Cp4.1LG03g02010 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG03g02010
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionUnknown protein
LocationCp4.1LG03 : 776489 .. 777353 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GCAGCAGCGAAGAACGGAAGCTTCATATCTCGATCCGATCGCCGTCTTCACTGCTCTGAAACAACATTTTTGTCACGCGATAGGCGAAAGCTTTTAATCCCTTGTCTGCCTCCAGAAAGGAGCCTACCAATTGTAGCCATCGCTAAAGAGAGAAAGGGATGTACCTCTGCTTCTGTAAGGAGAGTCCGAAACGACCGATTATTCTTTGTGAATCGGGGACGAAAACTCTGGAAGGTAATCACAGTTCTCGATTATCGGTTTTTCAACGATTTTTATGCACAAATTTCAGAAGAACATAGCTTCGTATGCTAAAATAAGATAGTGAATGAGAAGAGGACGCTCTGAAGTCTGAATCAGGAGATGAACTGACCGGTAAATTGAATGAAATTGCGTTGCGATGCTTTCGATTTAGGGTTTGCAGAATGAATAGTTGAGTCAATACTGACTGACAGTTGCTAATAATTGATGGATGGATTTGTATTTTGACGATTGGACTTTTCATCTTCGTCTTTTTGTTTTCTGACAACACGATAGGAACTTCGCTTGATAAGGAGAAGACGGATCAGAAGGGTGCAGGCGGAGGTGACGGCGGATGCCGGCGAGGCGGGCGGAGATGAGCCTTAACTGCCGTAGGCACAGGCCCTACGATGAAGATCGGCAGAGATCATGAATGCGACTCTCCCGCAATGAGACGAATATTCTTAGCTAAGTATTTCGAACTTATTTTTTGCATTTCGAAACTATATTTTTTAATATTGCCCCCATAGACTAAAATAACAACAATGCATAAACATTAATTTAAAGATTTTTGTTAACTAAATATCTTGATATTTTAACCCAAAAAAAAAAAAAAAAAAAAAAAAAA

mRNA sequence

GCAGCAGCGAAGAACGGAAGCTTCATATCTCGATCCGATCGCCGTCTTCACTGCTCTGAAACAACATTTTTGTCACGCGATAGGCGAAAGCTTTTAATCCCTTGTCTGCCTCCAGAAAGGAGCCTACCAATTGTAGCCATCGCTAAAGAGAGAAAGGGATGTACCTCTGCTTCTGTAAGGAGAGTCCGAAACGACCGATTATTCTTTGTGAATCGGGGACGAAAACTCTGGAAGGAACTTCGCTTGATAAGGAGAAGACGGATCAGAAGGGTGCAGGCGGAGGTGACGGCGGATGCCGGCGAGGCGGGCGGAGATGAGCCTTAACTGCCGTAGGCACAGGCCCTACGATGAAGATCGGCAGAGATCATGAATGCGACTCTCCCGCAATGAGACGAATATTCTTAGCTAAGTATTTCGAACTTATTTTTTGCATTTCGAAACTATATTTTTTAATATTGCCCCCATAGACTAAAATAACAACAATGCATAAACATTAATTTAAAGATTTTTGTTAACTAAATATCTTGATATTTTAACCCAAAAAAAAAAAAAAAAAAAAAAAAAA

Coding sequence (CDS)

GCAGCAGCGAAGAACGGAAGCTTCATATCTCGATCCGATCGCCGTCTTCACTGCTCTGAAACAACATTTTTGTCACGCGATAGGCGAAAGCTTTTAATCCCTTGTCTGCCTCCAGAAAGGAGCCTACCAATTGTAGCCATCGCTAAAGAGAGAAAGGGATGTACCTCTGCTTCTGTAAGGAGAGTCCGAAACGACCGATTATTCTTTGTGAATCGGGGACGAAAACTCTGGAAGGAACTTCGCTTGATAAGGAGAAGACGGATCAGAAGGGTGCAGGCGGAGGTGACGGCGGATGCCGGCGAGGCGGGCGGAGATGAGCCTTAA

Protein sequence

AAAKNGSFISRSDRRLHCSETTFLSRDRRKLLIPCLPPERSLPIVAIAKERKGCTSASVRRVRNDRLFFVNRGRKLWKELRLIRRRRIRRVQAEVTADAGEAGGDEP
Homology
The following BLAST results are available for this feature:
BLAST of Cp4.1LG03g02010 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG03g02010 vs. TrEMBL
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG03g02010 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG03g02010 vs. NCBI nr
Match NameE-valueIdentityDescription
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0015074 DNA integration
biological_process GO:0006278 RNA-dependent DNA biosynthetic process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0003964 RNA-directed DNA polymerase activity
molecular_function GO:0008270 zinc ion binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG03g02010.1Cp4.1LG03g02010.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG03g02010CmaCh14G001870Cucurbita maxima (Rimu)cmacpeB283
Cp4.1LG03g02010CmoCh14G001760Cucurbita moschata (Rifu)cmocpeB245
Cp4.1LG03g02010Carg12590Silver-seed gourdcarcpeB1391
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG03g02010Cucumber (Chinese Long) v3cpecucB0747
Cp4.1LG03g02010Cucumber (Chinese Long) v3cpecucB0770
Cp4.1LG03g02010Wax gourdcpewgoB0750
Cp4.1LG03g02010Wax gourdcpewgoB0807
Cp4.1LG03g02010Wax gourdcpewgoB0810
Cp4.1LG03g02010Cucurbita pepo (Zucchini)cpecpeB092
Cp4.1LG03g02010Cucurbita pepo (Zucchini)cpecpeB219
Cp4.1LG03g02010Cucurbita pepo (Zucchini)cpecpeB303
Cp4.1LG03g02010Cucurbita pepo (Zucchini)cpecpeB487
Cp4.1LG03g02010Cucurbita pepo (Zucchini)cpecpeB395
Cp4.1LG03g02010Cucurbita pepo (Zucchini)cpecpeB416
Cp4.1LG03g02010Cucumber (Gy14) v1cgycpeB0100
Cp4.1LG03g02010Cucumber (Gy14) v1cgycpeB0801
Cp4.1LG03g02010Cucurbita maxima (Rimu)cmacpeB571
Cp4.1LG03g02010Cucurbita maxima (Rimu)cmacpeB830
Cp4.1LG03g02010Cucurbita maxima (Rimu)cmacpeB883
Cp4.1LG03g02010Cucurbita moschata (Rifu)cmocpeB522
Cp4.1LG03g02010Cucurbita moschata (Rifu)cmocpeB588
Cp4.1LG03g02010Cucurbita moschata (Rifu)cmocpeB821
Cp4.1LG03g02010Cucurbita moschata (Rifu)cmocpeB783
Cp4.1LG03g02010Wild cucumber (PI 183967)cpecpiB600
Cp4.1LG03g02010Cucumber (Chinese Long) v2cpecuB598
Cp4.1LG03g02010Bottle gourd (USVL1VR-Ls)cpelsiB487
Cp4.1LG03g02010Bottle gourd (USVL1VR-Ls)cpelsiB491
Cp4.1LG03g02010Bottle gourd (USVL1VR-Ls)cpelsiB503
Cp4.1LG03g02010Watermelon (Charleston Gray)cpewcgB546
Cp4.1LG03g02010Watermelon (Charleston Gray)cpewcgB551
Cp4.1LG03g02010Watermelon (Charleston Gray)cpewcgB553
Cp4.1LG03g02010Melon (DHL92) v3.6.1cpemedB678
Cp4.1LG03g02010Watermelon (97103) v1cpewmB597
Cp4.1LG03g02010Watermelon (97103) v1cpewmB618
Cp4.1LG03g02010Watermelon (97103) v1cpewmB620
Cp4.1LG03g02010Melon (DHL92) v3.5.1cpemeB553
Cp4.1LG03g02010Melon (DHL92) v3.5.1cpemeB571
Cp4.1LG03g02010Melon (DHL92) v3.5.1cpemeB580
Cp4.1LG03g02010Cucumber (Gy14) v2cgybcpeB395
Cp4.1LG03g02010Cucumber (Gy14) v2cgybcpeB555
Cp4.1LG03g02010Cucumber (Gy14) v2cgybcpeB677
Cp4.1LG03g02010Melon (DHL92) v3.6.1cpemedB656
Cp4.1LG03g02010Melon (DHL92) v3.6.1cpemedB687
Cp4.1LG03g02010Silver-seed gourdcarcpeB0230
Cp4.1LG03g02010Silver-seed gourdcarcpeB0777