjct: 197 NAISGENRGGRNGNGRAIPKTVLGYR 221

[Close]
BLAST of Cp4.1LG03g06390 vs. NCBI nr
Match: gi|778680592|ref|XP_011651352.1| (PREDICTED: uncharacterized protein LOC101205045 [Cucumis sativus])

HSP 1 Score: 112.8 bits (281), Expect = 3.0e-22
Identity = 63/79 (79.75%), Postives = 68/79 (86.08%), Query Frame = 1 

Query: 1   MEMTPPGKTPGKNIAGLSANSKGSKSASAGGKRVGRLTDVRKSYAGFEEVKGLTTAAANS 60
           MEMTPPGKT GKNI GLS  S+GSKSASAG KR G LT VRKSYAGFEE+KG +TAAAN+
Sbjct: 124 MEMTPPGKTWGKNIGGLSTTSRGSKSASAGEKRGGGLTAVRKSYAGFEELKGFSTAAANA 183

Query: 61  INGENR--GRRGKTVLGVK 78
           INGENR  GRRGKTVLGV+
Sbjct: 184 INGENRKGGRRGKTVLGVR 202

[Close]
BLAST of Cp4.1LG03g06390 vs. NCBI nr
Match: gi|659123205|ref|XP_008461547.1| (PREDICTED: uncharacterized protein LOC103500118 [Cucumis melo])

HSP 1 Score: 92.4 bits (228), Expect = 4.2e-16
Identity = 49/64 (76.56%), Postives = 54/64 (84.38%), Query Frame = 1 

Query: 1   MEMTPPGKTPGKNIAGLSANSKGSKSASAGGKRVGRLTDVRKSYAGFEEVKGLTTAAANS 60
           MEMTPPGKT GKN+ GLS NS+GSKSASAG KR G LT VRKSYAGFEE+KG +TA A +
Sbjct: 125 MEMTPPGKTWGKNMGGLSTNSRGSKSASAGEKRGGGLTTVRKSYAGFEELKGFSTATAKA 184

Query: 61  INGE 65
           INGE
Sbjct: 185 INGE 188

[Close]
BLAST of Cp4.1LG03g06390 vs. NCBI nr
Match: gi|566171569|ref|XP_006383435.1| (hypothetical protein POPTR_0005s15480g [Populus trichocarpa])

HSP 1 Score: 79.3 bits (194), Expect = 3.7e-12
Identity = 49/85 (57.65%), Postives = 57/85 (67.06%), Query Frame = 1 

Query: 2   EMTPPGKTPGKNIAGLSANSKGSKSASAGGKRVGRLTDVRKSYAGFEEVKGLTTAAANSI 61
           E+TPP K   K   GL +NS+GSKSA+AG KR G L   RKSY   EE+KGL+ AAAN+I
Sbjct: 134 ELTPPSKNVLKMNNGLLSNSRGSKSANAGEKRNGGLLMARKSYVSVEELKGLSLAAANAI 193

Query: 62  NGENRGRR-------GKTVLGVKTD 80
           NGENRG R       GKTVLG + D
Sbjct: 194 NGENRGNRGGRGIGTGKTVLGYRHD 218

[Close]
BLAST of Cp4.1LG03g06390 vs. NCBI nr
Match: gi|743820855|ref|XP_011021263.1| (PREDICTED: uncharacterized protein LOC105123387 [Populus euphratica])

HSP 1 Score: 79.3 bits (194), Expect = 3.7e-12
Identity = 49/83 (59.04%), Postives = 57/83 (68.67%), Query Frame = 1 

Query: 2   EMTPPGKTPGKNIAGLSANSKGSKSASAGGKRVGRLTDVRKSYAGFEEVKGLTTAAANSI 61
           E+TPP K   K   GL +NS+GSKSA+AG KR G L   RKSYA  EE+KGL+ AAAN+I
Sbjct: 157 ELTPPSKNVLKMNNGLLSNSRGSKSANAGEKRNGGLLMARKSYASVEELKGLSLAAANAI 216

Query: 62  NGENRGRR-------GKTVLGVK 78
           NGENRG R       GKTVLG +
Sbjct: 217 NGENRGNRGGRGIGTGKTVLGYR 239

[Close]
BLAST of Cp4.1LG03g06390 vs. NCBI nr
Match: gi|743875993|ref|XP_011035080.1| (PREDICTED: uncharacterized protein LOC105133005 [Populus euphratica])

HSP 1 Score: 75.1 bits (183), Expect = 7.0e-11
Identity = 45/86 (52.33%), Postives = 55/86 (63.95%), Query Frame = 1 

Query: 2   EMTPPGKTPGKNIAGLSANSKGSKSASAGGKRVGRLTDVRKSYAGFEEVKGLTTAAANSI 61
           E+TPP K   K   G  +NS+GSKSA+AG KR G L   RKSYA  EE+KGL+ AAAN+I
Sbjct: 132 ELTPPSKNVSKTNNGFLSNSRGSKSANAGEKRNGGLLMARKSYASVEELKGLSLAAANAI 191

Query: 62  NGENRGRR----------GKTVLGVK 78
           NG+NRG R          GK V+G +
Sbjct: 192 NGDNRGNRAGRGGVGIGIGKNVMGYR 217

The following BLAST results are available for this feature:
BLAST of Cp4.1LG03g06390 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG03g06390 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L9P8_CUCSA2.1e-2279.75Uncharacterized protein OS=Cucumis sativus GN=Csa_3G258110 PE=4 SV=1[more]
U5GIG0_POPTR2.6e-1257.65Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0005s15480g PE=4 SV=1[more]
B9RSM0_RICCO8.3e-1154.32Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1726900 PE=4 SV=1[more]
A0A067KA19_JATCU5.4e-1054.88Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12998 PE=4 SV=1[more]
M5XDN8_PRUPE4.6e-0954.65Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa014753mg PE=4 SV=1[more]
BLAST of Cp4.1LG03g06390 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG03g06390 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778680592|ref|XP_011651352.1|3.0e-2279.75PREDICTED: uncharacterized protein LOC101205045 [Cucumis sativus][more]
gi|659123205|ref|XP_008461547.1|4.2e-1676.56PREDICTED: uncharacterized protein LOC103500118 [Cucumis melo][more]
gi|566171569|ref|XP_006383435.1|3.7e-1257.65hypothetical protein POPTR_0005s15480g [Populus trichocarpa][more]
gi|743820855|ref|XP_011021263.1|3.7e-1259.04PREDICTED: uncharacterized protein LOC105123387 [Populus euphratica][more]
gi|743875993|ref|XP_011035080.1|7.0e-1152.33PREDICTED: uncharacterized protein LOC105133005 [Populus euphratica][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG03g06390.1Cp4.1LG03g06390.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR37708FAMILY NOT NAMEDcoord: 1..86
score: 3.2
NoneNo IPR availablePANTHERPTHR37708:SF1SUBFAMILY NOT NAMEDcoord: 1..86
score: 3.2

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG03g06390Wax gourdcpewgoB0773
Cp4.1LG03g06390Cucurbita pepo (Zucchini)cpecpeB449
Cp4.1LG03g06390Cucumber (Gy14) v1cgycpeB0009
Cp4.1LG03g06390Cucurbita maxima (Rimu)cmacpeB283
Cp4.1LG03g06390Cucurbita maxima (Rimu)cmacpeB494
Cp4.1LG03g06390Cucurbita moschata (Rifu)cmocpeB245
Cp4.1LG03g06390Cucurbita moschata (Rifu)cmocpeB453
Cp4.1LG03g06390Wild cucumber (PI 183967)cpecpiB602
Cp4.1LG03g06390Cucumber (Chinese Long) v2cpecuB600
Cp4.1LG03g06390Bottle gourd (USVL1VR-Ls)cpelsiB511
Cp4.1LG03g06390Watermelon (Charleston Gray)cpewcgB560
Cp4.1LG03g06390Watermelon (97103) v1cpewmB615
Cp4.1LG03g06390Melon (DHL92) v3.5.1cpemeB586
Cp4.1LG03g06390Cucumber (Gy14) v2cgybcpeB397
Cp4.1LG03g06390Melon (DHL92) v3.6.1cpemedB690
Cp4.1LG03g06390Melon (DHL92) v3.6.1cpemedB694
Cp4.1LG03g06390Silver-seed gourdcarcpeB0673
Cp4.1LG03g06390Silver-seed gourdcarcpeB1073
Cp4.1LG03g06390Cucumber (Chinese Long) v3cpecucB0749