Cp4.1LG01g26140 (gene) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG01g26140
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	Electron carrier/protein disulfide oxidoreductase
Location	Cp4.1LG01 : 21087344 .. 21088211 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAGCAGCTCGAAGTTTCTTAAGAGACGGAGGACTTGTCCTCGATCTGAATAACAATGTTGCATCAGTTAATATGATTCTTAAATGGTAAGAAAGAAATAGTTCCTCAGAAACCACCTGTTTTCTTGCAAACATTTACTAATATTTTAGTTTCCATCATTGCGTTATAAAATTTGCGTTTAGCACCCCCTACTTTAGATGGACTTGCTCCCTTCCCTTAGTTATACAGACAGTCATCATTTCATGGTGAAAATTTTGAAGGTATATATTATATATCAAGAACTCTCTTGGAGATTTATAGGAAACCCTGGTAGTACGTAGATCGTTGGGCGTTGAACAGTATTGTACCAAGGCCTTGGTTCAATCTTTTGGATGGAAATCTATATAAAACAACACTCTTTGACATCTCATGGAGGTTGCATTGGAGATGATACAACTTCCCATGAATCATACCCCCTAATATCATGGATAATTAAAATTGTGTTAGCCATATGTTTATGATAACTGGAGCTTTCCCAACTTTACTTGGCCTGGTCGTAATTCTTTTAAATACTGTTCAAAACGCAGTTTATTGTTTTCATGTAAGCCAGAGTTCAGGAATCAACCATACGTGTTGGTGGAATATATTTAAAACATTACATCCAAGACATTAGACAGTTTAGTGATGTTTTATTTTTTATTTTTTATTGTTATAATATTTTTCTTTGCTCAGGTTTAGCACCGACTTTGGAAAGAACGAGCAAGAAGTCTTGAAGCATGTAGCAAACTACTTGAAACCAGATGATTCACAAGCGCTGCTTGAATTGCTTGACAGTTCTCAGTTGAAGGTATTTTATCAAGCATACGATTGGGGTTTGAACTTTTAA

mRNA sequence

ATGGAAGCAGCTCGAAGTTTCTTAAGAGACGGAGGACTTGTCCTCGATCTGAATAACAATGTTGCATCAGTTAATATGATTCTTAAATGGTTTAGCACCGACTTTGGAAAGAACGAGCAAGAAGTCTTGAAGCATGTAGCAAACTACTTGAAACCAGATGATTCACAAGCGCTGCTTGAATTGCTTGACAGTTCTCAGTTGAAGGTATTTTATCAAGCATACGATTGGGGTTTGAACTTTTAA

Coding sequence (CDS)

ATGGAAGCAGCTCGAAGTTTCTTAAGAGACGGAGGACTTGTCCTCGATCTGAATAACAATGTTGCATCAGTTAATATGATTCTTAAATGGTTTAGCACCGACTTTGGAAAGAACGAGCAAGAAGTCTTGAAGCATGTAGCAAACTACTTGAAACCAGATGATTCACAAGCGCTGCTTGAATTGCTTGACAGTTCTCAGTTGAAGGTATTTTATCAAGCATACGATTGGGGTTTGAACTTTTAA

Protein sequence

MEAARSFLRDGGLVLDLNNNVASVNMILKWFSTDFGKNEQEVLKHVANYLKPDDSQALLELLDSSQLKVFYQAYDWGLNF

Homology

[Close]

BLAST of Cp4.1LG01g26140 vs. TrEMBL
Match: A0A0A0LQQ2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G403720 PE=4 SV=1)

HSP 1 Score: 141.7 bits (356), Expect = 3.8e-31
Identity = 66/79 (83.54%), Postives = 71/79 (89.87%), Query Frame = 1


Query: 1   MEAARSFLRDGGLVLDLNNNVASVNMILKWFSTDFGKNEQEVLKHVANYLKPDDSQALLE 60
           +EAARSFLR+GGLV+DLNNN  SVNMILKWFSTDFGKNEQE +KH +NYLKPDDSQ LLE
Sbjct: 674 VEAARSFLREGGLVMDLNNNATSVNMILKWFSTDFGKNEQEAMKHASNYLKPDDSQTLLE 733

Query: 61  LLDSSQLKVFYQAYDWGLN 80
           LL SSQLKV YQ YDWGLN
Sbjct: 734 LLASSQLKVLYQPYDWGLN 752

[Close]

BLAST of Cp4.1LG01g26140 vs. TrEMBL
Match: V4SHY9_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10000226mg PE=4 SV=1)

HSP 1 Score: 120.6 bits (301), Expect = 9.0e-25
Identity = 56/79 (70.89%), Postives = 68/79 (86.08%), Query Frame = 1


Query: 1   MEAARSFLRDGGLVLDLNNNVASVNMILKWFSTDFGKNEQEVLKHVANYLKPDDSQALLE 60
           M+AARSFLR GGLV+DL+  VA+++M+LKW+S DFGKNE EVLKH +NYL+P DS+ALLE
Sbjct: 814 MKAARSFLRGGGLVIDLHAKVATMSMVLKWYSVDFGKNEVEVLKHASNYLEPTDSEALLE 873

Query: 61  LLDSSQLKVFYQAYDWGLN 80
            L +SQLKV YQ YDWGLN
Sbjct: 874 ALANSQLKVTYQPYDWGLN 892

[Close]

BLAST of Cp4.1LG01g26140 vs. TrEMBL
Match: A0A067GZU4_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g002682mg PE=4 SV=1)

HSP 1 Score: 117.5 bits (293), Expect = 7.6e-24
Identity = 55/79 (69.62%), Postives = 67/79 (84.81%), Query Frame = 1


Query: 1   MEAARSFLRDGGLVLDLNNNVASVNMILKWFSTDFGKNEQEVLKHVANYLKPDDSQALLE 60
           M+AARSFLR GGLV+DL+  VA+++M+LKW+S DFGKNE EVLKH +NYL+P  S+ALLE
Sbjct: 814 MKAARSFLRGGGLVIDLHAKVATMSMVLKWYSVDFGKNEVEVLKHASNYLEPTASEALLE 873

Query: 61  LLDSSQLKVFYQAYDWGLN 80
            L +SQLKV YQ YDWGLN
Sbjct: 874 ALANSQLKVTYQPYDWGLN 892

[Close]

BLAST of Cp4.1LG01g26140 vs. TrEMBL
Match: B9GUI3_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0002s09180g PE=4 SV=2)

HSP 1 Score: 115.2 bits (287), Expect = 3.8e-23
Identity = 53/79 (67.09%), Postives = 62/79 (78.48%), Query Frame = 1


Query: 1   MEAARSFLRDGGLVLDLNNNVASVNMILKWFSTDFGKNEQEVLKHVANYLKPDDSQALLE 60
           MEAAR FLR GGL++DLN   A  + ILKWFS DFGKNE EVLKH +N+L+P  S+ L+E
Sbjct: 668 MEAARDFLRGGGLIIDLNAKTAFASKILKWFSVDFGKNEMEVLKHASNFLEPTYSETLME 727

Query: 61  LLDSSQLKVFYQAYDWGLN 80
           LLD +QLKV YQ YDWGLN
Sbjct: 728 LLDGAQLKVTYQPYDWGLN 746

[Close]

BLAST of Cp4.1LG01g26140 vs. TrEMBL
Match: M5XLQ1_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa001753mg PE=4 SV=1)

HSP 1 Score: 114.8 bits (286), Expect = 4.9e-23
Identity = 54/79 (68.35%), Postives = 64/79 (81.01%), Query Frame = 1


Query: 1   MEAARSFLRDGGLVLDLNNNVASVNMILKWFSTDFGKNEQEVLKHVANYLKPDDSQALLE 60
           MEAAR+FLR+GGL++D +  VAS + ILKWFS DFGKNE EVLKH +NYL+P  S+ALLE
Sbjct: 691 MEAARNFLRNGGLIIDFDTKVASASKILKWFSVDFGKNEVEVLKHSSNYLEPAVSEALLE 750

Query: 61  LLDSSQLKVFYQAYDWGLN 80
            L  SQLKV YQ YDWG+N
Sbjct: 751 SLAKSQLKVMYQPYDWGVN 769

[Close]

BLAST of Cp4.1LG01g26140 vs. TAIR10
Match: AT4G08550.1 (AT4G08550.1 electron carriers;protein disulfide oxidoreductases)

HSP 1 Score: 93.2 bits (230), Expect = 7.8e-20
Identity = 42/79 (53.16%), Postives = 56/79 (70.89%), Query Frame = 1


Query: 1   MEAARSFLRDGGLVLDLNNNVASVNMILKWFSTDFGKNEQEVLKHVANYLKPDDSQALLE 60
           MEAAR FLR GGL +DLN  VA ++ I  W+  DFG  ++E+LKH + +L+P  S+ALL+
Sbjct: 558 MEAARDFLRCGGLRVDLNAKVAEISKIFDWYGVDFGNGKEEILKHASTFLEPQLSEALLD 617

Query: 61  LLDSSQLKVFYQAYDWGLN 80
            L  +Q +V YQ YDWGLN
Sbjct: 618 CLVDTQFEVKYQPYDWGLN 636

[Close]

BLAST of Cp4.1LG01g26140 vs. NCBI nr
Match: gi|659081277|ref|XP_008441247.1| (PREDICTED: uncharacterized protein LOC103485435 [Cucumis melo])

HSP 1 Score: 144.1 bits (362), Expect = 1.1e-31
Identity = 68/79 (86.08%), Postives = 74/79 (93.67%), Query Frame = 1


Query: 1   MEAARSFLRDGGLVLDLNNNVASVNMILKWFSTDFGKNEQEVLKHVANYLKPDDSQALLE 60
           +EAARSFLR+GGLV+DLNNN ASVNMILKWFSTDFGKNEQEV+KH +NYLKPDDSQALLE
Sbjct: 674 VEAARSFLREGGLVMDLNNNGASVNMILKWFSTDFGKNEQEVMKHASNYLKPDDSQALLE 733

Query: 61  LLDSSQLKVFYQAYDWGLN 80
           LL SS+LKV YQ YDWGLN
Sbjct: 734 LLASSELKVLYQPYDWGLN 752

[Close]

BLAST of Cp4.1LG01g26140 vs. NCBI nr
Match: gi|449442078|ref|XP_004138809.1| (PREDICTED: uncharacterized protein LOC101216716 [Cucumis sativus])

HSP 1 Score: 141.7 bits (356), Expect = 5.4e-31
Identity = 66/79 (83.54%), Postives = 71/79 (89.87%), Query Frame = 1


Query: 1   MEAARSFLRDGGLVLDLNNNVASVNMILKWFSTDFGKNEQEVLKHVANYLKPDDSQALLE 60
           +EAARSFLR+GGLV+DLNNN  SVNMILKWFSTDFGKNEQE +KH +NYLKPDDSQ LLE
Sbjct: 674 VEAARSFLREGGLVMDLNNNATSVNMILKWFSTDFGKNEQEAMKHASNYLKPDDSQTLLE 733

Query: 61  LLDSSQLKVFYQAYDWGLN 80
           LL SSQLKV YQ YDWGLN
Sbjct: 734 LLASSQLKVLYQPYDWGLN 752

[Close]

BLAST of Cp4.1LG01g26140 vs. NCBI nr
Match: gi|567883017|ref|XP_006434067.1| (hypothetical protein CICLE_v10000226mg [Citrus clementina])

HSP 1 Score: 120.6 bits (301), Expect = 1.3e-24
Identity = 56/79 (70.89%), Postives = 68/79 (86.08%), Query Frame = 1


Query: 1   MEAARSFLRDGGLVLDLNNNVASVNMILKWFSTDFGKNEQEVLKHVANYLKPDDSQALLE 60
           M+AARSFLR GGLV+DL+  VA+++M+LKW+S DFGKNE EVLKH +NYL+P DS+ALLE
Sbjct: 814 MKAARSFLRGGGLVIDLHAKVATMSMVLKWYSVDFGKNEVEVLKHASNYLEPTDSEALLE 873

Query: 61  LLDSSQLKVFYQAYDWGLN 80
            L +SQLKV YQ YDWGLN
Sbjct: 874 ALANSQLKVTYQPYDWGLN 892

[Close]

BLAST of Cp4.1LG01g26140 vs. NCBI nr
Match: gi|802634668|ref|XP_012078120.1| (PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105638855 [Jatropha curcas])

HSP 1 Score: 118.6 bits (296), Expect = 4.9e-24
Identity = 56/80 (70.00%), Postives = 65/80 (81.25%), Query Frame = 1


Query: 1   MEAARSFLRDGGLVLDLNNNVASVNMILKWFSTDFGKNEQEVLKHVANYLKPDDSQALLE 60
           M++AR+FLR GGL++DLN  VA V+ ILKWFS DFGKNE EVLKH +NYL+P +S ALLE
Sbjct: 663 MDSARNFLRGGGLIIDLNAKVAYVSKILKWFSVDFGKNELEVLKHASNYLEPANSAALLE 722

Query: 61  LLDSSQLKVFYQAYDWGLNF 81
           LL   QLKV YQ YDWGLNF
Sbjct: 723 LLADDQLKVIYQPYDWGLNF 742

[Close]

BLAST of Cp4.1LG01g26140 vs. NCBI nr
Match: gi|470132136|ref|XP_004301942.1| (PREDICTED: uncharacterized protein LOC101305673 [Fragaria vesca subsp. vesca])

HSP 1 Score: 118.2 bits (295), Expect = 6.4e-24
Identity = 56/79 (70.89%), Postives = 64/79 (81.01%), Query Frame = 1


Query: 1   MEAARSFLRDGGLVLDLNNNVASVNMILKWFSTDFGKNEQEVLKHVANYLKPDDSQALLE 60
           MEAAR FLR+GGL++D +  VAS   ILKWFS DFGKNE EVLKH +NYL+P  S+ALLE
Sbjct: 726 MEAARGFLRNGGLIIDFDTKVASATKILKWFSIDFGKNEMEVLKHSSNYLEPAISEALLE 785

Query: 61  LLDSSQLKVFYQAYDWGLN 80
           LL +SQLKV YQ YDWGLN
Sbjct: 786 LLATSQLKVIYQPYDWGLN 804

The following BLAST results are available for this feature:

BLAST of Cp4.1LG01g26140 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG01g26140 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LQQ2_CUCSA	3.8e-31	83.54	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G403720 PE=4 SV=1	[more]
V4SHY9_9ROSI	9.0e-25	70.89	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10000226mg PE=4 SV=1	[more]
A0A067GZU4_CITSI	7.6e-24	69.62	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g002682mg PE=4 SV=1	[more]
B9GUI3_POPTR	3.8e-23	67.09	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0002s09180g PE=4 SV=2	[more]
M5XLQ1_PRUPE	4.9e-23	68.35	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa001753mg PE=4 SV=1	[more]

BLAST of Cp4.1LG01g26140 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G08550.1	7.8e-20	53.16	electron carriers;protein disulfide oxidoreductases	[more]

BLAST of Cp4.1LG01g26140 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659081277\|ref\|XP_008441247.1\|	1.1e-31	86.08	PREDICTED: uncharacterized protein LOC103485435 [Cucumis melo]	[more]
gi\|449442078\|ref\|XP_004138809.1\|	5.4e-31	83.54	PREDICTED: uncharacterized protein LOC101216716 [Cucumis sativus]	[more]
gi\|567883017\|ref\|XP_006434067.1\|	1.3e-24	70.89	hypothetical protein CICLE_v10000226mg [Citrus clementina]	[more]
gi\|802634668\|ref\|XP_012078120.1\|	4.9e-24	70.00	PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105638855 [Jatropha c...	[more]
gi\|470132136\|ref\|XP_004301942.1\|	6.4e-24	70.89	PREDICTED: uncharacterized protein LOC101305673 [Fragaria vesca subsp. vesca]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0045454	cell redox homeostasis
biological_process	GO:0035556	intracellular signal transduction
biological_process	GO:0055114	oxidation-reduction process
biological_process	GO:0022900	electron transport chain
cellular_component	GO:0005622	intracellular
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0009055	electron carrier activity
molecular_function	GO:0015035	protein disulfide oxidoreductase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG01g26140.1	Cp4.1LG01g26140.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR23054	UNCHARACTERIZED	coord: 1..79 score: 2.0
None	No IPR available	PANTHER	PTHR23054:SF27	ELECTRON CARRIER/ PROTEIN DISULFIDE OXIDOREDUCTASE	coord: 1..79 score: 2.0

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cp4.1LG01g26140	Cucsa.088180	Cucumber (Gy14) v1	cgycpeB0164
Cp4.1LG01g26140	CmaCh15G000460	Cucurbita maxima (Rimu)	cmacpeB317
Cp4.1LG01g26140	CmaCh04G030010	Cucurbita maxima (Rimu)	cmacpeB721
Cp4.1LG01g26140	CmoCh04G031210	Cucurbita moschata (Rifu)	cmocpeB673
Cp4.1LG01g26140	CmoCh15G000450	Cucurbita moschata (Rifu)	cmocpeB279
Cp4.1LG01g26140	Cla011894	Watermelon (97103) v1	cpewmB454
Cp4.1LG01g26140	Csa2G403720	Cucumber (Chinese Long) v2	cpecuB386
Cp4.1LG01g26140	MELO3C008134	Melon (DHL92) v3.5.1	cpemeB400
Cp4.1LG01g26140	ClCG11G008000	Watermelon (Charleston Gray)	cpewcgB356
Cp4.1LG01g26140	CSPI02G25110	Wild cucumber (PI 183967)	cpecpiB385
Cp4.1LG01g26140	Lsi03G004460	Bottle gourd (USVL1VR-Ls)	cpelsiB339
Cp4.1LG01g26140	MELO3C008134.2	Melon (DHL92) v3.6.1	cpemedB465
Cp4.1LG01g26140	CsaV3_2G033620	Cucumber (Chinese Long) v3	cpecucB0482
Cp4.1LG01g26140	Bhi04G002043	Wax gourd	cpewgoB0525
Cp4.1LG01g26140	CsGy2G024820	Cucumber (Gy14) v2	cgybcpeB214
Cp4.1LG01g26140	Carg22852	Silver-seed gourd	carcpeB1509
Cp4.1LG01g26140	Carg06073	Silver-seed gourd	carcpeB0034

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cp4.1LG01g26140	Cucurbita pepo (Zucchini)	cpecpeB199