Cp4.1LG03g04470 (gene) Cucurbita pepo (Zucchini)

NameCp4.1LG03g04470
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
Descriptionarabinogalactan protein 23
LocationCp4.1LG03 : 5520567 .. 5520752 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGATGAAGAAGATCGCCTGCGCCGTCCTCTTCGCTGCCGCAACCGTCAGCGCCGTCGTGGCTCACGACGAGGCGTTGGCTCCAGCACCTGGACCAAGCAGCGGTGCCGCTGCCGGCCTTCCAGCAATCGGCTCTGTCATTGGCGCTTCGTTGCTCTCTGTCGCGGCCTACTACCTGCAATGA

mRNA sequence

ATGGAGATGAAGAAGATCGCCTGCGCCGTCCTCTTCGCTGCCGCAACCGTCAGCGCCGTCGTGGCTCACGACGAGGCGTTGGCTCCAGCACCTGGACCAAGCAGCGGTGCCGCTGCCGGCCTTCCAGCAATCGGCTCTGTCATTGGCGCTTCGTTGCTCTCTGTCGCGGCCTACTACCTGCAATGA

Coding sequence (CDS)

ATGGAGATGAAGAAGATCGCCTGCGCCGTCCTCTTCGCTGCCGCAACCGTCAGCGCCGTCGTGGCTCACGACGAGGCGTTGGCTCCAGCACCTGGACCAAGCAGCGGTGCCGCTGCCGGCCTTCCAGCAATCGGCTCTGTCATTGGCGCTTCGTTGCTCTCTGTCGCGGCCTACTACCTGCAATGA

Protein sequence

MEMKKIACAVLFAAATVSAVVAHDEALAPAPGPSSGAAAGLPAIGSVIGASLLSVAAYYLQ
BLAST of Cp4.1LG03g04470 vs. Swiss-Prot
Match: AGP23_ARATH (Arabinogalactan peptide 23 OS=Arabidopsis thaliana GN=AGP23 PE=2 SV=2)

HSP 1 Score: 72.8 bits (177), Expect = 1.5e-12
Identity = 40/60 (66.67%), Postives = 53/60 (88.33%), Query Frame = 1

Query: 1  MEMKKIACAVLFAAATVSAVVAHDEALAPAPGPSSGAAAGLPAIGSVIGASLLSVAAYYL 60
          MEMKKIAC VLFAAA+++AV+A +E  APAPGP+S A+A LPA+GS++GASL+S+ +YYL
Sbjct: 1  MEMKKIACGVLFAAASMTAVMAAEEVGAPAPGPASAASAALPALGSLVGASLVSLFSYYL 60

BLAST of Cp4.1LG03g04470 vs. TrEMBL
Match: A0A0A0L9U8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G697910 PE=4 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 4.5e-16
Identity = 52/60 (86.67%), Postives = 56/60 (93.33%), Query Frame = 1

Query: 1  MEMKKIACAVLFAAATVSAVVAHDEALAPAPGPSSGAAAGLPAIGSVIGASLLSVAAYYL 60
          MEMKKIACAVLFAAATV+AVVA DEALAPAPGPSSGA  G+PAIGS++GASLLS AAYYL
Sbjct: 1  MEMKKIACAVLFAAATVTAVVAADEALAPAPGPSSGAGIGVPAIGSLVGASLLSFAAYYL 60

BLAST of Cp4.1LG03g04470 vs. TrEMBL
Match: W9SPR6_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_000818 PE=4 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 2.5e-11
Identity = 41/60 (68.33%), Postives = 51/60 (85.00%), Query Frame = 1

Query: 1  MEMKKIACAVLFAAATVSAVVAHDEALAPAPGPSSGAAAGLPAIGSVIGASLLSVAAYYL 60
          MEMKKIACAV+FAAA+VSAV+A+D   APAP P+ G +A LPA+GS++GASL+S  AYYL
Sbjct: 1  MEMKKIACAVIFAAASVSAVMANDAVAAPAPAPTGGTSASLPALGSLVGASLVSFVAYYL 60

BLAST of Cp4.1LG03g04470 vs. TrEMBL
Match: A0A059DIY4_EUCGR (Uncharacterized protein (Fragment) OS=Eucalyptus grandis GN=EUGRSUZ_A02403 PE=4 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 4.3e-11
Identity = 41/61 (67.21%), Postives = 53/61 (86.89%), Query Frame = 1

Query: 1  MEMKKIACAVLFAAATVSAVVAHDEALAPAPGPSSGAAAGLPAIGSVIGASLLSVAAYYL 60
          M+MKKI+CAVL AAA++SAV+A D++ APAPGPSSGA+A LP  GS++GAS++S  AYYL
Sbjct: 34 MDMKKISCAVLVAAASMSAVLASDDSPAPAPGPSSGASAALPVFGSLVGASVVSFFAYYL 93

Query: 61 Q 62
          Q
Sbjct: 94 Q 94

BLAST of Cp4.1LG03g04470 vs. TrEMBL
Match: A0A078CAG3_BRANA (BnaC08g28710D protein OS=Brassica napus GN=BnaC08g28710D PE=4 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 9.6e-11
Identity = 41/60 (68.33%), Postives = 54/60 (90.00%), Query Frame = 1

Query: 1  MEMKKIACAVLFAAATVSAVVAHDEALAPAPGPSSGAAAGLPAIGSVIGASLLSVAAYYL 60
          MEMKKIAC VLFAAA+++AV+A +EA APAPGP+S A+A LPA+GS+IGASL+S+ +YY+
Sbjct: 1  MEMKKIACGVLFAAASMTAVMAVEEAGAPAPGPASAASAALPALGSLIGASLVSLFSYYM 60

BLAST of Cp4.1LG03g04470 vs. TrEMBL
Match: A0A0D3DU11_BRAOL (Uncharacterized protein OS=Brassica oleracea var. oleracea PE=4 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 9.6e-11
Identity = 41/60 (68.33%), Postives = 54/60 (90.00%), Query Frame = 1

Query: 1  MEMKKIACAVLFAAATVSAVVAHDEALAPAPGPSSGAAAGLPAIGSVIGASLLSVAAYYL 60
          MEMKKIAC VLFAAA+++AV+A +EA APAPGP+S A+A LPA+GS+IGASL+S+ +YY+
Sbjct: 1  MEMKKIACGVLFAAASMTAVMAVEEAGAPAPGPASAASAALPALGSLIGASLVSLFSYYM 60

BLAST of Cp4.1LG03g04470 vs. TAIR10
Match: AT3G57690.1 (AT3G57690.1 arabinogalactan protein 23)

HSP 1 Score: 72.8 bits (177), Expect = 8.3e-14
Identity = 40/60 (66.67%), Postives = 53/60 (88.33%), Query Frame = 1

Query: 1  MEMKKIACAVLFAAATVSAVVAHDEALAPAPGPSSGAAAGLPAIGSVIGASLLSVAAYYL 60
          MEMKKIAC VLFAAA+++AV+A +E  APAPGP+S A+A LPA+GS++GASL+S+ +YYL
Sbjct: 1  MEMKKIACGVLFAAASMTAVMAAEEVGAPAPGPASAASAALPALGSLVGASLVSLFSYYL 60

BLAST of Cp4.1LG03g04470 vs. TAIR10
Match: AT2G41905.1 (AT2G41905.1 BEST Arabidopsis thaliana protein match is: arabinogalactan protein 23 (TAIR:AT3G57690.1))

HSP 1 Score: 62.4 bits (150), Expect = 1.1e-10
Identity = 39/61 (63.93%), Postives = 52/61 (85.25%), Query Frame = 1

Query: 1  MEMKKIACAVLFAAATVSAVVAHDEALAPAPGPS-SGAAAGLPAIGSVIGASLLSVAAYY 60
          MEMKKIAC V+FAAA+++AV+A  E  APAPGP+ SGA+  +PA+GS++GASL+S+ AYY
Sbjct: 1  MEMKKIACGVVFAAASMTAVMAA-EVGAPAPGPAASGASVAVPALGSLVGASLVSLFAYY 60

BLAST of Cp4.1LG03g04470 vs. NCBI nr
Match: gi|700203465|gb|KGN58598.1| (hypothetical protein Csa_3G697910 [Cucumis sativus])

HSP 1 Score: 91.3 bits (225), Expect = 6.4e-16
Identity = 52/60 (86.67%), Postives = 56/60 (93.33%), Query Frame = 1

Query: 1  MEMKKIACAVLFAAATVSAVVAHDEALAPAPGPSSGAAAGLPAIGSVIGASLLSVAAYYL 60
          MEMKKIACAVLFAAATV+AVVA DEALAPAPGPSSGA  G+PAIGS++GASLLS AAYYL
Sbjct: 1  MEMKKIACAVLFAAATVTAVVAADEALAPAPGPSSGAGIGVPAIGSLVGASLLSFAAYYL 60

BLAST of Cp4.1LG03g04470 vs. NCBI nr
Match: gi|703130749|ref|XP_010104709.1| (hypothetical protein L484_000818 [Morus notabilis])

HSP 1 Score: 75.5 bits (184), Expect = 3.6e-11
Identity = 41/60 (68.33%), Postives = 51/60 (85.00%), Query Frame = 1

Query: 1  MEMKKIACAVLFAAATVSAVVAHDEALAPAPGPSSGAAAGLPAIGSVIGASLLSVAAYYL 60
          MEMKKIACAV+FAAA+VSAV+A+D   APAP P+ G +A LPA+GS++GASL+S  AYYL
Sbjct: 1  MEMKKIACAVIFAAASVSAVMANDAVAAPAPAPTGGTSASLPALGSLVGASLVSFVAYYL 60

BLAST of Cp4.1LG03g04470 vs. NCBI nr
Match: gi|629125825|gb|KCW90250.1| (hypothetical protein EUGRSUZ_A02403, partial [Eucalyptus grandis])

HSP 1 Score: 74.7 bits (182), Expect = 6.2e-11
Identity = 41/61 (67.21%), Postives = 53/61 (86.89%), Query Frame = 1

Query: 1  MEMKKIACAVLFAAATVSAVVAHDEALAPAPGPSSGAAAGLPAIGSVIGASLLSVAAYYL 60
          M+MKKI+CAVL AAA++SAV+A D++ APAPGPSSGA+A LP  GS++GAS++S  AYYL
Sbjct: 34 MDMKKISCAVLVAAASMSAVLASDDSPAPAPGPSSGASAALPVFGSLVGASVVSFFAYYL 93

Query: 61 Q 62
          Q
Sbjct: 94 Q 94

BLAST of Cp4.1LG03g04470 vs. NCBI nr
Match: gi|674961597|emb|CDX72003.1| (BnaC08g28710D [Brassica napus])

HSP 1 Score: 73.6 bits (179), Expect = 1.4e-10
Identity = 41/60 (68.33%), Postives = 54/60 (90.00%), Query Frame = 1

Query: 1  MEMKKIACAVLFAAATVSAVVAHDEALAPAPGPSSGAAAGLPAIGSVIGASLLSVAAYYL 60
          MEMKKIAC VLFAAA+++AV+A +EA APAPGP+S A+A LPA+GS+IGASL+S+ +YY+
Sbjct: 1  MEMKKIACGVLFAAASMTAVMAVEEAGAPAPGPASAASAALPALGSLIGASLVSLFSYYM 60

BLAST of Cp4.1LG03g04470 vs. NCBI nr
Match: gi|224106059|ref|XP_002314029.1| (hypothetical protein POPTR_0009s06810g [Populus trichocarpa])

HSP 1 Score: 72.8 bits (177), Expect = 2.4e-10
Identity = 43/61 (70.49%), Postives = 51/61 (83.61%), Query Frame = 1

Query: 1  MEMKKIACAVLFAAATVSAVVAHDEALAPAPGPSSGAAAGLPAIGSVIGASLLSVAAYYL 60
          MEMKKIACA+LFAAA+VSAV+A DE  APAP P+SGA+A LP +GS++GASL S  A YL
Sbjct: 1  MEMKKIACAILFAAASVSAVMA-DEVAAPAPSPASGASASLPIVGSLVGASLASFIALYL 60

Query: 61 Q 62
          Q
Sbjct: 61 Q 60

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
AGP23_ARATH1.5e-1266.67Arabinogalactan peptide 23 OS=Arabidopsis thaliana GN=AGP23 PE=2 SV=2[more]
Match NameE-valueIdentityDescription
A0A0A0L9U8_CUCSA4.5e-1686.67Uncharacterized protein OS=Cucumis sativus GN=Csa_3G697910 PE=4 SV=1[more]
W9SPR6_9ROSA2.5e-1168.33Uncharacterized protein OS=Morus notabilis GN=L484_000818 PE=4 SV=1[more]
A0A059DIY4_EUCGR4.3e-1167.21Uncharacterized protein (Fragment) OS=Eucalyptus grandis GN=EUGRSUZ_A02403 PE=4 ... [more]
A0A078CAG3_BRANA9.6e-1168.33BnaC08g28710D protein OS=Brassica napus GN=BnaC08g28710D PE=4 SV=1[more]
A0A0D3DU11_BRAOL9.6e-1168.33Uncharacterized protein OS=Brassica oleracea var. oleracea PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT3G57690.18.3e-1466.67 arabinogalactan protein 23[more]
AT2G41905.11.1e-1063.93 BEST Arabidopsis thaliana protein match is: arabinogalactan protein ... [more]
Match NameE-valueIdentityDescription
gi|700203465|gb|KGN58598.1|6.4e-1686.67hypothetical protein Csa_3G697910 [Cucumis sativus][more]
gi|703130749|ref|XP_010104709.1|3.6e-1168.33hypothetical protein L484_000818 [Morus notabilis][more]
gi|629125825|gb|KCW90250.1|6.2e-1167.21hypothetical protein EUGRSUZ_A02403, partial [Eucalyptus grandis][more]
gi|674961597|emb|CDX72003.1|1.4e-1068.33BnaC08g28710D [Brassica napus][more]
gi|224106059|ref|XP_002314029.1|2.4e-1070.49hypothetical protein POPTR_0009s06810g [Populus trichocarpa][more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG03g04470.1Cp4.1LG03g04470.1mRNA


The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG03g04470Cucurbita pepo (Zucchini)cpecpeB185
Cp4.1LG03g04470Cucurbita pepo (Zucchini)cpecpeB336
Cp4.1LG03g04470Cucurbita pepo (Zucchini)cpecpeB449
Cp4.1LG03g04470Cucumber (Gy14) v1cgycpeB0550
Cp4.1LG03g04470Cucurbita maxima (Rimu)cmacpeB283
Cp4.1LG03g04470Cucurbita maxima (Rimu)cmacpeB404
Cp4.1LG03g04470Cucurbita maxima (Rimu)cmacpeB494
Cp4.1LG03g04470Cucurbita maxima (Rimu)cmacpeB927
Cp4.1LG03g04470Cucurbita moschata (Rifu)cmocpeB245
Cp4.1LG03g04470Cucurbita moschata (Rifu)cmocpeB367
Cp4.1LG03g04470Cucurbita moschata (Rifu)cmocpeB453
Cp4.1LG03g04470Cucurbita moschata (Rifu)cmocpeB861
Cp4.1LG03g04470Wild cucumber (PI 183967)cpecpiB601
Cp4.1LG03g04470Wild cucumber (PI 183967)cpecpiB637
Cp4.1LG03g04470Cucumber (Chinese Long) v2cpecuB599
Cp4.1LG03g04470Cucumber (Chinese Long) v2cpecuB633
Cp4.1LG03g04470Bottle gourd (USVL1VR-Ls)cpelsiB494
Cp4.1LG03g04470Bottle gourd (USVL1VR-Ls)cpelsiB500
Cp4.1LG03g04470Watermelon (Charleston Gray)cpewcgB544
Cp4.1LG03g04470Watermelon (97103) v1cpewmB595
Cp4.1LG03g04470Melon (DHL92) v3.5.1cpemeB559
Cp4.1LG03g04470Melon (DHL92) v3.5.1cpemeB566
Cp4.1LG03g04470Cucumber (Gy14) v2cgybcpeB396
Cp4.1LG03g04470Cucumber (Gy14) v2cgybcpeB957
Cp4.1LG03g04470Melon (DHL92) v3.6.1cpemedB665
Cp4.1LG03g04470Melon (DHL92) v3.6.1cpemedB673
Cp4.1LG03g04470Silver-seed gourdcarcpeB0634
Cp4.1LG03g04470Silver-seed gourdcarcpeB1073
Cp4.1LG03g04470Silver-seed gourdcarcpeB1147
Cp4.1LG03g04470Cucumber (Chinese Long) v3cpecucB0748
Cp4.1LG03g04470Cucumber (Chinese Long) v3cpecucB0789
Cp4.1LG03g04470Wax gourdcpewgoB0742
Cp4.1LG03g04470Wax gourdcpewgoB0822