Cp4.1LG03g05960 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG03g05960
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionUnknown protein
LocationCp4.1LG03 : 4487048 .. 4488824 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTGTCCCGAAGAGCCCCCACCACAGTTAATGACAAACGTCTTTACCGCTAAACACTCCTTGCATTTCTGCAACTCCTCGTTCCTCACTCCAAACCATTATTTAACCTTCTTCTTCTTCGATTTTCCCATCGATCCATTTCGTAATCAGTCAATTCTGATCCCCAATCGGTTTTTTAGAACCCTAAATTTTGAATTCGGTGGGAATTGCTCTGTTCCACGTTTCGCTGATCCAGTGTTTGATACTTAATTTCAAGTTCTTGCATCTTTTTTTGGGTCGATGGCTCTTCATTCTGGCGCATTCTGTTTCCATGGGTTTCCTACTGTTGCGCATGAATCTTTGAGACACAGGCAATGGGTGGTGAAATCTTCTGGGTTTTTGCGGTCGCGTGTAGTTTCTAAGTCCCATTTGAAAGTCAAAGGTAAACTCCATTCTAATGGATTGTTGGATTTGATCTGTTTTGGCTTTTGTTTTGTTGTCATTTTCTTTAGTTGTGATTTCAAGCTAAGATTGGGTGTTCTGTTAATCTGTGAAGTGAATTTATTAGAATTTAGTGTAGAATATCATTGAGAGCTCATACCATTGTGGAGGTTAGTTATTCCTAACATGGTATCATAGTCATGCCCTTAATTTAGCTATGTCAATACAATTGTTGAGAATTTTTGAGAGGAAGTCCATATTGGCTAATTTAGGGAATGATCATGGGTTTATAAGTAAGGCATACATCTCCATTGGTTTTTTGGGAAGCCCAAAGCAAATCCATAAGAGCTTATACTTAAAGTGGACAATATCATACTATTGTGGAGAGTCGTGATTCCTAACATTTACCAAGTGAAACTTGCTTGGAGAAGCCTTATAATTAGTTTGTGGAGTGTGAAATAAATTGTAAATGCTGGGAATTAAATTTGGAAAGTCAATTCTTATTGATGTCAAATAATAAGTCGATGAGACCTGCTAATATTTGTGAGATCCCACGTTGGTTAGAGAGGGGAATGAAGCACTTTTTATTAGAGTGTGGAAACTTCTCCATAGTCGACATGTTTTAAAACCGTGAGGTTGATGGCGATATGTAATGGGCCAAAGTGGACAATATCTACCAGCGGTGAGTTTGGGCTGTTACAAATAGTATCAGAGCCAGACACCGAGTAGTGTGTCAGTGAGGAGATTGGGCTCCTAAGGGGGTGGATTGTGAGATCCCACATCGGTTGGAGAGGGAAACGAAACATTTCTTATAAGAGTGTGGAAACTAATCCCTAGCAGACACGTTTTAAAACCGTGAGGCTAATGGTGATACGTAATGGGCCAAAATACAATATCTGCTAGTAGTGGGTTTGGGTTGTTACAAATGGTATCAGAGCTAGACATCGAGCGGCGTGTCAGCGAGGACATTGAGCTCCCAAGGGAGGTGGATTGTGAGATCCCACATGGNGAAAAACAGAGTTATCTTTTCAACACACAGACAGGCACCACGCGAACTCACAGAAGGAATGCAATTGCTTCTCTCTATAACAGAAACAAAAAAACAGCTAGAAAACTTCATGCACCAAATGAAGAGGAAATCCATCATCTAACAGCAGCATTAGCTCAAATAAAAGCACTAAACCGTAACAATCAAAACGCCTAAAAAACAATGATAGACAACAATACCATAGACTTACGAGTCAGATCAGAGGGTTTCGGAGACGAAACCGGAGCTGAAGCCGTACTCGGAATCAGAATTGCGTCCGGTAAAACAGATGGAGGACGAGTATCCGATTCAAGCTGAGGAGTATTAG

mRNA sequence

ATGGCTTCAATTCTGATCCCCAATCGGTTTTTTAGAACCCTAAATTTTGAATTCGGTGGGAATTGCTCTGTTCCACTTCTTGCATCTTTTTTTGGGTCGATGGCTCTTCATTCTGGCGCATTCTGTTTCCATGGGTTTCCTACTGTTGCGCATGAATCTTTGAGACACAGGCAATGGGTGGTGAAATCTTCTGGGTTTTTGCGGTCGCGTGTAGTTTCTAAGTCCCATTTGAAAGTCAAAGGTAAACTCCATTCTAATGGATTGTTGGATTTGATCTGTTTTGGCTTTTGTTTTGTTACTTACGAGTCAGATCAGAGGGTTTCGGAGACGAAACCGGAGCTGAAGCCGTACTCGGAATCAGAATTGCGTCCGGTAAAACAGATGGAGGACGAGTATCCGATTCAAGCTGAGGAGTATTAG

Coding sequence (CDS)

ATGGCTTCAATTCTGATCCCCAATCGGTTTTTTAGAACCCTAAATTTTGAATTCGGTGGGAATTGCTCTGTTCCACTTCTTGCATCTTTTTTTGGGTCGATGGCTCTTCATTCTGGCGCATTCTGTTTCCATGGGTTTCCTACTGTTGCGCATGAATCTTTGAGACACAGGCAATGGGTGGTGAAATCTTCTGGGTTTTTGCGGTCGCGTGTAGTTTCTAAGTCCCATTTGAAAGTCAAAGGTAAACTCCATTCTAATGGATTGTTGGATTTGATCTGTTTTGGCTTTTGTTTTGTTACTTACGAGTCAGATCAGAGGGTTTCGGAGACGAAACCGGAGCTGAAGCCGTACTCGGAATCAGAATTGCGTCCGGTAAAACAGATGGAGGACGAGTATCCGATTCAAGCTGAGGAGTATTAG

Protein sequence

MASILIPNRFFRTLNFEFGGNCSVPLLASFFGSMALHSGAFCFHGFPTVAHESLRHRQWVVKSSGFLRSRVVSKSHLKVKGKLHSNGLLDLICFGFCFVTYESDQRVSETKPELKPYSESELRPVKQMEDEYPIQAEEY
Homology
[Close]
BLAST of Cp4.1LG03g05960 vs. TrEMBL
Match: A0A0A0L7Q6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G345390 PE=3 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 6.2e-13
Identity = 42/76 (55.26%), Postives = 50/76 (65.79%), Query Frame = 1 

Query: 34  MALHSGAFCFHGFPTVAHESLRHRQWVVKSSGFLRSRVVSKSHLKVK--------GKLHS 93
           MAL+SGAFCFHG PTV  ESLRH+QW V+S G  RSRVVSKS LKVK        G + S
Sbjct: 1   MALYSGAFCFHGVPTVTLESLRHKQWAVRSYGISRSRVVSKSQLKVKVKAFSGDGGSVES 60

Query: 94  NGLLDLICFGFCFVTY 102
           N    ++CFG   + +
Sbjct: 61  NDSSLVVCFGEMLIDF 76

[Close]
BLAST of Cp4.1LG03g05960 vs. NCBI nr
Match: gi|778680851|ref|XP_011651407.1| (PREDICTED: probable fructokinase-6, chloroplastic [Cucumis sativus])

HSP 1 Score: 82.0 bits (201), Expect = 8.8e-13
Identity = 42/76 (55.26%), Postives = 50/76 (65.79%), Query Frame = 1 

Query: 34  MALHSGAFCFHGFPTVAHESLRHRQWVVKSSGFLRSRVVSKSHLKVK--------GKLHS 93
           MAL+SGAFCFHG PTV  ESLRH+QW V+S G  RSRVVSKS LKVK        G + S
Sbjct: 1   MALYSGAFCFHGVPTVTLESLRHKQWAVRSYGISRSRVVSKSQLKVKVKAFSGDGGSVES 60

Query: 94  NGLLDLICFGFCFVTY 102
           N    ++CFG   + +
Sbjct: 61  NDSSLVVCFGEMLIDF 76

[Close]
BLAST of Cp4.1LG03g05960 vs. NCBI nr
Match: gi|659114466|ref|XP_008457065.1| (PREDICTED: probable fructokinase-4 [Cucumis melo])

HSP 1 Score: 82.0 bits (201), Expect = 8.8e-13
Identity = 42/76 (55.26%), Postives = 50/76 (65.79%), Query Frame = 1 

Query: 34  MALHSGAFCFHGFPTVAHESLRHRQWVVKSSGFLRSRVVSKSHLKVK--------GKLHS 93
           MAL+SGAFCFHG PTV  ESLRH++W VKS G  RSRVVSKS LKVK        G + S
Sbjct: 1   MALYSGAFCFHGVPTVTLESLRHKEWAVKSYGLSRSRVVSKSQLKVKVKAFSGDGGSVES 60

Query: 94  NGLLDLICFGFCFVTY 102
           N    ++CFG   + +
Sbjct: 61  NDSSLVVCFGEMLIDF 76

The following BLAST results are available for this feature:
BLAST of Cp4.1LG03g05960 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG03g05960 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L7Q6_CUCSA6.2e-1355.26Uncharacterized protein OS=Cucumis sativus GN=Csa_3G345390 PE=3 SV=1[more]
BLAST of Cp4.1LG03g05960 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG03g05960 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778680851|ref|XP_011651407.1|8.8e-1355.26PREDICTED: probable fructokinase-6, chloroplastic [Cucumis sativus][more]
gi|659114466|ref|XP_008457065.1|8.8e-1355.26PREDICTED: probable fructokinase-4 [Cucumis melo][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008152 metabolic process
cellular_component GO:0005575 cellular_component
molecular_function GO:0016772 transferase activity, transferring phosphorus-containing groups
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG03g05960.1Cp4.1LG03g05960.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG03g05960Cucumber (Gy14) v2cgybcpeB397
Cp4.1LG03g05960Melon (DHL92) v3.6.1cpemedB694
Cp4.1LG03g05960Silver-seed gourdcarcpeB0257
Cp4.1LG03g05960Silver-seed gourdcarcpeB1073
Cp4.1LG03g05960Cucumber (Chinese Long) v3cpecucB0749
Cp4.1LG03g05960Wax gourdcpewgoB0786
Cp4.1LG03g05960Cucurbita pepo (Zucchini)cpecpeB449
Cp4.1LG03g05960Cucumber (Gy14) v1cgycpeB0532
Cp4.1LG03g05960Cucurbita maxima (Rimu)cmacpeB283
Cp4.1LG03g05960Cucurbita maxima (Rimu)cmacpeB494
Cp4.1LG03g05960Cucurbita moschata (Rifu)cmocpeB245
Cp4.1LG03g05960Cucurbita moschata (Rifu)cmocpeB453
Cp4.1LG03g05960Wild cucumber (PI 183967)cpecpiB602
Cp4.1LG03g05960Cucumber (Chinese Long) v2cpecuB600
Cp4.1LG03g05960Bottle gourd (USVL1VR-Ls)cpelsiB511
Cp4.1LG03g05960Watermelon (Charleston Gray)cpewcgB560
Cp4.1LG03g05960Watermelon (97103) v1cpewmB614
Cp4.1LG03g05960Melon (DHL92) v3.5.1cpemeB586