Cp4.1LG02g17180 (gene) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG02g17180
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	Transmembrane isoform 1
Location	Cp4.1LG02 : 12429381 .. 12433515 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GGGTGAAAAAAAGCCCTATTTTCCGAAATGGAAACAAAAAAAGATCCATTTGTTTAGAATCTACGGAGTTGCAGAGCCAAAATGCGATCATAATACTCAATCCTTTCTCGATCGTACTCTTATTAATTCTTGTTGTTCCTCAGCCGTCGACGGCGCCGATTCACCGGCGGTCAGCTTCGGATAATGATGTCACCAGGGCCGATGTCTGAGGATCGAGGATCTTCGCCTCGTTTCAGGTTTTTATTTATTTATATTTTTCTCCCCAATTTCTTGTTTCTGTTACATTGCGCATTGTAGTCCCCTGTTTCGTCGTTTAGAGAATTCGGAGGTATAGAAGAAATTGAAGTTTCTGAATCTTAAGGTTACTGCGATGTTCGAAATGGGAAATTTCTGCTTTGGTGGAATTGGGAATAGTCCGTAGTGAGGGACAATACAGCTTAAAATTTTGGATGCCTTAGTTTTCTACTTGATTTTATTACCTGCTCCACAGAACTTGAATGGTTATAATATGGCATGCAGTTCAGGTTTTATCACAATTTATTTGCGGGAAGGGGCTATAATGAATTGGGGAAGTGATGAAATCACTTAAGTTTCTACGTGATGCTTCCAATTTAGTTAATGAGGACAATCAGAGTTTAGTATTTAAGTTCTGGCAATCATTGATGTACAAACTGTTGGCAAAGTAATTCTTATAGTTCTATTGATTCAATAGGATGCTGCTATTTTATGCAATCTTGAAGAAGCTAAGCGGGTTGGTTTATCCACCTCCTAATATGAAATTGTATCCATCTTTGCAGACATACACCGTTGCAGATAATCCACATGGTTGGAAATTTCTTTCGGATATGGTCGATCTATTCCATGTATCGATATTTTTCTCAGACTGGAGCTTCTGTTGTACTTTTTCTGTTTTGTTGTTTGGCCCCAGCAGCCATCATATTCTTGACTTTGCAAAAACCTTGGAAGGGAAAGCCCCTTTCAAATACTCAGGTGAAGCGGAACATTTAGCTGTAAGAGCCAAATGTTTACAACTTCCTCATATTATTTCATCAGTTTCTTATTACATCTAACTTGCTCTTTTAGGTAGTTCCTTCTGTGATAAATGGTGGCATAACAGCCTTGTACTTTATCTTGTGGGGAAAGGGTCTTAAAACCTGTGGACCTCTGAGGTGGGTTACCTTTGATTATGGATACCCCTTGCTCTTTCTTCTTGGCACATACACGAATCATGCATGTATGCACCACGTGAAATCATACACTTCGTGGAAAACATCCAACTAATCAGAGTGTATATATGCATTATCACACTTGTTTTTAAGATAGTTTCTTATATTCCTTGTCTTAATCTTATCGATTGACCAAGAGTTCGCTTCGATTTACAGCGTATGCCTATATTTAGGTGATCATGTTTAATGGAAAACTTAGCCTCATTAGGATTTGAAATGCTAGACCTACAATTTGTGAATAGAATAAGAAAAATTGGATATTCAATACTCGTCTATTTCTTCAAACTTATTGTTTGATTTTTATGATGTTGCTTGGTTTCCGAACCTCTTTGAAAATTCATGCTTTCACCTGGGTTGTAACTGTTAGAAGGTTCAATACTTGTTACAAAAGAAGAGACCTTACCTTATTATTCTTCCGTCTCCTTGGCTTTATAATTTGCAAATGTGGTTTACTAATTCTTTAAATTTACCATCAGATTAAGTTTTTTGGTTGATTGTTAATTTAACAGTTACTATTTCTTTTCTTTTCCTGTTTTTTTAACCACACTTTTATCATTGAAGTTCTATTTTTTAATGTCAAATTTGAACAAACCACTCTGTATATCTACCTGGTACCATGAGTCATTTGGAGCTTATGTAGATAGTGAGTTAGGAACTTATAAAGGGATGCAATGGGAGTATTTATGGAAGTTTTGTTGCTTGGTCATATATATATTTTCTTGCCTTCTTTCTTCGTGGTCCATCTATTTACTGTCTTCTGTTTTCTTAATTTTCTATTCTAGGGCTATACTTGCCGAGTATTCTGGTGCTGTCCTGGGAGTGCTTTCTGCTGTTTTGTACGGTCGGAGAGGCTTTGTTTGGAAAAAGGTTGTGTTTAATATACTTGATTATTCTTGGGCTTCTTTGTATTCATTTAATACTCTGTCGTAGGCTGCATCAAAGCAAGGGCTTCAGTTTAATTTATTTCTAGGATTCTACTCTGATATCGTTAGCTTCTTATTATTATGTCATCCACATAACCAGATTCTCCTTGAAATATTATATCAGGTTGGTGGCCTCATTGCCATGTTGGTATCTTTCTACTTTTTATCACAAGGATGGGCCATGGCCACACATTTTCCCTTTTATATCCTTGAAAGCTCATTTGGAACTGCATTTCATGTATGAAAATAAGAGTTGAGATTGCTATTAGTTGCGACCTTCAGAGGTTTTTTTCTTTGGTTCTTACGTTATTATTATCATTATTTATCTATTATCCCCTTTTCTTTTATCTCTCTGTGTTTTCATTTCCGTATCAAAATTGTTGTAAACTTTAACCTGAGACTACCTTCGAAAGATGGCTCTGACTCTAAGGATCAGACAGAACAGGACCAAACAGAACTAGTGTTGGGTTCGATGGAAATGGCAATTCCCATTTTTGCTGGAATTTTATCAGCTTTGAGAAGGGTCATTGCTCGACGCGTTTCACTTAAGGTTTTGTCTAATATTCAGTTTAATTTGTAATCTTCCTTTTGACATCTAAGTTAGCATTCTGATATGTGATTGTTTTTCAATGCACCCTCAGAACCAACTTAAAAGACGACTTCATGCTATAACAATGGCTTCTGCGACTTGTTTTCTCTTTCCTTTAGCCATGTGGGACATGATTATTGTAAGTTTCAGCAATATTTCATGAATGATCTTTCTAATTCCTGAATTAGCGCTTGATTTTTCTTTATTTTCATAACTTCAGGGATCAACTTTGTCATCTGATACCAGACGAGAGCTTCCTTTCTCCACCTGGGCATTTTTAAGCACTATAATTTTTGGTGTTATTCTGATATTTTACGTTGACAGCATTGCTGAAGAAAGGTAATAATATAAATAGACAGTAATTGGGGATTCAAATGATGCAAATGTTCAGTATTTGTCCACAATTCACCCCCCGCTCCCTTACATTACAGATTATTCATCAGTTTTGCTCATTCGAGGACTCAGAAAATGATAATACTCTTCTTCTTCTTCTTTTTCTTTTCCTTTTTTGTAACGCTCAAGCCCACTACTAGCAGATGTTGTCCTCATTGGGCTTTTCCTTTCAGGCTTACCTTCAAGGTCTTTAAAACGTGTCTGCTAGGGAGAGGTTTCCACACCCTTATAAAGGGTGTTACATTCTCCTCCCCTCCTCCCCGACCGATGTGGGATCTCACACTTTTTTTTTTTTCTTCGCAGATTGCACGTGGTTTTTTCTTCTCCAAGACATTTGGTGGTGGCTGGTGGAAGCATCATTCTTCTGGAGACTGTATACAAGATGGATTTTTCTCTAATCGGCTTTATTATCTGCTGCTCAATTTTGGGTTTTGGTTTGTTCAAGTTTTCATCTATTTTAAATTTGCTACAATTCAAGCCATATGACCGTTGCTTCTTATCCAATCTTCCTATGCTTTTCTTTTGTTCAATTCGATTGACTAATACCAATGTTTGTAGGGATATATGAAGCAACTTCTTTAGACCGCAGCCGAAAAGATTCTTCTCACAATCACGATACATCAAACGGACTGTTGGACCGAGATCAGATGTCACCACTTCCAACTTGATATATGTATGTTCATATCACGCTTAGGTATATTTTGTGTTTCATGTTGTATAACTTAAATTATTGCATCATATTTGAAACTTGAGAAATGATATCTCATTGATCTCAACATCATCACCCCTTAAAACAATTTGGTGTCTGCAGTAATCAGAAGATGGTGGTTCATTGTTACAACTGGAAAATTTTGTCATGCAAATGGACCCATTGGCCTCAAGCAGCCACATTTTTTTGCTGAAAAGTACGTAGCATTGTATCCTTAGCCTCAAATTTATGTGTTTTTATCGCTAATTTGTACTTCAAAATGATCTGATCTGAGAGCAATGATAATTTTCATATG

mRNA sequence

GGGTGAAAAAAAGCCCTATTTTCCGAAATGGAAACAAAAAAAGATCCATTTGTTTAGAATCTACGGAGTTGCAGAGCCAAAATGCGATCATAATACTCAATCCTTTCTCGATCGTACTCTTATTAATTCTTGTTGTTCCTCAGCCGTCGACGGCGCCGATTCACCGGCGGTCAGCTTCGGATAATGATGTCACCAGGGCCGATGTCTGAGGATCGAGGATCTTCGCCTCGTTTCAGGATGCTGCTATTTTATGCAATCTTGAAGAAGCTAAGCGGGTTGGTTTATCCACCTCCTAATATGAAATTGTATCCATCTTTGCAGACATACACCGTTGCAGATAATCCACATGGTTGGAAATTTCTTTCGGATATGGTCGATCTATTCCATGTATCGATATTTTTCTCAGACTGGAGCTTCTGTTGTACTTTTTCTGTTTTGTTGTTTGGCCCCAGCAGCCATCATATTCTTGACTTTGCAAAAACCTTGGAAGGGAAAGCCCCTTTCAAATACTCAGGTGAAGCGGAACATTTAGCTGTAGTTCCTTCTGTGATAAATGGTGGCATAACAGCCTTGTACTTTATCTTGTGGGGAAAGGGTCTTAAAACCTGTGGACCTCTGAGGGCTATACTTGCCGAGTATTCTGGTGCTGTCCTGGGAGTGCTTTCTGCTGTTTTGTACGGTCGGAGAGGCTTTGTTTGGAAAAAGAACCAACTTAAAAGACGACTTCATGCTATAACAATGGCTTCTGCGACTTGTTTTCTCTTTCCTTTAGCCATGTGGGACATGATTATTGGATCAACTTTGTCATCTGATACCAGACGAGAGCTTCCTTTCTCCACCTGGGCATTTTTAAGCACTATAATTTTTGGTGTTATTCTGATATTTTACGTTGACAGCATTGCTGAAGAAAGGTAATAATATAAATAGACAGTAATTGGGGATTCAAATGATGCAAATGTTCAGTATTTGTCCACAATTCACCCCCCGCTCCCTTACATTACAGATTATTCATCAGTTTTGCTCATTCGAGGACTCAGAAAATGATAATACTCTTCTTCTTCTTCTTTTTCTTTTCCTTTTTTGTAACGCTCAAGCCCACTACTAGCAGATGTTGTCCTCATTGGGCTTTTCCTTTCAGGCTTACCTTCAAGGTCTTTAAAACGTGTCTGCTAGGGAGAGGTTTCCACACCCTTATAAAGGGTGTTACATTCTCCTCCCCTCCTCCCCGACCGATGTGGGATCTCACACTTTTTTTTTTTTCTTCGCAGATTGCACGTGGTTTTTTCTTCTCCAAGACATTTGGTGGTGGCTGGTGGAAGCATCATTCTTCTGGAGACTGTATACAAGATGGATTTTTCTCTAATCGGCTTTATTATCTGCTGCTCAATTTTGGGTTTTGGTTTGTTCAAGTTTTCATCTATTTTAAATTTGCTACAATTCAAGCCATATGACCGTTGCTTCTTATCCAATCTTCCTATGCTTTTCTTTTGTTCAATTCGATTGACTAATACCAATGTTTGTAGGGATATATGAAGCAACTTCTTTAGACCGCAGCCGAAAAGATTCTTCTCACAATCACGATACATCAAACGGACTGTTGGACCGAGATCAGATGTCACCACTTCCAACTTGATATATGTATGTTCATATCACGCTTAGTAATCAGAAGATGGTGGTTCATTGTTACAACTGGAAAATTTTGTCATGCAAATGGACCCATTGGCCTCAAGCAGCCACATTTTTTTGCTGAAAAGTACGTAGCATTGTATCCTTAGCCTCAAATTTATGTGTTTTTATCGCTAATTTGTACTTCAAAATGATCTGATCTGAGAGCAATGATAATTTTCATATG

Coding sequence (CDS)

ATGATGTCACCAGGGCCGATGTCTGAGGATCGAGGATCTTCGCCTCGTTTCAGGATGCTGCTATTTTATGCAATCTTGAAGAAGCTAAGCGGGTTGGTTTATCCACCTCCTAATATGAAATTGTATCCATCTTTGCAGACATACACCGTTGCAGATAATCCACATGGTTGGAAATTTCTTTCGGATATGGTCGATCTATTCCATGTATCGATATTTTTCTCAGACTGGAGCTTCTGTTGTACTTTTTCTGTTTTGTTGTTTGGCCCCAGCAGCCATCATATTCTTGACTTTGCAAAAACCTTGGAAGGGAAAGCCCCTTTCAAATACTCAGGTGAAGCGGAACATTTAGCTGTAGTTCCTTCTGTGATAAATGGTGGCATAACAGCCTTGTACTTTATCTTGTGGGGAAAGGGTCTTAAAACCTGTGGACCTCTGAGGGCTATACTTGCCGAGTATTCTGGTGCTGTCCTGGGAGTGCTTTCTGCTGTTTTGTACGGTCGGAGAGGCTTTGTTTGGAAAAAGAACCAACTTAAAAGACGACTTCATGCTATAACAATGGCTTCTGCGACTTGTTTTCTCTTTCCTTTAGCCATGTGGGACATGATTATTGGATCAACTTTGTCATCTGATACCAGACGAGAGCTTCCTTTCTCCACCTGGGCATTTTTAAGCACTATAATTTTTGGTGTTATTCTGATATTTTACGTTGACAGCATTGCTGAAGAAAGGTAA

Protein sequence

MMSPGPMSEDRGSSPRFRMLLFYAILKKLSGLVYPPPNMKLYPSLQTYTVADNPHGWKFLSDMVDLFHVSIFFSDWSFCCTFSVLLFGPSSHHILDFAKTLEGKAPFKYSGEAEHLAVVPSVINGGITALYFILWGKGLKTCGPLRAILAEYSGAVLGVLSAVLYGRRGFVWKKNQLKRRLHAITMASATCFLFPLAMWDMIIGSTLSSDTRRELPFSTWAFLSTIIFGVILIFYVDSIAEER

Homology

[Close]

BLAST of Cp4.1LG02g17180 vs. TrEMBL
Match: V7C451_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_004G065800g PE=4 SV=1)

HSP 1 Score: 149.4 bits (376), Expect = 5.5e-33
Identity = 99/243 (40.74%), Postives = 118/243 (48.56%), Query Frame = 1


Query: 1   MMSPGPMSEDRGSSPRFRMLLFYAILKKLSGLVYPPPNMKLYPSLQTYTVADNPHGWKFL 60
           MMSP  +SEDRG                      PP + +  P    + VA+    W   
Sbjct: 1   MMSPNRVSEDRG---------------------NPPHHFRQTPLQIIHIVANFMRIWSIY 60

Query: 61  SDMVDLFHVSIFFSDWSFCCTFSVLLFGPSSHHILDFAKTLEGKAPFKYSGEAEHLAVVP 120
           S          F    +    F      P+S   L   K  +G+          +  VVP
Sbjct: 61  S------MYRYFVQTGASVVLFLFACLAPASILFLILQKPWKGRP-------LSNTQVVP 120

Query: 121 SVINGGITALYFILWGKGLKTCGPLRAILAEYSGAVLGVLSAVLYGRRGFVWKKNQLKRR 180
           S+INGGITALY +LWGKGLK+CGP RAILAEYSGAVLGVLSAVLYGRR  +WKK      
Sbjct: 121 SIINGGITALYLVLWGKGLKSCGPARAILAEYSGAVLGVLSAVLYGRRAHLWKK------ 180

Query: 181 LHAITMASATCFLFPLAMWDMIIGSTLSSDTRRELPFSTWAFLSTIIFGVILIFYVDSIA 240
                                  GS+  SD  ++LPFS WAF STI+FG I+IFY DSIA
Sbjct: 181 -----------------------GSSSESDNSKKLPFSAWAFFSTILFGNIVIFYADSIA 180

Query: 241 EER 244
           EER
Sbjct: 241 EER 180

[Close]

BLAST of Cp4.1LG02g17180 vs. TrEMBL
Match: A0A067F698_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g018499mg PE=4 SV=1)

HSP 1 Score: 147.9 bits (372), Expect = 1.6e-32
Identity = 110/282 (39.01%), Postives = 137/282 (48.58%), Query Frame = 1


Query: 1   MMSPGPMSEDRGSSPRFRMLLFYAILKKLSGLVYPPPNMKLYPSLQTYTVADNPHGWKFL 60
           MMSP P S+DRGSS                       N +  P    + +A     W   
Sbjct: 1   MMSPRPNSDDRGSS-----------------------NFRHTPLQILHIIASFLRIWSVY 60

Query: 61  SDMVDLFHVSIFFSDWSFCCTFSVLLFGPSSHHILDFAKTLEGKAPFKYSGEAEHLAVVP 120
           S    L    +    + FCC        PSS   L   K  +G+          +  +VP
Sbjct: 61  SMYRYLSQTGVSVILFIFCCLV------PSSILFLLLQKPWKGRPLL-------NTQMVP 120

Query: 121 SVINGGITALYFILWGKGLKTCGPLRAILAEYSGAVLGVLSAVLYGRRGFVWKK----NQ 180
           SVINGGITALYFILWGKGLK+CGP+RA+LAEYSGAVLGVLSAVLYGRRG VWKK      
Sbjct: 121 SVINGGITALYFILWGKGLKSCGPVRALLAEYSGAVLGVLSAVLYGRRGHVWKKVGGLIA 180

Query: 181 LKRRLHAITMASATCFLFP----------------LAMWDMIIG--STLSSDTRR----- 240
           +    + ++   AT    P                L M +M++   + + S  RR     
Sbjct: 181 ILASFYFLSQGWATETSSPFSFKDSLDAELRTEQVLGMKEMVVPLLAGILSALRRVIARR 240

Query: 241 ------------ELPFSTWAFLSTIIFGVILIFYVDSIAEER 244
                       +LPFS WAFLST +FG+ILIFYVD++AEER
Sbjct: 241 VSLKGSKSSSSVDLPFSAWAFLSTTLFGIILIFYVDAMAEER 246

[Close]

BLAST of Cp4.1LG02g17180 vs. TrEMBL
Match: B9S5F2_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1570630 PE=4 SV=1)

HSP 1 Score: 144.1 bits (362), Expect = 2.3e-31
Identity = 80/126 (63.49%), Postives = 86/126 (68.25%), Query Frame = 1


Query: 118 VVPSVINGGITALYFILWGKGLKTCGPLRAILAEYSGAVLGVLSAVLYGRRGFVWKKNQL 177
           VVPS+ING ITALYFILWGKGLK+CGP+RAILAEYSGAVLGVLSA LYGRR  +W+K   
Sbjct: 81  VVPSIINGAITALYFILWGKGLKSCGPVRAILAEYSGAVLGVLSATLYGRRSNLWRK--- 140

Query: 178 KRRLHAITMASATCFLFPLAMWDMIIGSTLSSDTRRELPFSTWAFLSTIIFGVILIFYVD 237
                                     GST  S    ELPFS WAFLSTI+FGVILIFYVD
Sbjct: 141 --------------------------GSTSGSIV--ELPFSAWAFLSTILFGVILIFYVD 175

Query: 238 SIAEER 244
           SIAEER
Sbjct: 201 SIAEER 175

[Close]

BLAST of Cp4.1LG02g17180 vs. TrEMBL
Match: W9SQ14_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_001187 PE=4 SV=1)

HSP 1 Score: 139.0 bits (349), Expect = 7.4e-30
Identity = 79/169 (46.75%), Postives = 98/169 (57.99%), Query Frame = 1


Query: 115 HLAVVPSVINGGITALYFILWGKGLKTCGPLRAILAEYSGAVLGVLSAVLYGRRGFVWKK 174
           ++ VVPS+INGGITALYFILWGKGL++CGPLRAILAEYSGAVLGVLSAVLYGRRG +WKK
Sbjct: 80  NVQVVPSIINGGITALYFILWGKGLRSCGPLRAILAEYSGAVLGVLSAVLYGRRGQIWKK 139

Query: 175 NQ------LKRRLHAITMASATCFLFPLAMWDMIIGSTLS-------------------- 234
           +           +  +T  +       L+    +I   +S                    
Sbjct: 140 DSPADIEVQTEEVLGMTEMAVPILAGVLSALRRVIARRVSLKNQLKRRLHAITIASATCF 199

Query: 235 --------------SDTRRELPFSTWAFLSTIIFGVILIFYVDSIAEER 244
                         S +  ++PFS WAF ST++FGVI IFY+DSIAEER
Sbjct: 200 LFPVAMWDMIIGSPSSSSEKMPFSVWAFSSTVLFGVIFIFYIDSIAEER 248

[Close]

BLAST of Cp4.1LG02g17180 vs. TrEMBL
Match: R0H538_9BRAS (Uncharacterized protein OS=Capsella rubella GN=CARUB_v10007229mg PE=4 SV=1)

HSP 1 Score: 137.1 bits (344), Expect = 2.8e-29
Identity = 94/212 (44.34%), Postives = 108/212 (50.94%), Query Frame = 1


Query: 78  FCCTFSVLLFGPSSHHILDFAKTLEGKAPFKYSGEAEHLAVVPSVINGGITALYFILWGK 137
           FCC        PSS   L   K  +G+A         +  +VPS+ING ITALYFILWGK
Sbjct: 55  FCCLV------PSSIIFLILQKPWKGRA-------LSNQQIVPSLINGVITALYFILWGK 114

Query: 138 GLKTCGPLRAILAEYSGAVLGVLSAVLYGRRGFVWKKNQLKRRLH----------AITMA 197
           GLK+CGPLRAIL+EYSGAVLGVLS VLYGRRG VWKK   K              A+ M 
Sbjct: 115 GLKSCGPLRAILSEYSGAVLGVLSGVLYGRRGHVWKKLPTKESTEIKEEEVQTELALGML 174

Query: 198 SATCFLFP--LAMWDMIIGSTL----------------------------------SSDT 244
                +F   L+    +I   +                                  SS  
Sbjct: 175 GMMIPVFAGILSALRRVIARRVSLKNQQKKRLHAITITSATCFLFPVAMWDFIMGSSSGK 234

[Close]

BLAST of Cp4.1LG02g17180 vs. TAIR10
Match: AT5G38380.1 (AT5G38380.1 FUNCTIONS IN: molecular_function unknown)

HSP 1 Score: 113.2 bits (282), Expect = 2.2e-25
Identity = 60/86 (69.77%), Postives = 68/86 (79.07%), Query Frame = 1


Query: 158 GVLSAVLYGRRGFVWKKNQLKRRLHAITMASATCFLFPLAMWDMIIGSTLSSDTRRELPF 217
           G+LSA+       V  KNQ K+RLHAIT+ SATCFLFP+AMWD+IIGS  SS    ELPF
Sbjct: 195 GILSALRRVIARRVSLKNQQKKRLHAITITSATCFLFPVAMWDLIIGS--SSGKTSELPF 254

Query: 218 STWAFLSTIIFGVILIFYVDSIAEER 244
           S WAFLSTIIFG+ILIFYVD+IAEER
Sbjct: 255 SAWAFLSTIIFGIILIFYVDNIAEER 278

[Close]

BLAST of Cp4.1LG02g17180 vs. NCBI nr
Match: gi|778680686|ref|XP_011651372.1| (PREDICTED: uncharacterized protein LOC101203988 isoform X2 [Cucumis sativus])

HSP 1 Score: 184.1 bits (466), Expect = 2.9e-43
Identity = 90/112 (80.36%), Postives = 96/112 (85.71%), Query Frame = 1


Query: 63  MVDLFHVSIFFSDWSFCCTFSVLLFGPSSHHILDFAKTLEGKAPFKYSGEAEHLAVVPSV 122
           MV+LFHVS+FFSDWSF CTFS+LLFGPS HHI +FAK LEGKA  ++S        VPSV
Sbjct: 1   MVNLFHVSLFFSDWSFSCTFSILLFGPSGHHIFNFAKALEGKASLEHS--------VPSV 60

Query: 123 INGGITALYFILWGKGLKTCGPLRAILAEYSGAVLGVLSAVLYGRRGFVWKK 175
           ING ITALYFILWGKGLK CGPLRAILAEYSGAVLGVLSAVLYGRRGFVWKK
Sbjct: 61  INGAITALYFILWGKGLKACGPLRAILAEYSGAVLGVLSAVLYGRRGFVWKK 104

[Close]

BLAST of Cp4.1LG02g17180 vs. NCBI nr
Match: gi|659123303|ref|XP_008461593.1| (PREDICTED: uncharacterized protein LOC103500159 isoform X2 [Cucumis melo])

HSP 1 Score: 177.6 bits (449), Expect = 2.7e-41
Identity = 87/112 (77.68%), Postives = 94/112 (83.93%), Query Frame = 1


Query: 63  MVDLFHVSIFFSDWSFCCTFSVLLFGPSSHHILDFAKTLEGKAPFKYSGEAEHLAVVPSV 122
           MV+LF+VS+FFSDWSF CTF  LLFGPS HHI +FAK LEGKA  +YS        VPSV
Sbjct: 1   MVNLFNVSLFFSDWSFSCTFPFLLFGPSGHHIFNFAKALEGKASLEYS--------VPSV 60

Query: 123 INGGITALYFILWGKGLKTCGPLRAILAEYSGAVLGVLSAVLYGRRGFVWKK 175
           ING ITALYFILWGKGLK CGPLRA+LAEYSGAVLGVLSAVL+GRRGFVWKK
Sbjct: 61  INGAITALYFILWGKGLKACGPLRAVLAEYSGAVLGVLSAVLHGRRGFVWKK 104

[Close]

BLAST of Cp4.1LG02g17180 vs. NCBI nr
Match: gi|593702515|ref|XP_007151667.1| (hypothetical protein PHAVU_004G065800g [Phaseolus vulgaris])

HSP 1 Score: 149.4 bits (376), Expect = 7.9e-33
Identity = 99/243 (40.74%), Postives = 118/243 (48.56%), Query Frame = 1


Query: 1   MMSPGPMSEDRGSSPRFRMLLFYAILKKLSGLVYPPPNMKLYPSLQTYTVADNPHGWKFL 60
           MMSP  +SEDRG                      PP + +  P    + VA+    W   
Sbjct: 1   MMSPNRVSEDRG---------------------NPPHHFRQTPLQIIHIVANFMRIWSIY 60

Query: 61  SDMVDLFHVSIFFSDWSFCCTFSVLLFGPSSHHILDFAKTLEGKAPFKYSGEAEHLAVVP 120
           S          F    +    F      P+S   L   K  +G+          +  VVP
Sbjct: 61  S------MYRYFVQTGASVVLFLFACLAPASILFLILQKPWKGRP-------LSNTQVVP 120

Query: 121 SVINGGITALYFILWGKGLKTCGPLRAILAEYSGAVLGVLSAVLYGRRGFVWKKNQLKRR 180
           S+INGGITALY +LWGKGLK+CGP RAILAEYSGAVLGVLSAVLYGRR  +WKK      
Sbjct: 121 SIINGGITALYLVLWGKGLKSCGPARAILAEYSGAVLGVLSAVLYGRRAHLWKK------ 180

Query: 181 LHAITMASATCFLFPLAMWDMIIGSTLSSDTRRELPFSTWAFLSTIIFGVILIFYVDSIA 240
                                  GS+  SD  ++LPFS WAF STI+FG I+IFY DSIA
Sbjct: 181 -----------------------GSSSESDNSKKLPFSAWAFFSTILFGNIVIFYADSIA 180

Query: 241 EER 244
           EER
Sbjct: 241 EER 180

[Close]

BLAST of Cp4.1LG02g17180 vs. NCBI nr
Match: gi|641840094|gb|KDO59017.1| (hypothetical protein CISIN_1g018499mg [Citrus sinensis])

HSP 1 Score: 147.9 bits (372), Expect = 2.3e-32
Identity = 110/282 (39.01%), Postives = 137/282 (48.58%), Query Frame = 1


Query: 1   MMSPGPMSEDRGSSPRFRMLLFYAILKKLSGLVYPPPNMKLYPSLQTYTVADNPHGWKFL 60
           MMSP P S+DRGSS                       N +  P    + +A     W   
Sbjct: 1   MMSPRPNSDDRGSS-----------------------NFRHTPLQILHIIASFLRIWSVY 60

Query: 61  SDMVDLFHVSIFFSDWSFCCTFSVLLFGPSSHHILDFAKTLEGKAPFKYSGEAEHLAVVP 120
           S    L    +    + FCC        PSS   L   K  +G+          +  +VP
Sbjct: 61  SMYRYLSQTGVSVILFIFCCLV------PSSILFLLLQKPWKGRPLL-------NTQMVP 120

Query: 121 SVINGGITALYFILWGKGLKTCGPLRAILAEYSGAVLGVLSAVLYGRRGFVWKK----NQ 180
           SVINGGITALYFILWGKGLK+CGP+RA+LAEYSGAVLGVLSAVLYGRRG VWKK      
Sbjct: 121 SVINGGITALYFILWGKGLKSCGPVRALLAEYSGAVLGVLSAVLYGRRGHVWKKVGGLIA 180

Query: 181 LKRRLHAITMASATCFLFP----------------LAMWDMIIG--STLSSDTRR----- 240
           +    + ++   AT    P                L M +M++   + + S  RR     
Sbjct: 181 ILASFYFLSQGWATETSSPFSFKDSLDAELRTEQVLGMKEMVVPLLAGILSALRRVIARR 240

Query: 241 ------------ELPFSTWAFLSTIIFGVILIFYVDSIAEER 244
                       +LPFS WAFLST +FG+ILIFYVD++AEER
Sbjct: 241 VSLKGSKSSSSVDLPFSAWAFLSTTLFGIILIFYVDAMAEER 246

[Close]

BLAST of Cp4.1LG02g17180 vs. NCBI nr
Match: gi|223539586|gb|EEF41173.1| (hypothetical protein RCOM_1570630 [Ricinus communis])

HSP 1 Score: 144.1 bits (362), Expect = 3.3e-31
Identity = 80/126 (63.49%), Postives = 86/126 (68.25%), Query Frame = 1


Query: 118 VVPSVINGGITALYFILWGKGLKTCGPLRAILAEYSGAVLGVLSAVLYGRRGFVWKKNQL 177
           VVPS+ING ITALYFILWGKGLK+CGP+RAILAEYSGAVLGVLSA LYGRR  +W+K   
Sbjct: 81  VVPSIINGAITALYFILWGKGLKSCGPVRAILAEYSGAVLGVLSATLYGRRSNLWRK--- 140

Query: 178 KRRLHAITMASATCFLFPLAMWDMIIGSTLSSDTRRELPFSTWAFLSTIIFGVILIFYVD 237
                                     GST  S    ELPFS WAFLSTI+FGVILIFYVD
Sbjct: 141 --------------------------GSTSGSIV--ELPFSAWAFLSTILFGVILIFYVD 175

Query: 238 SIAEER 244
           SIAEER
Sbjct: 201 SIAEER 175

The following BLAST results are available for this feature:

BLAST of Cp4.1LG02g17180 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG02g17180 vs. TrEMBL


Match Name	E-value	Identity	Description
V7C451_PHAVU	5.5e-33	40.74	Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_004G065800g PE=4 SV=1	[more]
A0A067F698_CITSI	1.6e-32	39.01	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g018499mg PE=4 SV=1	[more]
B9S5F2_RICCO	2.3e-31	63.49	Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1570630 PE=4 SV=1	[more]
W9SQ14_9ROSA	7.4e-30	46.75	Uncharacterized protein OS=Morus notabilis GN=L484_001187 PE=4 SV=1	[more]
R0H538_9BRAS	2.8e-29	44.34	Uncharacterized protein OS=Capsella rubella GN=CARUB_v10007229mg PE=4 SV=1	[more]

BLAST of Cp4.1LG02g17180 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G38380.1	2.2e-25	69.77	FUNCTIONS IN: molecular_function unknown	[more]

BLAST of Cp4.1LG02g17180 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778680686\|ref\|XP_011651372.1\|	2.9e-43	80.36	PREDICTED: uncharacterized protein LOC101203988 isoform X2 [Cucumis sativus]	[more]
gi\|659123303\|ref\|XP_008461593.1\|	2.7e-41	77.68	PREDICTED: uncharacterized protein LOC103500159 isoform X2 [Cucumis melo]	[more]
gi\|593702515\|ref\|XP_007151667.1\|	7.9e-33	40.74	hypothetical protein PHAVU_004G065800g [Phaseolus vulgaris]	[more]
gi\|641840094\|gb\|KDO59017.1\|	2.3e-32	39.01	hypothetical protein CISIN_1g018499mg [Citrus sinensis]	[more]
gi\|223539586\|gb\|EEF41173.1\|	3.3e-31	63.49	hypothetical protein RCOM_1570630 [Ricinus communis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Biological Process**
Term	Definition
GO:0055085	transmembrane transport
GO:0006812	cation transport

Vocabulary: **Cellular Component**
Term	Definition
GO:0016021	integral component of membrane

Vocabulary: **Molecular Function**
Term	Definition
GO:0008324	cation transmembrane transporter activity

Vocabulary: **INTERPRO**
Term	Definition
IPR002524	Cation_efflux

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006812	cation transport
biological_process	GO:0055085	transmembrane transport
biological_process	GO:0098655	cation transmembrane transport
biological_process	GO:0008150	biological_process
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003824	catalytic activity
molecular_function	GO:0008324	cation transmembrane transporter activity
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG02g17180.1	Cp4.1LG02g17180.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002524	Cation efflux protein	PANTHER	PTHR11562	CATION EFFLUX PROTEIN/ ZINC TRANSPORTER	coord: 196..243 score: 2.7
None	No IPR available	PANTHER	PTHR11562:SF58	SUBFAMILY NOT NAMED	coord: 196..243 score: 2.7

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cp4.1LG02g17180	Cucsa.031310	Cucumber (Gy14) v1	cgycpeB0008
Cp4.1LG02g17180	CmaCh14G008150	Cucurbita maxima (Rimu)	cmacpeB279
Cp4.1LG02g17180	CmoCh14G008280	Cucurbita moschata (Rifu)	cmocpeB241
Cp4.1LG02g17180	CmoCh01G004020	Cucurbita moschata (Rifu)	cmocpeB449
Cp4.1LG02g17180	Cla013239	Watermelon (97103) v1	cpewmB568
Cp4.1LG02g17180	Csa3G280960	Cucumber (Chinese Long) v2	cpecuB547
Cp4.1LG02g17180	MELO3C023807	Melon (DHL92) v3.5.1	cpemeB529
Cp4.1LG02g17180	ClCG05G011660	Watermelon (Charleston Gray)	cpewcgB518
Cp4.1LG02g17180	CSPI03G20780	Wild cucumber (PI 183967)	cpecpiB550
Cp4.1LG02g17180	Lsi05G003780	Bottle gourd (USVL1VR-Ls)	cpelsiB470
Cp4.1LG02g17180	MELO3C023807.2	Melon (DHL92) v3.6.1	cpemedB628
Cp4.1LG02g17180	CsaV3_3G020710	Cucumber (Chinese Long) v3	cpecucB0686
Cp4.1LG02g17180	Bhi01G001467	Wax gourd	cpewgoB0673
Cp4.1LG02g17180	CsGy3G020370	Cucumber (Gy14) v2	cgybcpeB380
Cp4.1LG02g17180	Carg07470	Silver-seed gourd	carcpeB1072
Cp4.1LG02g17180	Carg22267	Silver-seed gourd	carcpeB0672

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Cp4.1LG02g17180	Cp4.1LG03g06100	Cucurbita pepo (Zucchini)	cpecpeB449

The following block(s) are covering this gene:


Gene	Organism	Block
Cp4.1LG02g17180	Cucurbita maxima (Rimu)	cmacpeB491
Cp4.1LG02g17180	Cucumber (Gy14) v2	cgybcpeB096
Cp4.1LG02g17180	Melon (DHL92) v3.6.1	cpemedB630