Cp4.1LG01g25970 (gene) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG01g25970
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	Actin-related protein 2/3 complex subunit 2
Location	Cp4.1LG01 : 20984818 .. 20987905 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGATTTAAGGATTCTATAGACATTGCTCTTGCAACTTCTTTTCTCCAGGTAAGGTCATAATTTATTCGCCCATCAAGTGAATAGAATTTTGCAAATGACAACTTTAACTTTCTTTATGAAAAATTATGGTGCCATATATTTGTGTATAATCCTGACCAGGACTCCTTTAGTTCCTTAACAGGATATTCTAATGTTGTATTTCTAATGATAGCACTCCTGAAGTTATGCTTCTGTCTGTTTAGGACATGTTTTCATTGACCAAGTTGTGAAATTCCACGTTATGTCTGTTCAGGAGTTTGTAGAAGCAAGACGAAGTTCTGGACTCAATAGTGCCCCTCCTTGTTCATGGTCTCCATCTCCTCCTCAAGAGTTGAAGGGAGCTCCTAATGATGCATTATCAGCCAATGCGGGATTTGTTACTTTTGGTAATGTCCGAAAGTGGTGCTAGTTTTACAAGTTTTCTTTTTTTATTCCAATTTCTAAACTGCAATGTCTTTATTGAATGCAGTAATTTTCCCTCGGCATGTAGAGGGGAAAAAGATCGACCGTGTAATTTGGAGCTTGTCAACATTTCATGCATATGTCAGTTATCATGTTAAGGTTTGTTTATTTACATTATACTAACCTAATCAATTTCTTTCATGACGTGGATTCTTTAAAAAGTTCACTTTGTTACTTGAAAATGCATGACTGAATGAAACATGATTACGATATGGTACAATATCTGTCCTAGGCTTTCATGTAATGGTTATTTCTGCTAACAAATCCCAGAAATAATTTCGACTCTTTGGATAGTATAGTGAAAATAAAATGCTCTCTCCTGTCTCCTCTTTTCTACTACCTCTCAACCTTTCTTTCCTAGCCTCCATCCTATCTGTGTCTTATTGGATTTTGCTTTAGGGTTGAGCATCTTCTGATTTCATCTTCCTTGAAGTTATTTATTTCCTCTTTCTAGAAATATGGATTTAGAAAGTTGTCGTGTCAACAATGTGTATTTTTGCTTTGGTTCGAAAGTGATAGCTTTTTCATACAAGGCATTGACAAACAAGCTGGTAATTCCCCTTTCACTATCTCATTTGCATTGGTTTGGAAGTTCATTAGTGAATCTGCTTCAATATCTAGTGCATTTGCACTATTTCTAGCAAGATGGAGATGAGAATTGTAGAACTCAGTTATTGAAGCAAAGGTCTTCTCTAGGATGGAGTATAGAATGTGTTGTATGACCATCTTCAAGAAGAAGGAAACCGCTTAAAATTCCTGCCGGAATTTCTAAACTTTCTGCAGGAATTTCTAAACCAGGTTGGCTCATCTTCTGGGAAATGATAAAGGACTTTCTTAGGAAGTATGTGGAAAACTTGCACTGGTATAAGGATTTGGTTAAGCTCCCCTCTGTCATGGGAGATACCAATCACAAAAGCTATGTGGAGGCTGTGAAAGCAAACTTGAAGCTCATGGATTTTCCAGTGAAGAGTTCTAAATCCAACTTCTTTGAAGAATTCTGTAGCTTTAAATTCTGTTCAATCATATTGGGCAAGGAAGGATTGAGAAATGGTGAATATGGATTTTCGTGATGTAATGGTTTTAACAAGATTGTCTGTTCATGATAATTGGAAGGAAATAAAGAAGGCACTGAAGGATCATTTTGAGGCCAACTATTGTAGAAGCTAAAGGGAGGTAGTTCCCAAGCAAAGCCCCCAACTTCAAGGAGTAATGGAAAATTGTCAGAGAAAATACGTTTTGATACCCTTGAATTATTGATCGACATATCCCATTCCATTGATACAAGGAATCTATCAATCAACAAATGCAAAGAATCGTGACCCAACCTTGACGTTGTGAATTTACTGTTGGACAAAGGTATTTCTATAAGGCCTAGGTCTTCAATTAATTTATTAAACTTTCTTTTCCCTTTAGATTGCCTGGCTCCTATAGGAGATACCTAAAAGACTATTAGTCGCAAAAACTTTCTCGGTACATCAAGAGTAGGCATGAAGTCCCAAGATTAAATCTCACTCTCCATATCCAGTATTTGAAATTCTGACCCAGATCGATTCTCAATCTCTCTATCCATAGATGCCTTATCAAAGTTTGTCTTTAATCCCAAATCACGGTTATTCAAATGACCATAAATGGTTTTTTATAAGTCAAGCCTCCACTTTTTATATCTTTTCTCTATTCACACGTTCTTCCACCAAGAATGCATGGCTACGCACCAACACAAAGGAAGTTCGCCTCAAAAAGCTGATTGTAGGCTAGAATTATATCTGGGTTGGTAACTATGAAGTAGGAAAGCTAGGACCAGGATTCTCAATTATAGAAAACTTTAGGAAGTAACTGTTCTCCTTTTATCGTATTATGCGCATTGGAGAGTCTTCATTATTCGATTCTGAATAAATAATTTCATTATCTCTGGACAGTGTTCAGAAGGTTTTATGCACACACGGATGCGACGTCGTGTTGAATCTCTGATTCAGGTAGCATTGCCATCTCTCATTTTGCAACTCTCGCCTTTTTTTAGTTCAATTGTGCGAGGGTGTTCACTTGAACATCCAACATTTTTTTGGCTTAATATAATGCTTTGACTAGTTGAGTTATAGTAAAGTTGACTATTTGTTGCGTTCTTAATATTTGAGAAAACTGTTGTCGTGTAGGCACTTGATCGTGCCAAGCCAGATGTAATCGATACAAGTAAAAAAGCAAACAGCAGATCCTTCAAACGGCTGGATAGTGATGGGAATGCTGGGTGATGATGAATTGTGGAAATTTTGTAATACCAGTTGCTGGGTGAGAACCACTCAGTTTTCTCCATAATTGCTGGAAAGGTAATGTGGTTATTCTATTTTATTTCTTTCATTTATAGGGCCATCCTTGCTTCTTCTTTTTGGCTTTGACTGTGCTATATATAATTTATACATGTCAAATCGAAGTCGCAATATTTAATTTACCCTCCAATGATAACTTTATTACCTTTAATAAATTTACTTAGTTTAAGTTTATATTTGTGTTGATTAAAATGTTTAGGAGTGGAGGTTGAGATTATAATTGCTTCATATCATGCCTAGTGATGGTAATAAGTTGGATCATA

mRNA sequence

ATGAGATTTAAGGATTCTATAGACATTGCTCTTGCAACTTCTTTTCTCCAGGAGTTTGTAGAAGCAAGACGAAGTTCTGGACTCAATAGTGCCCCTCCTTGTTCATGGTCTCCATCTCCTCCTCAAGAGTTGAAGGGAGCTCCTAATGATGCATTATCAGCCAATGCGGGATTTGTTACTTTTGTAATTTTCCCTCGGCATGTAGAGGGGAAAAAGATCGACCGTGTAATTTGGAGCTTGTCAACATTTCATGCATATGTCAGTTATCATGTTAAGTGTTCAGAAGGTTTTATGCACACACGGATGCGACGTCGTGTTGAATCTCTGATTCAGGCACTTGATCGTGCCAAGCCAGATGTAATCGATACAAGTAAAAAAGCAAACAGCAGATCCTTCAAACGGCTGGATAGTGATGGGAATGCTGGGTGATGATGAATTGTGGAAATTTTGTAATACCAGTTGCTGGGTGAGAACCACTCAGTTTTCTCCATAATTGCTGGAAAGGTAATGTGGTTATTCTATTTTATTTCTTTCATTTATAGGGCCATCCTTGCTTCTTCTTTTTGGCTTTGACTGTGCTATATATAATTTATACATGTCAAATCGAAGTCGCAATATTTAATTTACCCTCCAATGATAACTTTATTACCTTTAATAAATTTACTTAGTTTAAGTTTATATTTGTGTTGATTAAAATGTTTAGGAGTGGAGGTTGAGATTATAATTGCTTCATATCATGCCTAGTGATGGTAATAAGTTGGATCATA

Coding sequence (CDS)

ATGAGATTTAAGGATTCTATAGACATTGCTCTTGCAACTTCTTTTCTCCAGGAGTTTGTAGAAGCAAGACGAAGTTCTGGACTCAATAGTGCCCCTCCTTGTTCATGGTCTCCATCTCCTCCTCAAGAGTTGAAGGGAGCTCCTAATGATGCATTATCAGCCAATGCGGGATTTGTTACTTTTGTAATTTTCCCTCGGCATGTAGAGGGGAAAAAGATCGACCGTGTAATTTGGAGCTTGTCAACATTTCATGCATATGTCAGTTATCATGTTAAGTGTTCAGAAGGTTTTATGCACACACGGATGCGACGTCGTGTTGAATCTCTGATTCAGGCACTTGATCGTGCCAAGCCAGATGTAATCGATACAAGTAAAAAAGCAAACAGCAGATCCTTCAAACGGCTGGATAGTGATGGGAATGCTGGGTGA

Protein sequence

MRFKDSIDIALATSFLQEFVEARRSSGLNSAPPCSWSPSPPQELKGAPNDALSANAGFVTFVIFPRHVEGKKIDRVIWSLSTFHAYVSYHVKCSEGFMHTRMRRRVESLIQALDRAKPDVIDTSKKANSRSFKRLDSDGNAG

Homology

[Close]

BLAST of Cp4.1LG01g25970 vs. Swiss-Prot
Match: ARC2A_ARATH (Actin-related protein 2/3 complex subunit 2A OS=Arabidopsis thaliana GN=ARPC2A PE=1 SV=1)

HSP 1 Score: 215.3 bits (547), Expect = 4.3e-55
Identity = 102/135 (75.56%), Postives = 121/135 (89.63%), Query Frame = 1


Query: 1   MRFKDSIDIALATSFLQEFVEARRSSGLNSAPPCSWSPSPPQELKGAPNDALSANAGFVT 60
           MRFKDS+D  LATSFL+EFVEARR++ LN+AP CSWSP+ PQEL+GAP + LSANAGFVT
Sbjct: 175 MRFKDSVDTILATSFLKEFVEARRAAALNTAPSCSWSPTAPQELEGAPKETLSANAGFVT 234

Query: 61  FVIFPRHVEGKKIDRVIWSLSTFHAYVSYHVKCSEGFMHTRMRRRVESLIQALDRAKPDV 120
           FVIFPRHVEGKK+DR +W+LSTFHAYVSYHVK SEGFMHTRMRRRVES+IQALD+AKP  
Sbjct: 235 FVIFPRHVEGKKLDRTVWNLSTFHAYVSYHVKFSEGFMHTRMRRRVESMIQALDQAKP-- 294

Query: 121 IDTSKKANSRSFKRL 136
           ++ ++  N++SFKRL
Sbjct: 295 LEKTRSMNNKSFKRL 307

[Close]

BLAST of Cp4.1LG01g25970 vs. Swiss-Prot
Match: ARC2B_ARATH (Actin-related protein 2/3 complex subunit 2B OS=Arabidopsis thaliana GN=ARPC2B PE=2 SV=1)

HSP 1 Score: 131.3 bits (329), Expect = 8.1e-30
Identity = 55/114 (48.25%), Postives = 80/114 (70.18%), Query Frame = 1


Query: 1   MRFKDSIDIALATSFLQEFVEARRSSGLNSAPPCSWSPSPPQELKGAPNDALSANAGFVT 60
           M FKD+ D+ +ATSF QE VE      +  AP CSWSP PP +L+G P   L+ N+GFV+
Sbjct: 178 MNFKDNSDVVIATSFFQELVEVGSQKDMGKAPQCSWSPIPPLQLRGEPVQDLTTNSGFVS 237

Query: 61  FVIFPRHVEGKKIDRVIWSLSTFHAYVSYHVKCSEGFMHTRMRRRVESLIQALD 115
           F I  RH+EGK++D+ +W+L  F+A   YH+KCS G++  RMR+R+E+L++ L+
Sbjct: 238 FDITSRHIEGKRLDKTVWNLLNFYACAKYHIKCSRGYIQRRMRKRMETLVKLLN 291

[Close]

BLAST of Cp4.1LG01g25970 vs. Swiss-Prot
Match: ARPC2_DICDI (Actin-related protein 2/3 complex subunit 2 OS=Dictyostelium discoideum GN=arcB PE=1 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 4.3e-23
Identity = 60/132 (45.45%), Postives = 86/132 (65.15%), Query Frame = 1


Query: 3   FKDSIDIALATSFLQEFVEARRSSGLNSAPPCSWSPS-PPQELKGAPN-DALSANAGFVT 62
           FKD+ D+ L+  FLQ FV+ R++  +++ P  ++S   PP ELKG     A  AN GFV+
Sbjct: 162 FKDADDVILSKIFLQSFVDVRKT--ISNVPSITFSQKDPPLELKGVKGVRAGQANHGFVS 221

Query: 63  FVIFPRHVEGKKIDRVIWSLSTFHAYVSYHVKCSEGFMHTRMRRRVESLIQALDRAKPDV 122
           FV+FP H+  KK       + TF  Y+ YH+KC++G+MHT MR RVESLIQ L+RAKP+ 
Sbjct: 222 FVLFPAHI--KKPQESADLIQTFRDYLHYHIKCAKGYMHTSMRNRVESLIQVLNRAKPEP 281

Query: 123 IDTSKKANSRSF 133
           ++T K+  +  F
Sbjct: 282 VNTVKRTITGKF 289

[Close]

BLAST of Cp4.1LG01g25970 vs. Swiss-Prot
Match: ARPC2_CAEEL (Probable actin-related protein 2/3 complex subunit 2 OS=Caenorhabditis elegans GN=arx-4 PE=3 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 6.2e-22
Identity = 53/132 (40.15%), Postives = 80/132 (60.61%), Query Frame = 1


Query: 3   FKDSIDIALATSFLQEFVEARRSSGLNSAPPCSWS-PSPPQELKGAPNDALSANAGFVTF 62
           FKD+ D+ +   FLQEF E R++S   +AP   +S   PP ELK  P   +  N G++TF
Sbjct: 170 FKDADDVIIGKVFLQEFREGRKAS--QTAPAVLYSLGEPPLELKDLPEARVGDNVGYITF 229

Query: 63  VIFPRHVEGKKIDRVIWSLSTFHAYVSYHVKCSEGFMHTRMRRRVESLIQALDRAKPDVI 122
           V+FPRH   K  D  I  + +F  Y+ YH+KCS+ ++HTRMR +    ++ L+RA+P+V 
Sbjct: 230 VLFPRHTNKKTKDNTIDLIHSFRDYLHYHIKCSKVYLHTRMRAKTTDFLKVLNRARPEVK 289

Query: 123 DTSKKANSRSFK 134
              K  + R+F+
Sbjct: 290 GEKKTFHGRTFQ 299

[Close]

BLAST of Cp4.1LG01g25970 vs. Swiss-Prot
Match: ARPC2_RAT (Actin-related protein 2/3 complex subunit 2 OS=Rattus norvegicus GN=Arpc2 PE=1 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 4.5e-20
Identity = 52/129 (40.31%), Postives = 76/129 (58.91%), Query Frame = 1


Query: 3   FKDSIDIALATSFLQEFVEARRSSGLNSAPPCSWSP-SPPQELKGAPNDALSANAGFVTF 62
           FKD  D+ +   F+QEF E RR+S  ++AP   +S   PP ELK   + A+  N G++TF
Sbjct: 169 FKDDDDVVIGKVFMQEFKEGRRAS--HTAPQVLFSHREPPLELKDT-DAAVGDNIGYITF 228

Query: 63  VIFPRHVEGKKIDRVIWSLSTFHAYVSYHVKCSEGFMHTRMRRRVESLIQALDRAKPDVI 122
           V+FPRH      D  I  + TF  Y+ YH+KCS+ ++HTRMR +    ++ L+RA+PD  
Sbjct: 229 VLFPRHTNATARDNTINLIHTFRDYLHYHIKCSKAYIHTRMRAKTSDFLKVLNRARPDAE 288

Query: 123 DTSKKANSR 131
               K  +R
Sbjct: 289 KKEMKTITR 294

[Close]

BLAST of Cp4.1LG01g25970 vs. TrEMBL
Match: A0A0A0KIL8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G538790 PE=4 SV=1)

HSP 1 Score: 258.1 bits (658), Expect = 6.4e-66
Identity = 126/142 (88.73%), Postives = 135/142 (95.07%), Query Frame = 1


Query: 1   MRFKDSIDIALATSFLQEFVEARRSSGLNSAPPCSWSPSPPQELKGAPNDALSANAGFVT 60
           MRFKDSIDIALATSFLQEFVEARR++GLN+APPCSWS SPPQELKGAP+DALSANAGFVT
Sbjct: 179 MRFKDSIDIALATSFLQEFVEARRTAGLNNAPPCSWSLSPPQELKGAPSDALSANAGFVT 238

Query: 61  FVIFPRHVEGKKIDRVIWSLSTFHAYVSYHVKCSEGFMHTRMRRRVESLIQALDRAKPDV 120
           FVIF RHVEGK++DRVIWSLSTFHAYVSYHVKCSEGFMHTRMRRRVESLIQALDRAKPD 
Sbjct: 239 FVIFTRHVEGKRVDRVIWSLSTFHAYVSYHVKCSEGFMHTRMRRRVESLIQALDRAKPDA 298

Query: 121 IDTSKKANSRSFKRLDSDGNAG 143
           I+T +K +SRSFKRL  DGNAG
Sbjct: 299 IETRRKTHSRSFKRLVGDGNAG 320

[Close]

BLAST of Cp4.1LG01g25970 vs. TrEMBL
Match: B9GYS0_POPTR (Actin-related protein 2/3 complex 34kDa subunit OS=Populus trichocarpa GN=POPTR_0003s15630g PE=4 SV=1)

HSP 1 Score: 231.9 bits (590), Expect = 4.9e-58
Identity = 111/135 (82.22%), Postives = 122/135 (90.37%), Query Frame = 1


Query: 1   MRFKDSIDIALATSFLQEFVEARRSSGLNSAPPCSWSPSPPQELKGAPNDALSANAGFVT 60
           MRFKDSIDIA ATSFLQEFVEAR ++GLN+APPC WSP+PP ELK AP +ALSANAGFV+
Sbjct: 179 MRFKDSIDIAFATSFLQEFVEARHTAGLNNAPPCLWSPNPPLELKEAPAEALSANAGFVS 238

Query: 61  FVIFPRHVEGKKIDRVIWSLSTFHAYVSYHVKCSEGFMHTRMRRRVESLIQALDRAKPDV 120
           FVIFPRHVEGKK+DR +W+LSTFHAYVSYHVKCSEGFMHTRMRRRVES+IQALDRAKP V
Sbjct: 239 FVIFPRHVEGKKLDRTVWNLSTFHAYVSYHVKCSEGFMHTRMRRRVESMIQALDRAKPGV 298

Query: 121 IDTSKKANSRSFKRL 136
            +  K  NSRSFKRL
Sbjct: 299 EEKKKSPNSRSFKRL 313

[Close]

BLAST of Cp4.1LG01g25970 vs. TrEMBL
Match: A9PI82_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0003s15630g PE=2 SV=1)

HSP 1 Score: 231.9 bits (590), Expect = 4.9e-58
Identity = 111/135 (82.22%), Postives = 122/135 (90.37%), Query Frame = 1


Query: 1   MRFKDSIDIALATSFLQEFVEARRSSGLNSAPPCSWSPSPPQELKGAPNDALSANAGFVT 60
           MRFKDSIDIA ATSFLQEFVEAR ++GLN+APPC WSP+PP ELK AP +ALSANAGFV+
Sbjct: 173 MRFKDSIDIAFATSFLQEFVEARHTAGLNNAPPCLWSPNPPLELKEAPAEALSANAGFVS 232

Query: 61  FVIFPRHVEGKKIDRVIWSLSTFHAYVSYHVKCSEGFMHTRMRRRVESLIQALDRAKPDV 120
           FVIFPRHVEGKK+DR +W+LSTFHAYVSYHVKCSEGFMHTRMRRRVES+IQALDRAKP V
Sbjct: 233 FVIFPRHVEGKKLDRTVWNLSTFHAYVSYHVKCSEGFMHTRMRRRVESMIQALDRAKPGV 292

Query: 121 IDTSKKANSRSFKRL 136
            +  K  NSRSFKRL
Sbjct: 293 EEKKKSPNSRSFKRL 307

[Close]

BLAST of Cp4.1LG01g25970 vs. TrEMBL
Match: W1PD86_AMBTC (Uncharacterized protein OS=Amborella trichopoda GN=AMTR_s00053p00038610 PE=4 SV=1)

HSP 1 Score: 231.5 bits (589), Expect = 6.4e-58
Identity = 109/134 (81.34%), Postives = 123/134 (91.79%), Query Frame = 1


Query: 1   MRFKDSIDIALATSFLQEFVEARRSSGLNSAPPCSWSPSPPQELKGAPNDALSANAGFVT 60
           MRFKD+ID  LATSFLQEFVEARR++GLN+APPC WSPSPP EL+GAPN AL+ANAGFVT
Sbjct: 179 MRFKDNIDTVLATSFLQEFVEARRTAGLNNAPPCLWSPSPPLELRGAPNQALTANAGFVT 238

Query: 61  FVIFPRHVEGKKIDRVIWSLSTFHAYVSYHVKCSEGFMHTRMRRRVESLIQALDRAKPDV 120
           FVIFPRHVEG+K+DR +WSLS+FHAYVSYHVKCSEGFMHTRMRRRVESLI+ALDRAKP+V
Sbjct: 239 FVIFPRHVEGRKLDRTVWSLSSFHAYVSYHVKCSEGFMHTRMRRRVESLIEALDRAKPEV 298

Query: 121 IDTSKKANSRSFKR 135
             + K A+ RSFKR
Sbjct: 299 EKSKKTAHGRSFKR 312

[Close]

BLAST of Cp4.1LG01g25970 vs. TrEMBL
Match: A0A061E3F5_THECC (Arp2/3 complex, 34 kD subunit p34-Arc isoform 1 OS=Theobroma cacao GN=TCM_005960 PE=4 SV=1)

HSP 1 Score: 230.3 bits (586), Expect = 1.4e-57
Identity = 111/135 (82.22%), Postives = 123/135 (91.11%), Query Frame = 1


Query: 1   MRFKDSIDIALATSFLQEFVEARRSSGLNSAPPCSWSPSPPQELKGAPNDALSANAGFVT 60
           MRFKDSID  LATSFLQEFVE+RR++GLN+APPC WS SPP ELKGA +DALSANAGFVT
Sbjct: 179 MRFKDSIDTVLATSFLQEFVESRRTAGLNNAPPCLWSHSPPLELKGATDDALSANAGFVT 238

Query: 61  FVIFPRHVEGKKIDRVIWSLSTFHAYVSYHVKCSEGFMHTRMRRRVESLIQALDRAKPDV 120
           FVIFPRHVEGKK+DR +W+LSTFHAYV+YHVKCSEGFMHTRMRRRVESLIQAL+RAKPD 
Sbjct: 239 FVIFPRHVEGKKLDRTVWNLSTFHAYVNYHVKCSEGFMHTRMRRRVESLIQALNRAKPDQ 298

Query: 121 IDTSKKANSRSFKRL 136
             T K A++RSFKRL
Sbjct: 299 EKTKKAAHTRSFKRL 313

[Close]

BLAST of Cp4.1LG01g25970 vs. TAIR10
Match: AT1G30825.1 (AT1G30825.1 Arp2/3 complex, 34 kD subunit p34-Arc)

HSP 1 Score: 215.3 bits (547), Expect = 2.4e-56
Identity = 102/135 (75.56%), Postives = 121/135 (89.63%), Query Frame = 1


Query: 1   MRFKDSIDIALATSFLQEFVEARRSSGLNSAPPCSWSPSPPQELKGAPNDALSANAGFVT 60
           MRFKDS+D  LATSFL+EFVEARR++ LN+AP CSWSP+ PQEL+GAP + LSANAGFVT
Sbjct: 175 MRFKDSVDTILATSFLKEFVEARRAAALNTAPSCSWSPTAPQELEGAPKETLSANAGFVT 234

Query: 61  FVIFPRHVEGKKIDRVIWSLSTFHAYVSYHVKCSEGFMHTRMRRRVESLIQALDRAKPDV 120
           FVIFPRHVEGKK+DR +W+LSTFHAYVSYHVK SEGFMHTRMRRRVES+IQALD+AKP  
Sbjct: 235 FVIFPRHVEGKKLDRTVWNLSTFHAYVSYHVKFSEGFMHTRMRRRVESMIQALDQAKP-- 294

Query: 121 IDTSKKANSRSFKRL 136
           ++ ++  N++SFKRL
Sbjct: 295 LEKTRSMNNKSFKRL 307

[Close]

BLAST of Cp4.1LG01g25970 vs. TAIR10
Match: AT2G33385.2 (AT2G33385.2 actin-related protein C2B)

HSP 1 Score: 131.3 bits (329), Expect = 4.6e-31
Identity = 55/114 (48.25%), Postives = 80/114 (70.18%), Query Frame = 1


Query: 1   MRFKDSIDIALATSFLQEFVEARRSSGLNSAPPCSWSPSPPQELKGAPNDALSANAGFVT 60
           M FKD+ D+ +ATSF QE VE      +  AP CSWSP PP +L+G P   L+ N+GFV+
Sbjct: 178 MNFKDNSDVVIATSFFQELVEVGSQKDMGKAPQCSWSPIPPLQLRGEPVQDLTTNSGFVS 237

Query: 61  FVIFPRHVEGKKIDRVIWSLSTFHAYVSYHVKCSEGFMHTRMRRRVESLIQALD 115
           F I  RH+EGK++D+ +W+L  F+A   YH+KCS G++  RMR+R+E+L++ L+
Sbjct: 238 FDITSRHIEGKRLDKTVWNLLNFYACAKYHIKCSRGYIQRRMRKRMETLVKLLN 291

[Close]

BLAST of Cp4.1LG01g25970 vs. NCBI nr
Match: gi|449433447|ref|XP_004134509.1| (PREDICTED: actin-related protein 2/3 complex subunit 2A [Cucumis sativus])

HSP 1 Score: 258.1 bits (658), Expect = 9.2e-66
Identity = 126/142 (88.73%), Postives = 135/142 (95.07%), Query Frame = 1


Query: 1   MRFKDSIDIALATSFLQEFVEARRSSGLNSAPPCSWSPSPPQELKGAPNDALSANAGFVT 60
           MRFKDSIDIALATSFLQEFVEARR++GLN+APPCSWS SPPQELKGAP+DALSANAGFVT
Sbjct: 179 MRFKDSIDIALATSFLQEFVEARRTAGLNNAPPCSWSLSPPQELKGAPSDALSANAGFVT 238

Query: 61  FVIFPRHVEGKKIDRVIWSLSTFHAYVSYHVKCSEGFMHTRMRRRVESLIQALDRAKPDV 120
           FVIF RHVEGK++DRVIWSLSTFHAYVSYHVKCSEGFMHTRMRRRVESLIQALDRAKPD 
Sbjct: 239 FVIFTRHVEGKRVDRVIWSLSTFHAYVSYHVKCSEGFMHTRMRRRVESLIQALDRAKPDA 298

Query: 121 IDTSKKANSRSFKRLDSDGNAG 143
           I+T +K +SRSFKRL  DGNAG
Sbjct: 299 IETRRKTHSRSFKRLVGDGNAG 320

[Close]

BLAST of Cp4.1LG01g25970 vs. NCBI nr
Match: gi|659077835|ref|XP_008439412.1| (PREDICTED: actin-related protein 2/3 complex subunit 2A [Cucumis melo])

HSP 1 Score: 256.9 bits (655), Expect = 2.0e-65
Identity = 125/142 (88.03%), Postives = 135/142 (95.07%), Query Frame = 1


Query: 1   MRFKDSIDIALATSFLQEFVEARRSSGLNSAPPCSWSPSPPQELKGAPNDALSANAGFVT 60
           MRFKDSIDIALATSFLQEFVEARR++GLN+APPCSWS SPPQELKGAP+DALSANAGFVT
Sbjct: 179 MRFKDSIDIALATSFLQEFVEARRTAGLNNAPPCSWSLSPPQELKGAPSDALSANAGFVT 238

Query: 61  FVIFPRHVEGKKIDRVIWSLSTFHAYVSYHVKCSEGFMHTRMRRRVESLIQALDRAKPDV 120
           FVIF RHVEGK++DRVIWSLSTFHAYVSYHVKCSEGFMHTRMRRRVESLIQALDRAKPD 
Sbjct: 239 FVIFTRHVEGKRVDRVIWSLSTFHAYVSYHVKCSEGFMHTRMRRRVESLIQALDRAKPDA 298

Query: 121 IDTSKKANSRSFKRLDSDGNAG 143
           I+T +K +SRSFKRL  DGN+G
Sbjct: 299 IETRRKTHSRSFKRLVGDGNSG 320

[Close]

BLAST of Cp4.1LG01g25970 vs. NCBI nr
Match: gi|694385534|ref|XP_009368584.1| (PREDICTED: actin-related protein 2/3 complex subunit 2A isoform X1 [Pyrus x bretschneideri])

HSP 1 Score: 235.3 bits (599), Expect = 6.4e-59
Identity = 114/135 (84.44%), Postives = 122/135 (90.37%), Query Frame = 1


Query: 1   MRFKDSIDIALATSFLQEFVEARRSSGLNSAPPCSWSPSPPQELKGAPNDALSANAGFVT 60
           MRFKDSIDI LATSFLQEFVEARR++GLNSAPPC WSP+PP ELK AP +ALSANAGFVT
Sbjct: 179 MRFKDSIDIVLATSFLQEFVEARRAAGLNSAPPCLWSPTPPLELKEAPTEALSANAGFVT 238

Query: 61  FVIFPRHVEGKKIDRVIWSLSTFHAYVSYHVKCSEGFMHTRMRRRVESLIQALDRAKPDV 120
           FVIFPRHVEGKK+DR +WSLSTFHAYVSYHVKCSEGFMHTRMRRRVESLI+ALDRAKP +
Sbjct: 239 FVIFPRHVEGKKLDRTVWSLSTFHAYVSYHVKCSEGFMHTRMRRRVESLIEALDRAKPGM 298

Query: 121 IDTSKKANSRSFKRL 136
            D    A SRSFKRL
Sbjct: 299 EDGKNAAQSRSFKRL 313

[Close]

BLAST of Cp4.1LG01g25970 vs. NCBI nr
Match: gi|657950957|ref|XP_008350443.1| (PREDICTED: actin-related protein 2/3 complex subunit 2A-like [Malus domestica])

HSP 1 Score: 235.3 bits (599), Expect = 6.4e-59
Identity = 114/135 (84.44%), Postives = 122/135 (90.37%), Query Frame = 1


Query: 1   MRFKDSIDIALATSFLQEFVEARRSSGLNSAPPCSWSPSPPQELKGAPNDALSANAGFVT 60
           MRFKDSIDI LATSFLQEFVEARR++GLNSAPPC WSP+PP ELK AP +ALSANAGFVT
Sbjct: 193 MRFKDSIDIVLATSFLQEFVEARRAAGLNSAPPCLWSPTPPLELKEAPTEALSANAGFVT 252

Query: 61  FVIFPRHVEGKKIDRVIWSLSTFHAYVSYHVKCSEGFMHTRMRRRVESLIQALDRAKPDV 120
           FVIFPRHVEGKK+DR +WSLSTFHAYVSYHVKCSEGFMHTRMRRRVESLI+ALDRAKP +
Sbjct: 253 FVIFPRHVEGKKLDRTVWSLSTFHAYVSYHVKCSEGFMHTRMRRRVESLIEALDRAKPGM 312

Query: 121 IDTSKKANSRSFKRL 136
            D    A SRSFKRL
Sbjct: 313 EDGKNAAQSRSFKRL 327

[Close]

BLAST of Cp4.1LG01g25970 vs. NCBI nr
Match: gi|224075397|ref|XP_002304616.1| (actin-related protein 2/3 complex 34kDa subunit [Populus trichocarpa])

HSP 1 Score: 231.9 bits (590), Expect = 7.1e-58
Identity = 111/135 (82.22%), Postives = 122/135 (90.37%), Query Frame = 1


Query: 1   MRFKDSIDIALATSFLQEFVEARRSSGLNSAPPCSWSPSPPQELKGAPNDALSANAGFVT 60
           MRFKDSIDIA ATSFLQEFVEAR ++GLN+APPC WSP+PP ELK AP +ALSANAGFV+
Sbjct: 179 MRFKDSIDIAFATSFLQEFVEARHTAGLNNAPPCLWSPNPPLELKEAPAEALSANAGFVS 238

Query: 61  FVIFPRHVEGKKIDRVIWSLSTFHAYVSYHVKCSEGFMHTRMRRRVESLIQALDRAKPDV 120
           FVIFPRHVEGKK+DR +W+LSTFHAYVSYHVKCSEGFMHTRMRRRVES+IQALDRAKP V
Sbjct: 239 FVIFPRHVEGKKLDRTVWNLSTFHAYVSYHVKCSEGFMHTRMRRRVESMIQALDRAKPGV 298

Query: 121 IDTSKKANSRSFKRL 136
            +  K  NSRSFKRL
Sbjct: 299 EEKKKSPNSRSFKRL 313

The following BLAST results are available for this feature:

BLAST of Cp4.1LG01g25970 vs. Swiss-Prot


Match Name	E-value	Identity	Description
ARC2A_ARATH	4.3e-55	75.56	Actin-related protein 2/3 complex subunit 2A OS=Arabidopsis thaliana GN=ARPC2A P...	[more]
ARC2B_ARATH	8.1e-30	48.25	Actin-related protein 2/3 complex subunit 2B OS=Arabidopsis thaliana GN=ARPC2B P...	[more]
ARPC2_DICDI	4.3e-23	45.45	Actin-related protein 2/3 complex subunit 2 OS=Dictyostelium discoideum GN=arcB ...	[more]
ARPC2_CAEEL	6.2e-22	40.15	Probable actin-related protein 2/3 complex subunit 2 OS=Caenorhabditis elegans G...	[more]
ARPC2_RAT	4.5e-20	40.31	Actin-related protein 2/3 complex subunit 2 OS=Rattus norvegicus GN=Arpc2 PE=1 S...	[more]

BLAST of Cp4.1LG01g25970 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KIL8_CUCSA	6.4e-66	88.73	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G538790 PE=4 SV=1	[more]
B9GYS0_POPTR	4.9e-58	82.22	Actin-related protein 2/3 complex 34kDa subunit OS=Populus trichocarpa GN=POPTR_...	[more]
A9PI82_POPTR	4.9e-58	82.22	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0003s15630g PE=2 SV=1	[more]
W1PD86_AMBTC	6.4e-58	81.34	Uncharacterized protein OS=Amborella trichopoda GN=AMTR_s00053p00038610 PE=4 SV=...	[more]
A0A061E3F5_THECC	1.4e-57	82.22	Arp2/3 complex, 34 kD subunit p34-Arc isoform 1 OS=Theobroma cacao GN=TCM_005960...	[more]

BLAST of Cp4.1LG01g25970 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G30825.1	2.4e-56	75.56	Arp2/3 complex, 34 kD subunit p34-Arc	[more]
AT2G33385.2	4.6e-31	48.25	actin-related protein C2B	[more]

BLAST of Cp4.1LG01g25970 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449433447\|ref\|XP_004134509.1\|	9.2e-66	88.73	PREDICTED: actin-related protein 2/3 complex subunit 2A [Cucumis sativus]	[more]
gi\|659077835\|ref\|XP_008439412.1\|	2.0e-65	88.03	PREDICTED: actin-related protein 2/3 complex subunit 2A [Cucumis melo]	[more]
gi\|694385534\|ref\|XP_009368584.1\|	6.4e-59	84.44	PREDICTED: actin-related protein 2/3 complex subunit 2A isoform X1 [Pyrus x bret...	[more]
gi\|657950957\|ref\|XP_008350443.1\|	6.4e-59	84.44	PREDICTED: actin-related protein 2/3 complex subunit 2A-like [Malus domestica]	[more]
gi\|224075397\|ref\|XP_002304616.1\|	7.1e-58	82.22	actin-related protein 2/3 complex 34kDa subunit [Populus trichocarpa]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Biological Process**
Term	Definition
GO:0034314	Arp2/3 complex-mediated actin nucleation
GO:0030833	regulation of actin filament polymerization

Vocabulary: **Cellular Component**
Term	Definition
GO:0015629	actin cytoskeleton
GO:0005885	Arp2/3 protein complex

Vocabulary: **INTERPRO**
Term	Definition
IPR007188	ARPC2

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0034314	Arp2/3 complex-mediated actin nucleation
biological_process	GO:0010090	trichome morphogenesis
biological_process	GO:0030833	regulation of actin filament polymerization
cellular_component	GO:0005885	Arp2/3 protein complex
cellular_component	GO:0015629	actin cytoskeleton
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG01g25970.1	Cp4.1LG01g25970.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007188	Actin-related protein 2/3 complex subunit 2	PANTHER	PTHR12058	ARP2/3 COMPLEX 34 KDA SUBUNIT	coord: 1..141 score: 1.9
IPR007188	Actin-related protein 2/3 complex subunit 2	PFAM	PF04045	P34-Arc	coord: 2..119 score: 4.3
None	No IPR available	GENE3D	G3DSA:3.30.1460.20		coord: 1..119 score: 2.0
None	No IPR available	unknown	SSF69645	Arp2/3 complex subunits	coord: 1..119 score: 4.71

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cp4.1LG01g25970	Cucumber (Gy14) v2	cgybcpeB214
Cp4.1LG01g25970	Melon (DHL92) v3.6.1	cpemedB465
Cp4.1LG01g25970	Silver-seed gourd	carcpeB0034
Cp4.1LG01g25970	Silver-seed gourd	carcpeB1408
Cp4.1LG01g25970	Cucumber (Chinese Long) v3	cpecucB0482
Cp4.1LG01g25970	Wax gourd	cpewgoB0525
Cp4.1LG01g25970	Cucurbita pepo (Zucchini)	cpecpeB199
Cp4.1LG01g25970	Cucumber (Gy14) v1	cgycpeB0164
Cp4.1LG01g25970	Cucurbita maxima (Rimu)	cmacpeB317
Cp4.1LG01g25970	Cucurbita maxima (Rimu)	cmacpeB721
Cp4.1LG01g25970	Cucurbita moschata (Rifu)	cmocpeB279
Cp4.1LG01g25970	Cucurbita moschata (Rifu)	cmocpeB673
Cp4.1LG01g25970	Wild cucumber (PI 183967)	cpecpiB385
Cp4.1LG01g25970	Cucumber (Chinese Long) v2	cpecuB386
Cp4.1LG01g25970	Bottle gourd (USVL1VR-Ls)	cpelsiB339
Cp4.1LG01g25970	Melon (DHL92) v3.5.1	cpemeB400