Cp4.1LG03g04870 (gene) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG03g04870
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	Peptidoglycan-binding LysM domain-containing protein
Location	Cp4.1LG03 : 5244109 .. 5246223 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TCGAAGTCTTCGAACTGTCGGATATTTTTTTGGGGGGGTTCTCTGAAGAAACGAGTAACGGAGAGAAAAAGAAAAAGAAGAAGAAGAAGAAGAAGAAGAAGAGCCAAAATCTTTCGTTATTTTTCCGCGAAAATTTGGATTCTCAGTTTTTTTTTGTTTTACCTCGAAAGGCGAACAAGTTTCTTCTTTGATTTCATTTGTTTTGTTTTCCTTTTGTCTTTTCCAATTCAGGTCTAGGGTTCTTTTTTCTGTTTCTGTTCGTCTTGATTGTTGCAGTTTGTTTTTCGGGAGGATTCTTTTTTTTGGTGTTGGTTGCTGTTTGGGGTTGATTTGGATCGATTTTCAATTTTGGTTGATCCTGCGATGGATTTACTTTCTTGACGGAAATTTATTTTGATGGTGGATTTGAGAGGCGCAGATGGAAAGGGGGCGGATGAACGGGAACGGAAACGGAAACGGGGATTTCGACTATAGTTATGAGAGCAATGGCTATCATGCGTTAGATCTCGTGGATGTCTACGGAGAGAACACGCCTATTGGAAGATGCTCCGGGAAGACGTCGCAGGTTGCATCTTCTTCGAATTGTATCGTGCATCCGGTTTCTAAATTCGACACTCTTGCTGGAGTTGCAATCAAATATGGTGTCGAGGTAAACCACATTTCATAATCTCTGATGAGTTTATAACAGAAAATGGATTTCTGAATTTGCAGTAGTTTGAAATGTCCTTGACTTCTTTCAATCGTCGTTATGATGTGGAAGCAATAGAAATGATGATTTCAAAATTGTGTTTGCTTGGTATTATGATGTTGGGTGTCAGATGTTGCTTTTTATTTTTTTTAATAATTATTATTTTAAATCTATCTTTCTCACCGTCAGGTTAGAATTACTCTGTTTCCTCTTTGTCCTGGGATGAGTTCTTTAAAAACCATAGCGATGACAACTCATTCGTCCCTTGAATTTTCTGCTATGACCAAATGAGGCTTATGACGGATTTGTATTGAAAATGGAATGAATCAGAACTTATTAGTGTTTTCACCATGAGATAACCATTTGATTATTATGGGCTACATGTAGATGTTGATCAGCTCTTGTTTCCTGTTCTCCCGCTCAATACGACCTTTTCGAAGTGAGTTAAAAGGGGCGAAGCAGGAGTATCTTTTGTTGTGGGGAAAACATAGATGAAAATAAAAATTAACAAAAATTGAAAAACTGGTTTAAAATCAAACAGTTATTTTATAGGAAAATTGTAAAATTTAATGCAAAAATTAGAAATCAAAGGGTCAAAATTGTTATGTCCCAGATGTTTGAATAGAGTTTTTGAGAACTCTAGATTTAAAGAAAACTAATATGGGTTGCTCTCGAAACCTGGCTCCATGATTAGTTGGAGTTTGATATTCGGCAATTCTGATGAATATCGGCTTCCTTCTTCGGGCAGTGTGTAATCATATGATATAGAAAATTTCCCTCGAGAGCATAGACAATTCCATTCACATGTGGTCGATATTATTTGTTATTTGGTTCTTTCAATTAAAAGGTCAAAGCTCAGTTTCTTACACCCCTAAGGAAGGAAAAAAAAGAATCAAAATTAATAGATATCTTTTAGGAGGAAATTCTAATTGTTTTTCATCGTGATTCACCAGGTTGCAGATATAAAGAAGATGAACGGGCTAGTCACAGACTTTCAAATGTTTGCTCTTAAATCACTCCAGATTCCTCTTCCTGGAAGGCATCCTCCATCTCCTTGCCTATTGGAAGGCCTAAACACTTCAGGGTATGTGTTTGTTTTTTGATGTTCATCATATTGTTTCCATATAATATTGCACAAGAATAATATTGCACAAGAATGTGTTTGAGCTTTCAACAATGTGTTTTGAGTTTGATTGTAAGTCAGTAAATTGCAGAATTGTCAGTTACTGGTCATATTGGGGTTGAGATTAAGGTTGGGGTTCAATTAGTATTTCTATCTGTTAAACTATGATAGGAATGGCCTAAGCGAAGCCATTAAGAAAGTAAATGATAGCGTGGAGCCAGGGCTATTCGTTTTGCTTGGAGCCTTAGGTCTTTAATGGTTCGTCTTTATGATAGCGTGTAGCCCTGATTGTGATTGTGGATGC

mRNA sequence

TCGAAGTCTTCGAACTGTCGGATATTTTTTTGGGGGGGTTCTCTGAAGAAACGAGTAACGGAGAGAAAAAGAAAAAGAAGAAGAAGAAGAAGAAGAAGAAGAGCCAAAATCTTTCGTTATTTTTCCGCGAAAATTTGGATTCTCAGTTTTTTTTTGTTTTACCTCGAAAGGCGAACAAGTTTCTTCTTTGATTTCATTTGTTTTGTTTTCCTTTTGTCTTTTCCAATTCAGGTCTAGGGTTCTTTTTTCTGTTTCTGTTCGTCTTGATTGTTGCAGTTTGTTTTTCGGGAGGATTCTTTTTTTTGGTGTTGGTTGCTGTTTGGGGTTGATTTGGATCGATTTTCAATTTTGGTTGATCCTGCGATGGATTTACTTTCTTGACGGAAATTTATTTTGATGGTGGATTTGAGAGGCGCAGATGGAAAGGGGGCGGATGAACGGGAACGGAAACGGAAACGGGGATTTCGACTATAGTTATGAGAGCAATGGCTATCATGCGTTAGATCTCGTGGATGTCTACGGAGAGAACACGCCTATTGGAAGATGCTCCGGGAAGACGTCGCAGGTTGCATCTTCTTCGAATTGTATCGTGCATCCGGTTTCTAAATTCGACACTCTTGCTGGAGTTGCAATCAAATATGGTGTCGAGGTTGCAGATATAAAGAAGATGAACGGGCTAGTCACAGACTTTCAAATGTTTGCTCTTAAATCACTCCAGATTCCTCTTCCTGGAAGGCATCCTCCATCTCCTTGCCTATTGGAAGGCCTAAACACTTCAGGGTATGTGTTTGTTTTTTGATGTTCATCATATTGTTTCCATATAATATTGCACAAGAATAATATTGCACAAGAATGTGTTTGAGCTTTCAACAATGTGTTTTGAGTTTGATTGTAAGTCAGTAAATTGCAGAATTGTCAGTTACTGGTCATATTGGGGTTGAGATTAAGGTTGGGGTTCAATTAGTATTTCTATCTGTTAAACTATGATAGGAATGGCCTAAGCGAAGCCATTAAGAAAGTAAATGATAGCGTGGAGCCAGGGCTATTCGTTTTGCTTGGAGCCTTAGGTCTTTAATGGTTCGTCTTTATGATAGCGTGTAGCCCTGATTGTGATTGTGGATGC

Coding sequence (CDS)

ATGGAAAGGGGGCGGATGAACGGGAACGGAAACGGAAACGGGGATTTCGACTATAGTTATGAGAGCAATGGCTATCATGCGTTAGATCTCGTGGATGTCTACGGAGAGAACACGCCTATTGGAAGATGCTCCGGGAAGACGTCGCAGGTTGCATCTTCTTCGAATTGTATCGTGCATCCGGTTTCTAAATTCGACACTCTTGCTGGAGTTGCAATCAAATATGGTGTCGAGGTTGCAGATATAAAGAAGATGAACGGGCTAGTCACAGACTTTCAAATGTTTGCTCTTAAATCACTCCAGATTCCTCTTCCTGGAAGGCATCCTCCATCTCCTTGCCTATTGGAAGGCCTAAACACTTCAGGGTATGTGTTTGTTTTTTGA

Protein sequence

MERGRMNGNGNGNGDFDYSYESNGYHALDLVDVYGENTPIGRCSGKTSQVASSSNCIVHPVSKFDTLAGVAIKYGVEVADIKKMNGLVTDFQMFALKSLQIPLPGRHPPSPCLLEGLNTSGYVFVF

Homology

[Close]

BLAST of Cp4.1LG03g04870 vs. TrEMBL
Match: A0A0A0LCX1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G653440 PE=4 SV=1)

HSP 1 Score: 219.2 bits (557), Expect = 2.9e-54
Identity = 109/121 (90.08%), Postives = 112/121 (92.56%), Query Frame = 1


Query: 1   MERGRMNGNGNGNGDFDYSYESNGYHALDLVDVYGENTPIGRCSGKTSQVASSSNCIVHP 60
           MERGRMNGNGN     DYS ESNGYH+LDL DVYGENTP GR SGKTSQV+SSSNCIVHP
Sbjct: 1   MERGRMNGNGN----CDYSCESNGYHSLDLADVYGENTPDGRSSGKTSQVSSSSNCIVHP 60

Query: 61  VSKFDTLAGVAIKYGVEVADIKKMNGLVTDFQMFALKSLQIPLPGRHPPSPCLLEGLNTS 120
           VSKFDTLAGVAIKYGVEVADIKKMNGLVTDFQMFALKSLQIPLPGRHPPSPCLLEGLNT+
Sbjct: 61  VSKFDTLAGVAIKYGVEVADIKKMNGLVTDFQMFALKSLQIPLPGRHPPSPCLLEGLNTA 117

Query: 121 G 122
           G
Sbjct: 121 G 117

[Close]

BLAST of Cp4.1LG03g04870 vs. TrEMBL
Match: A0A0D2NGQ2_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_002G015700 PE=4 SV=1)

HSP 1 Score: 123.6 bits (309), Expect = 1.7e-25
Identity = 69/123 (56.10%), Postives = 84/123 (68.29%), Query Frame = 1


Query: 1   MERGRMNGNGNGNGDFDYSYESNGYHALDLVDVYGENTPIGRCSGKTSQVAS--SSNCIV 60
           MER R N   NG    DYSY +NG ++    ++  + + + +   ++S   S   +  I 
Sbjct: 1   MERERCNSIANG----DYSYSANGIYS----EICNDYSILEKERDQSSPDPSLRGNGYIE 60

Query: 61  HPVSKFDTLAGVAIKYGVEVADIKKMNGLVTDFQMFALKSLQIPLPGRHPPSPCLLEGLN 120
           HPVS+FDT+AGVAIKYGVEVADIKKMNGLVTDFQMFALKS+QIPLPGRHPPSPC   G  
Sbjct: 61  HPVSRFDTMAGVAIKYGVEVADIKKMNGLVTDFQMFALKSIQIPLPGRHPPSPCSSNGCE 115

Query: 121 TSG 122
             G
Sbjct: 121 AIG 115

[Close]

BLAST of Cp4.1LG03g04870 vs. TrEMBL
Match: A0A061E2F1_THECC (Peptidoglycan-binding LysM domain-containing protein, putative isoform 3 OS=Theobroma cacao GN=TCM_007736 PE=4 SV=1)

HSP 1 Score: 122.9 bits (307), Expect = 2.9e-25
Identity = 73/124 (58.87%), Postives = 81/124 (65.32%), Query Frame = 1


Query: 1   MERGRMNGNGNGNGDFDYSYESNGYHALDLVDVYGENTPIGRCSGKTSQVASS---SNCI 60
           MER R N   NG    DYSY +N  ++      +  +  +       S  ASS   +  I
Sbjct: 3   MERERRNSIANG----DYSYNTNANYSN-----FCNDYSVLEKEKNHSLPASSLHGAGFI 62

Query: 61  VHPVSKFDTLAGVAIKYGVEVADIKKMNGLVTDFQMFALKSLQIPLPGRHPPSPCLLEGL 120
            HPVS+FDTLAGVAIKYGVEVADIKKMNGLVTD QMFALKSLQIPLPGRHPPSPCL  G 
Sbjct: 63  EHPVSRFDTLAGVAIKYGVEVADIKKMNGLVTDLQMFALKSLQIPLPGRHPPSPCLSNGS 117

Query: 121 NTSG 122
            T G
Sbjct: 123 ETPG 117

[Close]

BLAST of Cp4.1LG03g04870 vs. TrEMBL
Match: A0A061EA25_THECC (Peptidoglycan-binding LysM domain-containing protein, putative isoform 1 OS=Theobroma cacao GN=TCM_007736 PE=4 SV=1)

HSP 1 Score: 122.9 bits (307), Expect = 2.9e-25
Identity = 73/124 (58.87%), Postives = 81/124 (65.32%), Query Frame = 1


Query: 1   MERGRMNGNGNGNGDFDYSYESNGYHALDLVDVYGENTPIGRCSGKTSQVASS---SNCI 60
           MER R N   NG    DYSY +N  ++      +  +  +       S  ASS   +  I
Sbjct: 3   MERERRNSIANG----DYSYNTNANYSN-----FCNDYSVLEKEKNHSLPASSLHGAGFI 62

Query: 61  VHPVSKFDTLAGVAIKYGVEVADIKKMNGLVTDFQMFALKSLQIPLPGRHPPSPCLLEGL 120
            HPVS+FDTLAGVAIKYGVEVADIKKMNGLVTD QMFALKSLQIPLPGRHPPSPCL  G 
Sbjct: 63  EHPVSRFDTLAGVAIKYGVEVADIKKMNGLVTDLQMFALKSLQIPLPGRHPPSPCLSNGS 117

Query: 121 NTSG 122
            T G
Sbjct: 123 ETPG 117

[Close]

BLAST of Cp4.1LG03g04870 vs. TrEMBL
Match: A0A0D2TWM4_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_013G070300 PE=4 SV=1)

HSP 1 Score: 121.7 bits (304), Expect = 6.4e-25
Identity = 69/121 (57.02%), Postives = 79/121 (65.29%), Query Frame = 1


Query: 1   MERGRMNGNGNGNGDFDYSYESNGYHALDLVDVYGENTPIGRCSGKTSQVASSSNCIVHP 60
           MER R NG    N    YSY++NG+++    D         +     S    S+  I HP
Sbjct: 3   MERERRNGI---NTIEQYSYDTNGHYSHFCNDY--SLLEKDKIQNLPSSTIPSAGFIEHP 62

Query: 61  VSKFDTLAGVAIKYGVEVADIKKMNGLVTDFQMFALKSLQIPLPGRHPPSPCLLEGLNTS 120
           VS+FDTLAGVAIKYGVEVADIK+MNGLVTD QMFALK+LQIPLPGRHPPSPCL     T 
Sbjct: 63  VSRFDTLAGVAIKYGVEVADIKRMNGLVTDLQMFALKTLQIPLPGRHPPSPCLSNDSTTP 118

Query: 121 G 122
           G
Sbjct: 123 G 118

[Close]

BLAST of Cp4.1LG03g04870 vs. TAIR10
Match: AT5G23130.1 (AT5G23130.1 Peptidoglycan-binding LysM domain-containing protein)

HSP 1 Score: 115.2 bits (287), Expect = 3.0e-26
Identity = 68/127 (53.54%), Postives = 82/127 (64.57%), Query Frame = 1


Query: 2   ERGRMNGNGNGNGDFDYSYESNGYHALDLVDVYGENTPIGRCSGK---------TSQVAS 61
           ERGR     NG+ +F  + +  GY  +D    + E +P   CS           +S  +S
Sbjct: 4   ERGRRISGFNGSFEFS-NRKFRGYGFVDRSQGFHERSPSRSCSVSKILRITPPTSSPPSS 63

Query: 62  SSNC---IVHPVSKFDTLAGVAIKYGVEVADIKKMNGLVTDFQMFALKSLQIPLPGRHPP 117
           +S C   I H VSKFDTLAG+AIKYGVEVADI K+NGLVTD QMFAL+SL+IPLPGRHPP
Sbjct: 64  ASTCAGYIEHRVSKFDTLAGIAIKYGVEVADITKLNGLVTDLQMFALESLRIPLPGRHPP 123

[Close]

BLAST of Cp4.1LG03g04870 vs. TAIR10
Match: AT5G08200.1 (AT5G08200.1 peptidoglycan-binding LysM domain-containing protein)

HSP 1 Score: 113.2 bits (282), Expect = 1.1e-25
Identity = 69/135 (51.11%), Postives = 81/135 (60.00%), Query Frame = 1


Query: 1   MERGRMNGNGNGNGDFDYSY--ESNGYHALDLVDVYGENTP----IGRCSGKTSQVASSS 60
           M+R R +   NG  ++      + NG+  LD ++   E +P    I R    TS    SS
Sbjct: 3   MDRERRSSGRNGTPEYSNGKFRDDNGFGFLDRLENCREKSPPRSKILRIPSPTSSPPPSS 62

Query: 61  NC-------------IVHPVSKFDTLAGVAIKYGVEVADIKKMNGLVTDFQMFALKSLQI 117
           +              I H +SKFDTLAGVAIKYGVEVAD+KKMN LVTD QMFALKSLQI
Sbjct: 63  SSPPFHGSNSPDRGYIEHRISKFDTLAGVAIKYGVEVADVKKMNNLVTDLQMFALKSLQI 122

[Close]

BLAST of Cp4.1LG03g04870 vs. NCBI nr
Match: gi|449461683|ref|XP_004148571.1| (PREDICTED: uncharacterized protein LOC101221951 [Cucumis sativus])

HSP 1 Score: 219.2 bits (557), Expect = 4.2e-54
Identity = 109/121 (90.08%), Postives = 112/121 (92.56%), Query Frame = 1


Query: 1   MERGRMNGNGNGNGDFDYSYESNGYHALDLVDVYGENTPIGRCSGKTSQVASSSNCIVHP 60
           MERGRMNGNGN     DYS ESNGYH+LDL DVYGENTP GR SGKTSQV+SSSNCIVHP
Sbjct: 1   MERGRMNGNGN----CDYSCESNGYHSLDLADVYGENTPDGRSSGKTSQVSSSSNCIVHP 60

Query: 61  VSKFDTLAGVAIKYGVEVADIKKMNGLVTDFQMFALKSLQIPLPGRHPPSPCLLEGLNTS 120
           VSKFDTLAGVAIKYGVEVADIKKMNGLVTDFQMFALKSLQIPLPGRHPPSPCLLEGLNT+
Sbjct: 61  VSKFDTLAGVAIKYGVEVADIKKMNGLVTDFQMFALKSLQIPLPGRHPPSPCLLEGLNTA 117

Query: 121 G 122
           G
Sbjct: 121 G 117

[Close]

BLAST of Cp4.1LG03g04870 vs. NCBI nr
Match: gi|659123802|ref|XP_008461847.1| (PREDICTED: uncharacterized protein LOC103500354 [Cucumis melo])

HSP 1 Score: 215.3 bits (547), Expect = 6.1e-53
Identity = 110/122 (90.16%), Postives = 112/122 (91.80%), Query Frame = 1


Query: 1   MERGRMNGNGNGNGDFDYSYESNGYHALDLVDVYGENTPIGRCSGKTSQVASSS-NCIVH 60
           MERGRMNGNGN     DYS ESNGYH+LDLVDVYGENTP GR SGKTSQV+SSS NCIVH
Sbjct: 1   MERGRMNGNGN----CDYSCESNGYHSLDLVDVYGENTPDGRSSGKTSQVSSSSSNCIVH 60

Query: 61  PVSKFDTLAGVAIKYGVEVADIKKMNGLVTDFQMFALKSLQIPLPGRHPPSPCLLEGLNT 120
           PVSKFDTLAGVAIKYGVEVADIKKMNGLVTDFQMFALKSLQIPLPGRHPPSPCLLEGLNT
Sbjct: 61  PVSKFDTLAGVAIKYGVEVADIKKMNGLVTDFQMFALKSLQIPLPGRHPPSPCLLEGLNT 118

Query: 121 SG 122
            G
Sbjct: 121 PG 118

[Close]

BLAST of Cp4.1LG03g04870 vs. NCBI nr
Match: gi|729301686|ref|XP_010522189.1| (PREDICTED: uncharacterized protein LOC104800897 [Tarenaya hassleriana])

HSP 1 Score: 124.0 bits (310), Expect = 1.8e-25
Identity = 71/137 (51.82%), Postives = 81/137 (59.12%), Query Frame = 1


Query: 13  NGDFDYSY----ESNGYHALDLVDVYGENTPIGRCSGKTSQVASSSNC------------ 72
           NG  DYSY    + NGY   D  D Y E +P G  + K S + S S+             
Sbjct: 20  NGIHDYSYGKFRDENGYGIADRSDGYREWSPSGSSASKMSWILSPSSSPPPSTSSPPLPS 79

Query: 73  ------------IVHPVSKFDTLAGVAIKYGVEVADIKKMNGLVTDFQMFALKSLQIPLP 122
                       I H VSKFDTL+G+AIKYGVEVADIKKMNGLVTD QMFALK+L+IPLP
Sbjct: 80  SSSSSSSPGAGYIEHRVSKFDTLSGIAIKYGVEVADIKKMNGLVTDLQMFALKTLRIPLP 139

[Close]

BLAST of Cp4.1LG03g04870 vs. NCBI nr
Match: gi|823130022|ref|XP_012451520.1| (PREDICTED: uncharacterized protein LOC105773882 [Gossypium raimondii])

HSP 1 Score: 123.6 bits (309), Expect = 2.4e-25
Identity = 69/123 (56.10%), Postives = 84/123 (68.29%), Query Frame = 1


Query: 1   MERGRMNGNGNGNGDFDYSYESNGYHALDLVDVYGENTPIGRCSGKTSQVAS--SSNCIV 60
           MER R N   NG    DYSY +NG ++    ++  + + + +   ++S   S   +  I 
Sbjct: 1   MERERCNSIANG----DYSYSANGIYS----EICNDYSILEKERDQSSPDPSLRGNGYIE 60

Query: 61  HPVSKFDTLAGVAIKYGVEVADIKKMNGLVTDFQMFALKSLQIPLPGRHPPSPCLLEGLN 120
           HPVS+FDT+AGVAIKYGVEVADIKKMNGLVTDFQMFALKS+QIPLPGRHPPSPC   G  
Sbjct: 61  HPVSRFDTMAGVAIKYGVEVADIKKMNGLVTDFQMFALKSIQIPLPGRHPPSPCSSNGCE 115

Query: 121 TSG 122
             G
Sbjct: 121 AIG 115

[Close]

BLAST of Cp4.1LG03g04870 vs. NCBI nr
Match: gi|590689694|ref|XP_007043299.1| (Peptidoglycan-binding LysM domain-containing protein, putative isoform 3 [Theobroma cacao])

HSP 1 Score: 122.9 bits (307), Expect = 4.1e-25
Identity = 73/124 (58.87%), Postives = 81/124 (65.32%), Query Frame = 1


Query: 1   MERGRMNGNGNGNGDFDYSYESNGYHALDLVDVYGENTPIGRCSGKTSQVASS---SNCI 60
           MER R N   NG    DYSY +N  ++      +  +  +       S  ASS   +  I
Sbjct: 3   MERERRNSIANG----DYSYNTNANYSN-----FCNDYSVLEKEKNHSLPASSLHGAGFI 62

Query: 61  VHPVSKFDTLAGVAIKYGVEVADIKKMNGLVTDFQMFALKSLQIPLPGRHPPSPCLLEGL 120
            HPVS+FDTLAGVAIKYGVEVADIKKMNGLVTD QMFALKSLQIPLPGRHPPSPCL  G 
Sbjct: 63  EHPVSRFDTLAGVAIKYGVEVADIKKMNGLVTDLQMFALKSLQIPLPGRHPPSPCLSNGS 117

Query: 121 NTSG 122
            T G
Sbjct: 123 ETPG 117

The following BLAST results are available for this feature:

BLAST of Cp4.1LG03g04870 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG03g04870 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LCX1_CUCSA	2.9e-54	90.08	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G653440 PE=4 SV=1	[more]
A0A0D2NGQ2_GOSRA	1.7e-25	56.10	Uncharacterized protein OS=Gossypium raimondii GN=B456_002G015700 PE=4 SV=1	[more]
A0A061E2F1_THECC	2.9e-25	58.87	Peptidoglycan-binding LysM domain-containing protein, putative isoform 3 OS=Theo...	[more]
A0A061EA25_THECC	2.9e-25	58.87	Peptidoglycan-binding LysM domain-containing protein, putative isoform 1 OS=Theo...	[more]
A0A0D2TWM4_GOSRA	6.4e-25	57.02	Uncharacterized protein OS=Gossypium raimondii GN=B456_013G070300 PE=4 SV=1	[more]

BLAST of Cp4.1LG03g04870 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G23130.1	3.0e-26	53.54	Peptidoglycan-binding LysM domain-containing protein	[more]
AT5G08200.1	1.1e-25	51.11	peptidoglycan-binding LysM domain-containing protein	[more]

BLAST of Cp4.1LG03g04870 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449461683\|ref\|XP_004148571.1\|	4.2e-54	90.08	PREDICTED: uncharacterized protein LOC101221951 [Cucumis sativus]	[more]
gi\|659123802\|ref\|XP_008461847.1\|	6.1e-53	90.16	PREDICTED: uncharacterized protein LOC103500354 [Cucumis melo]	[more]
gi\|729301686\|ref\|XP_010522189.1\|	1.8e-25	51.82	PREDICTED: uncharacterized protein LOC104800897 [Tarenaya hassleriana]	[more]
gi\|823130022\|ref\|XP_012451520.1\|	2.4e-25	56.10	PREDICTED: uncharacterized protein LOC105773882 [Gossypium raimondii]	[more]
gi\|590689694\|ref\|XP_007043299.1\|	4.1e-25	58.87	Peptidoglycan-binding LysM domain-containing protein, putative isoform 3 [Theobr...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR018392	LysM_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG03g04870.1	Cp4.1LG03g04870.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR018392	LysM domain	GENE3D	G3DSA:3.10.350.10		coord: 56..101 score: 3.
IPR018392	LysM domain	SMART	SM00257	LysM_2	coord: 58..102 score: 0.
IPR018392	LysM domain	unknown	SSF54106	LysM domain	coord: 57..102 score: 1.4
None	No IPR available	PANTHER	PTHR20932	LOC443603 PROTEIN-RELATED	coord: 48..116 score: 7.8
None	No IPR available	PANTHER	PTHR20932:SF8	PEPTIDOGLYCAN-BINDING LYSM DOMAIN-CONTAINING PROTEIN	coord: 48..116 score: 7.8

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cp4.1LG03g04870	Cucsa.128300	Cucumber (Gy14) v1	cgycpeB0337
Cp4.1LG03g04870	Cucsa.192300	Cucumber (Gy14) v1	cgycpeB0540
Cp4.1LG03g04870	CmaCh01G002530	Cucurbita maxima (Rimu)	cmacpeB494
Cp4.1LG03g04870	CmaCh14G009700	Cucurbita maxima (Rimu)	cmacpeB283
Cp4.1LG03g04870	CmaCh17G009890	Cucurbita maxima (Rimu)	cmacpeB404
Cp4.1LG03g04870	CmoCh01G002640	Cucurbita moschata (Rifu)	cmocpeB453
Cp4.1LG03g04870	CmoCh14G009930	Cucurbita moschata (Rifu)	cmocpeB245
Cp4.1LG03g04870	CmoCh17G009600	Cucurbita moschata (Rifu)	cmocpeB367
Cp4.1LG03g04870	Cla017310	Watermelon (97103) v1	cpewmB595
Cp4.1LG03g04870	Csa7G420740	Cucumber (Chinese Long) v2	cpecuB633
Cp4.1LG03g04870	Csa3G653440	Cucumber (Chinese Long) v2	cpecuB612
Cp4.1LG03g04870	MELO3C024023	Melon (DHL92) v3.5.1	cpemeB566
Cp4.1LG03g04870	MELO3C023595	Melon (DHL92) v3.5.1	cpemeB559
Cp4.1LG03g04870	ClCG09G004530	Watermelon (Charleston Gray)	cpewcgB543
Cp4.1LG03g04870	ClCG10G011950	Watermelon (Charleston Gray)	cpewcgB544
Cp4.1LG03g04870	CSPI03G29030	Wild cucumber (PI 183967)	cpecpiB614
Cp4.1LG03g04870	CSPI07G18780	Wild cucumber (PI 183967)	cpecpiB637
Cp4.1LG03g04870	Lsi02G025310	Bottle gourd (USVL1VR-Ls)	cpelsiB494
Cp4.1LG03g04870	Lsi03G011660	Bottle gourd (USVL1VR-Ls)	cpelsiB500
Cp4.1LG03g04870	MELO3C023595.2	Melon (DHL92) v3.6.1	cpemedB665
Cp4.1LG03g04870	MELO3C024023.2	Melon (DHL92) v3.6.1	cpemedB673
Cp4.1LG03g04870	CsaV3_7G030610	Cucumber (Chinese Long) v3	cpecucB0789
Cp4.1LG03g04870	CsaV3_3G031410	Cucumber (Chinese Long) v3	cpecucB0762
Cp4.1LG03g04870	Bhi11G001133	Wax gourd	cpewgoB0742
Cp4.1LG03g04870	CsGy3G026900	Cucumber (Gy14) v2	cgybcpeB409
Cp4.1LG03g04870	Carg11193	Silver-seed gourd	carcpeB1147
Cp4.1LG03g04870	Carg07080	Silver-seed gourd	carcpeB0164

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Cp4.1LG03g04870	Cp4.1LG12g06370	Cucurbita pepo (Zucchini)	cpecpeB185
Cp4.1LG03g04870	Cp4.1LG02g15900	Cucurbita pepo (Zucchini)	cpecpeB449

The following block(s) are covering this gene:


Gene	Organism	Block
Cp4.1LG03g04870	Wax gourd	cpewgoB0819
Cp4.1LG03g04870	Cucurbita pepo (Zucchini)	cpecpeB336
Cp4.1LG03g04870	Cucumber (Gy14) v1	cgycpeB0539
Cp4.1LG03g04870	Cucurbita maxima (Rimu)	cmacpeB927
Cp4.1LG03g04870	Cucurbita moschata (Rifu)	cmocpeB861
Cp4.1LG03g04870	Wild cucumber (PI 183967)	cpecpiB601
Cp4.1LG03g04870	Cucumber (Chinese Long) v2	cpecuB599
Cp4.1LG03g04870	Watermelon (97103) v1	cpewmB594
Cp4.1LG03g04870	Cucumber (Gy14) v2	cgybcpeB396
Cp4.1LG03g04870	Cucumber (Gy14) v2	cgybcpeB957
Cp4.1LG03g04870	Silver-seed gourd	carcpeB0634
Cp4.1LG03g04870	Silver-seed gourd	carcpeB1073
Cp4.1LG03g04870	Cucumber (Chinese Long) v3	cpecucB0748