Cp4.1LG03g01260 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG03g01260
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionUnknown protein
LocationCp4.1LG03 : 1144272 .. 1144493 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGACAGAAGAGTGAAGAAAATGCAGAAGTTTACTGTGCTCACGGCGGAGCTGTCGAGGGAAATGGAGGTTCTGGCGGCGGTTGTACGAAATTTGAGGAGGAACACGACCGTTTTTTCATTTGCCGGCGGCGGTGGTGGAAAATCGTTCAATTACCGGAAGGAAATTTCGTGGCACCGCCGTCGTGTTCAGATCTTGAAATTGTTGACCCCTTGGAACTGA

mRNA sequence

ATGGACAGAAGAGTGAAGAAAATGCAGAAGTTTACTGTGCTCACGGCGGAGCTGTCGAGGGAAATGGAGGTTCTGGCGGCGGTTGTACGAAATTTGAGGAGGAACACGACCGTTTTTTCATTTGCCGGCGGCGGTGGTGGAAAATCGTTCAATTACCGGAAGGAAATTTCGTGGCACCGCCGTCGTGTTCAGATCTTGAAATTGTTGACCCCTTGGAACTGA

Coding sequence (CDS)

ATGGACAGAAGAGTGAAGAAAATGCAGAAGTTTACTGTGCTCACGGCGGAGCTGTCGAGGGAAATGGAGGTTCTGGCGGCGGTTGTACGAAATTTGAGGAGGAACACGACCGTTTTTTCATTTGCCGGCGGCGGTGGTGGAAAATCGTTCAATTACCGGAAGGAAATTTCGTGGCACCGCCGTCGTGTTCAGATCTTGAAATTGTTGACCCCTTGGAACTGA

Protein sequence

MDRRVKKMQKFTVLTAELSREMEVLAAVVRNLRRNTTVFSFAGGGGGKSFNYRKEISWHRRRVQILKLLTPWN
Homology
[Close]
BLAST of Cp4.1LG03g01260 vs. TrEMBL
Match: A0A0A0LB89_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G748280 PE=4 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 5.5e-21
Identity = 52/73 (71.23%), Postives = 62/73 (84.93%), Query Frame = 1 

Query: 1   MDRRVKKMQKFTVLTAELSREMEVLAAVVRNLRRNTTVFSFAGGGGGKSFNYRKEISWHR 60
           MDRRVKKMQ+F VLT EL RE+E+LA V +NL+R TT+FSF+ GG GKSF +RK+ISWHR
Sbjct: 163 MDRRVKKMQRFVVLTVELWREIEILAEVEQNLKRTTTIFSFS-GGAGKSFKFRKKISWHR 222

Query: 61  RRVQILKLLTPWN 74
           RR Q LKL+TPWN
Sbjct: 223 RRAQSLKLMTPWN 234

[Close]
BLAST of Cp4.1LG03g01260 vs. NCBI nr
Match: gi|659085754|ref|XP_008443584.1| (PREDICTED: uncharacterized protein LOC103487141 [Cucumis melo])

HSP 1 Score: 109.0 bits (271), Expect = 3.5e-21
Identity = 53/73 (72.60%), Postives = 62/73 (84.93%), Query Frame = 1 

Query: 1   MDRRVKKMQKFTVLTAELSREMEVLAAVVRNLRRNTTVFSFAGGGGGKSFNYRKEISWHR 60
           MDRR+KKMQ+F VLT EL REME+LA V +NL+R TT+FSF+ GGGGKSF  RK+ISWHR
Sbjct: 163 MDRRMKKMQRFIVLTVELWREMEILAEVEKNLKRTTTIFSFS-GGGGKSFKIRKKISWHR 222

Query: 61  RRVQILKLLTPWN 74
           RR Q LKL+TPWN
Sbjct: 223 RRAQSLKLMTPWN 234

[Close]
BLAST of Cp4.1LG03g01260 vs. NCBI nr
Match: gi|778688835|ref|XP_011652850.1| (PREDICTED: uncharacterized protein LOC105435128 [Cucumis sativus])

HSP 1 Score: 107.8 bits (268), Expect = 7.9e-21
Identity = 52/73 (71.23%), Postives = 62/73 (84.93%), Query Frame = 1 

Query: 1   MDRRVKKMQKFTVLTAELSREMEVLAAVVRNLRRNTTVFSFAGGGGGKSFNYRKEISWHR 60
           MDRRVKKMQ+F VLT EL RE+E+LA V +NL+R TT+FSF+ GG GKSF +RK+ISWHR
Sbjct: 163 MDRRVKKMQRFVVLTVELWREIEILAEVEQNLKRTTTIFSFS-GGAGKSFKFRKKISWHR 222

Query: 61  RRVQILKLLTPWN 74
           RR Q LKL+TPWN
Sbjct: 223 RRAQSLKLMTPWN 234

The following BLAST results are available for this feature:
BLAST of Cp4.1LG03g01260 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG03g01260 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LB89_CUCSA5.5e-2171.23Uncharacterized protein OS=Cucumis sativus GN=Csa_3G748280 PE=4 SV=1[more]
BLAST of Cp4.1LG03g01260 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG03g01260 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659085754|ref|XP_008443584.1|3.5e-2172.60PREDICTED: uncharacterized protein LOC103487141 [Cucumis melo][more]
gi|778688835|ref|XP_011652850.1|7.9e-2171.23PREDICTED: uncharacterized protein LOC105435128 [Cucumis sativus][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG03g01260.1Cp4.1LG03g01260.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableunknownCoilCoilcoord: 15..35
scor

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG03g01260Melon (DHL92) v3.6.1cpemedB702
Cp4.1LG03g01260Silver-seed gourdcarcpeB0230
Cp4.1LG03g01260Silver-seed gourdcarcpeB0339
Cp4.1LG03g01260Silver-seed gourdcarcpeB0353
Cp4.1LG03g01260Silver-seed gourdcarcpeB1137
Cp4.1LG03g01260Silver-seed gourdcarcpeB1279
Cp4.1LG03g01260Cucumber (Chinese Long) v3cpecucB0747
Cp4.1LG03g01260Cucumber (Chinese Long) v3cpecucB0778
Cp4.1LG03g01260Cucumber (Chinese Long) v3cpecucB0782
Cp4.1LG03g01260Wax gourdcpewgoB0750
Cp4.1LG03g01260Wax gourdcpewgoB0805
Cp4.1LG03g01260Wax gourdcpewgoB0808
Cp4.1LG03g01260Wax gourdcpewgoB0811
Cp4.1LG03g01260Cucurbita pepo (Zucchini)cpecpeB092
Cp4.1LG03g01260Cucurbita pepo (Zucchini)cpecpeB303
Cp4.1LG03g01260Cucurbita pepo (Zucchini)cpecpeB487
Cp4.1LG03g01260Cucurbita pepo (Zucchini)cpecpeB416
Cp4.1LG03g01260Cucumber (Gy14) v1cgycpeB0999
Cp4.1LG03g01260Cucurbita maxima (Rimu)cmacpeB283
Cp4.1LG03g01260Cucurbita maxima (Rimu)cmacpeB681
Cp4.1LG03g01260Cucurbita maxima (Rimu)cmacpeB830
Cp4.1LG03g01260Cucurbita maxima (Rimu)cmacpeB883
Cp4.1LG03g01260Cucurbita moschata (Rifu)cmocpeB245
Cp4.1LG03g01260Cucurbita moschata (Rifu)cmocpeB635
Cp4.1LG03g01260Cucurbita moschata (Rifu)cmocpeB821
Cp4.1LG03g01260Cucurbita moschata (Rifu)cmocpeB783
Cp4.1LG03g01260Wild cucumber (PI 183967)cpecpiB600
Cp4.1LG03g01260Wild cucumber (PI 183967)cpecpiB627
Cp4.1LG03g01260Cucumber (Chinese Long) v2cpecuB598
Cp4.1LG03g01260Cucumber (Chinese Long) v2cpecuB624
Cp4.1LG03g01260Bottle gourd (USVL1VR-Ls)cpelsiB487
Cp4.1LG03g01260Bottle gourd (USVL1VR-Ls)cpelsiB491
Cp4.1LG03g01260Bottle gourd (USVL1VR-Ls)cpelsiB503
Cp4.1LG03g01260Watermelon (Charleston Gray)cpewcgB546
Cp4.1LG03g01260Watermelon (Charleston Gray)cpewcgB551
Cp4.1LG03g01260Watermelon (Charleston Gray)cpewcgB553
Cp4.1LG03g01260Melon (DHL92) v3.6.1cpemedB678
Cp4.1LG03g01260Watermelon (97103) v1cpewmB597
Cp4.1LG03g01260Watermelon (97103) v1cpewmB618
Cp4.1LG03g01260Watermelon (97103) v1cpewmB620
Cp4.1LG03g01260Melon (DHL92) v3.5.1cpemeB553
Cp4.1LG03g01260Melon (DHL92) v3.5.1cpemeB571
Cp4.1LG03g01260Melon (DHL92) v3.5.1cpemeB592
Cp4.1LG03g01260Cucumber (Gy14) v2cgybcpeB395
Cp4.1LG03g01260Cucumber (Gy14) v2cgybcpeB826
Cp4.1LG03g01260Cucumber (Gy14) v2cgybcpeB827