Cp4.1LG01g25740 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG01g25740
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionRibosome recycling factor
LocationCp4.1LG01 : 20933047 .. 20935496 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TGAATTAAAAAAAGAAAAAAAAAAAAAGGGTTTTCTAAATCTCCATCGTTGGGTTTTACGAAAAACCCTAGCTAGAAAGCTTAGCAAGCATCGAGATGATCAAATAAGTCCGGGATTTCGATCCGTTCGAGCACGACGGTCTTCTTCAATGGCTATGTTTCTCAAACGTTCTTTCTCCTACAGGAATTTCCTTCTTCTCCGAAATTTTGCCAATCCAAGTCGTAACCTTTCCTTCTTCGTTAACGATCTCTGTAACTCATGGACCTCCGAGATGCCTGGAGCCTTTGCTCTTCCTCCTGCAGATTTCATCCGAGAAAGTCGTCGGGGCTTTGCTAAAGGCCGAAAATCAAGTAACCGTCTTTTCATCTCTTATTATGCTTGATCTTCAAATCATTATTTCTTATGAAATCGAAAATTTGTTGCACTGGCTTCAAATTTTCATTGCCGTTTCGACTTTTCTCTTAATCTTGTTGAGTATTTTGTTCATGTCCCTCCTGCTTCTTACAAGTTCCGGTTTTTAATTTTTGCATTGAGAAGACGAATCTTCTACAAGTATGGCTGAAGCATTACCTGATATTAGACCAACTATTAAAGCCAACGCTAGCTCACAGATGGAGGCTGCGATATCTGCATTATCAGGAGAATTGAGCAAACTTCGAACAGGAAGGGCATCATCTGGTATGTTTACCATCATATCATGTACCATTTACACTTCGAGGTTCCATTATGTTAGCTTGGCCTTTTGATTGCTCACACTTTCTTATATTTTGTATTTACAGGAATGCTTGACCACATTATAGTAGAAATTTCAGGTGTGAGGATGCCGCTGAATCAGATCGCAGCTGTTTCGGTCTTGGATTCAAAAACACTGTCAATAAATCCTTATGATCCTAATGTAATCAACTTGCAAAACCCTATTGTTCTTTAATTTATTGTGTTTTCTTCTTCATGGCATGTTAATTTCTTAGATTCATGATTATTTGTGATAAAGAGACTTAACAGAGTAAATCTTGAATATATATTCTTTTAAGTTATGTTTCATTAGATCGTTACCTTAATAAGATTCTTGTTTCTACTCTACCTAACATGAGAATTCATACTTGAAAAGGCTAATCTGAGTGGGCTACTTATGATAGTTACTGTTCAATGCAGACACTGAAGAACTTAGAGAGTGCTATAGTTTCATCTCCTCTAGGTTTAGCGCCAAGAGTAGATGGAGAGAGGTTAATTGCAGTCATTCCACCGTAAGCTTTAATTTGCTCTTCCACTCAAGTTAATATGACTGTTTAAATTTGGCTATAACAATTATCAGGACAAAATAGTTGTCTAGAAGCTGTTCTTTTACTAATAAAATTGTCCTTTTTGTTCTTGCTATACCAGATTGACCAAAGAGCATATCCAGGTAGTCCTCAAGTCTTTTTTCATCCTTCCTTGTTATCAACTTATCACCTTCCTTCTTTCTATAATGCCTTCATGGTGGATATTTTTCTAGGCTATGTGTAAGCTGGTCACCAAGTGTTGTGAAGATTCCAGACAAAGCATACGACGAGCTCGTCAAAAGGTATTTTTAGTTGTACCGTCCTGCTATAAATTTCCTTTTCAGAAATCTCTGTACTTAATCATCAAGGGGGCTGTTCTTATTGATACACGATGTACCTAGTGTGGTAAGCTCAATAGTTGTGGGAATGTCAGGATTTCTATAGTCATCTGGACAAATTCACCTCTGAATCGCAAATCTCCCCTCTTACTAAACCCTATTCTTTTTCCAATTGTGACTTATAATCAATTACAACTGATACTCTGCGCATTCCCAGTTTCAAAATCAATGCCCTGATTTTATGTATGACAAGTTGAATCAGCCTGCAAAAGCAATTTAAGCTCTTTATTTGATATTTGCATTATTTCAGAGTTATGAGTTGATTGGTGGTTGATTCGCAGGCAATGGATACAGTAAAAAAGATGAGCTCAAGCTACCCGAAGGATGACATGAAAAGATTGGAAAAGGAAGTGAGTTGTTGTAGACGTTGGTTGTTACCTAATCAAATCATAGTTAGAGTTTGAAACTTGCTTTTTTATTTATTAAAATCTTGTTACGTTTTTTCTTCTTCCAGGTAGATGAATTGACCAAGAAGTTTATCAAGTCAGCGGAAGACCTCTGCAAGGCTAAGGAGAAGGAGATCACTGGAGGTTGAATAATTGAAAAAGATTATCTCGTTCTCAATTTTGACAGATTAATTTAAATTCTACTATAGAGCTTTTCATAACCCATTTTGAGGGATGAAACAGAGGTGAAGAGATCTGTCATATTTGGAAACATAGACGCAATCCAAATGAAATTCTGTGGGTGTATTTTCACCTGAATGGATTCACATGTGGCAACAAGTATTAGGGTTTGAATTCTTCCAACTCGAAAAGAGAGCTTCGAAAGTTACAACTTTTTTCTGTTTTTT

mRNA sequence

TGAATTAAAAAAAGAAAAAAAAAAAAAGGGTTTTCTAAATCTCCATCGTTGGGTTTTACGAAAAACCCTAGCTAGAAAGCTTAGCAAGCATCGAGATGATCAAATAAGTCCGGGATTTCGATCCGTTCGAGCACGACGGTCTTCTTCAATGGCTATGTTTCTCAAACGTTCTTTCTCCTACAGGAATTTCCTTCTTCTCCGAAATTTTGCCAATCCAAGTCGTAACCTTTCCTTCTTCGTTAACGATCTCTGTAACTCATGGACCTCCGAGATGCCTGGAGCCTTTGCTCTTCCTCCTGCAGATTTCATCCGAGAAAGTCGTCGGGGCTTTGCTAAAGGCCGAAAATCAAACGAATCTTCTACAAGTATGGCTGAAGCATTACCTGATATTAGACCAACTATTAAAGCCAACGCTAGCTCACAGATGGAGGCTGCGATATCTGCATTATCAGGAGAATTGAGCAAACTTCGAACAGGAAGGGCATCATCTGGAATGCTTGACCACATTATAGTAGAAATTTCAGGTGTGAGGATGCCGCTGAATCAGATCGCAGCTGTTTCGGTCTTGGATTCAAAAACACTGTCAATAAATCCTTATGATCCTAATACACTGAAGAACTTAGAGAGTGCTATAGTTTCATCTCCTCTAGGTTTAGCGCCAAGAGTAGATGGAGAGAGGTTAATTGCAGTCATTCCACCATTGACCAAAGAGCATATCCAGGCTATGTGTAAGCTGGTCACCAAGTGTTGTGAAGATTCCAGACAAAGCATACGACGAGCTCGTCAAAAGGCAATGGATACAGTAAAAAAGATGAGCTCAAGCTACCCGAAGGATGACATGAAAAGATTGGAAAAGGAAGTAGATGAATTGACCAAGAAGTTTATCAAGTCAGCGGAAGACCTCTGCAAGGCTAAGGAGAAGGAGATCACTGGAGGTTGAATAATTGAAAAAGATTATCTCGTTCTCAATTTTGACAGATTAATTTAAATTCTACTATAGAGCTTTTCATAACCCATTTTGAGGGATGAAACAGAGGTGAAGAGATCTGTCATATTTGGAAACATAGACGCAATCCAAATGAAATTCTGTGGGTGTATTTTCACCTGAATGGATTCACATGTGGCAACAAGTATTAGGGTTTGAATTCTTCCAACTCGAAAAGAGAGCTTCGAAAGTTACAACTTTTTTCTGTTTTTT

Coding sequence (CDS)

ATGGCTATGTTTCTCAAACGTTCTTTCTCCTACAGGAATTTCCTTCTTCTCCGAAATTTTGCCAATCCAAGTCGTAACCTTTCCTTCTTCGTTAACGATCTCTGTAACTCATGGACCTCCGAGATGCCTGGAGCCTTTGCTCTTCCTCCTGCAGATTTCATCCGAGAAAGTCGTCGGGGCTTTGCTAAAGGCCGAAAATCAAACGAATCTTCTACAAGTATGGCTGAAGCATTACCTGATATTAGACCAACTATTAAAGCCAACGCTAGCTCACAGATGGAGGCTGCGATATCTGCATTATCAGGAGAATTGAGCAAACTTCGAACAGGAAGGGCATCATCTGGAATGCTTGACCACATTATAGTAGAAATTTCAGGTGTGAGGATGCCGCTGAATCAGATCGCAGCTGTTTCGGTCTTGGATTCAAAAACACTGTCAATAAATCCTTATGATCCTAATACACTGAAGAACTTAGAGAGTGCTATAGTTTCATCTCCTCTAGGTTTAGCGCCAAGAGTAGATGGAGAGAGGTTAATTGCAGTCATTCCACCATTGACCAAAGAGCATATCCAGGCTATGTGTAAGCTGGTCACCAAGTGTTGTGAAGATTCCAGACAAAGCATACGACGAGCTCGTCAAAAGGCAATGGATACAGTAAAAAAGATGAGCTCAAGCTACCCGAAGGATGACATGAAAAGATTGGAAAAGGAAGTAGATGAATTGACCAAGAAGTTTATCAAGTCAGCGGAAGACCTCTGCAAGGCTAAGGAGAAGGAGATCACTGGAGGTTGA

Protein sequence

MAMFLKRSFSYRNFLLLRNFANPSRNLSFFVNDLCNSWTSEMPGAFALPPADFIRESRRGFAKGRKSNESSTSMAEALPDIRPTIKANASSQMEAAISALSGELSKLRTGRASSGMLDHIIVEISGVRMPLNQIAAVSVLDSKTLSINPYDPNTLKNLESAIVSSPLGLAPRVDGERLIAVIPPLTKEHIQAMCKLVTKCCEDSRQSIRRARQKAMDTVKKMSSSYPKDDMKRLEKEVDELTKKFIKSAEDLCKAKEKEITGG
Homology
[Close]
BLAST of Cp4.1LG01g25740 vs. Swiss-Prot
Match: RRF_BACSK (Ribosome-recycling factor OS=Bacillus clausii (strain KSM-K16) GN=frr PE=3 SV=1)

HSP 1 Score: 125.2 bits (313), Expect = 1.1e-27
Identity = 69/178 (38.76%), Postives = 114/178 (64.04%), Query Frame = 1 

Query: 85  IKANASSQMEAAISALSGELSKLRTGRASSGMLDHIIVEISGVRMPLNQIAAVSVLDSKT 144
           IKA+A ++M+ AI  LS EL+KLR GRA+  +LD + VE  G + PLNQ+A+V+V +++ 
Sbjct: 5   IKADAKTRMDKAIDVLSRELAKLRAGRANPALLDRVTVEYYGAQTPLNQLASVTVPEARL 64

Query: 145 LSINPYDPNTLKNLESAIVSSPLGLAPRVDGERLIAVIPPLTKEHIQAMCKLVTKCCEDS 204
           L I PYD   + ++E AI+ S LGL P  DG+ +   IPPLT+E  + + +LV+K  E+S
Sbjct: 65  LLITPYDKTAVASIEKAILKSDLGLTPSNDGQVIRIAIPPLTEERRKDLVRLVSKTAEES 124

Query: 205 RQSIRRARQKAMDTVKKM--SSSYPKDDMKRLEKEVDELTKKFIKSAEDLCKAKEKEI 261
           + ++R  R+ A D +KK+       +D+++    ++ +LT  ++   ++  K KE+EI
Sbjct: 125 KVAVRNIRRDANDELKKLQKDGEMTEDELRSATDDIQKLTDTYVAKIDEKAKQKEQEI 182

[Close]
BLAST of Cp4.1LG01g25740 vs. Swiss-Prot
Match: RRF_BACHD (Ribosome-recycling factor OS=Bacillus halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 9153 / C-125) GN=frr PE=3 SV=3)

HSP 1 Score: 124.4 bits (311), Expect = 1.8e-27
Identity = 72/175 (41.14%), Postives = 109/175 (62.29%), Query Frame = 1 

Query: 88  NASSQMEAAISALSGELSKLRTGRASSGMLDHIIVEISGVRMPLNQIAAVSVLDSKTLSI 147
           +A  +M  A  AL  EL+KLR GRA+  MLD I VE  G   PLNQ+A +SV +++ L I
Sbjct: 8   DAEQRMTKATEALGRELAKLRAGRANPAMLDRITVEYYGAETPLNQLATISVPEARLLVI 67

Query: 148 NPYDPNTLKNLESAIVSSPLGLAPRVDGERLIAVIPPLTKEHIQAMCKLVTKCCEDSRQS 207
            P+D +++ ++E AI  S LGL P  DG  +   IPPLT+E  + + KLV K  E+++ +
Sbjct: 68  QPFDKSSISDIERAIQKSDLGLTPSNDGTVIRITIPPLTEERRRDLTKLVKKSAEEAKVA 127

Query: 208 IRRARQKAMDTVKK--MSSSYPKDDMKRLEKEVDELTKKFIKSAEDLCKAKEKEI 261
           +R  R+ A D +KK        +DD++R+ ++V +LT K+I+  +   +AKEKEI
Sbjct: 128 VRNIRRDANDDLKKRQKDGELTEDDLRRVTEDVQKLTDKYIEQIDQKAEAKEKEI 182

[Close]
BLAST of Cp4.1LG01g25740 vs. Swiss-Prot
Match: RRF_DESVM (Ribosome-recycling factor OS=Desulfovibrio vulgaris (strain Miyazaki F / DSM 19637) GN=frr PE=3 SV=1)

HSP 1 Score: 123.6 bits (309), Expect = 3.1e-27
Identity = 70/179 (39.11%), Postives = 117/179 (65.36%), Query Frame = 1 

Query: 84  TIKANASSQMEAAISALSGELSKLRTGRASSGMLDHIIVEISGVRMPLNQIAAVSVLDSK 143
           +I  +A  +ME A+ +L  E +KLRTGRAS+ ++D+I V+  G   P++Q+A+VSV DS+
Sbjct: 5   SILLDAEERMEKALGSLDREFAKLRTGRASTSLVDNIKVDYYGTPTPISQLASVSVPDSR 64

Query: 144 TLSINPYDPNTLKNLESAIVSSPLGLAPRVDGERLIAVIPPLTKEHIQAMCKLVTKCCED 203
           TL+I P+D +  + +E AI+ S LGL P  DG+ +   IPPLT+E  + + K+  K  E+
Sbjct: 65  TLTIQPWDRSAFQLVEKAIMKSDLGLNPVNDGKIIRISIPPLTEERRKDLVKVARKYTEE 124

Query: 204 SRQSIRRARQKAMDTVKKM--SSSYPKDDMKRLEKEVDELTKKFIKSAEDLCKAKEKEI 261
           ++ ++R  R+ A D +KK+       +DD+++   +V +LT +F+  +++ C AKEKEI
Sbjct: 125 AKVAVRNVRRDANDALKKLEKGKEISEDDVRKSTDDVQKLTDRFVAKSDEKCTAKEKEI 183

[Close]
BLAST of Cp4.1LG01g25740 vs. Swiss-Prot
Match: RRF_DESAG (Ribosome-recycling factor OS=Desulfovibrio alaskensis (strain G20) GN=frr PE=3 SV=1)

HSP 1 Score: 122.9 bits (307), Expect = 5.4e-27
Identity = 72/179 (40.22%), Postives = 111/179 (62.01%), Query Frame = 1 

Query: 84  TIKANASSQMEAAISALSGELSKLRTGRASSGMLDHIIVEISGVRMPLNQIAAVSVLDSK 143
           TI      +ME A++AL  E  +LRTGRAS+ ++D I V+  G   P+NQ+A+V+V DS+
Sbjct: 3   TILLETEERMEKAVAALDREFGRLRTGRASTSLVDSIKVDYYGTPTPINQLASVAVPDSR 62

Query: 144 TLSINPYDPNTLKNLESAIVSSPLGLAPRVDGERLIAVIPPLTKEHIQAMCKLVTKCCED 203
           T++I P+D      +E AI+ S LGL P  DG+ +   +PPLT+E  + + K+  K  ED
Sbjct: 63  TITIQPWDRGAFALVEKAIMQSDLGLTPINDGKIIRISMPPLTEERRKELVKVAKKYTED 122

Query: 204 SRQSIRRARQKAMDTVKKM--SSSYPKDDMKRLEKEVDELTKKFIKSAEDLCKAKEKEI 261
           ++ ++R  R+ A + +KKM    +  +DDMKR + EV +LT  F+  +E +   KEKEI
Sbjct: 123 AKVAVRNIRRDANEQIKKMEKDKAITEDDMKRGQDEVQKLTDAFVAKSEKVLAKKEKEI 181

[Close]
BLAST of Cp4.1LG01g25740 vs. Swiss-Prot
Match: RRF_GEOKA (Ribosome-recycling factor OS=Geobacillus kaustophilus (strain HTA426) GN=frr PE=3 SV=1)

HSP 1 Score: 122.1 bits (305), Expect = 9.1e-27
Identity = 67/174 (38.51%), Postives = 111/174 (63.79%), Query Frame = 1 

Query: 89  ASSQMEAAISALSGELSKLRTGRASSGMLDHIIVEISGVRMPLNQIAAVSVLDSKTLSIN 148
           A  +M+ A+ A + EL+ +R GRA++G+L+ + V+  GV  P+NQ+A++SV +++ L I 
Sbjct: 9   AKEKMDKAVQAFTRELASIRAGRANAGLLEKVTVDYYGVPTPINQLASISVPEARLLVIQ 68

Query: 149 PYDPNTLKNLESAIVSSPLGLAPRVDGERLIAVIPPLTKEHIQAMCKLVTKCCEDSRQSI 208
           PYD + +K +E AI++S LGL P  DG  +  VIPPLT+E  + + KLV K  ED++ ++
Sbjct: 69  PYDKSAIKEMEKAILASDLGLTPSNDGSVIRLVIPPLTEERRRELAKLVKKYSEDAKVAV 128

Query: 209 RRARQKAMDTVKKM--SSSYPKDDMKRLEKEVDELTKKFIKSAEDLCKAKEKEI 261
           R  R+ A D +KK+  +    +D+++    EV +LT   I   + + K KEKE+
Sbjct: 129 RNIRRDANDELKKLEKNGEITEDELRSYTDEVQKLTDDHIAKIDAITKEKEKEV 182

[Close]
BLAST of Cp4.1LG01g25740 vs. TrEMBL
Match: A0A0A0KA50_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G008020 PE=4 SV=1)

HSP 1 Score: 437.2 bits (1123), Expect = 1.4e-119
Identity = 230/263 (87.45%), Postives = 246/263 (93.54%), Query Frame = 1 

Query: 1   MAMFLKRSFSYRNFLLLRNFANPSRNLSFFVNDLCNSWTSEMPGAFALPPADFIRESRRG 60
           MA+FLKRSFSYRNF+LLRNFAN + N SF VN   +SWTS+    F LPP DFIRE+RRG
Sbjct: 1   MAIFLKRSFSYRNFILLRNFANQTCNFSFSVNHFSHSWTSDTSPRFPLPPPDFIRETRRG 60

Query: 61  FAKGRKSNESSTSMAEALPDIRPTIKANASSQMEAAISALSGELSKLRTGRASSGMLDHI 120
           FAKGRKSNESSTSMAEALPDIRPTIKANASSQMEA+I ALSGELSKLRTGRAS GMLDHI
Sbjct: 61  FAKGRKSNESSTSMAEALPDIRPTIKANASSQMEASIVALSGELSKLRTGRASPGMLDHI 120

Query: 121 IVEISGVRMPLNQIAAVSVLDSKTLSINPYDPNTLKNLESAIVSSPLGLAPRVDGERLIA 180
           IVE SGV++PLNQIAAVSVLDSKTLSINPYDP+TLKNLE+AI+SSPLG+APRVDGERLIA
Sbjct: 121 IVETSGVKLPLNQIAAVSVLDSKTLSINPYDPSTLKNLETAIISSPLGVAPRVDGERLIA 180

Query: 181 VIPPLTKEHIQAMCKLVTKCCEDSRQSIRRARQKAMDTVKKMSSSYPKDDMKRLEKEVDE 240
           VIPPLTKEHIQAMCKLVTKCCEDSRQSIRRARQKAMDTVKK+SSSYPKDD+KRLEKEVDE
Sbjct: 181 VIPPLTKEHIQAMCKLVTKCCEDSRQSIRRARQKAMDTVKKISSSYPKDDIKRLEKEVDE 240

Query: 241 LTKKFIKSAEDLCKAKEKEITGG 264
           LTKKFIKSAE+LCK KEKEITGG
Sbjct: 241 LTKKFIKSAEELCKGKEKEITGG 263

[Close]
BLAST of Cp4.1LG01g25740 vs. TrEMBL
Match: A0A0G4ANV4_9ROSI (Ribosome recycling factor OS=Erodium gruinum PE=2 SV=1)

HSP 1 Score: 319.3 bits (817), Expect = 4.3e-84
Identity = 174/266 (65.41%), Postives = 212/266 (79.70%), Query Frame = 1 

Query: 1   MAMFLKRSFSYRNFLLLRNFANPSRNLSFFVND---LCNSWTSEMPGAFALPPADFIRES 60
           MAM+L+R+ S+R+  L+R+    SRN S  +     LCNS  + + G       DF+RES
Sbjct: 1   MAMYLRRALSHRHVALIRSSVLHSRNFSGTILQPLRLCNSQPATISGI------DFLRES 60

Query: 61  RRGFAKGRKSNESSTSMAEALPDIRPTIKANASSQMEAAISALSGELSKLRTGRASSGML 120
           RRGFAKGRKS E S S ++   DI PT+K NA++QM+AA+ ALS ELSK+RTGRAS+GML
Sbjct: 61  RRGFAKGRKSKEDSGSASDVALDIGPTLKENAAAQMDAAVVALSRELSKIRTGRASAGML 120

Query: 121 DHIIVEISGVRMPLNQIAAVSVLDSKTLSINPYDPNTLKNLESAIVSSPLGLAPRVDGER 180
           DHIIVE  GV+MPLN+IA VSVLDSKTLS+NPYDP+TLK L+ AIVSSPLGL P+ DG+R
Sbjct: 121 DHIIVETGGVKMPLNRIALVSVLDSKTLSVNPYDPDTLKALQKAIVSSPLGLNPKEDGQR 180

Query: 181 LIAVIPPLTKEHIQAMCKLVTKCCEDSRQSIRRARQKAMDTVKKMSSSYPKDDMKRLEKE 240
           L+A IPPLTKEHIQAMCK+V+K  ED +QSIRRARQKA+DT+KK  SS PKD MKRLEKE
Sbjct: 181 LVAAIPPLTKEHIQAMCKVVSKSSEDVKQSIRRARQKALDTIKKAGSSVPKDSMKRLEKE 240

Query: 241 VDELTKKFIKSAEDLCKAKEKEITGG 264
           +DELTK F+KSA+D+CK+KEKEIT G
Sbjct: 241 IDELTKNFVKSADDICKSKEKEITQG 260

[Close]
BLAST of Cp4.1LG01g25740 vs. TrEMBL
Match: A0A0G4ANG2_9ROSI (Ribosome recycling factor OS=Hypseocharis bilobata PE=2 SV=1)

HSP 1 Score: 318.9 bits (816), Expect = 5.7e-84
Identity = 178/265 (67.17%), Postives = 215/265 (81.13%), Query Frame = 1 

Query: 1   MAMFLKRSFSYRNFLLLRNF-ANPSRNLSFFVNDLCNSWTSEMPGAFALPPADFIRESRR 60
           MAM+L+R+FSYRN  L+R+  A  +RN S   N + +   +E   A  LP  DF+ ESRR
Sbjct: 1   MAMYLRRAFSYRNLNLIRSSSALHTRNFS---NIIFSQKVAER--AVILPSIDFLAESRR 60

Query: 61  GFAKGRKS-NESSTSMAEALPDIRPTIKANASSQMEAAISALSGELSKLRTGRASSGMLD 120
           GFAKGRKS +++  +  +  PDI PT+K NA++QM+AAI ALS EL+KLRTGRAS+GMLD
Sbjct: 61  GFAKGRKSRDDTGANSVDVAPDIGPTVKENAAAQMDAAIVALSRELTKLRTGRASAGMLD 120

Query: 121 HIIVEISGVRMPLNQIAAVSVLDSKTLSINPYDPNTLKNLESAIVSSPLGLAPRVDGERL 180
           HI+VE  GV+MPL++IA VSVLDSKTLS+NPYDP+TLK L+ AIVSSPLGL PR DGERL
Sbjct: 121 HIVVETGGVKMPLSRIALVSVLDSKTLSVNPYDPDTLKALQKAIVSSPLGLNPREDGERL 180

Query: 181 IAVIPPLTKEHIQAMCKLVTKCCEDSRQSIRRARQKAMDTVKKMSSSYPKDDMKRLEKEV 240
           IA IPPLTKEHIQAMCK+V+K  ED +QSIRRARQKA+DT+KK  SS+PKD  KRLEKE+
Sbjct: 181 IAPIPPLTKEHIQAMCKVVSKASEDVKQSIRRARQKALDTIKKAGSSFPKDSAKRLEKEI 240

Query: 241 DELTKKFIKSAEDLCKAKEKEITGG 264
           DELTKKFIKSAED+CK+KEKEIT G
Sbjct: 241 DELTKKFIKSAEDMCKSKEKEITQG 260

[Close]
BLAST of Cp4.1LG01g25740 vs. TrEMBL
Match: A0A0G4APW2_9ROSI (Ribosome recycling factor OS=Geranium incanum PE=2 SV=1)

HSP 1 Score: 318.2 bits (814), Expect = 9.7e-84
Identity = 176/267 (65.92%), Postives = 213/267 (79.78%), Query Frame = 1 

Query: 1   MAMFLKRSFSYRNFLLLRNFANPSRNLSFFV---NDLCNSWTSEMPGAFALPPADFIRES 60
           M+++L+R+FS RNF L+R      R  S  +   + LCNS  +       +PP DF+RE+
Sbjct: 1   MSIYLRRAFSQRNFTLIRTSVLHHRYYSNIILQPHRLCNSQPA------TIPPFDFLRET 60

Query: 61  RRGFAKGRKSNESSTSMAEALP-DIRPTIKANASSQMEAAISALSGELSKLRTGRASSGM 120
           RRGFAKGRKS E S S +  +  DI PT+K NA+SQM AA+ +LS ELSKLRTGRAS+GM
Sbjct: 61  RRGFAKGRKSKEESGSTSVGVDIDIGPTVKENAASQMVAALDSLSRELSKLRTGRASAGM 120

Query: 121 LDHIIVEISGVRMPLNQIAAVSVLDSKTLSINPYDPNTLKNLESAIVSSPLGLAPRVDGE 180
           LDHIIVE SGV+MPL++IA VSVLDSKTLS+NPYDPNTLK L+ AIVSSPLGL P+ DG+
Sbjct: 121 LDHIIVETSGVKMPLSRIALVSVLDSKTLSVNPYDPNTLKALQKAIVSSPLGLNPKDDGQ 180

Query: 181 RLIAVIPPLTKEHIQAMCKLVTKCCEDSRQSIRRARQKAMDTVKKMSSSYPKDDMKRLEK 240
           RL+A IPPLTKEHIQAMCK+V+K  ED +QS+RRARQKA+DT+KK  SS PKD +KRLEK
Sbjct: 181 RLVAAIPPLTKEHIQAMCKVVSKSSEDVKQSVRRARQKALDTIKKAGSSLPKDSVKRLEK 240

Query: 241 EVDELTKKFIKSAEDLCKAKEKEITGG 264
           EVDELTKKFIK+AED+CK+KEKEIT G
Sbjct: 241 EVDELTKKFIKAAEDICKSKEKEITQG 261

[Close]
BLAST of Cp4.1LG01g25740 vs. TrEMBL
Match: W9SAR3_9ROSA (Ribosome-recycling factor OS=Morus notabilis GN=L484_017878 PE=4 SV=1)

HSP 1 Score: 317.8 bits (813), Expect = 1.3e-83
Identity = 178/274 (64.96%), Postives = 220/274 (80.29%), Query Frame = 1 

Query: 1   MAMFLKRSFSYRNFLLLRNFANPSRNLSFFVND-LCNSWTSEMPGAFALPPADFIRESRR 60
           MA+F++R+FSYRN LLLR+    S++L    N  LC+S  S      + P  DF+R++RR
Sbjct: 1   MAIFIRRAFSYRNVLLLRS----SQHLISSTNGRLCSS--SNTHNTLSPPNLDFLRDTRR 60

Query: 61  GFAKGRKSNESSTSMAEA--LPDIRPTIKANASSQMEAAISALSGELSKLRTGRASSGML 120
           GFAKGRKS E S S +    LPD+ PTIK+N +SQM++AI+ALS ELSKLRTGRASSGML
Sbjct: 61  GFAKGRKSKEDSGSSSTIVELPDLGPTIKSNVTSQMDSAIAALSTELSKLRTGRASSGML 120

Query: 121 DHIIVEISGVRMPLNQIAAVSVLDSKTLSINPYDPNTLKNLESAIVSSPLGLAPRVDGER 180
           DHI+V++  V++PLNQIA VSV+DSKTLS+NP+DP+ LK+LE AI+SSPLGL+P+VDGER
Sbjct: 121 DHIMVDLGDVKLPLNQIAVVSVIDSKTLSVNPFDPSALKSLEKAIISSPLGLSPKVDGER 180

Query: 181 LIAVIPPLTKEHI------------QAMCKLVTKCCEDSRQSIRRARQKAMDTVKKMSSS 240
           LIAVIPPLT+EHI            QA+CK+V K CED++QSIRRARQ+AMDT+KKM SS
Sbjct: 181 LIAVIPPLTQEHIQFLRYLISRNICQAVCKVVMKSCEDAKQSIRRARQRAMDTIKKMQSS 240

Query: 241 YPKDDMKRLEKEVDELTKKFIKSAEDLCKAKEKE 260
           YPKDD+KRLEKEV+ELTKKF K+AEDLCKAKEKE
Sbjct: 241 YPKDDIKRLEKEVEELTKKFTKTAEDLCKAKEKE 268

[Close]
BLAST of Cp4.1LG01g25740 vs. TAIR10
Match: AT3G01800.1 (AT3G01800.1 Ribosome recycling factor)

HSP 1 Score: 304.3 bits (778), Expect = 7.3e-83
Identity = 173/269 (64.31%), Postives = 209/269 (77.70%), Query Frame = 1 

Query: 1   MAMFLKRSFSYRN---FLLLRNFANPSRNLSFFVNDLCNSWTSEMPGA----FALPPADF 60
           MAMF++R+ S RN   FL   +    SR+ SF      +S    M G     F L   DF
Sbjct: 2   MAMFVRRALSSRNAIGFLRRSSVVVQSRDFSFI-----SSPNLMMMGGRDLQFDLSMPDF 61

Query: 61  IRESRRGFAKGRKS-NESSTSMAEALPDIRPTIKANASSQMEAAISALSGELSKLRTGRA 120
           +R+SRRGFAKG+KS ++S T M +A PDI PT+KA ASSQMEAAI ALS +L+KLRTGRA
Sbjct: 62  LRDSRRGFAKGKKSKDDSGTGMVDAAPDIGPTVKAAASSQMEAAIDALSRDLTKLRTGRA 121

Query: 121 SSGMLDHIIVEISGVRMPLNQIAAVSVLDSKTLSINPYDPNTLKNLESAIVSSPLGLAPR 180
           + GMLDHI+VE  GV+MPLN +A VSVLD KTLS+NPYDP+T+K LE AIV+SPLGL P+
Sbjct: 122 APGMLDHIVVETGGVKMPLNHLALVSVLDPKTLSVNPYDPDTVKELEKAIVASPLGLNPK 181

Query: 181 VDGERLIAVIPPLTKEHIQAMCKLVTKCCEDSRQSIRRARQKAMDTVKKMSSSYPKDDMK 240
           +DG+RL+A IP LTKEHIQAMCK+VTK  E  +QSIRRARQKA+DT+KK  SS PKD++K
Sbjct: 182 LDGQRLVASIPALTKEHIQAMCKIVTKSSEVVKQSIRRARQKALDTIKKAGSSLPKDEVK 241

Query: 241 RLEKEVDELTKKFIKSAEDLCKAKEKEIT 262
           RLEKEVDELTKKF+KSAED+CK+KEKEIT
Sbjct: 242 RLEKEVDELTKKFVKSAEDMCKSKEKEIT 265

[Close]
BLAST of Cp4.1LG01g25740 vs. TAIR10
Match: AT3G63190.1 (AT3G63190.1 ribosome recycling factor, chloroplast precursor)

HSP 1 Score: 105.1 bits (261), Expect = 6.5e-23
Identity = 62/181 (34.25%), Postives = 105/181 (58.01%), Query Frame = 1 

Query: 82  RPTIKANASSQMEAAISALSGELSKLRTGRASSGMLDHIIVEISGVRMPLNQIAAVSVLD 141
           +  I+ +  S+ME  I  L    + +RTGR+++ MLD I VE  G  + L  IA +S  D
Sbjct: 92  KSAIETDVKSKMEKTIETLRTSFNSIRTGRSNAAMLDKIEVEYYGSPVSLKSIAQISTPD 151

Query: 142 SKTLSINPYDPNTLKNLESAIVSSPLGLAPRVDGERLIAVIPPLTKEHIQAMCKLVTKCC 201
             +L + PYD ++LK +E AIV+S LG+ P  DG+ +   +PPLT +  + + K+V K  
Sbjct: 152 GSSLLLQPYDKSSLKAIEKAIVNSDLGVTPNNDGDVIRLSLPPLTSDRRKELSKVVAKQS 211

Query: 202 EDSRQSIRRARQKAMDTVKKM--SSSYPKDDMKRLEKEVDELTKKFIKSAEDLCKAKEKE 261
           E+ + ++R  R+ A+ +  K+       +D++K L  ++ +L   ++K  E+L K KEKE
Sbjct: 212 EEGKVALRNIRRDALKSYDKLEKEKKLSEDNVKDLSSDLQKLIDVYMKKIEELYKQKEKE 271

[Close]
BLAST of Cp4.1LG01g25740 vs. NCBI nr
Match: gi|659081500|ref|XP_008441363.1| (PREDICTED: ribosome-recycling factor, chloroplastic [Cucumis melo])

HSP 1 Score: 444.1 bits (1141), Expect = 1.7e-121
Identity = 233/263 (88.59%), Postives = 249/263 (94.68%), Query Frame = 1 

Query: 1   MAMFLKRSFSYRNFLLLRNFANPSRNLSFFVNDLCNSWTSEMPGAFALPPADFIRESRRG 60
           MAMFLKRSFSYRNF++LRNFAN + N SF +N   NSWTS+    FALPP+DFIRESRRG
Sbjct: 1   MAMFLKRSFSYRNFIILRNFANQTCNFSFSLNHFSNSWTSDTSAGFALPPSDFIRESRRG 60

Query: 61  FAKGRKSNESSTSMAEALPDIRPTIKANASSQMEAAISALSGELSKLRTGRASSGMLDHI 120
           FAKGRKSNESSTS+AEAL DIRPTIK+NASSQMEA+I ALSGELSKLRTGRASSGMLDHI
Sbjct: 61  FAKGRKSNESSTSIAEALTDIRPTIKSNASSQMEASIVALSGELSKLRTGRASSGMLDHI 120

Query: 121 IVEISGVRMPLNQIAAVSVLDSKTLSINPYDPNTLKNLESAIVSSPLGLAPRVDGERLIA 180
           IVE SGV++PLNQIAAVSVLDSKTLSINPYDP+TLKNLESAI+SSPLG+APRVDGERLIA
Sbjct: 121 IVETSGVKLPLNQIAAVSVLDSKTLSINPYDPSTLKNLESAIISSPLGVAPRVDGERLIA 180

Query: 181 VIPPLTKEHIQAMCKLVTKCCEDSRQSIRRARQKAMDTVKKMSSSYPKDDMKRLEKEVDE 240
           VIPPLTKEHIQAMCKLVTKCCEDSRQSIRRARQKAMDTVKK+SSSYPKDDMKRLEKEVDE
Sbjct: 181 VIPPLTKEHIQAMCKLVTKCCEDSRQSIRRARQKAMDTVKKISSSYPKDDMKRLEKEVDE 240

Query: 241 LTKKFIKSAEDLCKAKEKEITGG 264
           LTKKFIKSAE+LCKAKEKEITGG
Sbjct: 241 LTKKFIKSAEELCKAKEKEITGG 263

[Close]
BLAST of Cp4.1LG01g25740 vs. NCBI nr
Match: gi|778709279|ref|XP_004138478.2| (PREDICTED: ribosome-recycling factor, chloroplastic [Cucumis sativus])

HSP 1 Score: 437.2 bits (1123), Expect = 2.0e-119
Identity = 230/263 (87.45%), Postives = 246/263 (93.54%), Query Frame = 1 

Query: 1   MAMFLKRSFSYRNFLLLRNFANPSRNLSFFVNDLCNSWTSEMPGAFALPPADFIRESRRG 60
           MA+FLKRSFSYRNF+LLRNFAN + N SF VN   +SWTS+    F LPP DFIRE+RRG
Sbjct: 1   MAIFLKRSFSYRNFILLRNFANQTCNFSFSVNHFSHSWTSDTSPRFPLPPPDFIRETRRG 60

Query: 61  FAKGRKSNESSTSMAEALPDIRPTIKANASSQMEAAISALSGELSKLRTGRASSGMLDHI 120
           FAKGRKSNESSTSMAEALPDIRPTIKANASSQMEA+I ALSGELSKLRTGRAS GMLDHI
Sbjct: 61  FAKGRKSNESSTSMAEALPDIRPTIKANASSQMEASIVALSGELSKLRTGRASPGMLDHI 120

Query: 121 IVEISGVRMPLNQIAAVSVLDSKTLSINPYDPNTLKNLESAIVSSPLGLAPRVDGERLIA 180
           IVE SGV++PLNQIAAVSVLDSKTLSINPYDP+TLKNLE+AI+SSPLG+APRVDGERLIA
Sbjct: 121 IVETSGVKLPLNQIAAVSVLDSKTLSINPYDPSTLKNLETAIISSPLGVAPRVDGERLIA 180

Query: 181 VIPPLTKEHIQAMCKLVTKCCEDSRQSIRRARQKAMDTVKKMSSSYPKDDMKRLEKEVDE 240
           VIPPLTKEHIQAMCKLVTKCCEDSRQSIRRARQKAMDTVKK+SSSYPKDD+KRLEKEVDE
Sbjct: 181 VIPPLTKEHIQAMCKLVTKCCEDSRQSIRRARQKAMDTVKKISSSYPKDDIKRLEKEVDE 240

Query: 241 LTKKFIKSAEDLCKAKEKEITGG 264
           LTKKFIKSAE+LCK KEKEITGG
Sbjct: 241 LTKKFIKSAEELCKGKEKEITGG 263

[Close]
BLAST of Cp4.1LG01g25740 vs. NCBI nr
Match: gi|694392399|ref|XP_009371676.1| (PREDICTED: ribosome-recycling factor, chloroplastic [Pyrus x bretschneideri])

HSP 1 Score: 329.3 bits (843), Expect = 6.0e-87
Identity = 180/266 (67.67%), Postives = 215/266 (80.83%), Query Frame = 1 

Query: 1   MAMFLKRSFSYRNFLLLRNFANPSRNLSFFVNDLCNSWTSEMPGAFALPPADFIRESRRG 60
           MA+FL+R+ S+RN LLLR+ A  SR L       CNS         +LP  +F+RESRRG
Sbjct: 1   MAIFLRRALSFRNVLLLRSSALLSRELR-----QCNSAPPHR--VLSLPALEFVRESRRG 60

Query: 61  FAKGR---KSNESSTSMAEALPDIRPTIKANASSQMEAAISALSGELSKLRTGRASSGML 120
           FAKGR   K +ES+ S  E LP++ PTIKANA+S MEAAI+AL+ ELSKLRTGRAS GML
Sbjct: 61  FAKGRNKKKEDESAASTVEILPNMGPTIKANATSHMEAAIAALTAELSKLRTGRASPGML 120

Query: 121 DHIIVEISGVRMPLNQIAAVSVLDSKTLSINPYDPNTLKNLESAIVSSPLGLAPRVDGER 180
           DHIIVE  GV++PL+QIAAVSV+DSKTLSINP+DP  L NLE+AIV SPLGL P+VDG+R
Sbjct: 121 DHIIVETGGVKLPLHQIAAVSVIDSKTLSINPFDPTALSNLETAIVESPLGLNPKVDGDR 180

Query: 181 LIAVIPPLTKEHIQAMCKLVTKCCEDSRQSIRRARQKAMDTVKKMSSSYPKDDMKRLEKE 240
           LIA IPPLTKEH+QA+CK+VTK  ED +QSIRR RQKAMDT+KK++ +YPKDD+KR EKE
Sbjct: 181 LIAAIPPLTKEHVQAICKVVTKSAEDGKQSIRRGRQKAMDTIKKLTKNYPKDDLKRWEKE 240

Query: 241 VDELTKKFIKSAEDLCKAKEKEITGG 264
           VDELTKKF+K+AEDLCKAKEKEI+ G
Sbjct: 241 VDELTKKFVKTAEDLCKAKEKEISSG 259

[Close]
BLAST of Cp4.1LG01g25740 vs. NCBI nr
Match: gi|658052756|ref|XP_008362112.1| (PREDICTED: ribosome-recycling factor, chloroplastic-like [Malus domestica])

HSP 1 Score: 328.2 bits (840), Expect = 1.3e-86
Identity = 179/266 (67.29%), Postives = 215/266 (80.83%), Query Frame = 1 

Query: 1   MAMFLKRSFSYRNFLLLRNFANPSRNLSFFVNDLCNSWTSEMPGAFALPPADFIRESRRG 60
           MA+FL+R+ S+RN LLLR+ A  SR L       CNS +       +LP  +F+RESRRG
Sbjct: 1   MAIFLRRTLSFRNVLLLRSSALLSRELR-----QCNSASPHR--VLSLPALEFVRESRRG 60

Query: 61  FAKGR---KSNESSTSMAEALPDIRPTIKANASSQMEAAISALSGELSKLRTGRASSGML 120
           FAKGR   K +ES+ S  E LP++ PTIKANA+S MEAAI+AL+ ELSKLRTGRAS GML
Sbjct: 61  FAKGRNKKKEDESAASTVEILPNMGPTIKANATSHMEAAIAALTAELSKLRTGRASPGML 120

Query: 121 DHIIVEISGVRMPLNQIAAVSVLDSKTLSINPYDPNTLKNLESAIVSSPLGLAPRVDGER 180
           DHIIVE  GV++PL+QIAAVSV+DSKTLSINP+DP  L NLE+AIV SPLGL P+VDG+R
Sbjct: 121 DHIIVETGGVKLPLHQIAAVSVIDSKTLSINPFDPTALSNLETAIVESPLGLNPKVDGDR 180

Query: 181 LIAVIPPLTKEHIQAMCKLVTKCCEDSRQSIRRARQKAMDTVKKMSSSYPKDDMKRLEKE 240
           LI  IPPLTKEH+QA+CK+VTK  ED +QSIRR RQKAMDT+KK++ +YPKDD+KR EKE
Sbjct: 181 LIXAIPPLTKEHVQAICKVVTKSAEDGKQSIRRGRQKAMDTIKKLTKNYPKDDLKRWEKE 240

Query: 241 VDELTKKFIKSAEDLCKAKEKEITGG 264
           VDELTKKF+K+AEDLCKAKEKEI+ G
Sbjct: 241 VDELTKKFVKTAEDLCKAKEKEISSG 259

[Close]
BLAST of Cp4.1LG01g25740 vs. NCBI nr
Match: gi|836713581|gb|AKM76777.1| (ribosome recycling factor [Erodium gruinum])

HSP 1 Score: 319.3 bits (817), Expect = 6.2e-84
Identity = 174/266 (65.41%), Postives = 212/266 (79.70%), Query Frame = 1 

Query: 1   MAMFLKRSFSYRNFLLLRNFANPSRNLSFFVND---LCNSWTSEMPGAFALPPADFIRES 60
           MAM+L+R+ S+R+  L+R+    SRN S  +     LCNS  + + G       DF+RES
Sbjct: 1   MAMYLRRALSHRHVALIRSSVLHSRNFSGTILQPLRLCNSQPATISGI------DFLRES 60

Query: 61  RRGFAKGRKSNESSTSMAEALPDIRPTIKANASSQMEAAISALSGELSKLRTGRASSGML 120
           RRGFAKGRKS E S S ++   DI PT+K NA++QM+AA+ ALS ELSK+RTGRAS+GML
Sbjct: 61  RRGFAKGRKSKEDSGSASDVALDIGPTLKENAAAQMDAAVVALSRELSKIRTGRASAGML 120

Query: 121 DHIIVEISGVRMPLNQIAAVSVLDSKTLSINPYDPNTLKNLESAIVSSPLGLAPRVDGER 180
           DHIIVE  GV+MPLN+IA VSVLDSKTLS+NPYDP+TLK L+ AIVSSPLGL P+ DG+R
Sbjct: 121 DHIIVETGGVKMPLNRIALVSVLDSKTLSVNPYDPDTLKALQKAIVSSPLGLNPKEDGQR 180

Query: 181 LIAVIPPLTKEHIQAMCKLVTKCCEDSRQSIRRARQKAMDTVKKMSSSYPKDDMKRLEKE 240
           L+A IPPLTKEHIQAMCK+V+K  ED +QSIRRARQKA+DT+KK  SS PKD MKRLEKE
Sbjct: 181 LVAAIPPLTKEHIQAMCKVVSKSSEDVKQSIRRARQKALDTIKKAGSSVPKDSMKRLEKE 240

Query: 241 VDELTKKFIKSAEDLCKAKEKEITGG 264
           +DELTK F+KSA+D+CK+KEKEIT G
Sbjct: 241 IDELTKNFVKSADDICKSKEKEITQG 260

The following BLAST results are available for this feature:
BLAST of Cp4.1LG01g25740 vs. Swiss-Prot
Match NameE-valueIdentityDescription
RRF_BACSK1.1e-2738.76Ribosome-recycling factor OS=Bacillus clausii (strain KSM-K16) GN=frr PE=3 SV=1[more]
RRF_BACHD1.8e-2741.14Ribosome-recycling factor OS=Bacillus halodurans (strain ATCC BAA-125 / DSM 1819... [more]
RRF_DESVM3.1e-2739.11Ribosome-recycling factor OS=Desulfovibrio vulgaris (strain Miyazaki F / DSM 196... [more]
RRF_DESAG5.4e-2740.22Ribosome-recycling factor OS=Desulfovibrio alaskensis (strain G20) GN=frr PE=3 S... [more]
RRF_GEOKA9.1e-2738.51Ribosome-recycling factor OS=Geobacillus kaustophilus (strain HTA426) GN=frr PE=... [more]
BLAST of Cp4.1LG01g25740 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KA50_CUCSA1.4e-11987.45Uncharacterized protein OS=Cucumis sativus GN=Csa_6G008020 PE=4 SV=1[more]
A0A0G4ANV4_9ROSI4.3e-8465.41Ribosome recycling factor OS=Erodium gruinum PE=2 SV=1[more]
A0A0G4ANG2_9ROSI5.7e-8467.17Ribosome recycling factor OS=Hypseocharis bilobata PE=2 SV=1[more]
A0A0G4APW2_9ROSI9.7e-8465.92Ribosome recycling factor OS=Geranium incanum PE=2 SV=1[more]
W9SAR3_9ROSA1.3e-8364.96Ribosome-recycling factor OS=Morus notabilis GN=L484_017878 PE=4 SV=1[more]
BLAST of Cp4.1LG01g25740 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G01800.17.3e-8364.31 Ribosome recycling factor[more]
AT3G63190.16.5e-2334.25 ribosome recycling factor, chloroplast precursor[more]
BLAST of Cp4.1LG01g25740 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659081500|ref|XP_008441363.1|1.7e-12188.59PREDICTED: ribosome-recycling factor, chloroplastic [Cucumis melo][more]
gi|778709279|ref|XP_004138478.2|2.0e-11987.45PREDICTED: ribosome-recycling factor, chloroplastic [Cucumis sativus][more]
gi|694392399|ref|XP_009371676.1|6.0e-8767.67PREDICTED: ribosome-recycling factor, chloroplastic [Pyrus x bretschneideri][more]
gi|658052756|ref|XP_008362112.1|1.3e-8667.29PREDICTED: ribosome-recycling factor, chloroplastic-like [Malus domestica][more]
gi|836713581|gb|AKM76777.1|6.2e-8465.41ribosome recycling factor [Erodium gruinum][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Vocabulary: INTERPRO
TermDefinition
IPR023584Ribosome_recyc_fac_dom
IPR002661Ribosome_recyc_fac
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
cellular_component GO:0005739 mitochondrion
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG01g25740.1Cp4.1LG01g25740.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002661Ribosome recycling factorPANTHERPTHR20982RIBOSOME RECYCLING FACTORcoord: 17..263
score: 1.0
IPR023584Ribosome recycling factor domainGENE3DG3DSA:1.10.132.20coord: 146..261
score: 9.9
IPR023584Ribosome recycling factor domainPFAMPF01765RRFcoord: 102..260
score: 1.4
IPR023584Ribosome recycling factor domainunknownSSF55194Ribosome recycling factor, RRFcoord: 84..261
score: 8.37
NoneNo IPR availableunknownCoilCoilcoord: 231..251
scor

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG01g25740CmaCh04G029680Cucurbita maxima (Rimu)cmacpeB721
Cp4.1LG01g25740CmoCh04G030870Cucurbita moschata (Rifu)cmocpeB673
Cp4.1LG01g25740Cla006522Watermelon (97103) v1cpewmB457
Cp4.1LG01g25740MELO3C008210Melon (DHL92) v3.5.1cpemeB398
Cp4.1LG01g25740ClCG11G006950Watermelon (Charleston Gray)cpewcgB366
Cp4.1LG01g25740Lsi03G003790Bottle gourd (USVL1VR-Ls)cpelsiB344
Cp4.1LG01g25740MELO3C008210.2Melon (DHL92) v3.6.1cpemedB463
Cp4.1LG01g25740Bhi04G001968Wax gourdcpewgoB0534
Cp4.1LG01g25740Carg06043Silver-seed gourdcarcpeB0034
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG01g25740Wax gourdcpewgoB0525
Cp4.1LG01g25740Cucurbita pepo (Zucchini)cpecpeB199
Cp4.1LG01g25740Cucumber (Gy14) v1cgycpeB0164
Cp4.1LG01g25740Cucurbita maxima (Rimu)cmacpeB317
Cp4.1LG01g25740Cucurbita moschata (Rifu)cmocpeB279
Cp4.1LG01g25740Wild cucumber (PI 183967)cpecpiB385
Cp4.1LG01g25740Cucumber (Chinese Long) v2cpecuB386
Cp4.1LG01g25740Bottle gourd (USVL1VR-Ls)cpelsiB339
Cp4.1LG01g25740Watermelon (Charleston Gray)cpewcgB355
Cp4.1LG01g25740Watermelon (97103) v1cpewmB461
Cp4.1LG01g25740Melon (DHL92) v3.5.1cpemeB400
Cp4.1LG01g25740Cucumber (Gy14) v2cgybcpeB214
Cp4.1LG01g25740Melon (DHL92) v3.6.1cpemedB465
Cp4.1LG01g25740Silver-seed gourdcarcpeB1408
Cp4.1LG01g25740Cucumber (Chinese Long) v3cpecucB0482