Cp4.1LG03g01860 (gene) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG03g01860
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	Rna exonuclease 3
Location	Cp4.1LG03 : 856713 .. 857552 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTATCAACAACACAACCACTTCATGTCTTGTTTCAGCCATGGATCGCCTTTGGCACCACCACATCATTCTTTCCTCTTCACATCCTTTCCCTTCCCATCTCCACCCAACTTTTCCTTTCTCAAACTTCCCTTCTTCCCTTTCCTCCGACCGCATCTCCCTCGACGACGACACCTCCCTCCTCTCCCAGGTAACCCTTCTCCCTGTGCTCCATAGGATATCATAACGAATAAGAACGACAACGATTTTGAACTTACGATCTCGTGCGCTCTACTAAAAGTGATTTTGATGTTTGTTTTGTATAGGAAGATGATAGTATCAATGGAGACAGATACAAACAAGATGGAAAGAGAGAGTCAATGGAAGAAAGTGTCAGTGATCCTGAATTTACAAGTGAGTTGAATTATTATTACTATCATACATAAACTTTGAAACCCAATTAATAAAATGTGGAGAATTGTTGTGTGCAGTGAGGAAAAAATTGAACAAATCTATGAGTTGTAAAAGCTTGGGGGAGTTGGAGCTGGAGGAAGTTAAAGGGTTTATGGATTTAGGGTTTGAATTCACGAGAGAAGATTTGAGCCCTCAAATGGTGAAGTTGGTACCTGGTTTGCAAAGGTTTAAAACTCTAATGGACAGACAAAATCTCGAAGACGACGACGACGACAACGACGATAAGAAAAGAGATATAGCAAGACCATATCTTTCAGAGGCATGGACAATAAACCGACCAAATTCCCCTCTTTTAAACCTAATGATGCCAAGAGTTTCTTCAACCACTGACATGAAGAAACACCTAAGATCTTGGGCTAGAACTGTTGCAATTGAAATTCAATAA

mRNA sequence

ATGGCTATCAACAACACAACCACTTCATGTCTTGTTTCAGCCATGGATCGCCTTTGGCACCACCACATCATTCTTTCCTCTTCACATCCTTTCCCTTCCCATCTCCACCCAACTTTTCCTTTCTCAAACTTCCCTTCTTCCCTTTCCTCCGACCGCATCTCCCTCGACGACGACACCTCCCTCCTCTCCCAGGAAGATGATAGTATCAATGGAGACAGATACAAACAAGATGGAAAGAGAGAGTCAATGGAAGAAAGTGTCAGTGATCCTGAATTTACAATGAGGAAAAAATTGAACAAATCTATGAGTTGTAAAAGCTTGGGGGAGTTGGAGCTGGAGGAAGTTAAAGGGTTTATGGATTTAGGGTTTGAATTCACGAGAGAAGATTTGAGCCCTCAAATGGTGAAGTTGGTACCTGGTTTGCAAAGGTTTAAAACTCTAATGGACAGACAAAATCTCGAAGACGACGACGACGACAACGACGATAAGAAAAGAGATATAGCAAGACCATATCTTTCAGAGGCATGGACAATAAACCGACCAAATTCCCCTCTTTTAAACCTAATGATGCCAAGAGTTTCTTCAACCACTGACATGAAGAAACACCTAAGATCTTGGGCTAGAACTGTTGCAATTGAAATTCAATAA

Coding sequence (CDS)

ATGGCTATCAACAACACAACCACTTCATGTCTTGTTTCAGCCATGGATCGCCTTTGGCACCACCACATCATTCTTTCCTCTTCACATCCTTTCCCTTCCCATCTCCACCCAACTTTTCCTTTCTCAAACTTCCCTTCTTCCCTTTCCTCCGACCGCATCTCCCTCGACGACGACACCTCCCTCCTCTCCCAGGAAGATGATAGTATCAATGGAGACAGATACAAACAAGATGGAAAGAGAGAGTCAATGGAAGAAAGTGTCAGTGATCCTGAATTTACAATGAGGAAAAAATTGAACAAATCTATGAGTTGTAAAAGCTTGGGGGAGTTGGAGCTGGAGGAAGTTAAAGGGTTTATGGATTTAGGGTTTGAATTCACGAGAGAAGATTTGAGCCCTCAAATGGTGAAGTTGGTACCTGGTTTGCAAAGGTTTAAAACTCTAATGGACAGACAAAATCTCGAAGACGACGACGACGACAACGACGATAAGAAAAGAGATATAGCAAGACCATATCTTTCAGAGGCATGGACAATAAACCGACCAAATTCCCCTCTTTTAAACCTAATGATGCCAAGAGTTTCTTCAACCACTGACATGAAGAAACACCTAAGATCTTGGGCTAGAACTGTTGCAATTGAAATTCAATAA

Protein sequence

MAINNTTTSCLVSAMDRLWHHHIILSSSHPFPSHLHPTFPFSNFPSSLSSDRISLDDDTSLLSQEDDSINGDRYKQDGKRESMEESVSDPEFTMRKKLNKSMSCKSLGELELEEVKGFMDLGFEFTREDLSPQMVKLVPGLQRFKTLMDRQNLEDDDDDNDDKKRDIARPYLSEAWTINRPNSPLLNLMMPRVSSTTDMKKHLRSWARTVAIEIQ

Homology

[Close]

BLAST of Cp4.1LG03g01860 vs. TrEMBL
Match: A0A0B0NY22_GOSAR (Rna exonuclease 3 OS=Gossypium arboreum GN=F383_24768 PE=4 SV=1)

HSP 1 Score: 157.1 bits (396), Expect = 2.3e-35
Identity = 102/237 (43.04%), Postives = 134/237 (56.54%), Query Frame = 1


Query: 5   NTTTSCLVSAMDRLWHHHIILSSSHPFPSHLHPTFPFS-------NFPSSLSSDRISLDD 64
           N  + CLV AMDRLW   IIL     FP    P FP         +  +S SS  +SL  
Sbjct: 61  NNLSFCLVGAMDRLWFQQIIL-----FPDPFSPYFPLEPKQPLSESTTTSSSSSSLSLSS 120

Query: 65  --DTSLLSQEDDSINGDRYKQDGKRESMEESVSDPEFTMRK-------KLNKSMSCKSLG 124
             D  + + +D      + K+  +R ++  S S  + T +        KL KS SC+SL 
Sbjct: 121 VADQEIPALDDPKKEEKQLKKRSRRGNLSRSHSPSQSTHKHQRINHQCKLQKSTSCRSLK 180

Query: 125 ELELEEVKGFMDLGFEFTREDLSPQMVKLVPGLQRF----------KTLMDRQNLEDDDD 184
           +LELEEVKGFMDLGF FT+E L+ +M+ ++PGL R           +  +D   L  DDD
Sbjct: 181 DLELEEVKGFMDLGFVFTKEHLNARMIGVIPGLLRLGFSRTKRIHNEVNVDADQLSKDDD 240

Query: 185 DNDDKKRDIARPYLSEAWTINRPNSPLLNLMMPRVSSTTDMKKHLRSWARTVAIEIQ 216
              ++KR + RPYLSEAW I RP+SPLLNL +PRVS+  DMKKHL+ WARTVA  +Q
Sbjct: 241 IEQEEKRGVIRPYLSEAWLIKRPDSPLLNLRVPRVSAAADMKKHLKFWARTVAYVVQ 292

[Close]

BLAST of Cp4.1LG03g01860 vs. TrEMBL
Match: A0A0D2SH47_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_009G419000 PE=4 SV=1)

HSP 1 Score: 154.8 bits (390), Expect = 1.2e-34
Identity = 103/233 (44.21%), Postives = 135/233 (57.94%), Query Frame = 1


Query: 5   NTTTSCLVSAMDRLWHHHIILSSSHPFPSH--LHPTFPFS-NFPSSLSSDRISLDD--DT 64
           N  + CLV AMDRLW   IIL    PF  +  L P  P S +  +S SS  +SL    D 
Sbjct: 12  NNLSLCLVGAMDRLWFQQIILVPD-PFSPYFPLEPKQPLSESTTTSSSSSSLSLSSVADQ 71

Query: 65  SLLSQEDDSINGDRYKQDGKRESMEESVSDPEFTMRK-------KLNKSMSCKSLGELEL 124
              + +D      + K+  +R ++  S S  + T +        KL KS SC+SL +LEL
Sbjct: 72  EKPALDDPKKEEKQLKKRSRRGNLSRSHSPSQSTHKHQRINHQCKLQKSTSCRSLKDLEL 131

Query: 125 EEVKGFMDLGFEFTREDLSPQMVKLVPGLQRF----------KTLMDRQNLEDDDDDNDD 184
           EEVKGFMDLGF FT+E L+ +M+ ++PGL R           +  +D   L  DDD   +
Sbjct: 132 EEVKGFMDLGFVFTKEHLNARMISVIPGLLRLGFSRTKRIHNEVNVDADQLSKDDDIEQE 191

Query: 185 KKRDIARPYLSEAWTINRPNSPLLNLMMPRVSSTTDMKKHLRSWARTVAIEIQ 216
           +KR + RPYLSEAW I RP+SPLLNL +PRVS+  DMKKHL+ WARTVA  +Q
Sbjct: 192 EKRGVIRPYLSEAWLIKRPDSPLLNLRVPRVSAAADMKKHLKFWARTVAYVVQ 243

[Close]

BLAST of Cp4.1LG03g01860 vs. TrEMBL
Match: M1AP82_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400010464 PE=4 SV=1)

HSP 1 Score: 152.1 bits (383), Expect = 7.5e-34
Identity = 92/215 (42.79%), Postives = 138/215 (64.19%), Query Frame = 1


Query: 11  LVSAMDRLWHHHIILSSSHP---FPSHLHPTFPFSNFPSSLSSDRISLDDDTSLLSQEDD 70
           L+  MD+LW H IIL S  P   FP +L    P  +  +S+ S+ I L D   +  +E+D
Sbjct: 9   LLGIMDQLWFHQIILFSKPPSISFPKNLENPLPIQDSLTSVESEIILLQD---VCEKEED 68

Query: 71  SINGDRYKQDGKRESMEESVSDPEFTMRKKLNKSMS-CKSLGELELEEVKGFMDLGFEFT 130
           +      +++    +M  S+S  +++  + L K++S  KSLG+LELEE++GFMDLGF F 
Sbjct: 69  N------EKERPTRNMSHSLSPKKYSRNRVLEKTLSNYKSLGDLELEELRGFMDLGFIFR 128

Query: 131 REDLSPQMVKLVPGLQRFKTLM---DRQNLEDDDD-------DNDDKKRDIARPYLSEAW 190
           +E +S +M+ ++PGLQR +  +   + +N E+ +        + +D KR+IARPYLSEAW
Sbjct: 129 KEHISKRMINVIPGLQRLEIEISEDEEKNCENSNSKAIVVEGEEEDDKREIARPYLSEAW 188

Query: 191 TINRPNSPLLNLMMPRVSSTTDMKKHLRSWARTVA 212
            I RPNSPLLN+ +PR+S+ +DMKKHLR WA+TVA
Sbjct: 189 LIKRPNSPLLNMRIPRISAASDMKKHLRYWAKTVA 214

[Close]

BLAST of Cp4.1LG03g01860 vs. TrEMBL
Match: A0A0B2PJB1_GLYSO (Uncharacterized protein OS=Glycine soja GN=glysoja_016585 PE=4 SV=1)

HSP 1 Score: 151.8 bits (382), Expect = 9.8e-34
Identity = 101/255 (39.61%), Postives = 135/255 (52.94%), Query Frame = 1


Query: 5   NTTTSCLVSAMDRLWHHHIILSS---------------------------------SHPF 64
           N    C++  MDRLW HH IL S                                 S P 
Sbjct: 3   NKNFLCIIEEMDRLWFHHAILFSEPTASFLSLPSPPDEEKPIPTSESVSCSSSILSSPPP 62

Query: 65  PSHLHPTFPFSNFPSSLSSDRISLDDDTSLLSQEDDSING-DRYKQDGKRESMEESVSDP 124
           P     T    +    LSS+ IS+      ++ E+++  G  R  Q   R     S    
Sbjct: 63  PDEETSTDESPSSEKQLSSESISVPLQDGSINNEEETKEGLTRMNQSDNRTRSHSSSPST 122

Query: 125 EFTMRK-----------KLNKSMSCKSLGELELEEVKGFMDLGFEFTREDLSPQMVKLVP 184
           +   RK           KL KS+SC++LGELEL+EVKGFMDLGF F +E LSP+M+ +VP
Sbjct: 123 QNRHRKLRKPATTTCARKLQKSISCRTLGELELDEVKGFMDLGFTFKKEYLSPRMMSVVP 182

Query: 185 GLQRFKTLMDRQNLEDDDDDNDDKKRDIARPYLSEAWTINRPNSPLLNLMMPRVSSTTDM 215
           GLQR   +  R+ +E +  + +++KRDI RPYLSEAW I RP+SPLLNL +P+  S+++M
Sbjct: 183 GLQRLGVVDARETVEGNHIEAEEQKRDIMRPYLSEAWLIKRPDSPLLNLKIPKCCSSSNM 242

[Close]

BLAST of Cp4.1LG03g01860 vs. TrEMBL
Match: A0A0R0KW62_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_03G179100 PE=4 SV=1)

HSP 1 Score: 151.8 bits (382), Expect = 9.8e-34
Identity = 101/255 (39.61%), Postives = 135/255 (52.94%), Query Frame = 1


Query: 5   NTTTSCLVSAMDRLWHHHIILSS---------------------------------SHPF 64
           N    C++  MDRLW HH IL S                                 S P 
Sbjct: 3   NKNFLCIIEEMDRLWFHHAILFSEPTASFLSLPSPPDEEKPIPTSESVSCSSSILSSPPP 62

Query: 65  PSHLHPTFPFSNFPSSLSSDRISLDDDTSLLSQEDDSING-DRYKQDGKRESMEESVSDP 124
           P     T    +    LSS+ IS+      ++ E+++  G  R  Q   R     S    
Sbjct: 63  PDEETSTDESPSSEKQLSSESISVPLQDGSINNEEETKEGLTRMNQSDNRTRSHSSSPST 122

Query: 125 EFTMRK-----------KLNKSMSCKSLGELELEEVKGFMDLGFEFTREDLSPQMVKLVP 184
           +   RK           KL KS+SC++LGELEL+EVKGFMDLGF F +E LSP+M+ +VP
Sbjct: 123 QNRHRKLRKPATTTCARKLQKSISCRTLGELELDEVKGFMDLGFTFKKEYLSPRMMSVVP 182

Query: 185 GLQRFKTLMDRQNLEDDDDDNDDKKRDIARPYLSEAWTINRPNSPLLNLMMPRVSSTTDM 215
           GLQR   +  R+ +E +  + +++KRDI RPYLSEAW I RP+SPLLNL +P+  S+++M
Sbjct: 183 GLQRLGVVDARETVEGNHIEAEEQKRDIMRPYLSEAWLIKRPDSPLLNLKIPKCCSSSNM 242

[Close]

BLAST of Cp4.1LG03g01860 vs. TAIR10
Match: AT2G42760.1 (AT2G42760.1 unknown protein)

HSP 1 Score: 74.7 bits (182), Expect = 7.7e-14
Identity = 54/147 (36.73%), Postives = 79/147 (53.74%), Query Frame = 1


Query: 84  EESVSDPEFTMRKKLNKS----MSCKSLGELELEEVKGFMDLGFEFTRED-LSPQMVKLV 143
           E  +S+ E   +KK  KS       KS+ +LE EE+KGFMDLGF F+ +D     +V ++
Sbjct: 120 ERLLSEKEEQRKKKKKKSNVRTRKGKSMSDLEYEELKGFMDLGFVFSEDDHKDSDLVSIL 179

Query: 144 PGLQRFKTLMDRQNLEDDDDDNDDK--KRDIARPYLSEAWTI------NRPNSPLL--NL 203
           PGLQR     D    E+++++ +DK      ARPYLSEAW         +  +P +   +
Sbjct: 180 PGLQRLVKKDDGVTKEEEEEEEEDKIGGNRAARPYLSEAWDHCGGRKGKKQITPEIKWRV 239

Query: 204 MMPRVSSTTDMKKHLRSWARTVAIEIQ 216
             P  +S  D+K +LR WA  VA  I+
Sbjct: 240 PAPAAASEVDLKDNLRLWAHAVASTIR 266

[Close]

BLAST of Cp4.1LG03g01860 vs. NCBI nr
Match: gi|659084028|ref|XP_008442668.1| (PREDICTED: late secretory pathway protein AVL9-like [Cucumis melo])

HSP 1 Score: 255.8 bits (652), Expect = 6.9e-65
Identity = 154/249 (61.85%), Postives = 180/249 (72.29%), Query Frame = 1


Query: 1   MAINNTTTSCLVSAMDRLWHHHIILSS----SHPFPSHLHPT--FPFSNF-PSS------ 60
           MA+N   T CLVSAMDRLW+H IIL S    SH FP+ L+ T  FPF+NF PSS      
Sbjct: 1   MAMNTNNTLCLVSAMDRLWYHQIILCSDPFTSH-FPNFLNSTSSFPFTNFVPSSPLSPLM 60

Query: 61  ------LSSDRISLDDDTSLLSQEDDSINGDRYKQDGKRESMEE-SVSDPEFTMRKKLNK 120
                 + S   S  D+ SL+SQED +   D+ KQD KRES E+ S+++ +F++ +KLNK
Sbjct: 61  DQTIDLVPSSSSSSSDNISLVSQEDYNNEEDKDKQDAKRESSEDQSLNNLKFSVGRKLNK 120

Query: 121 SMSCKSLGELELEEVKGFMDLGFEFTREDLSPQMVKLVPGLQRFKTLMDRQNLE------ 180
           S SCKSLGELELEEVKGFMDLGFEF RE LSPQMVKLVPGLQR +T  ++QNLE      
Sbjct: 121 STSCKSLGELELEEVKGFMDLGFEFKRESLSPQMVKLVPGLQRLRTQTNKQNLEEDDDGD 180

Query: 181 --------DDDDDNDDKKRDIARPYLSEAWTINRPNSPLLNLMMPRVSSTTDMKKHLRSW 216
                   DDDDD+DDKKR+IARPYLSEAW I RPNSPLLNL MP+VSST+DMKKHLRSW
Sbjct: 181 GDDHQENDDDDDDDDDKKREIARPYLSEAWIIRRPNSPLLNLRMPKVSSTSDMKKHLRSW 240

[Close]

BLAST of Cp4.1LG03g01860 vs. NCBI nr
Match: gi|778730878|ref|XP_004137815.2| (PREDICTED: uncharacterized protein LOC101215662 [Cucumis sativus])

HSP 1 Score: 250.8 bits (639), Expect = 2.2e-63
Identity = 152/247 (61.54%), Postives = 179/247 (72.47%), Query Frame = 1


Query: 1   MAINNTTTSCLVSAMDRLWHHHIILSSSHP-----FPSHLHPT--FPFSNF-PSS----- 60
           MA+N   T CLVSAMDRLW+H IIL SS P     FP+ L+ T  FPF+NF PSS     
Sbjct: 1   MAMNTNNTLCLVSAMDRLWYHQIILCSSDPLFTSHFPNLLNSTSSFPFTNFLPSSPLSPL 60

Query: 61  -----LSSDRISLDDDTSLLSQEDDSINGDRYKQDGKRE-SMEESVSDPEFTMRKKLNKS 120
                L S   S  D+ SL+SQE+ S   D+ KQD KRE S ++S++  +F++ +KLNKS
Sbjct: 61  VDQTILPSSSSSSSDNISLVSQENYSNEEDKNKQDAKRELSEDQSLNGLKFSVGRKLNKS 120

Query: 121 MSCKSLGELELEEVKGFMDLGFEFTREDLSPQMVKLVPGLQRFKTLMDRQNLEDD----- 180
            SCKSLGELELEEVKGFMDLGFEF RE LSPQMVKLVPGLQR +T +++QNLEDD     
Sbjct: 121 TSCKSLGELELEEVKGFMDLGFEFKRESLSPQMVKLVPGLQRLRTQINKQNLEDDEDGDG 180

Query: 181 ------DDDNDD--KKRDIARPYLSEAWTINRPNSPLLNLMMPRVSSTTDMKKHLRSWAR 216
                 DDD+DD  KKR+IARPYLSEAW I RPNSPLL+L MP+VSST+DMKKHLRSWA+
Sbjct: 181 DHDKENDDDDDDKNKKREIARPYLSEAWIIRRPNSPLLDLRMPKVSSTSDMKKHLRSWAK 240

[Close]

BLAST of Cp4.1LG03g01860 vs. NCBI nr
Match: gi|728839930|gb|KHG19373.1| (rna exonuclease 3 [Gossypium arboreum])

HSP 1 Score: 157.1 bits (396), Expect = 3.3e-35
Identity = 102/237 (43.04%), Postives = 134/237 (56.54%), Query Frame = 1


Query: 5   NTTTSCLVSAMDRLWHHHIILSSSHPFPSHLHPTFPFS-------NFPSSLSSDRISLDD 64
           N  + CLV AMDRLW   IIL     FP    P FP         +  +S SS  +SL  
Sbjct: 61  NNLSFCLVGAMDRLWFQQIIL-----FPDPFSPYFPLEPKQPLSESTTTSSSSSSLSLSS 120

Query: 65  --DTSLLSQEDDSINGDRYKQDGKRESMEESVSDPEFTMRK-------KLNKSMSCKSLG 124
             D  + + +D      + K+  +R ++  S S  + T +        KL KS SC+SL 
Sbjct: 121 VADQEIPALDDPKKEEKQLKKRSRRGNLSRSHSPSQSTHKHQRINHQCKLQKSTSCRSLK 180

Query: 125 ELELEEVKGFMDLGFEFTREDLSPQMVKLVPGLQRF----------KTLMDRQNLEDDDD 184
           +LELEEVKGFMDLGF FT+E L+ +M+ ++PGL R           +  +D   L  DDD
Sbjct: 181 DLELEEVKGFMDLGFVFTKEHLNARMIGVIPGLLRLGFSRTKRIHNEVNVDADQLSKDDD 240

Query: 185 DNDDKKRDIARPYLSEAWTINRPNSPLLNLMMPRVSSTTDMKKHLRSWARTVAIEIQ 216
              ++KR + RPYLSEAW I RP+SPLLNL +PRVS+  DMKKHL+ WARTVA  +Q
Sbjct: 241 IEQEEKRGVIRPYLSEAWLIKRPDSPLLNLRVPRVSAAADMKKHLKFWARTVAYVVQ 292

[Close]

BLAST of Cp4.1LG03g01860 vs. NCBI nr
Match: gi|823221291|ref|XP_012443336.1| (PREDICTED: uncharacterized protein LOC105768128 [Gossypium raimondii])

HSP 1 Score: 154.8 bits (390), Expect = 1.7e-34
Identity = 103/233 (44.21%), Postives = 135/233 (57.94%), Query Frame = 1


Query: 5   NTTTSCLVSAMDRLWHHHIILSSSHPFPSH--LHPTFPFS-NFPSSLSSDRISLDD--DT 64
           N  + CLV AMDRLW   IIL    PF  +  L P  P S +  +S SS  +SL    D 
Sbjct: 12  NNLSLCLVGAMDRLWFQQIILVPD-PFSPYFPLEPKQPLSESTTTSSSSSSLSLSSVADQ 71

Query: 65  SLLSQEDDSINGDRYKQDGKRESMEESVSDPEFTMRK-------KLNKSMSCKSLGELEL 124
              + +D      + K+  +R ++  S S  + T +        KL KS SC+SL +LEL
Sbjct: 72  EKPALDDPKKEEKQLKKRSRRGNLSRSHSPSQSTHKHQRINHQCKLQKSTSCRSLKDLEL 131

Query: 125 EEVKGFMDLGFEFTREDLSPQMVKLVPGLQRF----------KTLMDRQNLEDDDDDNDD 184
           EEVKGFMDLGF FT+E L+ +M+ ++PGL R           +  +D   L  DDD   +
Sbjct: 132 EEVKGFMDLGFVFTKEHLNARMISVIPGLLRLGFSRTKRIHNEVNVDADQLSKDDDIEQE 191

Query: 185 KKRDIARPYLSEAWTINRPNSPLLNLMMPRVSSTTDMKKHLRSWARTVAIEIQ 216
           +KR + RPYLSEAW I RP+SPLLNL +PRVS+  DMKKHL+ WARTVA  +Q
Sbjct: 192 EKRGVIRPYLSEAWLIKRPDSPLLNLRVPRVSAAADMKKHLKFWARTVAYVVQ 243

[Close]

BLAST of Cp4.1LG03g01860 vs. NCBI nr
Match: gi|971536307|ref|XP_015166109.1| (PREDICTED: uncharacterized protein LOC107061418 [Solanum tuberosum])

HSP 1 Score: 152.1 bits (383), Expect = 1.1e-33
Identity = 92/215 (42.79%), Postives = 138/215 (64.19%), Query Frame = 1


Query: 11  LVSAMDRLWHHHIILSSSHP---FPSHLHPTFPFSNFPSSLSSDRISLDDDTSLLSQEDD 70
           L+  MD+LW H IIL S  P   FP +L    P  +  +S+ S+ I L D   +  +E+D
Sbjct: 9   LLGIMDQLWFHQIILFSKPPSISFPKNLENPLPIQDSLTSVESEIILLQD---VCEKEED 68

Query: 71  SINGDRYKQDGKRESMEESVSDPEFTMRKKLNKSMS-CKSLGELELEEVKGFMDLGFEFT 130
           +      +++    +M  S+S  +++  + L K++S  KSLG+LELEE++GFMDLGF F 
Sbjct: 69  N------EKERPTRNMSHSLSPKKYSRNRVLEKTLSNYKSLGDLELEELRGFMDLGFIFR 128

Query: 131 REDLSPQMVKLVPGLQRFKTLM---DRQNLEDDDD-------DNDDKKRDIARPYLSEAW 190
           +E +S +M+ ++PGLQR +  +   + +N E+ +        + +D KR+IARPYLSEAW
Sbjct: 129 KEHISKRMINVIPGLQRLEIEISEDEEKNCENSNSKAIVVEGEEEDDKREIARPYLSEAW 188

Query: 191 TINRPNSPLLNLMMPRVSSTTDMKKHLRSWARTVA 212
            I RPNSPLLN+ +PR+S+ +DMKKHLR WA+TVA
Sbjct: 189 LIKRPNSPLLNMRIPRISAASDMKKHLRYWAKTVA 214

The following BLAST results are available for this feature:

BLAST of Cp4.1LG03g01860 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG03g01860 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0B0NY22_GOSAR	2.3e-35	43.04	Rna exonuclease 3 OS=Gossypium arboreum GN=F383_24768 PE=4 SV=1	[more]
A0A0D2SH47_GOSRA	1.2e-34	44.21	Uncharacterized protein OS=Gossypium raimondii GN=B456_009G419000 PE=4 SV=1	[more]
M1AP82_SOLTU	7.5e-34	42.79	Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400010464 PE=4 SV=1	[more]
A0A0B2PJB1_GLYSO	9.8e-34	39.61	Uncharacterized protein OS=Glycine soja GN=glysoja_016585 PE=4 SV=1	[more]
A0A0R0KW62_SOYBN	9.8e-34	39.61	Uncharacterized protein OS=Glycine max GN=GLYMA_03G179100 PE=4 SV=1	[more]

BLAST of Cp4.1LG03g01860 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G42760.1	7.7e-14	36.73	unknown protein	[more]

BLAST of Cp4.1LG03g01860 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659084028\|ref\|XP_008442668.1\|	6.9e-65	61.85	PREDICTED: late secretory pathway protein AVL9-like [Cucumis melo]	[more]
gi\|778730878\|ref\|XP_004137815.2\|	2.2e-63	61.54	PREDICTED: uncharacterized protein LOC101215662 [Cucumis sativus]	[more]
gi\|728839930\|gb\|KHG19373.1\|	3.3e-35	43.04	rna exonuclease 3 [Gossypium arboreum]	[more]
gi\|823221291\|ref\|XP_012443336.1\|	1.7e-34	44.21	PREDICTED: uncharacterized protein LOC105768128 [Gossypium raimondii]	[more]
gi\|971536307\|ref\|XP_015166109.1\|	1.1e-33	42.79	PREDICTED: uncharacterized protein LOC107061418 [Solanum tuberosum]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG03g01860.1	Cp4.1LG03g01860.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cp4.1LG03g01860	Cucsa.307010	Cucumber (Gy14) v1	cgycpeB0801
Cp4.1LG03g01860	CmaCh14G002020	Cucurbita maxima (Rimu)	cmacpeB283
Cp4.1LG03g01860	CmoCh14G001940	Cucurbita moschata (Rifu)	cmocpeB245
Cp4.1LG03g01860	MELO3C009330	Melon (DHL92) v3.5.1	cpemeB571
Cp4.1LG03g01860	ClCG10G020410	Watermelon (Charleston Gray)	cpewcgB546
Cp4.1LG03g01860	CSPI03G33100	Wild cucumber (PI 183967)	cpecpiB600
Cp4.1LG03g01860	Lsi03G020370	Bottle gourd (USVL1VR-Ls)	cpelsiB503
Cp4.1LG03g01860	MELO3C009330.2	Melon (DHL92) v3.6.1	cpemedB678
Cp4.1LG03g01860	CsaV3_3G035700	Cucumber (Chinese Long) v3	cpecucB0747
Cp4.1LG03g01860	CsGy3G030830	Cucumber (Gy14) v2	cgybcpeB395

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cp4.1LG03g01860	Wax gourd	cpewgoB0750
Cp4.1LG03g01860	Wax gourd	cpewgoB0810
Cp4.1LG03g01860	Cucurbita pepo (Zucchini)	cpecpeB092
Cp4.1LG03g01860	Cucurbita pepo (Zucchini)	cpecpeB303
Cp4.1LG03g01860	Cucurbita pepo (Zucchini)	cpecpeB487
Cp4.1LG03g01860	Cucurbita pepo (Zucchini)	cpecpeB416
Cp4.1LG03g01860	Cucumber (Gy14) v1	cgycpeB0318
Cp4.1LG03g01860	Cucurbita maxima (Rimu)	cmacpeB681
Cp4.1LG03g01860	Cucurbita maxima (Rimu)	cmacpeB830
Cp4.1LG03g01860	Cucurbita maxima (Rimu)	cmacpeB883
Cp4.1LG03g01860	Cucurbita moschata (Rifu)	cmocpeB522
Cp4.1LG03g01860	Cucurbita moschata (Rifu)	cmocpeB588
Cp4.1LG03g01860	Cucurbita moschata (Rifu)	cmocpeB635
Cp4.1LG03g01860	Cucurbita moschata (Rifu)	cmocpeB821
Cp4.1LG03g01860	Cucurbita moschata (Rifu)	cmocpeB783
Cp4.1LG03g01860	Wild cucumber (PI 183967)	cpecpiB627
Cp4.1LG03g01860	Cucumber (Chinese Long) v2	cpecuB598
Cp4.1LG03g01860	Cucumber (Chinese Long) v2	cpecuB624
Cp4.1LG03g01860	Bottle gourd (USVL1VR-Ls)	cpelsiB487
Cp4.1LG03g01860	Bottle gourd (USVL1VR-Ls)	cpelsiB491
Cp4.1LG03g01860	Watermelon (Charleston Gray)	cpewcgB551
Cp4.1LG03g01860	Watermelon (Charleston Gray)	cpewcgB553
Cp4.1LG03g01860	Watermelon (97103) v1	cpewmB597
Cp4.1LG03g01860	Watermelon (97103) v1	cpewmB618
Cp4.1LG03g01860	Watermelon (97103) v1	cpewmB620
Cp4.1LG03g01860	Melon (DHL92) v3.5.1	cpemeB553
Cp4.1LG03g01860	Melon (DHL92) v3.5.1	cpemeB580
Cp4.1LG03g01860	Cucumber (Gy14) v2	cgybcpeB826
Cp4.1LG03g01860	Melon (DHL92) v3.6.1	cpemedB656
Cp4.1LG03g01860	Melon (DHL92) v3.6.1	cpemedB687
Cp4.1LG03g01860	Silver-seed gourd	carcpeB0230
Cp4.1LG03g01860	Silver-seed gourd	carcpeB0353
Cp4.1LG03g01860	Silver-seed gourd	carcpeB0777
Cp4.1LG03g01860	Cucumber (Chinese Long) v3	cpecucB0778