Cp4.1LG01g25910 (gene) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG01g25910
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	Unknown protein
Location	Cp4.1LG01 : 20993019 .. 20993336 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATTCAAGGTGTAGATCAGCAAGACCCCTTGTGCCCCATAGAGAAGCTATGGCGAGCAGCAGAAACACGAAGCCAACGGGGACGTCGTTGAATGCATCGTCGTGTTCGTGTCATGTTTCGTTTATGGTTCATCACCAAGAGAGGGCGAAGATGGCTTCGTCGAACCAAAGGGTTGTTCATGAGGTCATGAACGTTCACGAGGCTAAGTTTTGGAACGGTTATGGCGTTGTTGTCGACGAACATATCGATCGGAAGGCTGCTATGTATATATCGTCTGTGCAAGAACGGTTTAGACTTGAGGGGTTGATCAGCTGA

mRNA sequence

ATGGATTCAAGGTGTAGATCAGCAAGACCCCTTGTGCCCCATAGAGAAGCTATGGCGAGCAGCAGAAACACGAAGCCAACGGGGACGTCGTTGAATGCATCGTCGTGTTCGTGTCATGTTTCGTTTATGGTTCATCACCAAGAGAGGGCGAAGATGGCTTCGTCGAACCAAAGGGTTGTTCATGAGGTCATGAACGTTCACGAGGCTAAGTTTTGGAACGGTTATGGCGTTGTTGTCGACGAACATATCGATCGGAAGGCTGCTATGTATATATCGTCTGTGCAAGAACGGTTTAGACTTGAGGGGTTGATCAGCTGA

Coding sequence (CDS)

ATGGATTCAAGGTGTAGATCAGCAAGACCCCTTGTGCCCCATAGAGAAGCTATGGCGAGCAGCAGAAACACGAAGCCAACGGGGACGTCGTTGAATGCATCGTCGTGTTCGTGTCATGTTTCGTTTATGGTTCATCACCAAGAGAGGGCGAAGATGGCTTCGTCGAACCAAAGGGTTGTTCATGAGGTCATGAACGTTCACGAGGCTAAGTTTTGGAACGGTTATGGCGTTGTTGTCGACGAACATATCGATCGGAAGGCTGCTATGTATATATCGTCTGTGCAAGAACGGTTTAGACTTGAGGGGTTGATCAGCTGA

Protein sequence

MDSRCRSARPLVPHREAMASSRNTKPTGTSLNASSCSCHVSFMVHHQERAKMASSNQRVVHEVMNVHEAKFWNGYGVVVDEHIDRKAAMYISSVQERFRLEGLIS

Homology

[Close]

BLAST of Cp4.1LG01g25910 vs. TrEMBL
Match: A0A0A0LQT5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G406070 PE=4 SV=1)

HSP 1 Score: 126.3 bits (316), Expect = 2.2e-26
Identity = 75/113 (66.37%), Postives = 84/113 (74.34%), Query Frame = 1


Query: 1   MDSRCRSARPLVP------HREAMASSRNTKPTGTSLNASSCSCHVSFMVHHQERAKMAS 60
           MDSRCR AR LV       H EAM  SR+ K T T+ NAS CS H+SF VHHQERA MA 
Sbjct: 1   MDSRCR-ARGLVKGMVGPLHGEAMTGSRS-KITPTTSNASLCSSHISFTVHHQERALMAP 60

Query: 61  SNQRVVHE--VMNVHEAKFWNGYGVVVDEHIDRKAAMYISSVQERFRLEGLIS 106
           SN RVVH+  + NVHEA  WN YGV VDEHIDRKA++YISSVQERF+LEGLI+
Sbjct: 61  SNHRVVHDQAMNNVHEATLWNLYGVGVDEHIDRKASLYISSVQERFKLEGLIN 111

[Close]

BLAST of Cp4.1LG01g25910 vs. NCBI nr
Match: gi|700208038|gb|KGN63157.1| (hypothetical protein Csa_2G406070 [Cucumis sativus])

HSP 1 Score: 126.3 bits (316), Expect = 3.1e-26
Identity = 75/113 (66.37%), Postives = 84/113 (74.34%), Query Frame = 1


Query: 1   MDSRCRSARPLVP------HREAMASSRNTKPTGTSLNASSCSCHVSFMVHHQERAKMAS 60
           MDSRCR AR LV       H EAM  SR+ K T T+ NAS CS H+SF VHHQERA MA 
Sbjct: 1   MDSRCR-ARGLVKGMVGPLHGEAMTGSRS-KITPTTSNASLCSSHISFTVHHQERALMAP 60

Query: 61  SNQRVVHE--VMNVHEAKFWNGYGVVVDEHIDRKAAMYISSVQERFRLEGLIS 106
           SN RVVH+  + NVHEA  WN YGV VDEHIDRKA++YISSVQERF+LEGLI+
Sbjct: 61  SNHRVVHDQAMNNVHEATLWNLYGVGVDEHIDRKASLYISSVQERFKLEGLIN 111

The following BLAST results are available for this feature:

BLAST of Cp4.1LG01g25910 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG01g25910 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LQT5_CUCSA	2.2e-26	66.37	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G406070 PE=4 SV=1	[more]

BLAST of Cp4.1LG01g25910 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG01g25910 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700208038\|gb\|KGN63157.1\|	3.1e-26	66.37	hypothetical protein Csa_2G406070 [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG01g25910.1	Cp4.1LG01g25910.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cp4.1LG01g25910	Cucumber (Chinese Long) v3	cpecucB0482
Cp4.1LG01g25910	Wax gourd	cpewgoB0525
Cp4.1LG01g25910	Cucurbita pepo (Zucchini)	cpecpeB199
Cp4.1LG01g25910	Cucumber (Gy14) v1	cgycpeB0164
Cp4.1LG01g25910	Cucurbita maxima (Rimu)	cmacpeB317
Cp4.1LG01g25910	Cucurbita maxima (Rimu)	cmacpeB721
Cp4.1LG01g25910	Cucurbita moschata (Rifu)	cmocpeB279
Cp4.1LG01g25910	Cucurbita moschata (Rifu)	cmocpeB673
Cp4.1LG01g25910	Wild cucumber (PI 183967)	cpecpiB385
Cp4.1LG01g25910	Cucumber (Chinese Long) v2	cpecuB386
Cp4.1LG01g25910	Bottle gourd (USVL1VR-Ls)	cpelsiB339
Cp4.1LG01g25910	Melon (DHL92) v3.5.1	cpemeB400
Cp4.1LG01g25910	Cucumber (Gy14) v2	cgybcpeB214
Cp4.1LG01g25910	Melon (DHL92) v3.6.1	cpemedB465
Cp4.1LG01g25910	Silver-seed gourd	carcpeB0034
Cp4.1LG01g25910	Silver-seed gourd	carcpeB1408