Cp4.1LG02g11490 (gene) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG02g11490
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	Maternal effect embryo arrest 59
Location	Cp4.1LG02 : 10439100 .. 10440139 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

AAACCTTGGTATGCGCGGCCATGGTGGACCAAGCGAAAGGCTGGAAAGTCGTAGCGGGCGTAGGTAGACGGATGAGGTTTTTCGTTTTTTGTTGAGATTTTTTCTTGTTTCACCAAAAAGTGAGATCTCTTTTCAGTTTTGGTCCCCAAAATCAGTGTTCCATCTCACCAATTAATCGTGGCAGAGCCTAAAATCCACTCGTCGCTCAAAATCTACTGCAATTAATCGATCGACGGTCGAAAACCTAGAAACCGAGAATCAACAGAAATGGAGAATGGCCAAAAGCCTGGGAGGAGCGACGCTCGTCTATCCATGGAGGAAGAAGGAGAGATGGAGGCCAAAACTCGAGAGTACTTCAATGGCGTCGCACCGAAGCGCCATACTAAGCCTCAGCGTAGCGAATTCTCTGCGCATTATGTCGACAGTGTAAATCGCAAGGATGATTACATTCCTGAACTCGCCGTGTTTCAGCGCCTCGAATCCGATCCTCGCGAGGTTAGTTCTCCGATTAGTTTTCTCGATTGAGCTTTCTGTTAGTGAATCATTGATTCGATCCTCTAGGTCTCTGAAATGCAGTACTAAGTGTGCTTCTTAAGTTGAATCAGAGGTTAAATCCAATCAAATGTAGATGAACAGTGTAGAAATTTGTGGAGAAATTGAACAATGTGAGAGTATTTTCATTCTGTTGAGTCCTCGATTGTTCTGAAATTTGAGCAGAGACTTGCTTGTGATGGTCAAAACGGCAACATCTCTGAGGAATTTGTGGAGACGAAGTATTACGACGATCTAAATTACGTAGACAAACAGCACCACACGGTACTCTCTCCATCGATCAATCGATCAGCCTCATTCTCTGTTTTTGTGTTTACTAAGAAGTTGAATTTGATTTCAGACAGGAACAGGATTCATCAAAACGGAGAATGGAGATTGCAAAGGTTTCAAACTCGCAGCAGATTCTGCAACTGCCACTTGCTGCCATGCCTCTTGCAGGGGAAATCCAGCCACCAATGAATGGATTCCGGCCAGTAATGATCAGGTAA

mRNA sequence

AAACCTTGGTATGCGCGGCCATGGTGGACCAAGCGAAAGGCTGGAAAGTCGTAGCGGGCGTAGGTAGACGGATGAGGTTTTTCGTTTTTTGTTGAGATTTTTTCTTGTTTCACCAAAAAGTGAGATCTCTTTTCAGTTTTGGTCCCCAAAATCAGTGTTCCATCTCACCAATTAATCGTGGCAGAGCCTAAAATCCACTCGTCGCTCAAAATCTACTGCAATTAATCGATCGACGGTCGAAAACCTAGAAACCGAGAATCAACAGAAATGGAGAATGGCCAAAAGCCTGGGAGGAGCGACGCTCGTCTATCCATGGAGGAAGAAGGAGAGATGGAGGCCAAAACTCGAGAGTACTTCAATGGCGTCGCACCGAAGCGCCATACTAAGCCTCAGCGTAGCGAATTCTCTGCGCATTATGTCGACAGTGTAAATCGCAAGGATGATTACATTCCTGAACTCGCCGTGTTTCAGCGCCTCGAATCCGATCCTCGCGAGAGACTTGCTTGTGATGGTCAAAACGGCAACATCTCTGAGGAATTTGTGGAGACGAAGTATTACGACGATCTAAATTACGTAGACAAACAGCACCACACGGAACAGGATTCATCAAAACGGAGAATGGAGATTGCAAAGGTTTCAAACTCGCAGCAGATTCTGCAACTGCCACTTGCTGCCATGCCTCTTGCAGGGGAAATCCAGCCACCAATGAATGGATTCCGGCCAGTAATGATCAGGTAA

Coding sequence (CDS)

ATGGAGAATGGCCAAAAGCCTGGGAGGAGCGACGCTCGTCTATCCATGGAGGAAGAAGGAGAGATGGAGGCCAAAACTCGAGAGTACTTCAATGGCGTCGCACCGAAGCGCCATACTAAGCCTCAGCGTAGCGAATTCTCTGCGCATTATGTCGACAGTGTAAATCGCAAGGATGATTACATTCCTGAACTCGCCGTGTTTCAGCGCCTCGAATCCGATCCTCGCGAGAGACTTGCTTGTGATGGTCAAAACGGCAACATCTCTGAGGAATTTGTGGAGACGAAGTATTACGACGATCTAAATTACGTAGACAAACAGCACCACACGGAACAGGATTCATCAAAACGGAGAATGGAGATTGCAAAGGTTTCAAACTCGCAGCAGATTCTGCAACTGCCACTTGCTGCCATGCCTCTTGCAGGGGAAATCCAGCCACCAATGAATGGATTCCGGCCAGTAATGATCAGGTAA

Protein sequence

MENGQKPGRSDARLSMEEEGEMEAKTREYFNGVAPKRHTKPQRSEFSAHYVDSVNRKDDYIPELAVFQRLESDPRERLACDGQNGNISEEFVETKYYDDLNYVDKQHHTEQDSSKRRMEIAKVSNSQQILQLPLAAMPLAGEIQPPMNGFRPVMIR

Homology

[Close]

BLAST of Cp4.1LG02g11490 vs. TrEMBL
Match: A0A0A0M0Q2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G528510 PE=4 SV=1)

HSP 1 Score: 187.6 bits (475), Expect = 1.2e-44
Identity = 93/109 (85.32%), Postives = 98/109 (89.91%), Query Frame = 1


Query: 1   MENGQKPGRSDARLSMEEEGEMEAKTREYFNGVAPKRHTKPQRSEFSAHYVDSVNRKDDY 60
           MEN ++PGRSDARLSMEEE EMEAKTREYFNGVAPKRHTKPQRSEFSAHYVD  N +D+Y
Sbjct: 51  MENDRRPGRSDARLSMEEEREMEAKTREYFNGVAPKRHTKPQRSEFSAHYVDKGNDEDNY 110

Query: 61  IPELAVFQRLESDPRERLACDGQNGNISEEFVETKYYDDLNYVDKQHHT 110
           IPELA FQRLESDP ERL  DG+NG ISEEFVETKYYDDLN VDKQHHT
Sbjct: 111 IPELAEFQRLESDPHERLTYDGRNGKISEEFVETKYYDDLNCVDKQHHT 159

[Close]

BLAST of Cp4.1LG02g11490 vs. TrEMBL
Match: B7FGG7_MEDTR (Maternal effect embryo arrest protein, putative OS=Medicago truncatula GN=MTR_3g462220 PE=2 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 4.2e-26
Identity = 67/110 (60.91%), Postives = 83/110 (75.45%), Query Frame = 1


Query: 1   MENGQKPGRSDARLSMEEEGEMEAKTREYFNGVAPKRHTKPQRSEFSAHYVDSVNRKDDY 60
           ME+ ++P RSD  LS EEE  +EAKTR +F  VAPKRHTKPQRSE+++ YVDS N  D+ 
Sbjct: 1   MEDVRRPNRSDTHLSAEEEASIEAKTRHHFEEVAPKRHTKPQRSEYASQYVDS-NVSDNS 60

Query: 61  IPELAVFQRLESDPRE-RLACDGQNGNISEEFVETKYYDDLNYVDKQHHT 110
           +PE+  FQRLE+DP+E +L  DG    +SEEFVET+YY DLN VDK HHT
Sbjct: 61  VPEMLQFQRLENDPQEKKLVYDG--NEVSEEFVETEYYKDLNSVDKHHHT 107

[Close]

BLAST of Cp4.1LG02g11490 vs. TrEMBL
Match: I3SNK7_MEDTR (Uncharacterized protein OS=Medicago truncatula PE=2 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 4.2e-26
Identity = 67/110 (60.91%), Postives = 83/110 (75.45%), Query Frame = 1


Query: 1   MENGQKPGRSDARLSMEEEGEMEAKTREYFNGVAPKRHTKPQRSEFSAHYVDSVNRKDDY 60
           ME+ ++P RSD  LS EEE  +EAKTR +F  VAPKRHTKPQRSE+++ YVDS N  D+ 
Sbjct: 1   MEDVRRPNRSDTHLSAEEEASIEAKTRHHFEEVAPKRHTKPQRSEYASQYVDS-NVSDNS 60

Query: 61  IPELAVFQRLESDPRE-RLACDGQNGNISEEFVETKYYDDLNYVDKQHHT 110
           +PE+  FQRLE+DP+E +L  DG    +SEEFVET+YY DLN VDK HHT
Sbjct: 61  VPEMLQFQRLENDPQEKKLVYDG--NEVSEEFVETEYYKDLNSVDKHHHT 107

[Close]

BLAST of Cp4.1LG02g11490 vs. TrEMBL
Match: A0A151SZF2_CAJCA (Uncharacterized protein OS=Cajanus cajan GN=KK1_015619 PE=4 SV=1)

HSP 1 Score: 125.6 bits (314), Expect = 5.5e-26
Identity = 68/112 (60.71%), Postives = 81/112 (72.32%), Query Frame = 1


Query: 1   MENGQKPGRSDARLSMEEEGEMEAKTREYFNGVAPKRHTKPQRSEFSAHYVDSVNRK--D 60
           ME   +P RSD  LS E +  +EA+TR+YF+GV PKRHTKPQRSE+S  YVDS+N    D
Sbjct: 1   MECYTRPNRSDIHLSPEAQASIEAQTRDYFDGVLPKRHTKPQRSEYSTKYVDSLNNNGHD 60

Query: 61  DYIPELAVFQRLESDPRE-RLACDGQNGNISEEFVETKYYDDLNYVDKQHHT 110
             IPEL  FQRLE+DP E +L CDG    ++EEFVET+YY DLN VDK HHT
Sbjct: 61  SSIPELLHFQRLENDPHEKKLVCDG--CQVTEEFVETEYYKDLNSVDKHHHT 110

[Close]

BLAST of Cp4.1LG02g11490 vs. TrEMBL
Match: D9IZZ8_HEVBR (Putative uncharacterized protein OS=Hevea brasiliensis PE=2 SV=1)

HSP 1 Score: 122.1 bits (305), Expect = 6.0e-25
Identity = 64/112 (57.14%), Postives = 84/112 (75.00%), Query Frame = 1


Query: 1   MENGQKPGRSDARLSMEEEGEMEAKTREYFNGVAPKRHTKPQRSEFSAHYVDSV---NRK 60
           ME   +P RSD  LS EEE +++ +T+EYF+G+A KRH+KPQRSEFSA YVD++   N  
Sbjct: 1   MEFHGRPHRSDIHLSAEEEAKIQEETKEYFDGLAAKRHSKPQRSEFSAQYVDALPFTNSL 60

Query: 61  DDYIPELAVFQRLESDPRERLACDGQNGNISEEFVETKYYDDLNYVDKQHHT 110
              IPEL  FQRLE+DP ++L C+G NG + E+FVET+YY DLN +DK+HHT
Sbjct: 61  PSSIPELVKFQRLENDP-QKLVCNG-NGQVGEDFVETEYYKDLNCIDKKHHT 110

[Close]

BLAST of Cp4.1LG02g11490 vs. TAIR10
Match: AT4G37300.1 (AT4G37300.1 maternal effect embryo arrest 59)

HSP 1 Score: 68.6 bits (166), Expect = 4.0e-12
Identity = 46/137 (33.58%), Postives = 71/137 (51.82%), Query Frame = 1


Query: 6   KPGRSDARLSMEEEGEMEAKTREYFNGVAPKRHTKPQRSEFSAHYVDSVNRKDDYIPELA 65
           KP RSD     E++ +   + R  F+ +APKR TKP RSE       S + K    PE  
Sbjct: 5   KPSRSDEISDPEQQIKNANQIRADFDSLAPKRPTKPTRSEPGFPGSFSASDKITDHPEAD 64

Query: 66  VFQRLESDPRERLACDGQNGNISEEFVETKYYDDLNYVDKQHHTEQDSSKRRMEIAKVSN 125
            FQ L+S    ++  +G +  + +EF+ET+YY +L  +DKQHHT   +    + + K  N
Sbjct: 65  KFQSLQSQTHGKVLGEGDSSAVQDEFLETEYYSNLTAIDKQHHT---TGSGFINVVKEDN 124

Query: 126 SQQILQLPLAAMPLAGE 143
            ++   +  AA+   GE
Sbjct: 125 GEESEAVTAAAIGDGGE 138

[Close]

BLAST of Cp4.1LG02g11490 vs. NCBI nr
Match: gi|778661636|ref|XP_011658480.1| (PREDICTED: uncharacterized protein LOC101210530 isoform X4 [Cucumis sativus])

HSP 1 Score: 187.6 bits (475), Expect = 1.7e-44
Identity = 93/109 (85.32%), Postives = 98/109 (89.91%), Query Frame = 1


Query: 1   MENGQKPGRSDARLSMEEEGEMEAKTREYFNGVAPKRHTKPQRSEFSAHYVDSVNRKDDY 60
           MEN ++PGRSDARLSMEEE EMEAKTREYFNGVAPKRHTKPQRSEFSAHYVD  N +D+Y
Sbjct: 1   MENDRRPGRSDARLSMEEEREMEAKTREYFNGVAPKRHTKPQRSEFSAHYVDKGNDEDNY 60

Query: 61  IPELAVFQRLESDPRERLACDGQNGNISEEFVETKYYDDLNYVDKQHHT 110
           IPELA FQRLESDP ERL  DG+NG ISEEFVETKYYDDLN VDKQHHT
Sbjct: 61  IPELAEFQRLESDPHERLTYDGRNGKISEEFVETKYYDDLNCVDKQHHT 109

[Close]

BLAST of Cp4.1LG02g11490 vs. NCBI nr
Match: gi|700210690|gb|KGN65786.1| (hypothetical protein Csa_1G528510 [Cucumis sativus])

HSP 1 Score: 187.6 bits (475), Expect = 1.7e-44
Identity = 93/109 (85.32%), Postives = 98/109 (89.91%), Query Frame = 1


Query: 1   MENGQKPGRSDARLSMEEEGEMEAKTREYFNGVAPKRHTKPQRSEFSAHYVDSVNRKDDY 60
           MEN ++PGRSDARLSMEEE EMEAKTREYFNGVAPKRHTKPQRSEFSAHYVD  N +D+Y
Sbjct: 51  MENDRRPGRSDARLSMEEEREMEAKTREYFNGVAPKRHTKPQRSEFSAHYVDKGNDEDNY 110

Query: 61  IPELAVFQRLESDPRERLACDGQNGNISEEFVETKYYDDLNYVDKQHHT 110
           IPELA FQRLESDP ERL  DG+NG ISEEFVETKYYDDLN VDKQHHT
Sbjct: 111 IPELAEFQRLESDPHERLTYDGRNGKISEEFVETKYYDDLNCVDKQHHT 159

[Close]

BLAST of Cp4.1LG02g11490 vs. NCBI nr
Match: gi|449474598|ref|XP_004154227.1| (PREDICTED: uncharacterized protein LOC101210530 isoform X2 [Cucumis sativus])

HSP 1 Score: 187.6 bits (475), Expect = 1.7e-44
Identity = 93/109 (85.32%), Postives = 98/109 (89.91%), Query Frame = 1


Query: 1   MENGQKPGRSDARLSMEEEGEMEAKTREYFNGVAPKRHTKPQRSEFSAHYVDSVNRKDDY 60
           MEN ++PGRSDARLSMEEE EMEAKTREYFNGVAPKRHTKPQRSEFSAHYVD  N +D+Y
Sbjct: 1   MENDRRPGRSDARLSMEEEREMEAKTREYFNGVAPKRHTKPQRSEFSAHYVDKGNDEDNY 60

Query: 61  IPELAVFQRLESDPRERLACDGQNGNISEEFVETKYYDDLNYVDKQHHT 110
           IPELA FQRLESDP ERL  DG+NG ISEEFVETKYYDDLN VDKQHHT
Sbjct: 61  IPELAEFQRLESDPHERLTYDGRNGKISEEFVETKYYDDLNCVDKQHHT 109

[Close]

BLAST of Cp4.1LG02g11490 vs. NCBI nr
Match: gi|659115135|ref|XP_008457404.1| (PREDICTED: uncharacterized protein LOC103497099 isoform X4 [Cucumis melo])

HSP 1 Score: 187.2 bits (474), Expect = 2.2e-44
Identity = 93/109 (85.32%), Postives = 98/109 (89.91%), Query Frame = 1


Query: 1   MENGQKPGRSDARLSMEEEGEMEAKTREYFNGVAPKRHTKPQRSEFSAHYVDSVNRKDDY 60
           MEN ++PGRSDARLSMEEE EMEAKTREYFNGVA KRHTKPQRSEFSAHYVD VN +D+Y
Sbjct: 1   MENDRRPGRSDARLSMEEEREMEAKTREYFNGVATKRHTKPQRSEFSAHYVDKVNDEDNY 60

Query: 61  IPELAVFQRLESDPRERLACDGQNGNISEEFVETKYYDDLNYVDKQHHT 110
           IPELA FQRLESDP ERL  DG+NG ISEEFVETKYYDDLN VDKQHHT
Sbjct: 61  IPELAKFQRLESDPHERLTYDGRNGKISEEFVETKYYDDLNCVDKQHHT 109

[Close]

BLAST of Cp4.1LG02g11490 vs. NCBI nr
Match: gi|659115131|ref|XP_008457402.1| (PREDICTED: uncharacterized protein LOC103497099 isoform X2 [Cucumis melo])

HSP 1 Score: 187.2 bits (474), Expect = 2.2e-44
Identity = 93/109 (85.32%), Postives = 98/109 (89.91%), Query Frame = 1


Query: 1   MENGQKPGRSDARLSMEEEGEMEAKTREYFNGVAPKRHTKPQRSEFSAHYVDSVNRKDDY 60
           MEN ++PGRSDARLSMEEE EMEAKTREYFNGVA KRHTKPQRSEFSAHYVD VN +D+Y
Sbjct: 1   MENDRRPGRSDARLSMEEEREMEAKTREYFNGVATKRHTKPQRSEFSAHYVDKVNDEDNY 60

Query: 61  IPELAVFQRLESDPRERLACDGQNGNISEEFVETKYYDDLNYVDKQHHT 110
           IPELA FQRLESDP ERL  DG+NG ISEEFVETKYYDDLN VDKQHHT
Sbjct: 61  IPELAKFQRLESDPHERLTYDGRNGKISEEFVETKYYDDLNCVDKQHHT 109

The following BLAST results are available for this feature:

BLAST of Cp4.1LG02g11490 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG02g11490 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0M0Q2_CUCSA	1.2e-44	85.32	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G528510 PE=4 SV=1	[more]
B7FGG7_MEDTR	4.2e-26	60.91	Maternal effect embryo arrest protein, putative OS=Medicago truncatula GN=MTR_3g...	[more]
I3SNK7_MEDTR	4.2e-26	60.91	Uncharacterized protein OS=Medicago truncatula PE=2 SV=1	[more]
A0A151SZF2_CAJCA	5.5e-26	60.71	Uncharacterized protein OS=Cajanus cajan GN=KK1_015619 PE=4 SV=1	[more]
D9IZZ8_HEVBR	6.0e-25	57.14	Putative uncharacterized protein OS=Hevea brasiliensis PE=2 SV=1	[more]

BLAST of Cp4.1LG02g11490 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G37300.1	4.0e-12	33.58	maternal effect embryo arrest 59	[more]

BLAST of Cp4.1LG02g11490 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778661636\|ref\|XP_011658480.1\|	1.7e-44	85.32	PREDICTED: uncharacterized protein LOC101210530 isoform X4 [Cucumis sativus]	[more]
gi\|700210690\|gb\|KGN65786.1\|	1.7e-44	85.32	hypothetical protein Csa_1G528510 [Cucumis sativus]	[more]
gi\|449474598\|ref\|XP_004154227.1\|	1.7e-44	85.32	PREDICTED: uncharacterized protein LOC101210530 isoform X2 [Cucumis sativus]	[more]
gi\|659115135\|ref\|XP_008457404.1\|	2.2e-44	85.32	PREDICTED: uncharacterized protein LOC103497099 isoform X4 [Cucumis melo]	[more]
gi\|659115131\|ref\|XP_008457402.1\|	2.2e-44	85.32	PREDICTED: uncharacterized protein LOC103497099 isoform X2 [Cucumis melo]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG02g11490.1	Cp4.1LG02g11490.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34686	FAMILY NOT NAMED	coord: 1..109 score: 8.2
None	No IPR available	PANTHER	PTHR34686:SF1	SUBFAMILY NOT NAMED	coord: 1..109 score: 8.2

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cp4.1LG02g11490	Cucsa.146850	Cucumber (Gy14) v1	cgycpeB0391
Cp4.1LG02g11490	CmaCh01G006480	Cucurbita maxima (Rimu)	cmacpeB492
Cp4.1LG02g11490	CmoCh13G000750	Cucurbita moschata (Rifu)	cmocpeB207
Cp4.1LG02g11490	CmoCh01G006810	Cucurbita moschata (Rifu)	cmocpeB451
Cp4.1LG02g11490	Cla008185	Watermelon (97103) v1	cpewmB549
Cp4.1LG02g11490	Csa1G528510	Cucumber (Chinese Long) v2	cpecuB535
Cp4.1LG02g11490	MELO3C020570	Melon (DHL92) v3.5.1	cpemeB492
Cp4.1LG02g11490	ClCG03G000970	Watermelon (Charleston Gray)	cpewcgB501
Cp4.1LG02g11490	CSPI01G23670	Wild cucumber (PI 183967)	cpecpiB537
Cp4.1LG02g11490	Lsi02G013060	Bottle gourd (USVL1VR-Ls)	cpelsiB441
Cp4.1LG02g11490	MELO3C020570.2	Melon (DHL92) v3.6.1	cpemedB584
Cp4.1LG02g11490	CsaV3_1G035970	Cucumber (Chinese Long) v3	cpecucB0666
Cp4.1LG02g11490	Bhi08G000441	Wax gourd	cpewgoB0701
Cp4.1LG02g11490	CsGy1G023130	Cucumber (Gy14) v2	cgybcpeB100
Cp4.1LG02g11490	Carg12416	Silver-seed gourd	carcpeB0623
Cp4.1LG02g11490	Carg20616	Silver-seed gourd	carcpeB0533

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Cp4.1LG02g11490	Cp4.1LG20g08160	Cucurbita pepo (Zucchini)	cpecpeB435

The following block(s) are covering this gene:


Gene	Organism	Block
Cp4.1LG02g11490	Cucurbita pepo (Zucchini)	cpecpeB448