Cp4.1LG02g08760 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG02g08760
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionUnknown protein
LocationCp4.1LG02 : 6507587 .. 6507829 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAGGGCCAGATGGAGGAACTGGGAAGGCCTTTGGAAGGAAGCCATTGACAAGGCTTGGAGAATTGCTTCTAAATTTGAGAGGTTTTTCATTGAAGAGGTGGTTGAATCTTGAGGCATGGGTGAAGCCCACGCAGAGAAGCAGCATTAGCAACCATATTGCCACCAAAACTTCACGTCCGTTTCCCATTGAAGAAGAAAAGGATTTTAGTATGAGTATATATAAAGAAGAAGAGATTTAG

mRNA sequence

ATGGAAGGGCCAGATGGAGGAACTGGGAAGGCCTTTGGAAGGAAGCCATTGACAAGGCTTGGAGAATTGCTTCTAAATTTGAGAGGTTTTTCATTGAAGAGGTGGTTGAATCTTGAGGCATGGGTGAAGCCCACGCAGAGAAGCAGCATTAGCAACCATATTGCCACCAAAACTTCACGTCCGTTTCCCATTGAAGAAGAAAAGGATTTTAGTATGAGTATATATAAAGAAGAAGAGATTTAG

Coding sequence (CDS)

ATGGAAGGGCCAGATGGAGGAACTGGGAAGGCCTTTGGAAGGAAGCCATTGACAAGGCTTGGAGAATTGCTTCTAAATTTGAGAGGTTTTTCATTGAAGAGGTGGTTGAATCTTGAGGCATGGGTGAAGCCCACGCAGAGAAGCAGCATTAGCAACCATATTGCCACCAAAACTTCACGTCCGTTTCCCATTGAAGAAGAAAAGGATTTTAGTATGAGTATATATAAAGAAGAAGAGATTTAG

Protein sequence

MEGPDGGTGKAFGRKPLTRLGELLLNLRGFSLKRWLNLEAWVKPTQRSSISNHIATKTSRPFPIEEEKDFSMSIYKEEEI
Homology
[Close]
BLAST of Cp4.1LG02g08760 vs. TrEMBL
Match: A0A0A0K4X2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G314950 PE=4 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 3.1e-09
Identity = 40/69 (57.97%), Postives = 46/69 (66.67%), Query Frame = 1 

Query: 1  MEGPDGGTGKAFGRKPLTRLGELLLNLRGFSLK-RWLNLEAWVKPTQRSSI---SNHIAT 60
          +EGP+GGTGKA GRK LT  GELL  L    L    L+LE W+KPT + SI   +NHI T
Sbjct: 6  IEGPEGGTGKALGRKALTNAGELLSLLTLMLLMLSCLSLEPWLKPTYKMSIKTRTNHITT 65

Query: 61 KTSRPFPIE 66
           TS PFPIE
Sbjct: 66 ITSLPFPIE 74

[Close]
BLAST of Cp4.1LG02g08760 vs. NCBI nr
Match: gi|700189260|gb|KGN44493.1| (hypothetical protein Csa_7G314950 [Cucumis sativus])

HSP 1 Score: 68.9 bits (167), Expect = 4.5e-09
Identity = 40/69 (57.97%), Postives = 46/69 (66.67%), Query Frame = 1 

Query: 1  MEGPDGGTGKAFGRKPLTRLGELLLNLRGFSLK-RWLNLEAWVKPTQRSSI---SNHIAT 60
          +EGP+GGTGKA GRK LT  GELL  L    L    L+LE W+KPT + SI   +NHI T
Sbjct: 6  IEGPEGGTGKALGRKALTNAGELLSLLTLMLLMLSCLSLEPWLKPTYKMSIKTRTNHITT 65

Query: 61 KTSRPFPIE 66
           TS PFPIE
Sbjct: 66 ITSLPFPIE 74

The following BLAST results are available for this feature:
BLAST of Cp4.1LG02g08760 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG02g08760 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K4X2_CUCSA3.1e-0957.97Uncharacterized protein OS=Cucumis sativus GN=Csa_7G314950 PE=4 SV=1[more]
BLAST of Cp4.1LG02g08760 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG02g08760 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700189260|gb|KGN44493.1|4.5e-0957.97hypothetical protein Csa_7G314950 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG02g08760.1Cp4.1LG02g08760.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG02g08760CmaCh01G009870Cucurbita maxima (Rimu)cmacpeB490
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG02g08760Cucumber (Gy14) v2cgybcpeB952
Cp4.1LG02g08760Melon (DHL92) v3.6.1cpemedB594
Cp4.1LG02g08760Melon (DHL92) v3.6.1cpemedB597
Cp4.1LG02g08760Cucumber (Chinese Long) v3cpecucB0732
Cp4.1LG02g08760Wax gourdcpewgoB0718
Cp4.1LG02g08760Wax gourdcpewgoB0736
Cp4.1LG02g08760Cucurbita pepo (Zucchini)cpecpeB460
Cp4.1LG02g08760Cucumber (Gy14) v1cgycpeB0137
Cp4.1LG02g08760Cucurbita maxima (Rimu)cmacpeB046
Cp4.1LG02g08760Cucurbita moschata (Rifu)cmocpeB021
Cp4.1LG02g08760Cucurbita moschata (Rifu)cmocpeB448
Cp4.1LG02g08760Wild cucumber (PI 183967)cpecpiB593
Cp4.1LG02g08760Cucumber (Chinese Long) v2cpecuB592
Cp4.1LG02g08760Bottle gourd (USVL1VR-Ls)cpelsiB448
Cp4.1LG02g08760Watermelon (Charleston Gray)cpewcgB479
Cp4.1LG02g08760Watermelon (97103) v1cpewmB532
Cp4.1LG02g08760Melon (DHL92) v3.5.1cpemeB502
Cp4.1LG02g08760Melon (DHL92) v3.5.1cpemeB505