Cp4.1LG03g04450 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG03g04450
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionUnknown protein
LocationCp4.1LG03 : 5522071 .. 5522295 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGGTTTCCATGAGACTCCCTCATTATTATGCTACTGCTGCTGTTTTGGCCCTTGCAATGCTGTGCTTCGAGATGAAGAAGGTCCATGGCATCGAGGCTGAGATATCTCCAATGCCTGCCATGGCTGCCGGCTCTGCATCTCCTTCTACTGTTGCCTATGCCTTCAATTCTGTATTCCCTCTGCTCTGTACTTTTGGTTTTCAAGCCTTCTTCTTGTCCTAA

mRNA sequence

ATGGCGGTTTCCATGAGACTCCCTCATTATTATGCTACTGCTGCTGTTTTGGCCCTTGCAATGCTGTGCTTCGAGATGAAGAAGGTCCATGGCATCGAGGCTGAGATATCTCCAATGCCTGCCATGGCTGCCGGCTCTGCATCTCCTTCTACTGTTGCCTATGCCTTCAATTCTGTATTCCCTCTGCTCTGTACTTTTGGTTTTCAAGCCTTCTTCTTGTCCTAA

Coding sequence (CDS)

ATGGCGGTTTCCATGAGACTCCCTCATTATTATGCTACTGCTGCTGTTTTGGCCCTTGCAATGCTGTGCTTCGAGATGAAGAAGGTCCATGGCATCGAGGCTGAGATATCTCCAATGCCTGCCATGGCTGCCGGCTCTGCATCTCCTTCTACTGTTGCCTATGCCTTCAATTCTGTATTCCCTCTGCTCTGTACTTTTGGTTTTCAAGCCTTCTTCTTGTCCTAA

Protein sequence

MAVSMRLPHYYATAAVLALAMLCFEMKKVHGIEAEISPMPAMAAGSASPSTVAYAFNSVFPLLCTFGFQAFFLS
Homology
[Close]
BLAST of Cp4.1LG03g04450 vs. TrEMBL
Match: A0A0A0LCE5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G697920 PE=4 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 2.4e-11
Identity = 43/68 (63.24%), Postives = 48/68 (70.59%), Query Frame = 1 

Query: 1  MAVSMRLPHYYATAAVLALAMLCFEMKKVHGIEAEISPMPAMAAGSASPSTVAYAFNSVF 60
          MA SMR PH+   A VL LAM+  EMKKV  IE E++PMPAMAAG A PS+VA  FN V 
Sbjct: 1  MASSMRFPHFVVVAVVLVLAMVSIEMKKVDSIEDELAPMPAMAAGFAFPSSVALGFNFVV 60

Query: 61 P-LLCTFG 68
          P LLC FG
Sbjct: 61 PLLLCVFG 68

[Close]
BLAST of Cp4.1LG03g04450 vs. NCBI nr
Match: gi|700203466|gb|KGN58599.1| (hypothetical protein Csa_3G697920 [Cucumis sativus])

HSP 1 Score: 75.9 bits (185), Expect = 3.4e-11
Identity = 43/68 (63.24%), Postives = 48/68 (70.59%), Query Frame = 1 

Query: 1  MAVSMRLPHYYATAAVLALAMLCFEMKKVHGIEAEISPMPAMAAGSASPSTVAYAFNSVF 60
          MA SMR PH+   A VL LAM+  EMKKV  IE E++PMPAMAAG A PS+VA  FN V 
Sbjct: 1  MASSMRFPHFVVVAVVLVLAMVSIEMKKVDSIEDELAPMPAMAAGFAFPSSVALGFNFVV 60

Query: 61 P-LLCTFG 68
          P LLC FG
Sbjct: 61 PLLLCVFG 68

The following BLAST results are available for this feature:
BLAST of Cp4.1LG03g04450 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG03g04450 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LCE5_CUCSA2.4e-1163.24Uncharacterized protein OS=Cucumis sativus GN=Csa_3G697920 PE=4 SV=1[more]
BLAST of Cp4.1LG03g04450 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG03g04450 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700203466|gb|KGN58599.1|3.4e-1163.24hypothetical protein Csa_3G697920 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG03g04450.1Cp4.1LG03g04450.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG03g04450CmaCh14G010120Cucurbita maxima (Rimu)cmacpeB283
Cp4.1LG03g04450CmoCh14G010280Cucurbita moschata (Rifu)cmocpeB245
Cp4.1LG03g04450Cla017261Watermelon (97103) v1cpewmB595
Cp4.1LG03g04450ClCG10G012460Watermelon (Charleston Gray)cpewcgB544
Cp4.1LG03g04450CsaV3_3G032230Cucumber (Chinese Long) v3cpecucB0748
Cp4.1LG03g04450Bhi11G001188Wax gourdcpewgoB0742
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG03g04450Wax gourdcpewgoB0822
Cp4.1LG03g04450Cucurbita pepo (Zucchini)cpecpeB185
Cp4.1LG03g04450Cucurbita pepo (Zucchini)cpecpeB336
Cp4.1LG03g04450Cucurbita pepo (Zucchini)cpecpeB449
Cp4.1LG03g04450Cucumber (Gy14) v1cgycpeB0550
Cp4.1LG03g04450Cucurbita maxima (Rimu)cmacpeB404
Cp4.1LG03g04450Cucurbita maxima (Rimu)cmacpeB494
Cp4.1LG03g04450Cucurbita maxima (Rimu)cmacpeB927
Cp4.1LG03g04450Cucurbita moschata (Rifu)cmocpeB367
Cp4.1LG03g04450Cucurbita moschata (Rifu)cmocpeB453
Cp4.1LG03g04450Cucurbita moschata (Rifu)cmocpeB861
Cp4.1LG03g04450Wild cucumber (PI 183967)cpecpiB601
Cp4.1LG03g04450Wild cucumber (PI 183967)cpecpiB637
Cp4.1LG03g04450Cucumber (Chinese Long) v2cpecuB599
Cp4.1LG03g04450Cucumber (Chinese Long) v2cpecuB633
Cp4.1LG03g04450Bottle gourd (USVL1VR-Ls)cpelsiB494
Cp4.1LG03g04450Bottle gourd (USVL1VR-Ls)cpelsiB500
Cp4.1LG03g04450Melon (DHL92) v3.5.1cpemeB559
Cp4.1LG03g04450Melon (DHL92) v3.5.1cpemeB566
Cp4.1LG03g04450Cucumber (Gy14) v2cgybcpeB396
Cp4.1LG03g04450Cucumber (Gy14) v2cgybcpeB957
Cp4.1LG03g04450Melon (DHL92) v3.6.1cpemedB665
Cp4.1LG03g04450Melon (DHL92) v3.6.1cpemedB673
Cp4.1LG03g04450Silver-seed gourdcarcpeB0634
Cp4.1LG03g04450Silver-seed gourdcarcpeB1073
Cp4.1LG03g04450Silver-seed gourdcarcpeB1147
Cp4.1LG03g04450Cucumber (Chinese Long) v3cpecucB0789