Cp4.1LG03g04600 (gene) Cucurbita pepo (Zucchini)

NameCp4.1LG03g04600
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionElongation factor 1-alpha
LocationCp4.1LG03 : 5433961 .. 5434500 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTGTGTATAATTTTTGAAGTAATTTTTTTTTTTTTTTTTTTTTGGTAATTTTGTTGGTAATTATTGATTTTTAACAGTTGAGAGTGGTAGAGGAAATTAAAGGGGGCAGCAAGTCAGCAAAGAGCTCGTGTACATCTTCCCCGACAAGTGGGGCCCACACGAGCGATTATCACACATCGTCCGTTGATCTGTCTCCAAGAAGTCTGGAGAAGCACTGCCGTCCGATGAACGACGCAGTCAAAGTCACTGAACTCAAAGGAAGCCTCCTCGAGAGATTGGACAAGATTGAGGATAGAGTCCTGAAGGTAAACCCACTCATAAATTAAAATATTAAAATATTTTCAATTTAATTTAATTTAATTTTGTAAACAAATATTTAGTTTTTGGTGTGTTGAATTATGAACAGCTTTGTTTGCAAGTAGAGGGAGAGATTGAAAGGGAGAGGGAGATGATAATGGTTGAGAAGAGTAGGAAGAAGCCTAAGAAGAGCTTTAAACAACTTCTTCAACACTGTATGACCGGGTCGGGAAAGATCTGA

mRNA sequence

ATGTGTTTGAGAGTGGTAGAGGAAATTAAAGGGGGCAGCAAGTCAGCAAAGAGCTCGTGTACATCTTCCCCGACAAGTGGGGCCCACACGAGCGATTATCACACATCGTCCGTTGATCTGTCTCCAAGAAGTCTGGAGAAGCACTGCCGTCCGATGAACGACGCAGTCAAAGTCACTGAACTCAAAGGAAGCCTCCTCGAGAGATTGGACAAGATTGAGGATAGAGTCCTGAAGCTTTGTTTGCAAGTAGAGGGAGAGATTGAAAGGGAGAGGGAGATGATAATGGTTGAGAAGAGTAGGAAGAAGCCTAAGAAGAGCTTTAAACAACTTCTTCAACACTGTATGACCGGGTCGGGAAAGATCTGA

Coding sequence (CDS)

ATGTGTTTGAGAGTGGTAGAGGAAATTAAAGGGGGCAGCAAGTCAGCAAAGAGCTCGTGTACATCTTCCCCGACAAGTGGGGCCCACACGAGCGATTATCACACATCGTCCGTTGATCTGTCTCCAAGAAGTCTGGAGAAGCACTGCCGTCCGATGAACGACGCAGTCAAAGTCACTGAACTCAAAGGAAGCCTCCTCGAGAGATTGGACAAGATTGAGGATAGAGTCCTGAAGCTTTGTTTGCAAGTAGAGGGAGAGATTGAAAGGGAGAGGGAGATGATAATGGTTGAGAAGAGTAGGAAGAAGCCTAAGAAGAGCTTTAAACAACTTCTTCAACACTGTATGACCGGGTCGGGAAAGATCTGA

Protein sequence

MCLRVVEEIKGGSKSAKSSCTSSPTSGAHTSDYHTSSVDLSPRSLEKHCRPMNDAVKVTELKGSLLERLDKIEDRVLKLCLQVEGEIEREREMIMVEKSRKKPKKSFKQLLQHCMTGSGKI
BLAST of Cp4.1LG03g04600 vs. TrEMBL
Match: A0A0A0LCD9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G695850 PE=4 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 6.7e-40
Identity = 85/117 (72.65%), Postives = 102/117 (87.18%), Query Frame = 1

Query: 3   LRVVEEIKGGSKSAKSSCTSSPTSGAHTSDYHTSSVDLSPRSLEKHCRPMNDAVKVTELK 62
           LR +EEI+G  KS KSSC S+P+SG  TSDYHTSSVDLSP+SLEKHCRP+N  VKV ELK
Sbjct: 19  LRRLEEIRGCGKSPKSSCASTPSSGTLTSDYHTSSVDLSPKSLEKHCRPINHVVKVAELK 78

Query: 63  GSLLERLDKIEDRVLKLCLQVEGEIEREREMIMVEKSRKKPKKSFKQLLQHCMTGSG 120
           GSL+ER+D +EDRVLKLC+QVEG++ERE++MIMVEK  +KPK+SFKQL+Q CMTG G
Sbjct: 79  GSLVERMDNLEDRVLKLCIQVEGDLEREKDMIMVEKKERKPKRSFKQLVQRCMTGQG 135

BLAST of Cp4.1LG03g04600 vs. TrEMBL
Match: D7T306_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_13s0064g00910 PE=4 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 9.8e-23
Identity = 69/117 (58.97%), Postives = 88/117 (75.21%), Query Frame = 1

Query: 3   LRVVEEIKGGSKSAKSSCTSSPTSGAHTSDYHTSSVDLSPRSLEKH-CRPMNDAVKVTEL 62
           LR +EEI+G S+S+KSSC S+P+SGA TSD  TSSVDLSP+SLEKH CRP+ D    TE+
Sbjct: 60  LRQLEEIRGCSRSSKSSCASTPSSGALTSDGQTSSVDLSPKSLEKHQCRPIADVRTETEV 119

Query: 63  KGSLLERLDKIEDRVLKLCLQVEGEIEREREMIMVEKSRKKP-KKSFKQLLQHCMTG 118
           KGSL+ERL ++E R+LKLCLQVE E+E E+     EK+R K  KK  KQ ++ C+ G
Sbjct: 120 KGSLMERLVQVEVRLLKLCLQVEEELEEEKR--REEKARSKAHKKGLKQFVKSCVKG 174

BLAST of Cp4.1LG03g04600 vs. TrEMBL
Match: B9T1P6_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0493230 PE=4 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 2.2e-22
Identity = 58/115 (50.43%), Postives = 85/115 (73.91%), Query Frame = 1

Query: 3   LRVVEEIKGGSKSAKSSCTSSPTSGAHTSDYHTSSVDLSPRSLEKHCRPMNDAVKVTELK 62
           LR +E+++G ++S KSSC S+P+SG  TS+ H SS+DLSP+SLEKHCRP+N  +  TE+K
Sbjct: 19  LRQLEDMRGSNRSPKSSCASTPSSGTLTSEGHVSSIDLSPKSLEKHCRPINRVMMETEIK 78

Query: 63  GSLLERLDKIEDRVLKLCLQVEGEIEREREMIMVEKSRKKPKKSFKQLLQHCMTG 118
           G+L+ERLD +EDR+LKLC+Q+E  +E ER+     + R   KK  K L+++ + G
Sbjct: 79  GTLVERLDLLEDRLLKLCMQLEEGLEAERKREEENRERSGKKKGLKGLVRNIVKG 133

BLAST of Cp4.1LG03g04600 vs. TrEMBL
Match: A0A061DWD6_THECC (Cellulose synthase OS=Theobroma cacao GN=TCM_005879 PE=3 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 1.1e-21
Identity = 60/116 (51.72%), Postives = 85/116 (73.28%), Query Frame = 1

Query: 3    LRVVEEIKGGSKSAKSSCTSSPTSGAHTSDYHTSSVDL-SPRSLEKHCRPMNDAVKVTEL 62
            LR +EEI+G SKS +SSC S+P+SG  TS+ H SSVDL SP SLEKHCRP++  +  T++
Sbjct: 1101 LRQLEEIRGCSKSPRSSCASTPSSGTFTSEGHPSSVDLASPSSLEKHCRPIDHVMVETQV 1160

Query: 63   KGSLLERLDKIEDRVLKLCLQVEGEIEREREMIMVEKSRKKPKKSFKQLLQHCMTG 118
            KG+L++RLD++EDR+LKLCL++E E+E E+      + R   KK  KQ ++ C+ G
Sbjct: 1161 KGTLIQRLDQLEDRLLKLCLRLEEELEAEKRREESVEKRPAHKKGIKQFVKQCVKG 1216

BLAST of Cp4.1LG03g04600 vs. TrEMBL
Match: A0A0R0GRF8_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_13G202600 PE=4 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 1.8e-21
Identity = 61/118 (51.69%), Postives = 84/118 (71.19%), Query Frame = 1

Query: 3   LRVVEEIKGGSKSAKSSCTSSPTSGAHTSDYHTSSVDLSPRSLEKHCRPMNDAVKVTELK 62
           LR +E I+G + S KSSC S+PTSG   SD H SS D SP+SLEKHCRP+   +  TE+K
Sbjct: 19  LRQLEVIRGCNPSPKSSCASTPTSG---SDGHVSSTDFSPKSLEKHCRPIEFVMMETEVK 78

Query: 63  GSLLERLDKIEDRVLKLCLQVEGEIEREREMIMVEKSRKKPKKSFKQLLQHCMTGSGK 121
           G+++ERL+++EDR+LKLCLQ+E E+  +++    EK    PKK FKQL++ C+   GK
Sbjct: 79  GTMIERLNQVEDRMLKLCLQLEEELVAKKK--EEEKKMNSPKKGFKQLVKQCVKARGK 131

BLAST of Cp4.1LG03g04600 vs. TAIR10
Match: AT1G07985.1 (AT1G07985.1 Expressed protein)

HSP 1 Score: 71.2 bits (173), Expect = 4.8e-13
Identity = 51/106 (48.11%), Postives = 69/106 (65.09%), Query Frame = 1

Query: 3   LRVVEEIKGGSKSAKSSCTSSPTSGAHTSDYHTSSVDLS-PRSLEK-HCRPMNDAVKVTE 62
           +R +EE+KG S   +SS  S+P+SG   S     S+DLS PRS+ K HCR M    + TE
Sbjct: 19  VRKLEEMKGSSP--RSSSPSTPSSGTQPS-----SMDLSSPRSIGKVHCRSMEQVREETE 78

Query: 63  LKGSLLERLDKIEDRVLKLCLQVEGEIEREREM-IMVEKSRKKPKK 106
            KG+LLERL+ +E++VLKLC Q E E+E ER+     +K +K PKK
Sbjct: 79  RKGTLLERLNNVEEQVLKLCSQFEEEVEEERKREDKTDKEKKTPKK 117

BLAST of Cp4.1LG03g04600 vs. NCBI nr
Match: gi|449466687|ref|XP_004151057.1| (PREDICTED: uncharacterized protein LOC101205386 [Cucumis sativus])

HSP 1 Score: 171.4 bits (433), Expect = 9.6e-40
Identity = 85/117 (72.65%), Postives = 102/117 (87.18%), Query Frame = 1

Query: 3   LRVVEEIKGGSKSAKSSCTSSPTSGAHTSDYHTSSVDLSPRSLEKHCRPMNDAVKVTELK 62
           LR +EEI+G  KS KSSC S+P+SG  TSDYHTSSVDLSP+SLEKHCRP+N  VKV ELK
Sbjct: 19  LRRLEEIRGCGKSPKSSCASTPSSGTLTSDYHTSSVDLSPKSLEKHCRPINHVVKVAELK 78

Query: 63  GSLLERLDKIEDRVLKLCLQVEGEIEREREMIMVEKSRKKPKKSFKQLLQHCMTGSG 120
           GSL+ER+D +EDRVLKLC+QVEG++ERE++MIMVEK  +KPK+SFKQL+Q CMTG G
Sbjct: 79  GSLVERMDNLEDRVLKLCIQVEGDLEREKDMIMVEKKERKPKRSFKQLVQRCMTGQG 135

BLAST of Cp4.1LG03g04600 vs. NCBI nr
Match: gi|659123713|ref|XP_008461800.1| (PREDICTED: uncharacterized protein LOC103500315 [Cucumis melo])

HSP 1 Score: 169.5 bits (428), Expect = 3.7e-39
Identity = 86/118 (72.88%), Postives = 104/118 (88.14%), Query Frame = 1

Query: 3   LRVVEEIKGGSKSAKSSCTSSPTSGAHTSDYHTSSVDLSPRSLEKHCRPMNDAVKVTELK 62
           LR +EEIKG +KS KSSC S+P+SG  TSDYHTSSVDLSP+SLEKHCRP+N  V+V ELK
Sbjct: 19  LRRLEEIKGCAKSPKSSCASTPSSGTLTSDYHTSSVDLSPKSLEKHCRPINHVVRVAELK 78

Query: 63  GSLLERLDKIEDRVLKLCLQVEGEIEREREMIMV-EKSRKKPKKSFKQLLQHCMTGSG 120
           GSL+ER+D +EDRVLKLC+QVEGE+ERE++M+MV +K +KKPKKSFKQL+Q CMTG G
Sbjct: 79  GSLVERMDNLEDRVLKLCIQVEGEMEREKDMVMVDQKKKKKPKKSFKQLVQQCMTGQG 136

BLAST of Cp4.1LG03g04600 vs. NCBI nr
Match: gi|297736249|emb|CBI24887.3| (unnamed protein product [Vitis vinifera])

HSP 1 Score: 114.4 bits (285), Expect = 1.4e-22
Identity = 69/117 (58.97%), Postives = 88/117 (75.21%), Query Frame = 1

Query: 3   LRVVEEIKGGSKSAKSSCTSSPTSGAHTSDYHTSSVDLSPRSLEKH-CRPMNDAVKVTEL 62
           LR +EEI+G S+S+KSSC S+P+SGA TSD  TSSVDLSP+SLEKH CRP+ D    TE+
Sbjct: 60  LRQLEEIRGCSRSSKSSCASTPSSGALTSDGQTSSVDLSPKSLEKHQCRPIADVRTETEV 119

Query: 63  KGSLLERLDKIEDRVLKLCLQVEGEIEREREMIMVEKSRKKP-KKSFKQLLQHCMTG 118
           KGSL+ERL ++E R+LKLCLQVE E+E E+     EK+R K  KK  KQ ++ C+ G
Sbjct: 120 KGSLMERLVQVEVRLLKLCLQVEEELEEEKR--REEKARSKAHKKGLKQFVKSCVKG 174

BLAST of Cp4.1LG03g04600 vs. NCBI nr
Match: gi|731414946|ref|XP_010659345.1| (PREDICTED: uncharacterized protein LOC100249968 [Vitis vinifera])

HSP 1 Score: 114.4 bits (285), Expect = 1.4e-22
Identity = 69/117 (58.97%), Postives = 88/117 (75.21%), Query Frame = 1

Query: 3   LRVVEEIKGGSKSAKSSCTSSPTSGAHTSDYHTSSVDLSPRSLEKH-CRPMNDAVKVTEL 62
           LR +EEI+G S+S+KSSC S+P+SGA TSD  TSSVDLSP+SLEKH CRP+ D    TE+
Sbjct: 19  LRQLEEIRGCSRSSKSSCASTPSSGALTSDGQTSSVDLSPKSLEKHQCRPIADVRTETEV 78

Query: 63  KGSLLERLDKIEDRVLKLCLQVEGEIEREREMIMVEKSRKKP-KKSFKQLLQHCMTG 118
           KGSL+ERL ++E R+LKLCLQVE E+E E+     EK+R K  KK  KQ ++ C+ G
Sbjct: 79  KGSLMERLVQVEVRLLKLCLQVEEELEEEKR--REEKARSKAHKKGLKQFVKSCVKG 133

BLAST of Cp4.1LG03g04600 vs. NCBI nr
Match: gi|1021556666|ref|XP_016169661.1| (PREDICTED: uncharacterized protein LOC107612483 isoform X1 [Arachis ipaensis])

HSP 1 Score: 114.4 bits (285), Expect = 1.4e-22
Identity = 64/119 (53.78%), Postives = 86/119 (72.27%), Query Frame = 1

Query: 3   LRVVEEIKGGSKSAKSSCTSSPTSGAHTSDYHTSSVDLSPRSLEKHCRPMNDAVKVTELK 62
           LR +EEI+G ++S+KSSC S+PTS    SD   SS+D SP+SLEKHCRP+ + +   E K
Sbjct: 19  LRQLEEIRGCNRSSKSSCASTPTSA---SDGRISSLDFSPKSLEKHCRPIENVIMEAEAK 78

Query: 63  GSLLERLDKIEDRVLKLCLQVEGEIEREREMIMVEKSRK-KPKKSFKQLLQHCMTGSGK 121
           G+L++RL  +EDRVLKLCLQ+E E E ER+M   +K ++ K KK FKQL+Q C+   GK
Sbjct: 79  GTLIQRLSHVEDRVLKLCLQLEDEWEAERKMEQEKKMKQPKKKKGFKQLMQQCLNVRGK 134

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0LCD9_CUCSA6.7e-4072.65Uncharacterized protein OS=Cucumis sativus GN=Csa_3G695850 PE=4 SV=1[more]
D7T306_VITVI9.8e-2358.97Putative uncharacterized protein OS=Vitis vinifera GN=VIT_13s0064g00910 PE=4 SV=... [more]
B9T1P6_RICCO2.2e-2250.43Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0493230 PE=4 SV=1[more]
A0A061DWD6_THECC1.1e-2151.72Cellulose synthase OS=Theobroma cacao GN=TCM_005879 PE=3 SV=1[more]
A0A0R0GRF8_SOYBN1.8e-2151.69Uncharacterized protein OS=Glycine max GN=GLYMA_13G202600 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT1G07985.14.8e-1348.11 Expressed protein[more]
Match NameE-valueIdentityDescription
gi|449466687|ref|XP_004151057.1|9.6e-4072.65PREDICTED: uncharacterized protein LOC101205386 [Cucumis sativus][more]
gi|659123713|ref|XP_008461800.1|3.7e-3972.88PREDICTED: uncharacterized protein LOC103500315 [Cucumis melo][more]
gi|297736249|emb|CBI24887.3|1.4e-2258.97unnamed protein product [Vitis vinifera][more]
gi|731414946|ref|XP_010659345.1|1.4e-2258.97PREDICTED: uncharacterized protein LOC100249968 [Vitis vinifera][more]
gi|1021556666|ref|XP_016169661.1|1.4e-2253.78PREDICTED: uncharacterized protein LOC107612483 isoform X1 [Arachis ipaensis][more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG03g04600.1Cp4.1LG03g04600.1mRNA


The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG03g04600Wax gourdcpewgoB0742
Cp4.1LG03g04600Wax gourdcpewgoB0822
Cp4.1LG03g04600Cucurbita pepo (Zucchini)cpecpeB185
Cp4.1LG03g04600Cucurbita pepo (Zucchini)cpecpeB336
Cp4.1LG03g04600Cucurbita pepo (Zucchini)cpecpeB449
Cp4.1LG03g04600Cucumber (Gy14) v1cgycpeB0337
Cp4.1LG03g04600Cucurbita maxima (Rimu)cmacpeB283
Cp4.1LG03g04600Cucurbita maxima (Rimu)cmacpeB404
Cp4.1LG03g04600Cucurbita maxima (Rimu)cmacpeB494
Cp4.1LG03g04600Cucurbita maxima (Rimu)cmacpeB927
Cp4.1LG03g04600Cucurbita moschata (Rifu)cmocpeB245
Cp4.1LG03g04600Cucurbita moschata (Rifu)cmocpeB367
Cp4.1LG03g04600Cucurbita moschata (Rifu)cmocpeB453
Cp4.1LG03g04600Cucurbita moschata (Rifu)cmocpeB861
Cp4.1LG03g04600Wild cucumber (PI 183967)cpecpiB601
Cp4.1LG03g04600Wild cucumber (PI 183967)cpecpiB637
Cp4.1LG03g04600Cucumber (Chinese Long) v2cpecuB599
Cp4.1LG03g04600Cucumber (Chinese Long) v2cpecuB633
Cp4.1LG03g04600Bottle gourd (USVL1VR-Ls)cpelsiB494
Cp4.1LG03g04600Bottle gourd (USVL1VR-Ls)cpelsiB500
Cp4.1LG03g04600Watermelon (Charleston Gray)cpewcgB543
Cp4.1LG03g04600Watermelon (Charleston Gray)cpewcgB544
Cp4.1LG03g04600Watermelon (97103) v1cpewmB594
Cp4.1LG03g04600Watermelon (97103) v1cpewmB595
Cp4.1LG03g04600Melon (DHL92) v3.5.1cpemeB559
Cp4.1LG03g04600Melon (DHL92) v3.5.1cpemeB566
Cp4.1LG03g04600Cucumber (Gy14) v2cgybcpeB396
Cp4.1LG03g04600Cucumber (Gy14) v2cgybcpeB957
Cp4.1LG03g04600Melon (DHL92) v3.6.1cpemedB665
Cp4.1LG03g04600Melon (DHL92) v3.6.1cpemedB673
Cp4.1LG03g04600Silver-seed gourdcarcpeB0634
Cp4.1LG03g04600Silver-seed gourdcarcpeB1073
Cp4.1LG03g04600Silver-seed gourdcarcpeB1147
Cp4.1LG03g04600Cucumber (Chinese Long) v3cpecucB0748
Cp4.1LG03g04600Cucumber (Chinese Long) v3cpecucB0789