Cp4.1LG01g25420 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG01g25420
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionTether containing UBX domain for GLUT4
LocationCp4.1LG01 : 20859724 .. 20863266 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AGAAGCTGGAATTCAAAGGTGTGGTAGGCACGTGTGAAGCAACTTGCGGAAGGGGGTGGCCAGCTAGGAATTCTGATTCCCCTCGAGAGTGCCCGCATCAACCAGCAAGAAACGGGAGCGAAACCTGAAGAAAAAGGGAAGTATTTATATGAGACTCGCCTCTCTTCTTCCTTTCCAAATTAGTGTTCTTTGCTCATGGTTTGGGATGATTCTTACTCTCTAGCACTTAAGAGAAGGCGGTTTACCTACAACCACATCAACTCCATGGCTGACGAATCAGCTAAGGTCTTTTCTCCAATTCTTTCTCTACACCCACAAATTACCTTTCTCAATTCGCTTTCTTGCCTCTTTCTTCTCTCTCTCTCTTCCAGTCGCTTACACTTCGCTCTGATTGTAATAGCCCTATGCTTGATCCAGTGATTTGATATTGTTGATTGGGAATTCTGGGTATTCTTTAGATTTGTATTTTTGTCTTTCTATTCTACTAGCATCGTGTTTTTCTGTTCTTTTCCTTCTTTTTACTCTATGATTGTGGACATACTGGCCTTTCCCCCTTTCTTAAACTGGGTTTCCATTGTTTTTTTAAATGGAGGGTGAGGAGAAGGATCATGCTCGTGGTGCTTAAACGAATTATATTGATAAGATTTTTATGGGTAACCTTCTTGGATTATTTGGTGTACACACTCATTGTCTGGTAATAAGCTATAATTTTGTTCTCATATATGGCGATCTCTGGTGTAAATCTGTAATGGTTCTGCAAACTTGGTCCATTTGAATGATATCTGCTGCTGTTGGTATAGAATGCTCACTATTTTTTATCCCCACCGGGGATTTTTGACGTTAGGCCAAGCTCCTGGGTGCGAAAGAAAAATTTGGGCGAGAGATCCGAGTGTTTGAAACATTGCCACCGTCTTCATCAAGTGATGAATTGCCCAACACTGGTACAAATTAATTTAAGCTTGCATCCTTGGATGGCTCTGGACATAGTTTACAGACAAATGGATTTTAGATCATCCTTGCAAGTATAACTCATTCTATATGTGCCCTTATTCTTTTTAGGAGGAGAGACAGATGACTTTTATGAGTTTACAGCAGAAGACTACTACCGAGTATTAGCAAGCCGAAAGGATGGTAATTTGTGATTATTTTCATTACTTCAGCAGTAGTAATTGAAGCGCACAATTTTCTTTTGGTTCCTAAGATTTGCTGCATACAATGCTTTGATGCTTGTCACTTTTTCCCTTGATATTGCTGGCATTATCATTTAGGAGGAGTATTTTTCGTAGGTAATAGACAATTTGAAACATGTTACTTCAACAATTTCTTAGTTGATCTTTATTCTTATTTCGTTAACTCCAAAAATCCCAACGATTATCTGGGAAGATTGTATGAATGTGAGATCCCACGTCTTGGAAAGGGAAACAAAGCATTCTTTATAAGGGTGTGGAAACCTCTCCCTAGTAGACGTGTTTTAAAACCTTGAGGGGAAAGTCCAAAGAGGATAACATCTATTAGCGGTGGGCTTGGGCTTGGGCTGTTACAAATGGTATCAGAGCCAGACATTGGGCGGTATGTCAACGAAGATGCTGGGTCCCTAAGGGGGGTGGATTGTGAGATCTCACATCGGTTGGAGAGGGGAATGAAACATTTCTTATAAGAGTGGAAACCTCTCCCTAGTAGACGCGTTTTAAAACCTTGAGGGGAAGTCCTTGAAGGGAAAACCGAAAGAGGATAATATTTACTAGCGGTGGGCTTGGGCTGTTACAATAAATATGGATACTTGACAAGTTGGCATCCTTTAGGAGTTTCATGCATGCGCAACACACATGTATGTATGTATGTATATATGTATGTAGGTGACACATTGTTTCTGCTAACACATATACCTTTATAGAAATAGTAATGCTCTATGTTTCCATCCCGGCAGAGAAATATTTAAAAACACGGAAAATCAGAGAGGCAGAAGAGGCAGCTCGCAAGTCAAGGATAACAAAGGTGCTACCAAGACTTTATAGCTAAACTTCTCCTCGATAACCTGTTGTTTTTTCTTACAGCATTGGTATGCTTAGCAGATTACAACTTCTAACCTGACCATCCTGCTGCAGGTTAGTGTTCGGGTTCGCTTTCCTGACAATCACACATTAGAGGCAACTTTCCATCCATCCGAAACAATGCAGGCCTTGGTTGATCTTCTTACCAAAGTAGTTGCTCAGCCAGAACTACCATTTTATATTTGTATGTCTAAAGAACTCAGATCAATCTGATATTCACCTATTTTCTGTTGTTTCTTTGAAGAGTTCTTAAGAGTTGATTCATCATTACCTAACATTGCAGATACCGCGCCTCCCAAGAAACAGATAAAAGATTTGACACAGGATTTTTATTCTGCTGGCTTTGTTCCTGGTGCAATTGTTTACTTTTCGTACGATCAACCTGAAGGTTTGGAATACAAAATTCACCCTGCTTATTTGAAGTTTTTGTGGCTTGACTAAGTACTGTATGCGCTTTAGTTTTCAAAACTGGATTTACTTATTCATATGGTATTCAACATATTTTGGCTCGACTGTGGTATTCAATATTATATCATCTTGGATTATTGAATTCTAATTCTTAGTCTGTCTATTTCTTGTACTTTTTATAGTTCGTTAGGAATCTTCCCTCTCATTTTACTGGATGTGAGAAAACGGCCAGTGGATGATTCTAAACTTTTAAACGAAAACGTTCTATGTAATTCAGATACCTGTTCCAAATTAAGTTTGAATATGTATTAACTTATTCTTCATTTGTTTCATGTTTTCTATATGCGACATCCTGCTATATAGAGTTTCTTAGATATATACATATGCATATATGCGTTTATAGAGCTTCTTATATGATGGAGATCTAATTTTGATATCCATATCATGCATTTATTTTCTTTTTAGCTTATGATTTCAGACAAGTGTCTTCTTATCTCAACTCTTTATATACGGAAATGATATCATGATGAGGTCAAATGTGCATTTCTGGTTCTAATATCTTTTACTTGAGATTGCTTTGAACTGTGATGCAATGCAACTGGTTCTCAGAATTATTATGTTGAACACAGGCGAGGCAGTTGGTTCAGTGGCTTACCTTAATGAGGAGGCCATGTCTTTGAAAGGTATCGAAATCGCGAGCGAAGAAGACGAGCCTGTATTGGCTGTTGCGGAGCCTGAAACAGCACCCCCTCCCCCTGTTTCTGACCCTGTTGTCAAGGAAACCAAGCCTACTAATAAGAAAGCTGTCAAACCCAAGTGGCTGAAAATGTAAAGACTGCTGCTGCTGCTGCGTGGTGAAAACTGCTCATGAGTAAACTAGATTTTGTGTTCGTTGTGTTTGAACTTGTTAGTACCCTCTTATTTTTATGTTTAATGGTGATCATAGATTCTCTTCAACCTTCATTTTCTTTTTTTTTTTTCTTGGTTCTATGCTTTTATGTTGCAAATGTTTCATATAGACAAACAAATATTTTAAATCTTACGAGATATTTGTGTGGATCAATCTAACGAAGATTTAAGTCGC

mRNA sequence

AGAAGCTGGAATTCAAAGGTGTGGTAGGCACGTGTGAAGCAACTTGCGGAAGGGGGTGGCCAGCTAGGAATTCTGATTCCCCTCGAGAGTGCCCGCATCAACCAGCAAGAAACGGGAGCGAAACCTGAAGAAAAAGGGAAGTATTTATATGAGACTCGCCTCTCTTCTTCCTTTCCAAATTAGTGTTCTTTGCTCATGGTTTGGGATGATTCTTACTCTCTAGCACTTAAGAGAAGGCGGTTTACCTACAACCACATCAACTCCATGGCTGACGAATCAGCTAAGGCCAAGCTCCTGGGTGCGAAAGAAAAATTTGGGCGAGAGATCCGAGTGTTTGAAACATTGCCACCGTCTTCATCAAGTGATGAATTGCCCAACACTGGAGGAGAGACAGATGACTTTTATGAGTTTACAGCAGAAGACTACTACCGAGTATTAGCAAGCCGAAAGGATGAGAAATATTTAAAAACACGGAAAATCAGAGAGGCAGAAGAGGCAGCTCGCAAGTCAAGGATAACAAAGGTTAGTGTTCGGGTTCGCTTTCCTGACAATCACACATTAGAGGCAACTTTCCATCCATCCGAAACAATGCAGGCCTTGGTTGATCTTCTTACCAAAGTAGTTGCTCAGCCAGAACTACCATTTTATATTTATACCGCGCCTCCCAAGAAACAGATAAAAGATTTGACACAGGATTTTTATTCTGCTGGCTTTGTTCCTGGTGCAATTGTTTACTTTTCGTACGATCAACCTGAAGGCGAGGCAGTTGGTTCAGTGGCTTACCTTAATGAGGAGGCCATGTCTTTGAAAGGTATCGAAATCGCGAGCGAAGAAGACGAGCCTGTATTGGCTGTTGCGGAGCCTGAAACAGCACCCCCTCCCCCTGTTTCTGACCCTGTTGTCAAGGAAACCAAGCCTACTAATAAGAAAGCTGTCAAACCCAAGTGGCTGAAAATGTAAAGACTGCTGCTGCTGCTGCGTGGTGAAAACTGCTCATGAGTAAACTAGATTTTGTGTTCGTTGTGTTTGAACTTGTTAGTACCCTCTTATTTTTATGTTTAATGGTGATCATAGATTCTCTTCAACCTTCATTTTCTTTTTTTTTTTTCTTGGTTCTATGCTTTTATGTTGCAAATGTTTCATATAGACAAACAAATATTTTAAATCTTACGAGATATTTGTGTGGATCAATCTAACGAAGATTTAAGTCGC

Coding sequence (CDS)

ATGGTTTGGGATGATTCTTACTCTCTAGCACTTAAGAGAAGGCGGTTTACCTACAACCACATCAACTCCATGGCTGACGAATCAGCTAAGGCCAAGCTCCTGGGTGCGAAAGAAAAATTTGGGCGAGAGATCCGAGTGTTTGAAACATTGCCACCGTCTTCATCAAGTGATGAATTGCCCAACACTGGAGGAGAGACAGATGACTTTTATGAGTTTACAGCAGAAGACTACTACCGAGTATTAGCAAGCCGAAAGGATGAGAAATATTTAAAAACACGGAAAATCAGAGAGGCAGAAGAGGCAGCTCGCAAGTCAAGGATAACAAAGGTTAGTGTTCGGGTTCGCTTTCCTGACAATCACACATTAGAGGCAACTTTCCATCCATCCGAAACAATGCAGGCCTTGGTTGATCTTCTTACCAAAGTAGTTGCTCAGCCAGAACTACCATTTTATATTTATACCGCGCCTCCCAAGAAACAGATAAAAGATTTGACACAGGATTTTTATTCTGCTGGCTTTGTTCCTGGTGCAATTGTTTACTTTTCGTACGATCAACCTGAAGGCGAGGCAGTTGGTTCAGTGGCTTACCTTAATGAGGAGGCCATGTCTTTGAAAGGTATCGAAATCGCGAGCGAAGAAGACGAGCCTGTATTGGCTGTTGCGGAGCCTGAAACAGCACCCCCTCCCCCTGTTTCTGACCCTGTTGTCAAGGAAACCAAGCCTACTAATAAGAAAGCTGTCAAACCCAAGTGGCTGAAAATGTAA

Protein sequence

MVWDDSYSLALKRRRFTYNHINSMADESAKAKLLGAKEKFGREIRVFETLPPSSSSDELPNTGGETDDFYEFTAEDYYRVLASRKDEKYLKTRKIREAEEAARKSRITKVSVRVRFPDNHTLEATFHPSETMQALVDLLTKVVAQPELPFYIYTAPPKKQIKDLTQDFYSAGFVPGAIVYFSYDQPEGEAVGSVAYLNEEAMSLKGIEIASEEDEPVLAVAEPETAPPPPVSDPVVKETKPTNKKAVKPKWLKM
Homology
[Close]
BLAST of Cp4.1LG01g25420 vs. Swiss-Prot
Match: PUX1_ARATH (Plant UBX domain-containing protein 1 OS=Arabidopsis thaliana GN=PUX1 PE=1 SV=1)

HSP 1 Score: 268.9 bits (686), Expect = 5.8e-71
Identity = 145/254 (57.09%), Postives = 180/254 (70.87%), Query Frame = 1 

Query: 1   MVWDDSYSLALKRRRFTYNHINSMADESAKAKLLGAKEKFGREIRVFETLPPSSSSDELP 60
           M  DD     LKRRR      +  A  SA+AK+   +EK GRE+RVFET   S    ++ 
Sbjct: 1   MFVDDPSLHTLKRRRLEITD-SMEASSSAQAKIADMREKLGREVRVFETSSISQRPSQVS 60

Query: 61  NTGGETDDFYEFTAEDYYRVLASRKDEKYLKTRKIREAEEAARKSRITKVSVRVRFPDNH 120
           +   E+DDFYEFT  D+YR+LA++K++K LKTRKIREAEEAAR+S++TK  +RVRFPDNH
Sbjct: 61  SADDESDDFYEFTPADFYRLLATKKEDKSLKTRKIREAEEAARRSKLTKAVIRVRFPDNH 120

Query: 121 TLEATFHPSETMQALVDLLTKVVAQPELPFYIYTAPPKKQIKDLTQDFYSAGFVPGAIVY 180
           TLEATFHPSE +Q L+DL+ +VVA P++PFY+YT PPKKQIKD +QDFYSAGFVPGAIVY
Sbjct: 121 TLEATFHPSEKIQGLIDLVKRVVAHPDVPFYLYTTPPKKQIKDFSQDFYSAGFVPGAIVY 180

Query: 181 FSYDQPEGEAVGSVAYLNEEAMSLKGIEIASEEDEPVLAVAEPETAPPPPVSDPVVKETK 240
           FS DQP+ +   S  YLNEE +SLK +E  ++  EPV + +EP T     V  PV  E K
Sbjct: 181 FSNDQPKDDGGSSTPYLNEEILSLKDLEAMTKAVEPVESSSEPATVDSSAV--PVEHERK 240

Query: 241 PTNKKAVKPKWLKM 255
            T KK  KPKW KM
Sbjct: 241 STEKKTTKPKWFKM 251

[Close]
BLAST of Cp4.1LG01g25420 vs. Swiss-Prot
Match: ASPC1_MOUSE (Tether containing UBX domain for GLUT4 OS=Mus musculus GN=Aspscr1 PE=1 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 1.2e-15
Identity = 63/208 (30.29%), Postives = 101/208 (48.56%), Query Frame = 1 

Query: 67  DDFYEFTAEDYYRVLASRKDEKY------LKTRKIREAEEAARKSRITKVSVRVRFPDNH 126
           D+F+E T +D  R LA  K E+       L T+  REA+   +  R  KV++RV FPD +
Sbjct: 338 DEFFEVTVDDVRRRLAQLKSERKRLEEAPLVTKAFREAQMKEKLERYPKVALRVLFPDRY 397

Query: 127 TLEATFHPSETMQALVDLLTKVVAQPELPFYIYTAPPKKQIKDLTQDFYSAGFVPGAIVY 186
            L+  F PSET+  L D +   +  PEL FY++ APPK  + D T   + A   P A+V+
Sbjct: 398 ILQGFFRPSETVGDLRDFVRSHLGNPELSFYLFIAPPKMVLDDHTLTLFQANLFPAALVH 457

Query: 187 FSYDQPEGEAVGSVAYLNEEAMSLKGIEIA-----SEEDEPVLAVAEPETAPPPPVS--- 246
           F  ++P G  +      +  + S   + +A     +    P+L   +P +    P++   
Sbjct: 458 FGAEEPTGLYLEPGLLEHTVSPSTADVLVARCMSRASGSPPLLPAPDPVSLESEPIAEDG 517

Query: 247 -----DPVVKETKPTNKKAVK-PKWLKM 255
                +P+    +P  +   K PKWLK+
Sbjct: 518 ALGPPEPIQGTAQPVKRSLGKVPKWLKL 545

[Close]
BLAST of Cp4.1LG01g25420 vs. Swiss-Prot
Match: ASPC1_HUMAN (Tether containing UBX domain for GLUT4 OS=Homo sapiens GN=ASPSCR1 PE=1 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 3.5e-15
Identity = 68/209 (32.54%), Postives = 99/209 (47.37%), Query Frame = 1 

Query: 67  DDFYEFTAEDYYRVLASRKDEKY------LKTRKIREAEEAARKSRITKVSVRVRFPDNH 126
           D+F+E T +D  R LA  K E+       L T+  REA+   +  R  KV++RV FPD +
Sbjct: 342 DEFFELTVDDVRRRLAQLKSERKRLEEAPLVTKAFREAQIKEKLERYPKVALRVLFPDRY 401

Query: 127 TLEATFHPSETMQALVDLLTKVVAQPELPFYIYTAPPKKQIKDLTQDFYSAGFVPGAIVY 186
            L+  F PSET+  L D +   +  PEL FY++  PPK  + D TQ  + A   P A+V+
Sbjct: 402 VLQGFFRPSETVGDLRDFVRSHLGNPELSFYLFITPPKTVLDDHTQTLFQANLFPAALVH 461

Query: 187 FSYDQPEGEAVGSVAYLNEEAMSLKGIEI-ASEEDEPVLAVAEPETAP-PPPVSDPVVKE 246
              ++P G  V     L E A+S    ++  +           P  AP P P S+P  +E
Sbjct: 462 LGAEEPAG--VYLEPGLLEHAISPSAADVLVARYMSRAAGSPSPLPAPDPAPKSEPAAEE 521

Query: 247 ------------TKPTNKKAVK-PKWLKM 255
                        +P  +   K PKWLK+
Sbjct: 522 GALVPPEPIPGTAQPVKRSLGKVPKWLKL 548

[Close]
BLAST of Cp4.1LG01g25420 vs. Swiss-Prot
Match: UBXN6_MOUSE (UBX domain-containing protein 6 OS=Mus musculus GN=Ubxn6 PE=1 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 3.5e-07
Identity = 51/164 (31.10%), Postives = 78/164 (47.56%), Query Frame = 1 

Query: 30  KAKLLGA---KEKFGREIRVFETLPPSS--SSDELPNTGGETDDFYEFTAEDYYRVLASR 89
           K +LL A   +    R++RVF    PS+  S  ELP+      DF+  TAE+  R    R
Sbjct: 257 KQQLLDAEPVRATLDRQLRVFR---PSALASHFELPS------DFFSLTAEEVKREQRLR 316

Query: 90  KDE----KYLKTRKIREAEEAARKSRITKVSVRVRFPDNHTLEATFHPSETMQALVDLLT 149
            +       L+T+ +RE EE     + T   VRVR PD   L+ TF+  E + AL   + 
Sbjct: 317 TEAVERLSSLRTKAMREKEEQRELRKYTYALVRVRLPDGCLLQGTFYAREKLSALFRFVR 376

Query: 150 KVVAQPELPFYIYTAPPKKQIKDLTQDFYSAGFVPGAIVYFSYD 185
           + +    LPF +  +  +K  ++        G VP A++ FS+D
Sbjct: 377 EALQNDWLPFELRASGGQKLEENEALALNECGLVPSALLTFSWD 411

[Close]
BLAST of Cp4.1LG01g25420 vs. TrEMBL
Match: A0A0A0KBF4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G008580 PE=4 SV=1)

HSP 1 Score: 404.1 bits (1037), Expect = 1.3e-109
Identity = 208/254 (81.89%), Postives = 228/254 (89.76%), Query Frame = 1 

Query: 1   MVWDDSYSLALKRRRFTYNHINSMADESAKAKLLGAKEKFGREIRVFETLPPSSSSDELP 60
           MV DDSYSLALKRRRF+Y   NSMAD+S+KAKLL  KEK+GREIRVFET+PPSSS++ELP
Sbjct: 1   MVCDDSYSLALKRRRFSYTS-NSMADQSSKAKLLSVKEKYGREIRVFETMPPSSSTEELP 60

Query: 61  NTGGETDDFYEFTAEDYYRVLASRKDEKYLKTRKIREAEEAARKSRITKVSVRVRFPDNH 120
           N G E D FYEFTAEDYYRVLA++KD+KYLKTRK+REAEEAAR+S+ITKVSVRVRFPDNH
Sbjct: 61  NAGEEPDGFYEFTAEDYYRVLATKKDDKYLKTRKLREAEEAARRSKITKVSVRVRFPDNH 120

Query: 121 TLEATFHPSETMQALVDLLTKVVAQPELPFYIYTAPPKKQIKDLTQDFYSAGFVPGAIVY 180
           TLEATFHPSE MQ LVDLLTKVVAQPELPFYIYT PPKKQIKDL QDFYSAGFVPGAIVY
Sbjct: 121 TLEATFHPSERMQTLVDLLTKVVAQPELPFYIYTTPPKKQIKDLMQDFYSAGFVPGAIVY 180

Query: 181 FSYDQPEGEAVGSVAYLNEEAMSLKGIEIASEEDEPVLAVAEPETAPPPPVSDPVVKETK 240
           FSYD PEGE+VGSV+YLNE+AM LK +EI SEE+E   AVAEPETA  PP   PVVKETK
Sbjct: 181 FSYDLPEGESVGSVSYLNEDAMLLKDLEIVSEEEESTSAVAEPETAASPPAPTPVVKETK 240

Query: 241 PTNKKAVKPKWLKM 255
           PT+KKA+KPKWLKM
Sbjct: 241 PTDKKAIKPKWLKM 253

[Close]
BLAST of Cp4.1LG01g25420 vs. TrEMBL
Match: A0A0D2T547_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_011G093000 PE=4 SV=1)

HSP 1 Score: 317.0 bits (811), Expect = 2.1e-83
Identity = 166/257 (64.59%), Postives = 200/257 (77.82%), Query Frame = 1 

Query: 1   MVWDDSYSLALKRRRFTYNHINSMADESAKAKLLGAKEKFGREIRVFETLPPSSSSDELP 60
           M+ D S  L LKRRRFT   I+SM  ESAKAKL  AKEKFGREIRVFET     + D +P
Sbjct: 1   MIVDGSSPLPLKRRRFT--SIDSMEAESAKAKLAAAKEKFGREIRVFETASLLPTQDGVP 60

Query: 61  NTGGETDDFYEFTAEDYYRVLASRKDEKYLKTRKIREAEEAARKSRITKVSVRVRFPDNH 120
           NT  E DDFY+FTAEDYYR++AS+K++K+LKTRKIREAEEAAR+SRITK  VR+RFPDNH
Sbjct: 61  NTAEEPDDFYDFTAEDYYRLMASKKEDKHLKTRKIREAEEAARRSRITKAVVRIRFPDNH 120

Query: 121 TLEATFHPSETMQALVDLLTKVVAQPELPFYIYTAPPKKQIKDLTQDFYSAGFVPGAIVY 180
           TLE TFHPSET+Q+LVDL++K++A+P+LPFY+YT PPKKQIKD+TQDFYSAGF+PGAI+Y
Sbjct: 121 TLELTFHPSETLQSLVDLISKLIARPDLPFYLYTTPPKKQIKDMTQDFYSAGFIPGAILY 180

Query: 181 FSYDQPEGE---AVGSVAYLNEEAMSLKGIEIASEEDEPVLAVAEPETAPPPPVSDPVVK 240
           FSYD P+GE   A  S  +L EE MSLKG+E+ +  ++P    + PE A    V  P V 
Sbjct: 181 FSYDLPKGEDAAAANSGPFLQEEIMSLKGLEVIAGAEQPESLQSAPEPASASAVPSPAVH 240

Query: 241 ETKPTNKKAVKPKWLKM 255
           E+KPT KK  KPKW KM
Sbjct: 241 ESKPTEKKPAKPKWFKM 255

[Close]
BLAST of Cp4.1LG01g25420 vs. TrEMBL
Match: A0A0D2UQA7_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_011G093000 PE=4 SV=1)

HSP 1 Score: 312.4 bits (799), Expect = 5.1e-82
Identity = 166/257 (64.59%), Postives = 200/257 (77.82%), Query Frame = 1 

Query: 1   MVWDDSYSLALKRRRFTYNHINSMADESAKAKLLGAKEKFGREIRVFETLPPSSSSDELP 60
           M+ D S  L LKRRRFT   I+SM  ESAKAKL  AKEKFGREIRVFET     + D +P
Sbjct: 1   MIVDGSSPLPLKRRRFT--SIDSMEAESAKAKLAAAKEKFGREIRVFETASLLPTQDGVP 60

Query: 61  NTGGETDDFYEFTAEDYYRVLASRKDEKYLKTRKIREAEEAARKSRITKVSVRVRFPDNH 120
           NT  E DDFY+FTAEDYYR++AS+K++K+LKTRKIREAEEAAR+SRITK  VR+RFPDNH
Sbjct: 61  NTE-EPDDFYDFTAEDYYRLMASKKEDKHLKTRKIREAEEAARRSRITKAVVRIRFPDNH 120

Query: 121 TLEATFHPSETMQALVDLLTKVVAQPELPFYIYTAPPKKQIKDLTQDFYSAGFVPGAIVY 180
           TLE TFHPSET+Q+LVDL++K++A+P+LPFY+YT PPKKQIKD+TQDFYSAGF+PGAI+Y
Sbjct: 121 TLELTFHPSETLQSLVDLISKLIARPDLPFYLYTTPPKKQIKDMTQDFYSAGFIPGAILY 180

Query: 181 FSYDQPEGE---AVGSVAYLNEEAMSLKGIEIASEEDEPVLAVAEPETAPPPPVSDPVVK 240
           FSYD P+GE   A  S  +L EE MSLKG+E+ +  ++P    + PE A    V  P V 
Sbjct: 181 FSYDLPKGEDAAAANSGPFLQEEIMSLKGLEVIAGAEQPESLQSAPEPASASAVPSPAVH 240

Query: 241 ETKPTNKKAVKPKWLKM 255
           E+KPT KK  KPKW KM
Sbjct: 241 ESKPTEKKPAKPKWFKM 254

[Close]
BLAST of Cp4.1LG01g25420 vs. TrEMBL
Match: A0A061EDK2_THECC (Plant UBX domain-containing protein 1 isoform 2 OS=Theobroma cacao GN=TCM_017075 PE=4 SV=1)

HSP 1 Score: 303.5 bits (776), Expect = 2.4e-79
Identity = 166/257 (64.59%), Postives = 200/257 (77.82%), Query Frame = 1 

Query: 1   MVWDDSYSLALKRRRFTYNHINSMADESAKAKLLGAKEKFGREIRVFETLPPSSSSDELP 60
           M+ D S++L  KRRRFT  +I+ M   SAKAKL  AKEKFGREIRVFETLP SS   E+ 
Sbjct: 1   MIVDGSWTL--KRRRFT--NIDPMEAASAKAKLAAAKEKFGREIRVFETLPTSS---EVS 60

Query: 61  NTGGETDDFYEFTAEDYYRVLASRKDEKYLKTRKIREAEEAARKSRITKVSVRVRFPDNH 120
           NT  E DDFYEFT EDYYRV+AS+K++K+LKTRKIREAEEAAR+SRITKV +RVRFPDNH
Sbjct: 61  NTE-EPDDFYEFTPEDYYRVMASKKEDKFLKTRKIREAEEAARRSRITKVVIRVRFPDNH 120

Query: 121 TLEATFHPSETMQALVDLLTKVVAQPELPFYIYTAPPKKQIKDLTQDFYSAGFVPGAIVY 180
           TLE TFHPSET+ +LVD + KV+A+P+LPFYIYT PPKKQ++D+TQDF+SAGFVPGAIVY
Sbjct: 121 TLEVTFHPSETVLSLVDFIKKVIARPDLPFYIYTTPPKKQMRDMTQDFFSAGFVPGAIVY 180

Query: 181 FSYDQPEGE---AVGSVAYLNEEAMSLKGIEIASEEDEPVLAVAEPETAPPPPVSDPVVK 240
           FSYD P+ +   A  S  +L +E MSLKG+E+ +E+ EPV +  EP      P   PV +
Sbjct: 181 FSYDLPKDDDAAATNSAPFLQDEIMSLKGLEVIAEQPEPVQSAPEPAATSAAPA--PVAQ 240

Query: 241 ETKPTNKKAVKPKWLKM 255
           E+KPT KK  KPKW KM
Sbjct: 241 ESKPTEKKPAKPKWFKM 247

[Close]
BLAST of Cp4.1LG01g25420 vs. TrEMBL
Match: W9S8K7_9ROSA (Tether containing UBX domain for GLUT4 OS=Morus notabilis GN=L484_017661 PE=4 SV=1)

HSP 1 Score: 302.4 bits (773), Expect = 5.3e-79
Identity = 162/259 (62.55%), Postives = 204/259 (78.76%), Query Frame = 1 

Query: 1   MVWDDSYSLALKRRRFTYNHINSMADESAKAKLLGAKEKFGREIRVFETLPPSSSSDELP 60
           M+ D S  L LKRRR T  +++ M  ++AKAKL  AKEKFGREIRVFET P SSSS E  
Sbjct: 1   MIVDRSSPLTLKRRRLT--NVDPMEAQAAKAKLASAKEKFGREIRVFETSPFSSSSTEES 60

Query: 61  NTGGETDDFYEFTAEDYYRVLASRKDEKYLKTRKIREAEEAARKSRITKVSVRVRFPDNH 120
            T  E D+FYEF+AEDYYR++A++K++KYLKTRKIREAEEAAR+SRITK  +R+RFPDNH
Sbjct: 61  KTE-EPDEFYEFSAEDYYRIMATKKEDKYLKTRKIREAEEAARRSRITKAVIRLRFPDNH 120

Query: 121 TLEATFHPSETMQALVDLLTKVVAQPELPFYIYTAPPKKQIKDLTQDFYSAGFVPGAIVY 180
           TLEATFHPSE +Q+LVDLL KV+A+P+ PFY+YT PPKK IKD++QDFYSAGFVPGAIVY
Sbjct: 121 TLEATFHPSEKIQSLVDLLVKVIAKPDWPFYLYTTPPKKHIKDMSQDFYSAGFVPGAIVY 180

Query: 181 FSYDQPEGE---AVGSVAYLNEEAMSLKGIEIASEEDEPVLAVAEPETAPPP--PVSDPV 240
           F+YD P+G+   A  +  +L +E +SLKG+E+ +E++EP    A+PE AP P  P   PV
Sbjct: 181 FAYDIPKGDDDAAAWTGPFLRDEIISLKGLELITEQEEP----AQPEPAPEPVHPAPTPV 240

Query: 241 VKETKPTNKKAVKPKWLKM 255
           V+E +P  KK +KPKWLK+
Sbjct: 241 VEERRPAEKKPIKPKWLKL 252

[Close]
BLAST of Cp4.1LG01g25420 vs. TAIR10
Match: AT3G27310.1 (AT3G27310.1 plant UBX domain-containing protein 1)

HSP 1 Score: 268.9 bits (686), Expect = 3.3e-72
Identity = 145/254 (57.09%), Postives = 180/254 (70.87%), Query Frame = 1 

Query: 1   MVWDDSYSLALKRRRFTYNHINSMADESAKAKLLGAKEKFGREIRVFETLPPSSSSDELP 60
           M  DD     LKRRR      +  A  SA+AK+   +EK GRE+RVFET   S    ++ 
Sbjct: 1   MFVDDPSLHTLKRRRLEITD-SMEASSSAQAKIADMREKLGREVRVFETSSISQRPSQVS 60

Query: 61  NTGGETDDFYEFTAEDYYRVLASRKDEKYLKTRKIREAEEAARKSRITKVSVRVRFPDNH 120
           +   E+DDFYEFT  D+YR+LA++K++K LKTRKIREAEEAAR+S++TK  +RVRFPDNH
Sbjct: 61  SADDESDDFYEFTPADFYRLLATKKEDKSLKTRKIREAEEAARRSKLTKAVIRVRFPDNH 120

Query: 121 TLEATFHPSETMQALVDLLTKVVAQPELPFYIYTAPPKKQIKDLTQDFYSAGFVPGAIVY 180
           TLEATFHPSE +Q L+DL+ +VVA P++PFY+YT PPKKQIKD +QDFYSAGFVPGAIVY
Sbjct: 121 TLEATFHPSEKIQGLIDLVKRVVAHPDVPFYLYTTPPKKQIKDFSQDFYSAGFVPGAIVY 180

Query: 181 FSYDQPEGEAVGSVAYLNEEAMSLKGIEIASEEDEPVLAVAEPETAPPPPVSDPVVKETK 240
           FS DQP+ +   S  YLNEE +SLK +E  ++  EPV + +EP T     V  PV  E K
Sbjct: 181 FSNDQPKDDGGSSTPYLNEEILSLKDLEAMTKAVEPVESSSEPATVDSSAV--PVEHERK 240

Query: 241 PTNKKAVKPKWLKM 255
            T KK  KPKW KM
Sbjct: 241 STEKKTTKPKWFKM 251

[Close]
BLAST of Cp4.1LG01g25420 vs. NCBI nr
Match: gi|659081518|ref|XP_008441372.1| (PREDICTED: tether containing UBX domain for GLUT4 [Cucumis melo])

HSP 1 Score: 413.7 bits (1062), Expect = 2.3e-112
Identity = 212/254 (83.46%), Postives = 233/254 (91.73%), Query Frame = 1 

Query: 1   MVWDDSYSLALKRRRFTYNHINSMADESAKAKLLGAKEKFGREIRVFETLPPSSSSDELP 60
           MV DDSYSLALKRRRF++  INSMAD+S+KAKLL  KEK+GREIRVFET+PPSSS++ELP
Sbjct: 1   MVCDDSYSLALKRRRFSHT-INSMADQSSKAKLLSVKEKYGREIRVFETMPPSSSTEELP 60

Query: 61  NTGGETDDFYEFTAEDYYRVLASRKDEKYLKTRKIREAEEAARKSRITKVSVRVRFPDNH 120
           N G E D FYEFTAEDYYRVLA++KD+KYLKTRK+REAEEAAR+S+ITKVSVRVRFPDNH
Sbjct: 61  NAGEEPDGFYEFTAEDYYRVLATKKDDKYLKTRKLREAEEAARRSKITKVSVRVRFPDNH 120

Query: 121 TLEATFHPSETMQALVDLLTKVVAQPELPFYIYTAPPKKQIKDLTQDFYSAGFVPGAIVY 180
           TLEATFHPSETMQ LVDLLTKVVAQPELPFYIYT PPKKQIKDLTQDFYSAGFVPGAIVY
Sbjct: 121 TLEATFHPSETMQTLVDLLTKVVAQPELPFYIYTTPPKKQIKDLTQDFYSAGFVPGAIVY 180

Query: 181 FSYDQPEGEAVGSVAYLNEEAMSLKGIEIASEEDEPVLAVAEPETAPPPPVSDPVVKETK 240
           FSYD PEGE+VGSV+YLNE+ MSLKG+EI SEE+E  LAVAEPETAP  P   PVVKETK
Sbjct: 181 FSYDLPEGESVGSVSYLNEDVMSLKGLEIVSEEEESTLAVAEPETAPSLPAPTPVVKETK 240

Query: 241 PTNKKAVKPKWLKM 255
           PT+KKA+KPKWLKM
Sbjct: 241 PTDKKAIKPKWLKM 253

[Close]
BLAST of Cp4.1LG01g25420 vs. NCBI nr
Match: gi|449441424|ref|XP_004138482.1| (PREDICTED: tether containing UBX domain for GLUT4 [Cucumis sativus])

HSP 1 Score: 404.1 bits (1037), Expect = 1.9e-109
Identity = 208/254 (81.89%), Postives = 228/254 (89.76%), Query Frame = 1 

Query: 1   MVWDDSYSLALKRRRFTYNHINSMADESAKAKLLGAKEKFGREIRVFETLPPSSSSDELP 60
           MV DDSYSLALKRRRF+Y   NSMAD+S+KAKLL  KEK+GREIRVFET+PPSSS++ELP
Sbjct: 1   MVCDDSYSLALKRRRFSYTS-NSMADQSSKAKLLSVKEKYGREIRVFETMPPSSSTEELP 60

Query: 61  NTGGETDDFYEFTAEDYYRVLASRKDEKYLKTRKIREAEEAARKSRITKVSVRVRFPDNH 120
           N G E D FYEFTAEDYYRVLA++KD+KYLKTRK+REAEEAAR+S+ITKVSVRVRFPDNH
Sbjct: 61  NAGEEPDGFYEFTAEDYYRVLATKKDDKYLKTRKLREAEEAARRSKITKVSVRVRFPDNH 120

Query: 121 TLEATFHPSETMQALVDLLTKVVAQPELPFYIYTAPPKKQIKDLTQDFYSAGFVPGAIVY 180
           TLEATFHPSE MQ LVDLLTKVVAQPELPFYIYT PPKKQIKDL QDFYSAGFVPGAIVY
Sbjct: 121 TLEATFHPSERMQTLVDLLTKVVAQPELPFYIYTTPPKKQIKDLMQDFYSAGFVPGAIVY 180

Query: 181 FSYDQPEGEAVGSVAYLNEEAMSLKGIEIASEEDEPVLAVAEPETAPPPPVSDPVVKETK 240
           FSYD PEGE+VGSV+YLNE+AM LK +EI SEE+E   AVAEPETA  PP   PVVKETK
Sbjct: 181 FSYDLPEGESVGSVSYLNEDAMLLKDLEIVSEEEESTSAVAEPETAASPPAPTPVVKETK 240

Query: 241 PTNKKAVKPKWLKM 255
           PT+KKA+KPKWLKM
Sbjct: 241 PTDKKAIKPKWLKM 253

[Close]
BLAST of Cp4.1LG01g25420 vs. NCBI nr
Match: gi|763803890|gb|KJB70828.1| (hypothetical protein B456_011G093000 [Gossypium raimondii])

HSP 1 Score: 317.0 bits (811), Expect = 3.0e-83
Identity = 166/257 (64.59%), Postives = 200/257 (77.82%), Query Frame = 1 

Query: 1   MVWDDSYSLALKRRRFTYNHINSMADESAKAKLLGAKEKFGREIRVFETLPPSSSSDELP 60
           M+ D S  L LKRRRFT   I+SM  ESAKAKL  AKEKFGREIRVFET     + D +P
Sbjct: 1   MIVDGSSPLPLKRRRFT--SIDSMEAESAKAKLAAAKEKFGREIRVFETASLLPTQDGVP 60

Query: 61  NTGGETDDFYEFTAEDYYRVLASRKDEKYLKTRKIREAEEAARKSRITKVSVRVRFPDNH 120
           NT  E DDFY+FTAEDYYR++AS+K++K+LKTRKIREAEEAAR+SRITK  VR+RFPDNH
Sbjct: 61  NTAEEPDDFYDFTAEDYYRLMASKKEDKHLKTRKIREAEEAARRSRITKAVVRIRFPDNH 120

Query: 121 TLEATFHPSETMQALVDLLTKVVAQPELPFYIYTAPPKKQIKDLTQDFYSAGFVPGAIVY 180
           TLE TFHPSET+Q+LVDL++K++A+P+LPFY+YT PPKKQIKD+TQDFYSAGF+PGAI+Y
Sbjct: 121 TLELTFHPSETLQSLVDLISKLIARPDLPFYLYTTPPKKQIKDMTQDFYSAGFIPGAILY 180

Query: 181 FSYDQPEGE---AVGSVAYLNEEAMSLKGIEIASEEDEPVLAVAEPETAPPPPVSDPVVK 240
           FSYD P+GE   A  S  +L EE MSLKG+E+ +  ++P    + PE A    V  P V 
Sbjct: 181 FSYDLPKGEDAAAANSGPFLQEEIMSLKGLEVIAGAEQPESLQSAPEPASASAVPSPAVH 240

Query: 241 ETKPTNKKAVKPKWLKM 255
           E+KPT KK  KPKW KM
Sbjct: 241 ESKPTEKKPAKPKWFKM 255

[Close]
BLAST of Cp4.1LG01g25420 vs. NCBI nr
Match: gi|823242219|ref|XP_012453804.1| (PREDICTED: plant UBX domain-containing protein 1-like isoform X1 [Gossypium raimondii])

HSP 1 Score: 312.4 bits (799), Expect = 7.4e-82
Identity = 166/257 (64.59%), Postives = 200/257 (77.82%), Query Frame = 1 

Query: 1   MVWDDSYSLALKRRRFTYNHINSMADESAKAKLLGAKEKFGREIRVFETLPPSSSSDELP 60
           M+ D S  L LKRRRFT   I+SM  ESAKAKL  AKEKFGREIRVFET     + D +P
Sbjct: 1   MIVDGSSPLPLKRRRFT--SIDSMEAESAKAKLAAAKEKFGREIRVFETASLLPTQDGVP 60

Query: 61  NTGGETDDFYEFTAEDYYRVLASRKDEKYLKTRKIREAEEAARKSRITKVSVRVRFPDNH 120
           NT  E DDFY+FTAEDYYR++AS+K++K+LKTRKIREAEEAAR+SRITK  VR+RFPDNH
Sbjct: 61  NTE-EPDDFYDFTAEDYYRLMASKKEDKHLKTRKIREAEEAARRSRITKAVVRIRFPDNH 120

Query: 121 TLEATFHPSETMQALVDLLTKVVAQPELPFYIYTAPPKKQIKDLTQDFYSAGFVPGAIVY 180
           TLE TFHPSET+Q+LVDL++K++A+P+LPFY+YT PPKKQIKD+TQDFYSAGF+PGAI+Y
Sbjct: 121 TLELTFHPSETLQSLVDLISKLIARPDLPFYLYTTPPKKQIKDMTQDFYSAGFIPGAILY 180

Query: 181 FSYDQPEGE---AVGSVAYLNEEAMSLKGIEIASEEDEPVLAVAEPETAPPPPVSDPVVK 240
           FSYD P+GE   A  S  +L EE MSLKG+E+ +  ++P    + PE A    V  P V 
Sbjct: 181 FSYDLPKGEDAAAANSGPFLQEEIMSLKGLEVIAGAEQPESLQSAPEPASASAVPSPAVH 240

Query: 241 ETKPTNKKAVKPKWLKM 255
           E+KPT KK  KPKW KM
Sbjct: 241 ESKPTEKKPAKPKWFKM 254

[Close]
BLAST of Cp4.1LG01g25420 vs. NCBI nr
Match: gi|590646854|ref|XP_007031737.1| (Plant UBX domain-containing protein 1 isoform 2 [Theobroma cacao])

HSP 1 Score: 303.5 bits (776), Expect = 3.4e-79
Identity = 166/257 (64.59%), Postives = 200/257 (77.82%), Query Frame = 1 

Query: 1   MVWDDSYSLALKRRRFTYNHINSMADESAKAKLLGAKEKFGREIRVFETLPPSSSSDELP 60
           M+ D S++L  KRRRFT  +I+ M   SAKAKL  AKEKFGREIRVFETLP SS   E+ 
Sbjct: 1   MIVDGSWTL--KRRRFT--NIDPMEAASAKAKLAAAKEKFGREIRVFETLPTSS---EVS 60

Query: 61  NTGGETDDFYEFTAEDYYRVLASRKDEKYLKTRKIREAEEAARKSRITKVSVRVRFPDNH 120
           NT  E DDFYEFT EDYYRV+AS+K++K+LKTRKIREAEEAAR+SRITKV +RVRFPDNH
Sbjct: 61  NTE-EPDDFYEFTPEDYYRVMASKKEDKFLKTRKIREAEEAARRSRITKVVIRVRFPDNH 120

Query: 121 TLEATFHPSETMQALVDLLTKVVAQPELPFYIYTAPPKKQIKDLTQDFYSAGFVPGAIVY 180
           TLE TFHPSET+ +LVD + KV+A+P+LPFYIYT PPKKQ++D+TQDF+SAGFVPGAIVY
Sbjct: 121 TLEVTFHPSETVLSLVDFIKKVIARPDLPFYIYTTPPKKQMRDMTQDFFSAGFVPGAIVY 180

Query: 181 FSYDQPEGE---AVGSVAYLNEEAMSLKGIEIASEEDEPVLAVAEPETAPPPPVSDPVVK 240
           FSYD P+ +   A  S  +L +E MSLKG+E+ +E+ EPV +  EP      P   PV +
Sbjct: 181 FSYDLPKDDDAAATNSAPFLQDEIMSLKGLEVIAEQPEPVQSAPEPAATSAAPA--PVAQ 240

Query: 241 ETKPTNKKAVKPKWLKM 255
           E+KPT KK  KPKW KM
Sbjct: 241 ESKPTEKKPAKPKWFKM 247

The following BLAST results are available for this feature:
BLAST of Cp4.1LG01g25420 vs. Swiss-Prot
Match NameE-valueIdentityDescription
PUX1_ARATH5.8e-7157.09Plant UBX domain-containing protein 1 OS=Arabidopsis thaliana GN=PUX1 PE=1 SV=1[more]
ASPC1_MOUSE1.2e-1530.29Tether containing UBX domain for GLUT4 OS=Mus musculus GN=Aspscr1 PE=1 SV=1[more]
ASPC1_HUMAN3.5e-1532.54Tether containing UBX domain for GLUT4 OS=Homo sapiens GN=ASPSCR1 PE=1 SV=1[more]
UBXN6_MOUSE3.5e-0731.10UBX domain-containing protein 6 OS=Mus musculus GN=Ubxn6 PE=1 SV=1[more]
BLAST of Cp4.1LG01g25420 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KBF4_CUCSA1.3e-10981.89Uncharacterized protein OS=Cucumis sativus GN=Csa_6G008580 PE=4 SV=1[more]
A0A0D2T547_GOSRA2.1e-8364.59Uncharacterized protein OS=Gossypium raimondii GN=B456_011G093000 PE=4 SV=1[more]
A0A0D2UQA7_GOSRA5.1e-8264.59Uncharacterized protein OS=Gossypium raimondii GN=B456_011G093000 PE=4 SV=1[more]
A0A061EDK2_THECC2.4e-7964.59Plant UBX domain-containing protein 1 isoform 2 OS=Theobroma cacao GN=TCM_017075... [more]
W9S8K7_9ROSA5.3e-7962.55Tether containing UBX domain for GLUT4 OS=Morus notabilis GN=L484_017661 PE=4 SV... [more]
BLAST of Cp4.1LG01g25420 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G27310.13.3e-7257.09 plant UBX domain-containing protein 1[more]
BLAST of Cp4.1LG01g25420 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659081518|ref|XP_008441372.1|2.3e-11283.46PREDICTED: tether containing UBX domain for GLUT4 [Cucumis melo][more]
gi|449441424|ref|XP_004138482.1|1.9e-10981.89PREDICTED: tether containing UBX domain for GLUT4 [Cucumis sativus][more]
gi|763803890|gb|KJB70828.1|3.0e-8364.59hypothetical protein B456_011G093000 [Gossypium raimondii][more]
gi|823242219|ref|XP_012453804.1|7.4e-8264.59PREDICTED: plant UBX domain-containing protein 1-like isoform X1 [Gossypium raim... [more]
gi|590646854|ref|XP_007031737.1|3.4e-7964.59Plant UBX domain-containing protein 1 isoform 2 [Theobroma cacao][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR001012UBX_dom
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0044699 single-organism process
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0005515 protein binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG01g25420.1Cp4.1LG01g25420.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001012UBX domainPFAMPF00789UBXcoord: 108..170
score: 1.
IPR001012UBX domainPROFILEPS50033UBXcoord: 105..181
score: 13
NoneNo IPR availableGENE3DG3DSA:3.10.20.90coord: 108..181
score: 6.3
NoneNo IPR availablePANTHERPTHR23153UBX-RELATEDcoord: 36..229
score: 2.1

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG01g25420CmaCh04G029510Cucurbita maxima (Rimu)cmacpeB721
Cp4.1LG01g25420Carg06025Silver-seed gourdcarcpeB0034
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG01g25420Cucurbita pepo (Zucchini)cpecpeB199
Cp4.1LG01g25420Cucumber (Gy14) v1cgycpeB0364
Cp4.1LG01g25420Cucurbita maxima (Rimu)cmacpeB317
Cp4.1LG01g25420Cucurbita moschata (Rifu)cmocpeB279
Cp4.1LG01g25420Cucurbita moschata (Rifu)cmocpeB673
Cp4.1LG01g25420Wild cucumber (PI 183967)cpecpiB461
Cp4.1LG01g25420Cucumber (Chinese Long) v2cpecuB460
Cp4.1LG01g25420Bottle gourd (USVL1VR-Ls)cpelsiB339
Cp4.1LG01g25420Watermelon (Charleston Gray)cpewcgB355
Cp4.1LG01g25420Watermelon (97103) v1cpewmB461
Cp4.1LG01g25420Melon (DHL92) v3.5.1cpemeB400
Cp4.1LG01g25420Cucumber (Gy14) v2cgybcpeB798
Cp4.1LG01g25420Melon (DHL92) v3.6.1cpemedB465
Cp4.1LG01g25420Cucumber (Chinese Long) v3cpecucB0569
Cp4.1LG01g25420Wax gourdcpewgoB0525