Cp4.1LG02g06260 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG02g06260
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionUnknown protein
LocationCp4.1LG02 : 1293329 .. 1293541 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCGCCGTCTCCAACGCTTCCTTCATGGCTCTTGTAGCTGTTCTGTTCGCTGTACTCTCCATTGCCGTCGCGCAATCTGCTCAGTCTCCTGCTCCGGCACCGGCTTCTCCGGCACCGGCTTCTCCGGCTACCTCTGTCGTGCCGTCGTTGAGCTTTGCTTTCGTTGGTGCCTTCGTCGCTCTCGTCTTTGGATCTGCACTTAAGGCTTGA

mRNA sequence

ATGGCCGCCGTCTCCAACGCTTCCTTCATGGCTCTTGTAGCTGTTCTGTTCGCTGTACTCTCCATTGCCGTCGCGCAATCTGCTCAGTCTCCTGCTCCGGCACCGGCTTCTCCGGCACCGGCTTCTCCGGCTACCTCTGTCGTGCCGTCGTTGAGCTTTGCTTTCGTTGGTGCCTTCGTCGCTCTCGTCTTTGGATCTGCACTTAAGGCTTGA

Coding sequence (CDS)

ATGGCCGCCGTCTCCAACGCTTCCTTCATGGCTCTTGTAGCTGTTCTGTTCGCTGTACTCTCCATTGCCGTCGCGCAATCTGCTCAGTCTCCTGCTCCGGCACCGGCTTCTCCGGCACCGGCTTCTCCGGCTACCTCTGTCGTGCCGTCGTTGAGCTTTGCTTTCGTTGGTGCCTTCGTCGCTCTCGTCTTTGGATCTGCACTTAAGGCTTGA

Protein sequence

MAAVSNASFMALVAVLFAVLSIAVAQSAQSPAPAPASPAPASPATSVVPSLSFAFVGAFVALVFGSALKA
Homology
[Close]
BLAST of Cp4.1LG02g06260 vs. TrEMBL
Match: Q96504_CUCSA (CRG16 OS=Cucumis sativus GN=Csa_4G645890 PE=2 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 8.2e-14
Identity = 56/70 (80.00%), Postives = 60/70 (85.71%), Query Frame = 1 

Query: 1  MAAVSNASFMALVAVLFAVLSIAVAQSAQSPAPAPASPAPASPATSVVPSLSFAFVGAFV 60
          MAAVS  SFMALVAVLFAVLS+AVAQSA+SPA     P PASPA SVVPSLSFA VGAF+
Sbjct: 1  MAAVSKVSFMALVAVLFAVLSVAVAQSAESPA-----PPPASPANSVVPSLSFACVGAFL 60

Query: 61 ALVFGSALKA 71
          AL+FGSALKA
Sbjct: 61 ALLFGSALKA 65

[Close]
BLAST of Cp4.1LG02g06260 vs. NCBI nr
Match: gi|1669529|dbj|BAA08394.1| (CRG16 [Cucumis sativus])

HSP 1 Score: 84.0 bits (206), Expect = 1.2e-13
Identity = 56/70 (80.00%), Postives = 60/70 (85.71%), Query Frame = 1 

Query: 1  MAAVSNASFMALVAVLFAVLSIAVAQSAQSPAPAPASPAPASPATSVVPSLSFAFVGAFV 60
          MAAVS  SFMALVAVLFAVLS+AVAQSA+SPA     P PASPA SVVPSLSFA VGAF+
Sbjct: 1  MAAVSKVSFMALVAVLFAVLSVAVAQSAESPA-----PPPASPANSVVPSLSFACVGAFL 60

Query: 61 ALVFGSALKA 71
          AL+FGSALKA
Sbjct: 61 ALLFGSALKA 65

The following BLAST results are available for this feature:
BLAST of Cp4.1LG02g06260 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG02g06260 vs. TrEMBL
Match NameE-valueIdentityDescription
Q96504_CUCSA8.2e-1480.00CRG16 OS=Cucumis sativus GN=Csa_4G645890 PE=2 SV=1[more]
BLAST of Cp4.1LG02g06260 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG02g06260 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|1669529|dbj|BAA08394.1|1.2e-1380.00CRG16 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG02g06260.1Cp4.1LG02g06260.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG02g06260CsaV3_4G035470Cucumber (Chinese Long) v3cpecucB0701
Cp4.1LG02g06260Carg21745Silver-seed gourdcarcpeB0447
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG02g06260Cucumber (Chinese Long) v3cpecucB0663
Cp4.1LG02g06260Cucumber (Chinese Long) v3cpecucB0675
Cp4.1LG02g06260Cucumber (Chinese Long) v3cpecucB0737
Cp4.1LG02g06260Wax gourdcpewgoB0684
Cp4.1LG02g06260Wax gourdcpewgoB0725
Cp4.1LG02g06260Wax gourdcpewgoB0735
Cp4.1LG02g06260Wax gourdcpewgoB0741
Cp4.1LG02g06260Cucurbita pepo (Zucchini)cpecpeB125
Cp4.1LG02g06260Cucurbita pepo (Zucchini)cpecpeB459
Cp4.1LG02g06260Cucurbita pepo (Zucchini)cpecpeB471
Cp4.1LG02g06260Cucumber (Gy14) v1cgycpeB0921
Cp4.1LG02g06260Cucumber (Gy14) v1cgycpeB1043
Cp4.1LG02g06260Cucurbita maxima (Rimu)cmacpeB045
Cp4.1LG02g06260Cucurbita maxima (Rimu)cmacpeB192
Cp4.1LG02g06260Cucurbita maxima (Rimu)cmacpeB490
Cp4.1LG02g06260Cucurbita maxima (Rimu)cmacpeB780
Cp4.1LG02g06260Cucurbita moschata (Rifu)cmocpeB020
Cp4.1LG02g06260Cucurbita moschata (Rifu)cmocpeB166
Cp4.1LG02g06260Cucurbita moschata (Rifu)cmocpeB445
Cp4.1LG02g06260Cucurbita moschata (Rifu)cmocpeB734
Cp4.1LG02g06260Wild cucumber (PI 183967)cpecpiB541
Cp4.1LG02g06260Wild cucumber (PI 183967)cpecpiB566
Cp4.1LG02g06260Cucumber (Chinese Long) v2cpecuB539
Cp4.1LG02g06260Cucumber (Chinese Long) v2cpecuB564
Cp4.1LG02g06260Bottle gourd (USVL1VR-Ls)cpelsiB462
Cp4.1LG02g06260Bottle gourd (USVL1VR-Ls)cpelsiB477
Cp4.1LG02g06260Watermelon (Charleston Gray)cpewcgB511
Cp4.1LG02g06260Watermelon (Charleston Gray)cpewcgB528
Cp4.1LG02g06260Watermelon (97103) v1cpewmB541
Cp4.1LG02g06260Watermelon (97103) v1cpewmB561
Cp4.1LG02g06260Melon (DHL92) v3.5.1cpemeB508
Cp4.1LG02g06260Melon (DHL92) v3.5.1cpemeB538
Cp4.1LG02g06260Cucumber (Gy14) v2cgybcpeB224
Cp4.1LG02g06260Cucumber (Gy14) v2cgybcpeB539
Cp4.1LG02g06260Melon (DHL92) v3.6.1cpemedB605
Cp4.1LG02g06260Melon (DHL92) v3.6.1cpemedB638
Cp4.1LG02g06260Silver-seed gourdcarcpeB0139
Cp4.1LG02g06260Silver-seed gourdcarcpeB0265
Cp4.1LG02g06260Silver-seed gourdcarcpeB1082