Cp4.1LG02g06880 (gene) Cucurbita pepo (Zucchini)

NameCp4.1LG02g06880
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionUnknown protein
LocationCp4.1LG02 : 1025172 .. 1026446 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTTGTACAGTTGATCGATGCTACAACTTGCAGGACAGAGGGCCTTTTGCGACAGAATACTCATGCATCCTTATGTATGGTGGTTCGACGAAGAGGACTAGACCATGCTTTGGTATATATATGCTTTTCTTGTTTCATCTAAGTTCGGATTTGGGATTGGATTCTTACGGTGTGAATCAAATGGTTAGGTGGAGGCTCACACCCAATCTTTGAAGAGAAATTTGTTTTCGAATTCATTGAAGGAGTTGTAGAATTGAACATTTGGATCTTAACCAATCGGTCCTCGGGAAATGAAGAAGCTCTCGGCTTCCTAAGGTAAGACTCAACCTTAATTCAGAGATGAGCTAACCATCAGTTGATTTTCAATTACCCCTAACCATGAGTGTCACAAACTTTCCTCTTAACGTCCTTAGAGTTGAGCTGCAACAAGTACTTTTCAATGGCTATGTTGACTCGACCTGGACTCTACACAGTACAGATGGAAGGCCCGCAGGCTCTATACGACTCACATTGCAATTTCCCCCAGTTCTAGGGTAATCTCTATATCTTGTATCTCTTTATCCACAAACCACAAGCGCAAATAGTTATTTCTTTTTATCTTGATTTGCCGCAGTTTCAAGGCCAAGGTTCAATCTACGAAGCGCCAACGTTGGATTCTACGGCTCCTGTAGGTACACCCCAAGCTCCGATATTGTACCAACTCCTACCGTATGACGCCCGTCCGCCGCCGAGGCCTGCATCTTTTGTTGGCCCAAATGCTTCCTATCCTCCCAATTCAGCTGTGGCACAACAACCAAATGGCACAGGACCCGCCGCTGAATGGTCCCAATTCCTACCGTATGGATCTCCTTCACCGGCTGCCCCTGCTTGTGCCTATAATTCAACCACTACCCCACCTCTAGGCTACCCTCTGCCACAATACCCACCAGGTACATTTTCATTTCTTCATTGTTTTTTTCTTACTACTTTTGCTATCCAGCAACGCTAATTAATTGGCTGTTTAAACCTCCTTGAATTTTAGGTTTGAACCCCTCTGATATTTACCCGCCTCCACCACGCTGACAACTCACCTCAAGATGTCTGAATTATATGCTTTTGTTAAACACAAAGTTGAAGGATGTTGTAGATTAATTTGAGAGCTTTTCTAGTATTTCTCCGCTACCTACTTTTTGTTCGTCCTATGAAAAACAGTATCCATATGGGAACTGTTTGAGTCTCTGCCCCACCATCAAATTTTTTCTGTATTTTGGTTTGTTCAGAATTCGAATCATAA

mRNA sequence

ATGGTTTTGATCGATGCTACAACTTGCAGGACAGAGGGCCTTTTGCGACAGAATACTCATGCATCCTTATGTATGGTGGTTCGACGAAGAGGACTAGACCATGCTTTGTTTCAAGGCCAAGGTTCAATCTACGAAGCGCCAACGTTGGATTCTACGGCTCCTGTAGGTACACCCCAAGCTCCGATATTGTACCAACTCCTACCGTATGACGCCCGTCCGCCGCCGAGGCCTGCATCTTTTGTTGGCCCAAATGCTTCCTATCCTCCCAATTCAGCTGTGGCACAACAACCAAATGGCACAGGACCCGCCGCTGAATGGTCCCAATTCCTACCGTATGGATCTCCTTCACCGGCTGCCCCTGCTTGTGCCTATAATTCAACCACTACCCCACCTCTAGGCTACCCTCTGCCACAATACCCACCAGAATTCGAATCATAA

Coding sequence (CDS)

ATGGTTTTGATCGATGCTACAACTTGCAGGACAGAGGGCCTTTTGCGACAGAATACTCATGCATCCTTATGTATGGTGGTTCGACGAAGAGGACTAGACCATGCTTTGTTTCAAGGCCAAGGTTCAATCTACGAAGCGCCAACGTTGGATTCTACGGCTCCTGTAGGTACACCCCAAGCTCCGATATTGTACCAACTCCTACCGTATGACGCCCGTCCGCCGCCGAGGCCTGCATCTTTTGTTGGCCCAAATGCTTCCTATCCTCCCAATTCAGCTGTGGCACAACAACCAAATGGCACAGGACCCGCCGCTGAATGGTCCCAATTCCTACCGTATGGATCTCCTTCACCGGCTGCCCCTGCTTGTGCCTATAATTCAACCACTACCCCACCTCTAGGCTACCCTCTGCCACAATACCCACCAGAATTCGAATCATAA

Protein sequence

MVLIDATTCRTEGLLRQNTHASLCMVVRRRGLDHALFQGQGSIYEAPTLDSTAPVGTPQAPILYQLLPYDARPPPRPASFVGPNASYPPNSAVAQQPNGTGPAAEWSQFLPYGSPSPAAPACAYNSTTTPPLGYPLPQYPPEFES
BLAST of Cp4.1LG02g06880 vs. TrEMBL
Match: A0A0A0KZU8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G641630 PE=4 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 1.3e-13
Identity = 56/109 (51.38%), Postives = 61/109 (55.96%), Query Frame = 1

Query: 36  LFQGQGSIYEAPTLDSTAPV---GTPQAPILYQLLPYDARPPPRPASFVGPNASYPPNSA 95
           + + Q S Y AP LDSTAP    GT Q PILY LLPY ARPPP P               
Sbjct: 18  VLERQDSYYTAPRLDSTAPPEADGT-QRPILYNLLPYGARPPPSPT-------------- 77

Query: 96  VAQQPNGTGPAAEWSQFLPYGSPSPAAPACAYNSTTTPPLGYPLPQYPP 142
              QPN +  AA WSQFLPYGSP P     AYN+TT PP GYP+   PP
Sbjct: 78  ---QPNESA-AALWSQFLPYGSPPPT--TSAYNTTTAPPAGYPIHSPPP 105

BLAST of Cp4.1LG02g06880 vs. NCBI nr
Match: gi|700200072|gb|KGN55230.1| (hypothetical protein Csa_4G641630 [Cucumis sativus])

HSP 1 Score: 84.3 bits (207), Expect = 1.9e-13
Identity = 56/109 (51.38%), Postives = 61/109 (55.96%), Query Frame = 1

Query: 36  LFQGQGSIYEAPTLDSTAPV---GTPQAPILYQLLPYDARPPPRPASFVGPNASYPPNSA 95
           + + Q S Y AP LDSTAP    GT Q PILY LLPY ARPPP P               
Sbjct: 18  VLERQDSYYTAPRLDSTAPPEADGT-QRPILYNLLPYGARPPPSPT-------------- 77

Query: 96  VAQQPNGTGPAAEWSQFLPYGSPSPAAPACAYNSTTTPPLGYPLPQYPP 142
              QPN +  AA WSQFLPYGSP P     AYN+TT PP GYP+   PP
Sbjct: 78  ---QPNESA-AALWSQFLPYGSPPPT--TSAYNTTTAPPAGYPIHSPPP 105

BLAST of Cp4.1LG02g06880 vs. NCBI nr
Match: gi|778696265|ref|XP_011654132.1| (PREDICTED: actin cytoskeleton-regulatory complex protein PAN1-like isoform X1 [Cucumis sativus])

HSP 1 Score: 83.6 bits (205), Expect = 3.2e-13
Identity = 56/105 (53.33%), Postives = 59/105 (56.19%), Query Frame = 1

Query: 40  QGSIYEAPTLDSTAPV---GTPQAPILYQLLPYDARPPPRPASFVGPNASYPPNSAVAQQ 99
           Q S Y AP LDSTAP    GT Q PILY LLPY ARPPP P                  Q
Sbjct: 164 QDSYYTAPRLDSTAPPEADGT-QRPILYNLLPYGARPPPSPT-----------------Q 223

Query: 100 PNGTGPAAEWSQFLPYGSPSPAAPACAYNSTTTPPLGYPLPQYPP 142
           PN +  AA WSQFLPYGSP P     AYN+TT PP GYP+   PP
Sbjct: 224 PNESA-AALWSQFLPYGSPPPT--TSAYNTTTAPPAGYPIHSPPP 247

BLAST of Cp4.1LG02g06880 vs. NCBI nr
Match: gi|778696278|ref|XP_011654133.1| (PREDICTED: actin cytoskeleton-regulatory complex protein PAN1-like isoform X2 [Cucumis sativus])

HSP 1 Score: 83.6 bits (205), Expect = 3.2e-13
Identity = 56/105 (53.33%), Postives = 59/105 (56.19%), Query Frame = 1

Query: 40  QGSIYEAPTLDSTAPV---GTPQAPILYQLLPYDARPPPRPASFVGPNASYPPNSAVAQQ 99
           Q S Y AP LDSTAP    GT Q PILY LLPY ARPPP P                  Q
Sbjct: 140 QDSYYTAPRLDSTAPPEADGT-QRPILYNLLPYGARPPPSPT-----------------Q 199

Query: 100 PNGTGPAAEWSQFLPYGSPSPAAPACAYNSTTTPPLGYPLPQYPP 142
           PN +  AA WSQFLPYGSP P     AYN+TT PP GYP+   PP
Sbjct: 200 PNESA-AALWSQFLPYGSPPPT--TSAYNTTTAPPAGYPIHSPPP 223

BLAST of Cp4.1LG02g06880 vs. NCBI nr
Match: gi|659103361|ref|XP_008452599.1| (PREDICTED: formin-like protein 20 [Cucumis melo])

HSP 1 Score: 82.4 bits (202), Expect = 7.1e-13
Identity = 56/105 (53.33%), Postives = 59/105 (56.19%), Query Frame = 1

Query: 40  QGSIYEAPTLDSTAPV---GTPQAPILYQLLPYDARPPPRPASFVGPNASYPPNSAVAQQ 99
           Q S Y AP LDSTAP    GT Q PIL+QLLPY  RPPP P                  Q
Sbjct: 141 QDSYYTAPRLDSTAPPEAEGT-QRPILHQLLPYGGRPPPSPT-----------------Q 200

Query: 100 PNGTGPAAEWSQFLPYGSPSPAAPACAYNSTTTPPLGYPLPQYPP 142
           PN +  AA WSQFLPYGSP P   A AYN TT PP GYP+   PP
Sbjct: 201 PNESA-AALWSQFLPYGSPPPT--ASAYNPTTAPPAGYPIHPPPP 224

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0KZU8_CUCSA1.3e-1351.38Uncharacterized protein OS=Cucumis sativus GN=Csa_4G641630 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
gi|700200072|gb|KGN55230.1|1.9e-1351.38hypothetical protein Csa_4G641630 [Cucumis sativus][more]
gi|778696265|ref|XP_011654132.1|3.2e-1353.33PREDICTED: actin cytoskeleton-regulatory complex protein PAN1-like isoform X1 [C... [more]
gi|778696278|ref|XP_011654133.1|3.2e-1353.33PREDICTED: actin cytoskeleton-regulatory complex protein PAN1-like isoform X2 [C... [more]
gi|659103361|ref|XP_008452599.1|7.1e-1353.33PREDICTED: formin-like protein 20 [Cucumis melo][more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
molecular_function GO:0005515 protein binding

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG02g06880.1Cp4.1LG02g06880.1mRNA


The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG02g06880Silver-seed gourdcarcpeB0265
Cp4.1LG02g06880Silver-seed gourdcarcpeB0567
Cp4.1LG02g06880Silver-seed gourdcarcpeB1107
Cp4.1LG02g06880Silver-seed gourdcarcpeB1136
Cp4.1LG02g06880Cucumber (Chinese Long) v3cpecucB0675
Cp4.1LG02g06880Cucumber (Chinese Long) v3cpecucB0722
Cp4.1LG02g06880Cucumber (Chinese Long) v3cpecucB0736
Cp4.1LG02g06880Wax gourdcpewgoB0684
Cp4.1LG02g06880Cucurbita pepo (Zucchini)cpecpeB090
Cp4.1LG02g06880Cucurbita pepo (Zucchini)cpecpeB125
Cp4.1LG02g06880Cucurbita pepo (Zucchini)cpecpeB264
Cp4.1LG02g06880Cucurbita pepo (Zucchini)cpecpeB414
Cp4.1LG02g06880Cucurbita pepo (Zucchini)cpecpeB459
Cp4.1LG02g06880Cucurbita pepo (Zucchini)cpecpeB471
Cp4.1LG02g06880Cucumber (Gy14) v1cgycpeB0922
Cp4.1LG02g06880Cucumber (Gy14) v1cgycpeB1043
Cp4.1LG02g06880Cucurbita maxima (Rimu)cmacpeB045
Cp4.1LG02g06880Cucurbita maxima (Rimu)cmacpeB192
Cp4.1LG02g06880Cucurbita maxima (Rimu)cmacpeB780
Cp4.1LG02g06880Cucurbita moschata (Rifu)cmocpeB020
Cp4.1LG02g06880Cucurbita moschata (Rifu)cmocpeB166
Cp4.1LG02g06880Cucurbita moschata (Rifu)cmocpeB633
Cp4.1LG02g06880Cucurbita moschata (Rifu)cmocpeB734
Cp4.1LG02g06880Wild cucumber (PI 183967)cpecpiB541
Cp4.1LG02g06880Wild cucumber (PI 183967)cpecpiB579
Cp4.1LG02g06880Cucumber (Chinese Long) v2cpecuB539
Cp4.1LG02g06880Cucumber (Chinese Long) v2cpecuB578
Cp4.1LG02g06880Cucumber (Chinese Long) v2cpecuB583
Cp4.1LG02g06880Bottle gourd (USVL1VR-Ls)cpelsiB454
Cp4.1LG02g06880Bottle gourd (USVL1VR-Ls)cpelsiB477
Cp4.1LG02g06880Watermelon (Charleston Gray)cpewcgB528
Cp4.1LG02g06880Watermelon (97103) v1cpewmB541
Cp4.1LG02g06880Melon (DHL92) v3.5.1cpemeB508
Cp4.1LG02g06880Melon (DHL92) v3.5.1cpemeB537
Cp4.1LG02g06880Cucumber (Gy14) v2cgybcpeB224
Cp4.1LG02g06880Cucumber (Gy14) v2cgybcpeB820
Cp4.1LG02g06880Cucumber (Gy14) v2cgybcpeB955
Cp4.1LG02g06880Melon (DHL92) v3.6.1cpemedB605
Cp4.1LG02g06880Melon (DHL92) v3.6.1cpemedB648