Cp4.1LG02g01200 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG02g01200
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionTrafficking particle complex subunit 3
LocationCp4.1LG02 : 4789806 .. 4796100 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TGTCACACACTGTTCTTCACTTTTCTAGCGGCAACCAGCACAGCGTTTGGTAAAACTTTCCTTCGAGCTCAGTTCAGAATTCGGATCAATCATGCCTCCTGCTGGTCCTCGATCTGGTGATGCAATCTTCGCTAGCGTTGAGCGAGTGGTAAGCTTCACGAATTCAAGTCTCTATGTTGTTTTCTTTGATGTTTTGTTTGTGAGGGATTTTAAGAACATGGGAGGGAGGGAGGGAGGGAGGGAAGAGGTGAGAAATTTGATCGGATGTATCCAAAATGGTAAATTTGTCTTTGATTTGGATGTGTGTTTTTAGGTATTGATTTCATTTCTGTTTTTTGGGTTATCTTCTATTGATGAGAAGCTAAAGTTGAAATTGATGTAGAATGCCGAGCTGTTTACCTTGACTTATGGAGCGACTGTTCGTCAGTTGCTCACAGATCTGGAGGACGTTGAAGAAGTCAACAAACAGCTCGATCAGATGTAATCTTACTCCACTTCACTTGCTCTTTGATCCATTTTCCTTTTCAGAACATAGAATTCTGCATTTTTTTTTCCAGAGAACTACTTTTTTTTTTTTTTTTTTTTTTTTTTNTTTTATGATTTAGTTGGTTTTTCATTGGCTCTCATCTCAGTATAACCTCATGGGAAGCCGAAGGCAATTAAAGAATGTGTACGGAAATTTATACCTCTGTGGTATACAAAGCGTTCTAACGTAAACTGAAATGACTTGCATTATGCAAATTTCCTTACATTCGTTCCATAAGAGTCCTGCAGAAGCTTAATGCTTCTTACTATTATGAACTGTGCTCGAATTTTAGTTTGAGAGTTTAAATGTGCATGAGAACCACTATGGATTGACCTAATCTATTGGGGCATGTGAAAAAACACAAAGGGATTTTGGGAGAACGAGTTCAAACTCTTTAGTGACCACCTACCTAAGATAAAATAATACATACTTTTTTCATAATTGAATGTTGTAGTGTCAGACAATTATCCTATGAAAATGAAATAGTATGCATGGGAATGATACTCCTATTTGGTTGGGTGTTTTTATTTATTAATTTTAATGTTTTTTCTTGTATTCTGTGCTTTTATCTTCTGTAAGTATTTATTTATTTATTAAAAGGAAATAGTGTGCATGATGAGTACATACTAAGCATATTTTTTTTTTCAATACTTTCTACTTTCATTGATAAAAAAATGAAAATCTCTTTTGTGCGCAAACTTAATCTCCTTGTGCCAACACACATTACATTCAGTGGTATGATTGTTTCTTCAATTACTTTTCAGGGGCTATAATATTGGAATCCGGTTGATTGACGAGTTTCTTGCAAAATCCAATATCTCTAGATGTGTGGACTTCAAAGAGACAGCTGATGTGATTGCAAAGGTAGGTTGATGTTGAATACGTATTTGTATTAGTATGAAAACCTTACTCGGTTTAGGAAACTTTGACCAAACTTAGGTTGGTTCTATCTACGTCTTTTTGTTGTATTATTACTTACTATATTAATTCCTTTTATTTGTTTTTACGGTGGATAGTTTGTTGTTACCATTAAGTTGTTTGTTCAGTCCTGCTGTGTATAAATTTATAGTTGTTATCGGGACAAAATCTGCTTATAATAATAATAATAAAAACTATAATTTGGTCTATGCCAAATTGATATAAGATTTCCAAGATTTTGGTTTGATGGTTGGAAAGAAGCTGGTCAATCCAATGGGGGGAGATACTTCTTGAGTGGGCAAAGTGGTGTAGGTAATAACCGTCCTCTCATAAACATCAATGACGAAGGAATCATTGCTAGAAAATTGGATCAATCCTTGGTTAACCAAAATCACCTGCAACTTCAAGAAAACAGAGGACACAACAACTTGGGCCAGCAAAGAAAAAACACACCACCACCAAATCAGTAGCCTCCAATAAACAATCAAGAATTACAAATCATTCGTCAGGAACCACCAAGAATGTAAGTTACGGAATAAGACACTGCCAAGATCTTGATAATTTAAGTGATGAAGAAGAGGACAGTGACAGTGATGATGATAGAAAGACAAACAACCGGAAAACTTGAGAAAGGAACGATTACAAAATAAAAGTTGATCTCCTGAGTTTTAATAGAAAGTTGGATATTGAAATCTTCCTTGATTGGATTAAAAGGGTGGAGAGCTTCTTCAACTTCATGAATACACCAACAAAATGATAGTGATTTTCATGACATTTGGACCAACTGTTCAAATAATGTTAACTCTTATGATTACCGTCTTCTTGATGGTTTTTTACCCAAAGGGGATCAATTGTACTTGCCCCATACGTCCATTTGATAATCAGCAATCAAAGATTTACATTCAAGAGAATTGGGAGATCATTTTGGAAGGGATAAAACCATGGAATTCGTTTCATCCAATTATTTTCGGCCACAGCTTCTAAAAGATGTTCAGAATTTTATTAGAAGTTGCCTTATTTGTCAAACAGAAGAGGTAACTTCTAGCAATGATGAACTTTACATTCCTCTGCCAATACCAGCATCTACATGGGAGGACTTGTCAATGGACTTTGTCCAAGGATTTCCTCGAACTCAAATACGGTTTGATTCAGTTTTTGTAGTGGTGGACAGGCTTAGTAAAGTGACACACTTCCTTGCAAAAAGACTAATGATGCCTTGGATATGCTAGCCTTTTCTAGGGAAGTCGTGTGTCTTCATGGAATCCCTAAAACCAGTCTCGGATTGTGACATCAAAATTTTTAGTCATTTTTTGCGATCACTGGAAAAACATTGATACCACTCTCAAATACAGTACCACAAGCCATCCACAAACAGATAACCAAATCAGAGTTATTTATCGATCTTTGGGGAGTCTTATACATTGTCTCACTGCTGAAAACATCCTAAATAATGGAACTTTTCCTTAGCACAAGCTGAATTTGCCTTCAATCATGTGAAGAACGGATCCACAGGGAAGTTCCAATTGGAGAGAGTATATACTAAACTTCCTAGGTTAACTGTGGATCTTTCTATTTTACCTTCATCTGGAAACCGAATAAATGGCTGAACGGGTTGTTGAGCTACATAAGGAGGTTCAAACTCGTTGAAAAAGCTAACTTGGACTACAAGAAGACAGCTAATAGAAAAAGGCGAATTACTAACTTTGCAGTGGGCGATTTGGTTAAGGTTCATCTCAAGAATTCTCGTTTGCCAGTTGGTTCATATAACTAATTAAAGAACTGCAAGCTTGGACCTTTCAAAATCTTACAACGTCTTGATGCCAACTCTTATAAGATCATACATCCTTCTTACTTGCATTATTAATCCCATTTTCAATGTTGCTGATATTTTTCCGAATGAAGCACTTGAAAGGCTTTCCTTACCACCTAAACTCGAGGACATGTTTATTACTTACTTTATTAAATTTTTTTTACAGTGGTTAATTGGTTATTATCATTGAGTTGTTTGTCCAGCCTTGTTATGTATACATATAGGGTTGTTATGTACTTGAAGGAAAAAATTTCATTTAATTGAAACCACCATGGGTTGGCCTAGTGACCAAGAGGGGCGGTGTAAATAATAAAAGGCTAGAAGAGTATGAGTTCAAATCATCGTGGCCACCTATCTAAGATTTAACATGATATAAGTTACTTTGGAAACCAAATGTAATAGGGTTGGTGGTTATTTCGTGAGAATAGTCCAAGTGCGCGCAAGCTGATTCAGATACTCACAAGTATAAAAATAAATCTTCATTTAACTAAAAAACTTAATTTGGTCTGCACCACTTTTGGTCTGCTTCGTGAGGCACTATACAAATTTTTTTACCTGCAATTGAGGGGTTGCTTTTGAGGACAGTGTACATAGTCGGATGCAACAGGCCTTTTTGCAGTTAGCTAGAATGGATTTATCTACACGTCCATTTGAATTTTTGGTTCCACTGAATTTCATGTTCATGACTTGACCATTAAACAAGATTTCTCTTATATGGGAGGTCTTGATAAGAATGTTTGCCCCTCGGTTCACTTTACCTAGAGGAGCAAGGTAGCAAAAGGTAACGAGTAGTTGGTTATTGGATGTGGGAGCGAGCATTTCTAATGTGCGAGTCTGGGCCTTATCTAGTAATAACGGGCACAAATATAAGTTTCTGTTAGGGATCTGTTTGGGTGAGGGTATATGTATATATTAGACAGTGGCAGCAACCATGATTGGTTTATCTGGTATTATGGCCTAGAATATACCGTGTGAAATGAGAGTTCCAATCCTTTTGAAGTGCAGGGGATACTAGTTTATTTTCTTGAAAACTCATGTTTGTCACCTACCTAGGTATTAAAATCCTATGAGTTTGCTAACAACCAAATATCGTAAGACCAAGTGGCTGTCTCATGAAATTAGTTAAGGCAAACGCTCATGAATATATATACAGGTTGGTTCCCTTGTGTGCATGAGGCAATAGTCATTTTGAGACCTATCAGGCTTCAGAGCCCTGATTATGTTTGGTTTCAATTTTTTCCATGGTTTGATTAGAACGCTCGTAACATCTGTGGATTCGATAAATGTTAATAGTTTTCTTGCATGGCACATCCTCTTTGGACACCAACCCATCACCATGCCTCTTTCCAAAGAAAACATGTCACATTAGAGACAACTGCCAAGCCATGGATGTTTACAGAAATTTAACAGAACCACAATGACCAAATTGAAACATTTAAAGACATCCGAACTATTGCAGCCTCATACAAACTAATCATAGGACTAAAATGGTAATACTTACTGTTTTCTACATGACATTGTTTTGGAATGGATTTTGTTAATAGGTCGGTTTAAAAATGTTTTTGGGGGTGAATGCATCGGTGACCAACTGGGATGCTGAAGGCACATGCTGCAGTATTGTTCTGGAGGACAATCCATTAGTAGACTTTGTTGAGCTTCCTGATGCTTGCCAAGGTCTTCATTATTGCAACATCTTAAGTGGAGTCATCAGAGGAGCACTTGAGATGGTGAGTTCTCTGCATGTTTTCTTAATCTTGCTTAATATTATCACCCACCATTATGGCTCTCCTTGATTTTGTTCTTCTCAATTTGTTTCTTTCATTTCTTCGACTTCATATTATTCCTTGGAGAAAATGTTTTTCCTTCTGCTTCAAAATCATGATCTGCAAAACATTTATGTTATAAGGTCTTTTTCTTAAGCTCCCACTTTGCTTTGTGGGGAAACTTTTATTTTATTTCGGTTTTTAATAGAGAGAATTACTCAGTCTTCATAATCAAGATCAATATTGAATTTGTAAACATGAAAAATGTTGAGGTATATTTTCAAAACTTGGTTTATATGAATTTGTGTGTTTTAAAGCCATTTTCAAGACAGGGTTCCCAAATGCGGTTCCTGTAGATTTATAAAAGTTATTGCTTTCTAACACATTAAAATGAAAGTGGACATTAACTGTATTTGTGAAGGTACTGTTTCTGCCATATGATTGTACAAAATACATTAAATGTTCTACTCTACGACATCTTAAATTTAATTTCTATCCTTACTTTTAATTTTATCTCAAACTTTTATTTTGTTATATTAAACTTTGAACTTAAAAGGTTAAAGTCTACGTAAAACTAAATTGACAATTCACTTCAGAACTGGCACAGAATTCAACAAATAGAACAAATATTCACAATGAGGCAAGTATCCTAAACTCCCCAAATCTTCCTTAGAAAATCTAACTTACACAACCAAAAGAACCCACGTTGTAAGCAATCGTCTTCATTTTAAAGTTTTTAAAACAAAACTTGATTAGTTAAAAGATAAATTTTTTTCTTTGATCTTATAAATCTGGAGGCTGATATTTTGTTACTTCAGGTGTCCATGAAAACAGAAGTAACATGGCTACGAGACATGCTGAGAGGAGACGACATGTTCGAATTACAAGTAAAATTGCTGAAGCAAATTCCTGAGGAGTACCCATACAAAGACGACGAGTAGCATATCTCAACCAGGAAAAAGGAACTCTTTTATTTCATGTCATCTGCCAGTGTGTTCATTTGATCTAAAAACAATAGGTACATTTTTTGACTTCTCGAACTAATGTTACTTTATCAAAGTTATATTATAAATAGTCTTATGCGACAGTGATCAATTAAGTTCAATGTATATAGTAAAGGACTTGAAAAGGATTCACGTTTTGGTTGAGGTGCTTAGGATTTTGTACTGCGGTAGCTGAGTTGCTTGTGTGGTGTTTAAACTCTTTGGCCATTTATGGTTCATTTCTTATGGATTCAGTTGTCTGCTACTGGTCATTGGTTGCTGCATTTGTGATTGT

mRNA sequence

TGTCACACACTGTTCTTCACTTTTCTAGCGGCAACCAGCACAGCGTTTGGTAAAACTTTCCTTCGAGCTCAGTTCAGAATTCGGATCAATCATGCCTCCTGCTGGTCCTCGATCTGGTGATGCAATCTTCGCTAGCGTTGAGCGAGTGAATGCCGAGCTGTTTACCTTGACTTATGGAGCGACTGTTCGTCAGTTGCTCACAGATCTGGAGGACGTTGAAGAAGTCAACAAACAGCTCGATCAGATGGGCTATAATATTGGAATCCGGTTGATTGACGAGTTTCTTGCAAAATCCAATATCTCTAGATGTGTGGACTTCAAAGAGACAGCTGATGTGATTGCAAAGGTCGGTTTAAAAATGTTTTTGGGGGTGAATGCATCGGTGACCAACTGGGATGCTGAAGGCACATGCTGCAGTATTGTTCTGGAGGACAATCCATTAGTAGACTTTGTTGAGCTTCCTGATGCTTGCCAAGGTCTTCATTATTGCAACATCTTAAGTGGAGTCATCAGAGGAGCACTTGAGATGGTGTCCATGAAAACAGAAGTAACATGGCTACGAGACATGCTGAGAGGAGACGACATGTTCGAATTACAAGTAAAATTGCTGAAGCAAATTCCTGAGGAGTACCCATACAAAGACGACGAGTAGCATATCTCAACCAGGAAAAAGGAACTCTTTTATTTCATGTCATCTGCCAGTGTGTTCATTTGATCTAAAAACAATAGGTACATTTTTTGACTTCTCGAACTAATGTTACTTTATCAAAGTTATATTATAAATAGTCTTATGCGACAGTGATCAATTAAGTTCAATGTATATAGTAAAGGACTTGAAAAGGATTCACGTTTTGGTTGAGGTGCTTAGGATTTTGTACTGCGGTAGCTGAGTTGCTTGTGTGGTGTTTAAACTCTTTGGCCATTTATGGTTCATTTCTTATGGATTCAGTTGTCTGCTACTGGTCATTGGTTGCTGCATTTGTGATTGT

Coding sequence (CDS)

ATGCCTCCTGCTGGTCCTCGATCTGGTGATGCAATCTTCGCTAGCGTTGAGCGAGTGAATGCCGAGCTGTTTACCTTGACTTATGGAGCGACTGTTCGTCAGTTGCTCACAGATCTGGAGGACGTTGAAGAAGTCAACAAACAGCTCGATCAGATGGGCTATAATATTGGAATCCGGTTGATTGACGAGTTTCTTGCAAAATCCAATATCTCTAGATGTGTGGACTTCAAAGAGACAGCTGATGTGATTGCAAAGGTCGGTTTAAAAATGTTTTTGGGGGTGAATGCATCGGTGACCAACTGGGATGCTGAAGGCACATGCTGCAGTATTGTTCTGGAGGACAATCCATTAGTAGACTTTGTTGAGCTTCCTGATGCTTGCCAAGGTCTTCATTATTGCAACATCTTAAGTGGAGTCATCAGAGGAGCACTTGAGATGGTGTCCATGAAAACAGAAGTAACATGGCTACGAGACATGCTGAGAGGAGACGACATGTTCGAATTACAAGTAAAATTGCTGAAGCAAATTCCTGAGGAGTACCCATACAAAGACGACGAGTAG

Protein sequence

MPPAGPRSGDAIFASVERVNAELFTLTYGATVRQLLTDLEDVEEVNKQLDQMGYNIGIRLIDEFLAKSNISRCVDFKETADVIAKVGLKMFLGVNASVTNWDAEGTCCSIVLEDNPLVDFVELPDACQGLHYCNILSGVIRGALEMVSMKTEVTWLRDMLRGDDMFELQVKLLKQIPEEYPYKDDE
Homology
[Close]
BLAST of Cp4.1LG02g01200 vs. Swiss-Prot
Match: TPPC3_CHICK (Trafficking protein particle complex subunit 3 OS=Gallus gallus GN=TRAPPC3 PE=2 SV=1)

HSP 1 Score: 203.4 bits (516), Expect = 2.2e-51
Identity = 94/165 (56.97%), Postives = 129/165 (78.18%), Query Frame = 1 

Query: 17  ERVNAELFTLTYGATVRQLLTDLEDVEEVNKQLDQMGYNIGIRLIDEFLAKSNISRCVDF 76
           +++N+ELFTLTYGA V QL  D E+ E+VNKQLD+MGYNIG+RLI++FLA+SN+ RC DF
Sbjct: 12  KKMNSELFTLTYGALVTQLCKDYENDEDVNKQLDKMGYNIGVRLIEDFLARSNVGRCHDF 71

Query: 77  KETADVIAKVGLKMFLGVNASVTNWDAEGTCCSIVLEDNPLVDFVELPDACQGLHYCNIL 136
           +ETADVIAK+  KM+LG+  S+TNW   G   S++LE+NPLVDFVELPD    L Y N+L
Sbjct: 72  RETADVIAKIAFKMYLGITPSITNWSPGGDEFSLILENNPLVDFVELPDNHSSLIYSNLL 131

Query: 137 SGVIRGALEMVSMKTEVTWLRDMLRGDDMFELQVKLLKQIPEEYP 182
            GV+RGALEMV M  +V +++D L+GD + E+++K +++I +  P
Sbjct: 132 CGVLRGALEMVQMAVDVKFVQDTLKGDSVTEIRMKFIRRIEDNLP 176

[Close]
BLAST of Cp4.1LG02g01200 vs. Swiss-Prot
Match: TPPC3_MOUSE (Trafficking protein particle complex subunit 3 OS=Mus musculus GN=Trappc3 PE=1 SV=1)

HSP 1 Score: 200.3 bits (508), Expect = 1.9e-50
Identity = 93/165 (56.36%), Postives = 128/165 (77.58%), Query Frame = 1 

Query: 17  ERVNAELFTLTYGATVRQLLTDLEDVEEVNKQLDQMGYNIGIRLIDEFLAKSNISRCVDF 76
           +++++ELFTLTYGA V QL  D E+ E+VNKQLD+MGYNIG+RLI++FLA+SN+ RC DF
Sbjct: 12  KKMSSELFTLTYGALVTQLCKDYENDEDVNKQLDRMGYNIGVRLIEDFLARSNVGRCHDF 71

Query: 77  KETADVIAKVGLKMFLGVNASVTNWDAEGTCCSIVLEDNPLVDFVELPDACQGLHYCNIL 136
           +ETADVIAKV  KM+LG+  S+TNW   G   S++LE+NPLVDFVELPD    L Y N+L
Sbjct: 72  RETADVIAKVAFKMYLGITPSITNWSPAGDEFSLILENNPLVDFVELPDNHSALIYSNLL 131

Query: 137 SGVIRGALEMVSMKTEVTWLRDMLRGDDMFELQVKLLKQIPEEYP 182
            GV+RGALEMV M  E  +++D L+GD + E++++ +++I +  P
Sbjct: 132 CGVLRGALEMVQMAVEAKFVQDTLKGDGVTEIRMRFIRRIEDNLP 176

[Close]
BLAST of Cp4.1LG02g01200 vs. Swiss-Prot
Match: TPPC3_RAT (Trafficking protein particle complex subunit 3 OS=Rattus norvegicus GN=Trappc3 PE=2 SV=1)

HSP 1 Score: 200.3 bits (508), Expect = 1.9e-50
Identity = 93/165 (56.36%), Postives = 128/165 (77.58%), Query Frame = 1 

Query: 17  ERVNAELFTLTYGATVRQLLTDLEDVEEVNKQLDQMGYNIGIRLIDEFLAKSNISRCVDF 76
           +++++ELFTLTYGA V QL  D E+ E+VNKQLD+MGYNIG+RLI++FLA+SN+ RC DF
Sbjct: 12  KKMSSELFTLTYGALVTQLCKDYENDEDVNKQLDRMGYNIGVRLIEDFLARSNVGRCHDF 71

Query: 77  KETADVIAKVGLKMFLGVNASVTNWDAEGTCCSIVLEDNPLVDFVELPDACQGLHYCNIL 136
           +ETADVIAKV  KM+LG+  S+TNW   G   S++LE+NPLVDFVELPD    L Y N+L
Sbjct: 72  RETADVIAKVAFKMYLGITPSITNWSPAGDEFSLILENNPLVDFVELPDNHSALIYSNLL 131

Query: 137 SGVIRGALEMVSMKTEVTWLRDMLRGDDMFELQVKLLKQIPEEYP 182
            GV+RGALEMV M  E  +++D L+GD + E++++ +++I +  P
Sbjct: 132 CGVLRGALEMVQMAVEAKFVQDTLKGDGVTEIRMRFIRRIEDNLP 176

[Close]
BLAST of Cp4.1LG02g01200 vs. Swiss-Prot
Match: TPPC3_DICDI (Trafficking protein particle complex subunit 3 OS=Dictyostelium discoideum GN=trappc3 PE=3 SV=2)

HSP 1 Score: 199.9 bits (507), Expect = 2.4e-50
Identity = 102/174 (58.62%), Postives = 130/174 (74.71%), Query Frame = 1 

Query: 9   GDAIFASVERVNAELFTLTYGATVRQLLTDLEDVEEVNKQLDQMGYNIGIRLIDEFLAKS 68
           G+ +F  VE++N+ELFTLTYGA V QL+ D ED+E+VN +L+QMGYNIGIRLI+EFLAKS
Sbjct: 9   GNDVFNKVEKINSELFTLTYGALVTQLIKDYEDIEQVNIKLEQMGYNIGIRLIEEFLAKS 68

Query: 69  NISRCVDFKETADVIAKVGLKMFLGVNASVTNWDAEGTCCSIVLEDNPLVDFVELPDACQ 128
            I RC DF ETA+VIAKVG KMFLGVNA V +WDA      + +EDNPL+DFVELPD  +
Sbjct: 69  GIGRCSDFIETAEVIAKVGFKMFLGVNAHVGDWDANRKEFHLTIEDNPLIDFVELPDQYK 128

Query: 129 -GLHYCNILSGVIRGALEMVSMKTEVTWLRDMLRGDDMFELQVKLLKQIPEEYP 182
             L+Y NIL GV+RGALEMV MK + T+++  L  D   E++V L + + +  P
Sbjct: 129 HKLYYSNILCGVMRGALEMVQMKVKCTFVKCTLSDDSTSEIKVVLEEVLSDMIP 182

[Close]
BLAST of Cp4.1LG02g01200 vs. Swiss-Prot
Match: TPPC3_HUMAN (Trafficking protein particle complex subunit 3 OS=Homo sapiens GN=TRAPPC3 PE=1 SV=1)

HSP 1 Score: 198.7 bits (504), Expect = 5.4e-50
Identity = 92/165 (55.76%), Postives = 128/165 (77.58%), Query Frame = 1 

Query: 17  ERVNAELFTLTYGATVRQLLTDLEDVEEVNKQLDQMGYNIGIRLIDEFLAKSNISRCVDF 76
           +++++ELFTLTYGA V QL  D E+ E+VNKQLD+MG+NIG+RLI++FLA+SN+ RC DF
Sbjct: 12  KKMSSELFTLTYGALVTQLCKDYENDEDVNKQLDKMGFNIGVRLIEDFLARSNVGRCHDF 71

Query: 77  KETADVIAKVGLKMFLGVNASVTNWDAEGTCCSIVLEDNPLVDFVELPDACQGLHYCNIL 136
           +ETADVIAKV  KM+LG+  S+TNW   G   S++LE+NPLVDFVELPD    L Y N+L
Sbjct: 72  RETADVIAKVAFKMYLGITPSITNWSPAGDEFSLILENNPLVDFVELPDNHSSLIYSNLL 131

Query: 137 SGVIRGALEMVSMKTEVTWLRDMLRGDDMFELQVKLLKQIPEEYP 182
            GV+RGALEMV M  E  +++D L+GD + E++++ +++I +  P
Sbjct: 132 CGVLRGALEMVQMAVEAKFVQDTLKGDGVTEIRMRFIRRIEDNLP 176

[Close]
BLAST of Cp4.1LG02g01200 vs. TrEMBL
Match: A0A0A0LAM3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G419290 PE=4 SV=1)

HSP 1 Score: 367.5 bits (942), Expect = 9.8e-99
Identity = 180/186 (96.77%), Postives = 183/186 (98.39%), Query Frame = 1 

Query: 1   MPPAGPRSGDAIFASVERVNAELFTLTYGATVRQLLTDLEDVEEVNKQLDQMGYNIGIRL 60
           MP AGPRSGDAIFASVERVNAELFTLTYGATVRQLLTDLE+VEEVNKQLDQMGYNIGIRL
Sbjct: 1   MPTAGPRSGDAIFASVERVNAELFTLTYGATVRQLLTDLEEVEEVNKQLDQMGYNIGIRL 60

Query: 61  IDEFLAKSNISRCVDFKETADVIAKVGLKMFLGVNASVTNWDAEGTCCSIVLEDNPLVDF 120
           IDEFLAKSNISRCVDFKETADVIAKVGLKMFLGVNA+VTNWDAEGTCCSIVLEDNPLVDF
Sbjct: 61  IDEFLAKSNISRCVDFKETADVIAKVGLKMFLGVNATVTNWDAEGTCCSIVLEDNPLVDF 120

Query: 121 VELPDACQGLHYCNILSGVIRGALEMVSMKTEVTWLRDMLRGDDMFELQVKLLKQIPEEY 180
           VELPD CQGLHYCNILSGVIRGALEMVSMKTEVTWLRDMLRGDD FELQVKLLKQ+PEEY
Sbjct: 121 VELPDTCQGLHYCNILSGVIRGALEMVSMKTEVTWLRDMLRGDDSFELQVKLLKQVPEEY 180

Query: 181 PYKDDE 187
           PYKDDE
Sbjct: 181 PYKDDE 186

[Close]
BLAST of Cp4.1LG02g01200 vs. TrEMBL
Match: M5WJ68_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012038mg PE=4 SV=1)

HSP 1 Score: 354.0 bits (907), Expect = 1.1e-94
Identity = 168/186 (90.32%), Postives = 180/186 (96.77%), Query Frame = 1 

Query: 1   MPPAGPRSGDAIFASVERVNAELFTLTYGATVRQLLTDLEDVEEVNKQLDQMGYNIGIRL 60
           MPP GPRSGDAIFA+VERVNAELFTLTYGA VRQLLTDLE+VEEVNKQLDQMGYNIGIRL
Sbjct: 1   MPPVGPRSGDAIFANVERVNAELFTLTYGAIVRQLLTDLEEVEEVNKQLDQMGYNIGIRL 60

Query: 61  IDEFLAKSNISRCVDFKETADVIAKVGLKMFLGVNASVTNWDAEGTCCSIVLEDNPLVDF 120
           IDEFLAKSN+SRCVDFKETA+VIAK+G KMFLGV ASVTNWDA+GTCCSIVLEDNPLVDF
Sbjct: 61  IDEFLAKSNVSRCVDFKETAEVIAKIGFKMFLGVTASVTNWDADGTCCSIVLEDNPLVDF 120

Query: 121 VELPDACQGLHYCNILSGVIRGALEMVSMKTEVTWLRDMLRGDDMFELQVKLLKQIPEEY 180
           VELPD CQGL+YCNILSGV+RGALEMVSMKTE++W+RDMLRGDD FELQVKLLKQ+PEEY
Sbjct: 121 VELPDTCQGLYYCNILSGVVRGALEMVSMKTEISWIRDMLRGDDAFELQVKLLKQVPEEY 180

Query: 181 PYKDDE 187
           PYKDDE
Sbjct: 181 PYKDDE 186

[Close]
BLAST of Cp4.1LG02g01200 vs. TrEMBL
Match: A0A061EXA3_THECC (Transport protein particle (TRAPP) component isoform 1 OS=Theobroma cacao GN=TCM_024391 PE=4 SV=1)

HSP 1 Score: 351.7 bits (901), Expect = 5.6e-94
Identity = 170/186 (91.40%), Postives = 179/186 (96.24%), Query Frame = 1 

Query: 1   MPPAGPRSGDAIFASVERVNAELFTLTYGATVRQLLTDLEDVEEVNKQLDQMGYNIGIRL 60
           M PA PRSGDAIFASVERVNAELFTLTYGA VRQLLTDLE+VEEVNKQLDQMGYNIGIRL
Sbjct: 1   MAPAAPRSGDAIFASVERVNAELFTLTYGAIVRQLLTDLEEVEEVNKQLDQMGYNIGIRL 60

Query: 61  IDEFLAKSNISRCVDFKETADVIAKVGLKMFLGVNASVTNWDAEGTCCSIVLEDNPLVDF 120
           IDEFLAKSN+SRCVDFKETA+VIAKVG KMFLGV ASVTNWDA+GTCCSIVLEDNPLVDF
Sbjct: 61  IDEFLAKSNVSRCVDFKETAEVIAKVGFKMFLGVTASVTNWDADGTCCSIVLEDNPLVDF 120

Query: 121 VELPDACQGLHYCNILSGVIRGALEMVSMKTEVTWLRDMLRGDDMFELQVKLLKQIPEEY 180
           VELPD CQGL+YCNILSGVIRG+LEMVSMKTEVTW+RDMLRGDD +ELQVKLLKQ+PEEY
Sbjct: 121 VELPDTCQGLYYCNILSGVIRGSLEMVSMKTEVTWIRDMLRGDDAYELQVKLLKQVPEEY 180

Query: 181 PYKDDE 187
           PYKDDE
Sbjct: 181 PYKDDE 186

[Close]
BLAST of Cp4.1LG02g01200 vs. TrEMBL
Match: A0A0D2S1L4_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_006G132900 PE=4 SV=1)

HSP 1 Score: 351.3 bits (900), Expect = 7.3e-94
Identity = 169/186 (90.86%), Postives = 179/186 (96.24%), Query Frame = 1 

Query: 1   MPPAGPRSGDAIFASVERVNAELFTLTYGATVRQLLTDLEDVEEVNKQLDQMGYNIGIRL 60
           MPPA PRSGDAIFASVERVNAELFTLTYGA VRQLLTDLE+VEEVNKQLDQMGYNIGIRL
Sbjct: 1   MPPAAPRSGDAIFASVERVNAELFTLTYGAIVRQLLTDLEEVEEVNKQLDQMGYNIGIRL 60

Query: 61  IDEFLAKSNISRCVDFKETADVIAKVGLKMFLGVNASVTNWDAEGTCCSIVLEDNPLVDF 120
           IDEFLAKSN+SRCVDFKETA++IAKVG KMFLGV ASV NWDA+GTCCSIVLEDNPLVDF
Sbjct: 61  IDEFLAKSNVSRCVDFKETAEMIAKVGFKMFLGVTASVMNWDADGTCCSIVLEDNPLVDF 120

Query: 121 VELPDACQGLHYCNILSGVIRGALEMVSMKTEVTWLRDMLRGDDMFELQVKLLKQIPEEY 180
           VELPD CQGL+YCNILSGVIRGALEMV+MKTEVTW+RDMLRGDD +ELQVKLLKQ+PEEY
Sbjct: 121 VELPDTCQGLYYCNILSGVIRGALEMVAMKTEVTWIRDMLRGDDAYELQVKLLKQVPEEY 180

Query: 181 PYKDDE 187
           PYKDDE
Sbjct: 181 PYKDDE 186

[Close]
BLAST of Cp4.1LG02g01200 vs. TrEMBL
Match: A0A0B0PZJ7_GOSAR (Trafficking particle complex subunit 3 OS=Gossypium arboreum GN=F383_16359 PE=4 SV=1)

HSP 1 Score: 351.3 bits (900), Expect = 7.3e-94
Identity = 169/186 (90.86%), Postives = 179/186 (96.24%), Query Frame = 1 

Query: 1   MPPAGPRSGDAIFASVERVNAELFTLTYGATVRQLLTDLEDVEEVNKQLDQMGYNIGIRL 60
           MPPA PRSGDAIFASVERVNAELFTLTYGA VRQLLTDLE+VEEVNKQLDQMGYNIGIRL
Sbjct: 1   MPPAAPRSGDAIFASVERVNAELFTLTYGAIVRQLLTDLEEVEEVNKQLDQMGYNIGIRL 60

Query: 61  IDEFLAKSNISRCVDFKETADVIAKVGLKMFLGVNASVTNWDAEGTCCSIVLEDNPLVDF 120
           IDEFLAKSN+SRCVDFKETA++IAKVG KMFLGV ASV NWDA+GTCCSIVLEDNPLVDF
Sbjct: 61  IDEFLAKSNVSRCVDFKETAEMIAKVGFKMFLGVTASVMNWDADGTCCSIVLEDNPLVDF 120

Query: 121 VELPDACQGLHYCNILSGVIRGALEMVSMKTEVTWLRDMLRGDDMFELQVKLLKQIPEEY 180
           VELPD CQGL+YCNILSGVIRGALEMV+MKTEVTW+RDMLRGDD +ELQVKLLKQ+PEEY
Sbjct: 121 VELPDTCQGLYYCNILSGVIRGALEMVAMKTEVTWIRDMLRGDDAYELQVKLLKQVPEEY 180

Query: 181 PYKDDE 187
           PYKDDE
Sbjct: 181 PYKDDE 186

[Close]
BLAST of Cp4.1LG02g01200 vs. TAIR10
Match: AT5G54750.2 (AT5G54750.2 Transport protein particle (TRAPP) component)

HSP 1 Score: 328.6 bits (841), Expect = 2.6e-90
Identity = 160/199 (80.40%), Postives = 176/199 (88.44%), Query Frame = 1 

Query: 1   MPPAGPRSGDAIFASVERVNAELFTLTYGATVRQLLTDLEDVEEVNKQLDQM-------- 60
           M P GPRSGDAIF+S++RVNAELFTLTYGA VRQLLTDLE+VEEVNKQLDQM        
Sbjct: 1   MAPVGPRSGDAIFSSIDRVNAELFTLTYGAIVRQLLTDLEEVEEVNKQLDQMYSSSTIYV 60

Query: 61  -----GYNIGIRLIDEFLAKSNISRCVDFKETADVIAKVGLKMFLGVNASVTNWDAEGTC 120
                GYNIGIRLIDEFLAKS +SRCVDFKETA++IAKVG KMFLGV ASVT+WD++GTC
Sbjct: 61  DSLPWGYNIGIRLIDEFLAKSGVSRCVDFKETAEMIAKVGFKMFLGVTASVTSWDSDGTC 120

Query: 121 CSIVLEDNPLVDFVELPDACQGLHYCNILSGVIRGALEMVSMKTEVTWLRDMLRGDDMFE 180
           CSI+LEDNPLVDFVELPD CQGL+YCN+LSGVIRGALEMVSMKTEVTW RD+LRGDD +E
Sbjct: 121 CSIILEDNPLVDFVELPDTCQGLYYCNVLSGVIRGALEMVSMKTEVTWTRDVLRGDDAYE 180

Query: 181 LQVKLLKQIPEEYPYKDDE 187
           LQVKLLKQ+ EEYPYKDDE
Sbjct: 181 LQVKLLKQVAEEYPYKDDE 199

[Close]
BLAST of Cp4.1LG02g01200 vs. NCBI nr
Match: gi|659109089|ref|XP_008454543.1| (PREDICTED: trafficking protein particle complex subunit 3 [Cucumis melo])

HSP 1 Score: 367.5 bits (942), Expect = 1.4e-98
Identity = 180/186 (96.77%), Postives = 183/186 (98.39%), Query Frame = 1 

Query: 1   MPPAGPRSGDAIFASVERVNAELFTLTYGATVRQLLTDLEDVEEVNKQLDQMGYNIGIRL 60
           MP AGPRSGDAIFASVERVNAELFTLTYGATVRQLLTDLE+VEEVNKQLDQMGYNIGIRL
Sbjct: 1   MPTAGPRSGDAIFASVERVNAELFTLTYGATVRQLLTDLEEVEEVNKQLDQMGYNIGIRL 60

Query: 61  IDEFLAKSNISRCVDFKETADVIAKVGLKMFLGVNASVTNWDAEGTCCSIVLEDNPLVDF 120
           IDEFLAKSNISRCVDFKETADVIAKVGLKMFLGVNA+VTNWDAEGTCCSIVLEDNPLVDF
Sbjct: 61  IDEFLAKSNISRCVDFKETADVIAKVGLKMFLGVNATVTNWDAEGTCCSIVLEDNPLVDF 120

Query: 121 VELPDACQGLHYCNILSGVIRGALEMVSMKTEVTWLRDMLRGDDMFELQVKLLKQIPEEY 180
           VELPD CQGLHYCNILSGVIRGALEMVSMKTEVTWLRDMLRGDD FELQVKLLKQ+PEEY
Sbjct: 121 VELPDTCQGLHYCNILSGVIRGALEMVSMKTEVTWLRDMLRGDDSFELQVKLLKQVPEEY 180

Query: 181 PYKDDE 187
           PYKDDE
Sbjct: 181 PYKDDE 186

[Close]
BLAST of Cp4.1LG02g01200 vs. NCBI nr
Match: gi|657987684|ref|XP_008386003.1| (PREDICTED: trafficking protein particle complex subunit 3 [Malus domestica])

HSP 1 Score: 356.3 bits (913), Expect = 3.3e-95
Identity = 171/186 (91.94%), Postives = 181/186 (97.31%), Query Frame = 1 

Query: 1   MPPAGPRSGDAIFASVERVNAELFTLTYGATVRQLLTDLEDVEEVNKQLDQMGYNIGIRL 60
           MPPAGPRSGDAIFA+VERVNAELFTLTYGA VRQLLTDLE+VEEVNKQLDQMGYNIGIRL
Sbjct: 1   MPPAGPRSGDAIFANVERVNAELFTLTYGAIVRQLLTDLEEVEEVNKQLDQMGYNIGIRL 60

Query: 61  IDEFLAKSNISRCVDFKETADVIAKVGLKMFLGVNASVTNWDAEGTCCSIVLEDNPLVDF 120
           IDEFLAKSN+SRCVDFKETA+VIAKVG KMFLGV ASVTNWDA+GTCCSIVLEDNPLVDF
Sbjct: 61  IDEFLAKSNVSRCVDFKETAEVIAKVGFKMFLGVTASVTNWDADGTCCSIVLEDNPLVDF 120

Query: 121 VELPDACQGLHYCNILSGVIRGALEMVSMKTEVTWLRDMLRGDDMFELQVKLLKQIPEEY 180
           VELPD CQGL+YCNILSGV+RGALEMVSMKTE++W+RDMLRGDD FELQVKLLKQIPEEY
Sbjct: 121 VELPDTCQGLYYCNILSGVVRGALEMVSMKTEISWIRDMLRGDDAFELQVKLLKQIPEEY 180

Query: 181 PYKDDE 187
           PYKDDE
Sbjct: 181 PYKDDE 186

[Close]
BLAST of Cp4.1LG02g01200 vs. NCBI nr
Match: gi|694316156|ref|XP_009378886.1| (PREDICTED: trafficking protein particle complex subunit 3-like [Pyrus x bretschneideri])

HSP 1 Score: 355.9 bits (912), Expect = 4.2e-95
Identity = 170/186 (91.40%), Postives = 181/186 (97.31%), Query Frame = 1 

Query: 1   MPPAGPRSGDAIFASVERVNAELFTLTYGATVRQLLTDLEDVEEVNKQLDQMGYNIGIRL 60
           MPPAGPRSGDAIFA++ERVNAELFTLTYGA VRQLLTDLE+VEEVNKQLDQMGYNIGIRL
Sbjct: 1   MPPAGPRSGDAIFANIERVNAELFTLTYGAIVRQLLTDLEEVEEVNKQLDQMGYNIGIRL 60

Query: 61  IDEFLAKSNISRCVDFKETADVIAKVGLKMFLGVNASVTNWDAEGTCCSIVLEDNPLVDF 120
           IDEFLAKSN+SRCVDFKETA+VIAKVG KMFLGV ASVTNWDA+GTCCSIVLEDNPLVDF
Sbjct: 61  IDEFLAKSNVSRCVDFKETAEVIAKVGFKMFLGVTASVTNWDADGTCCSIVLEDNPLVDF 120

Query: 121 VELPDACQGLHYCNILSGVIRGALEMVSMKTEVTWLRDMLRGDDMFELQVKLLKQIPEEY 180
           VELPD CQGL+YCNILSGV+RGALEMVSMKTE++W+RDMLRGDD FELQVKLLKQIPEEY
Sbjct: 121 VELPDTCQGLYYCNILSGVVRGALEMVSMKTEISWIRDMLRGDDAFELQVKLLKQIPEEY 180

Query: 181 PYKDDE 187
           PYKDDE
Sbjct: 181 PYKDDE 186

[Close]
BLAST of Cp4.1LG02g01200 vs. NCBI nr
Match: gi|470116351|ref|XP_004294346.1| (PREDICTED: trafficking protein particle complex subunit 3 [Fragaria vesca subsp. vesca])

HSP 1 Score: 355.5 bits (911), Expect = 5.5e-95
Identity = 169/186 (90.86%), Postives = 180/186 (96.77%), Query Frame = 1 

Query: 1   MPPAGPRSGDAIFASVERVNAELFTLTYGATVRQLLTDLEDVEEVNKQLDQMGYNIGIRL 60
           MPP GPRSGDAIFA+VERVNAELFTLTYGA VRQLLTDLE+VEEVNKQLDQMGYNIGIRL
Sbjct: 1   MPPVGPRSGDAIFANVERVNAELFTLTYGAIVRQLLTDLEEVEEVNKQLDQMGYNIGIRL 60

Query: 61  IDEFLAKSNISRCVDFKETADVIAKVGLKMFLGVNASVTNWDAEGTCCSIVLEDNPLVDF 120
           IDEFLAKSN+SRCVDFKETA+VIAK+G KMFLGV ASVTNWDA+GTCCSIVLEDNPLVDF
Sbjct: 61  IDEFLAKSNVSRCVDFKETAEVIAKIGFKMFLGVTASVTNWDADGTCCSIVLEDNPLVDF 120

Query: 121 VELPDACQGLHYCNILSGVIRGALEMVSMKTEVTWLRDMLRGDDMFELQVKLLKQIPEEY 180
           VELPD CQGL+YCNILSGV+RGALEMVSMKTE+TW+RDMLRGDD FELQVKLLKQ+PEEY
Sbjct: 121 VELPDTCQGLYYCNILSGVVRGALEMVSMKTEITWIRDMLRGDDAFELQVKLLKQVPEEY 180

Query: 181 PYKDDE 187
           PYKDDE
Sbjct: 181 PYKDDE 186

[Close]
BLAST of Cp4.1LG02g01200 vs. NCBI nr
Match: gi|694353301|ref|XP_009358109.1| (PREDICTED: trafficking protein particle complex subunit 3-like [Pyrus x bretschneideri])

HSP 1 Score: 355.5 bits (911), Expect = 5.5e-95
Identity = 170/186 (91.40%), Postives = 180/186 (96.77%), Query Frame = 1 

Query: 1   MPPAGPRSGDAIFASVERVNAELFTLTYGATVRQLLTDLEDVEEVNKQLDQMGYNIGIRL 60
           MPP GPRSGDAIFAS+ERVNAELFTLTYGA VRQLLTDLE+VEEVNKQLDQMGYNIGIRL
Sbjct: 1   MPPVGPRSGDAIFASIERVNAELFTLTYGAIVRQLLTDLEEVEEVNKQLDQMGYNIGIRL 60

Query: 61  IDEFLAKSNISRCVDFKETADVIAKVGLKMFLGVNASVTNWDAEGTCCSIVLEDNPLVDF 120
           IDEFLAKSN+SRCVDFKETA+VIAKVG KMFLGV ASVTNWDA+GTCCSIVLEDNPLVDF
Sbjct: 61  IDEFLAKSNVSRCVDFKETAEVIAKVGFKMFLGVTASVTNWDADGTCCSIVLEDNPLVDF 120

Query: 121 VELPDACQGLHYCNILSGVIRGALEMVSMKTEVTWLRDMLRGDDMFELQVKLLKQIPEEY 180
           VELPD CQGL+YCNILSGV+RGALEMVSMKTE++W+RDMLRGDD FELQVKLLKQIPEEY
Sbjct: 121 VELPDTCQGLYYCNILSGVVRGALEMVSMKTEISWIRDMLRGDDAFELQVKLLKQIPEEY 180

Query: 181 PYKDDE 187
           PYKDDE
Sbjct: 181 PYKDDE 186

The following BLAST results are available for this feature:
BLAST of Cp4.1LG02g01200 vs. Swiss-Prot
Match NameE-valueIdentityDescription
TPPC3_CHICK2.2e-5156.97Trafficking protein particle complex subunit 3 OS=Gallus gallus GN=TRAPPC3 PE=2 ... [more]
TPPC3_MOUSE1.9e-5056.36Trafficking protein particle complex subunit 3 OS=Mus musculus GN=Trappc3 PE=1 S... [more]
TPPC3_RAT1.9e-5056.36Trafficking protein particle complex subunit 3 OS=Rattus norvegicus GN=Trappc3 P... [more]
TPPC3_DICDI2.4e-5058.62Trafficking protein particle complex subunit 3 OS=Dictyostelium discoideum GN=tr... [more]
TPPC3_HUMAN5.4e-5055.76Trafficking protein particle complex subunit 3 OS=Homo sapiens GN=TRAPPC3 PE=1 S... [more]
BLAST of Cp4.1LG02g01200 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LAM3_CUCSA9.8e-9996.77Uncharacterized protein OS=Cucumis sativus GN=Csa_3G419290 PE=4 SV=1[more]
M5WJ68_PRUPE1.1e-9490.32Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012038mg PE=4 SV=1[more]
A0A061EXA3_THECC5.6e-9491.40Transport protein particle (TRAPP) component isoform 1 OS=Theobroma cacao GN=TCM... [more]
A0A0D2S1L4_GOSRA7.3e-9490.86Uncharacterized protein OS=Gossypium raimondii GN=B456_006G132900 PE=4 SV=1[more]
A0A0B0PZJ7_GOSAR7.3e-9490.86Trafficking particle complex subunit 3 OS=Gossypium arboreum GN=F383_16359 PE=4 ... [more]
BLAST of Cp4.1LG02g01200 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G54750.22.6e-9080.40 Transport protein particle (TRAPP) component[more]
BLAST of Cp4.1LG02g01200 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659109089|ref|XP_008454543.1|1.4e-9896.77PREDICTED: trafficking protein particle complex subunit 3 [Cucumis melo][more]
gi|657987684|ref|XP_008386003.1|3.3e-9591.94PREDICTED: trafficking protein particle complex subunit 3 [Malus domestica][more]
gi|694316156|ref|XP_009378886.1|4.2e-9591.40PREDICTED: trafficking protein particle complex subunit 3-like [Pyrus x bretschn... [more]
gi|470116351|ref|XP_004294346.1|5.5e-9590.86PREDICTED: trafficking protein particle complex subunit 3 [Fragaria vesca subsp.... [more]
gi|694353301|ref|XP_009358109.1|5.5e-9591.40PREDICTED: trafficking protein particle complex subunit 3-like [Pyrus x bretschn... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0006888ER to Golgi vesicle-mediated transport
Vocabulary: INTERPRO
TermDefinition
IPR024096NO_sig/Golgi_transp_ligand-bd
IPR016721Bet3
IPR007194TRAPP_component
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006888 ER to Golgi vesicle-mediated transport
biological_process GO:0048193 Golgi vesicle transport
cellular_component GO:0005575 cellular_component
cellular_component GO:0005783 endoplasmic reticulum
cellular_component GO:0005794 Golgi apparatus
cellular_component GO:0030008 TRAPP complex
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG02g01200.1Cp4.1LG02g01200.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007194Transport protein particle (TRAPP) componentPFAMPF04051TRAPPcoord: 24..170
score: 4.9
IPR016721Bet3 familyPIRPIRSF018293TRAPP_1_Bet3coord: 4..185
score: 2.6
IPR016721Bet3 familyPANTHERPTHR13048TRAFFICKING PROTEIN PARTICLE COMPLEX SUBUNIT 3coord: 2..185
score: 2.6E
IPR024096NO signalling/Golgi transport ligand-binding domainunknownSSF111126Ligand-binding domain in the NO signalling and Golgi transportcoord: 18..175
score: 6.8
NoneNo IPR availableunknownCoilCoilcoord: 32..52
scor
NoneNo IPR availableGENE3DG3DSA:3.30.1380.20coord: 19..175
score: 2.1

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG02g01200CmaCh09G009300Cucurbita maxima (Rimu)cmacpeB046
Cp4.1LG02g01200CmaCh01G011490Cucurbita maxima (Rimu)cmacpeB490
Cp4.1LG02g01200CmoCh09G009270Cucurbita moschata (Rifu)cmocpeB021
Cp4.1LG02g01200CmoCh01G012010Cucurbita moschata (Rifu)cmocpeB448
Cp4.1LG02g01200Cla004209Watermelon (97103) v1cpewmB569
Cp4.1LG02g01200Csa3G419290Cucumber (Chinese Long) v2cpecuB549
Cp4.1LG02g01200MELO3C018102Melon (DHL92) v3.5.1cpemeB519
Cp4.1LG02g01200ClCG05G014740Watermelon (Charleston Gray)cpewcgB519
Cp4.1LG02g01200CSPI03G23350Wild cucumber (PI 183967)cpecpiB549
Cp4.1LG02g01200Lsi04G012360Bottle gourd (USVL1VR-Ls)cpelsiB464
Cp4.1LG02g01200MELO3C018102.2Melon (DHL92) v3.6.1cpemedB619
Cp4.1LG02g01200CsaV3_3G023130Cucumber (Chinese Long) v3cpecucB0688
Cp4.1LG02g01200Bhi09G001633Wax gourdcpewgoB0728
Cp4.1LG02g01200CsGy3G022360Cucumber (Gy14) v2cgybcpeB382
Cp4.1LG02g01200Carg05646Silver-seed gourdcarcpeB1420
Cp4.1LG02g01200Carg12799Silver-seed gourdcarcpeB1254
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Cp4.1LG02g01200Cp4.1LG06g08980Cucurbita pepo (Zucchini)cpecpeB460
The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG02g01200Silver-seed gourdcarcpeB0046
Cp4.1LG02g01200Cucumber (Chinese Long) v3cpecucB0683
Cp4.1LG02g01200Cucurbita pepo (Zucchini)cpecpeB050
Cp4.1LG02g01200Cucurbita pepo (Zucchini)cpecpeB240
Cp4.1LG02g01200Cucurbita pepo (Zucchini)cpecpeB437
Cp4.1LG02g01200Cucumber (Gy14) v1cgycpeB0701
Cp4.1LG02g01200Cucumber (Gy14) v1cgycpeB0929
Cp4.1LG02g01200Cucurbita maxima (Rimu)cmacpeB356
Cp4.1LG02g01200Cucurbita moschata (Rifu)cmocpeB409
Cp4.1LG02g01200Watermelon (Charleston Gray)cpewcgB506
Cp4.1LG02g01200Watermelon (97103) v1cpewmB553
Cp4.1LG02g01200Cucumber (Gy14) v2cgybcpeB228
Cp4.1LG02g01200Melon (DHL92) v3.6.1cpemedB617