Cp4.1LG01g25090 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG01g25090
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
Description40S ribosomal protein S25, putative
LocationCp4.1LG01 : 18594144 .. 18596124 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAATAATGTTCAAAGCTTCACCTTTTTTAGCTAAAGCTGCAGCATCTAAATTCGCAGTAGAGTGAACACAATTCTAGTGATTGACATATCAACCTCAAAACACTAAGCACAAAAGAGTCTGAGAGTGATTGAAGTTTCAATCAGATTGAACTGATAAAATGCATGCAAACAAAGAAATCAGAACAAATCACCTTCCTTGTGTGTGTGAATGACACAGTCGGATTGTGGATATGCCACGCAGGTTAGGACATACCCCTTCTCCATCTGCTGGTCGTCCAAGAACGATCCGTCCGTCTGGTCAACAGTCCCGGAAACTACTTGACCTGCACAAGTAGAGCAAGCCCCAGCCCTGCAAGAATAAGGTAGATCCAATCCAGCACTCTCAGCCGAGTCGAGAATGTAAGTGTCATCAGGGGCTTCTGGTGGAGGAAAGCAGAAGAAGAAGGTATGCTTCTTAGAGTTAATGCTCTCATTTTCCTAAGAAGTAAAATACAAATTCACGTAATTTAGTAGTGTTGGAATATTGTACGTCTAGCGGTTTATTAATAATTTTTTCTTAGATTTTCGGATTATGGCGATGATTGCTTAGTGCTTGTCTTGAAATCACTCAAGAGTATCATTAAACGAAACTTAATCCTTTTTTAGATTCCTCTGTTTTACTGCCTTGCTTAGATTATCGGCTCATTAGAAAATAGCTTATATGTTAGATTATTTAGAAGGGATGATATTAGTCATTAAGTAATATTAAGACTCAATGCCTTGAAAAAAATAAATTGTGATTTAAAATTGATGGTGTTCATGCATGAAATATTTGTCTGGGAACTGTTAATCACTCATCACTTAATTTGCAGAAATGGAGCAAGGGCAAGCAAAAGGAGAAGGTAAACAACATGGTTTTGTTTGATCAGGGAACCTATGATAAGCTTCTTTCTGAAGTCCCCAAGTACAAGCTAATCACTCCTTCAATCCTTTCTGATAGGATGAGGGTACGTCTTTTCTTCCTTTCATCCATCCATGGCTATGTACACTTATACTTCAATTTGTTTGTTGTTAAACTGTAATATTTCCTATCAACTCGAGCTGATAACCAGCCCATAGATTTCTTTTACTTGGTACCCTACCAATGGACATGAAATTTACAGTCAAGGAATCAGATTTAAAATTTTATGTAGACCCTTTTGGTTCAACATCTAGAAATCAATTTATTGTACAACTTTTTGTTTGCAATTCAAATAATGGCTCCTTTGTGTCATCTGCCATATTCAGATCAATGGTTCACTTGCCCGAAGAGCAATCAAGGATTTGATGGCTCGAGGTTCCATCAGAATGATCTCGGCTCATTCTAGTCAGGAGATATACACCAGAGCAACCAACACCTAAACATAATTGAATTCACTTGTGCCCTGAAGGGTATATAGATGTGTAGCTGCCTTTGCATTTTTGCAGTTCCAAATTTTGTTCAGCGAAGAGATTAGATTTTGGTTTGTTAAAATGGCTAGATGATCTCGAAATGTGACGTTTTAATTCATTTTAGCGTTATTCTACCTTTGAATCCAGGATCCTCATTGAGTCACTTGGTTCTTATAATCGTTATTAGGTCAGCTGTTTTACCTTATTTCTGATCATAATGGTGTTGGAAACAAAAACAAGTATGGGAAGAGAAGTGTTTTTGTAGATATGGTCATTTTAATATTTAATTGCATTTGTTTTTTCAAATTTAAACACTAATACTAGTTAGCCTAATTAATGATTCTAAAGGTTGTTTTTTCAAATTTAAACACTAATACTAGTTAGCCTAATTAATGATTCTAAAGGTTGTTTTTTCAAAAAAAAATTAAATTTACAAAAATAGAGGTTGATTCAATATTAATAATCATTTAATATCATAAAATTTTGATCTAATGATATATTCATAAAATATATTATAAATCATAATTTAATTATCTAAAATCACAAATAAAAATGAATTTAATTTATAA

mRNA sequence

ATGAATAATATTGAACTGATAAAATGCATGCAAACAAAGAAATCAGAACAAATCACCTTCCTTGTGTGTGTGAATGACACAGTCGGATTGTGGATATGCCACGCAGGGGCTTCTGGTGGAGGAAAGCAGAAGAAGAAGAAATGGAGCAAGGGCAAGCAAAAGGAGAAGGTAAACAACATGGTTTTGTTTGATCAGGGAACCTATGATAAGCTTCTTTCTGAAGTCCCCAAGTACAAGCTAATCACTCCTTCAATCCTTTCTGATAGGATGAGGATCAATGGTTCACTTGCCCGAAGAGCAATCAAGGATTTGATGGCTCGAGGTTCCATCAGAATGATCTCGGCTCATTCTAGTCAGGAGATATACACCAGAGCAACCAACACCTAAACATAATTGAATTCACTTGTGCCCTGAAGGGTATATAGATGTGTAGCTGCCTTTGCATTTTTGCAGTTCCAAATTTTGTTCAGCGAAGAGATTAGATTTTGGTTTGTTAAAATGGCTAGATGATCTCGAAATGTGACGTTTTAATTCATTTTAGCGTTATTCTACCTTTGAATCCAGGATCCTCATTGAGTCACTTGGTTCTTATAATCGTTATTAGGTCAGCTGTTTTACCTTATTTCTGATCATAATGGTGTTGGAAACAAAAACAAGTATGGGAAGAGAAGTGTTTTTGTAGATATGGTCATTTTAATATTTAATTGCATTTGTTTTTTCAAATTTAAACACTAATACTAGTTAGCCTAATTAATGATTCTAAAGGTTGTTTTTTCAAATTTAAACACTAATACTAGTTAGCCTAATTAATGATTCTAAAGGTTGTTTTTTCAAAAAAAAATTAAATTTACAAAAATAGAGGTTGATTCAATATTAATAATCATTTAATATCATAAAATTTTGATCTAATGATATATTCATAAAATATATTATAAATCATAATTTAATTATCTAAAATCACAAATAAAAATGAATTTAATTTATAA

Coding sequence (CDS)

ATGAATAATATTGAACTGATAAAATGCATGCAAACAAAGAAATCAGAACAAATCACCTTCCTTGTGTGTGTGAATGACACAGTCGGATTGTGGATATGCCACGCAGGGGCTTCTGGTGGAGGAAAGCAGAAGAAGAAGAAATGGAGCAAGGGCAAGCAAAAGGAGAAGGTAAACAACATGGTTTTGTTTGATCAGGGAACCTATGATAAGCTTCTTTCTGAAGTCCCCAAGTACAAGCTAATCACTCCTTCAATCCTTTCTGATAGGATGAGGATCAATGGTTCACTTGCCCGAAGAGCAATCAAGGATTTGATGGCTCGAGGTTCCATCAGAATGATCTCGGCTCATTCTAGTCAGGAGATATACACCAGAGCAACCAACACCTAA

Protein sequence

MNNIELIKCMQTKKSEQITFLVCVNDTVGLWICHAGASGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKLITPSILSDRMRINGSLARRAIKDLMARGSIRMISAHSSQEIYTRATNT
Homology
[Close]
BLAST of Cp4.1LG01g25090 vs. Swiss-Prot
Match: RS252_ARATH (40S ribosomal protein S25-2 OS=Arabidopsis thaliana GN=RPS25B PE=2 SV=1)

HSP 1 Score: 164.1 bits (414), Expect = 1.0e-39
Identity = 82/91 (90.11%), Postives = 89/91 (97.80%), Query Frame = 1 

Query: 38  SGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKLITPSILSDRMRINGSLA 97
           SGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLL+E PK+KLITPSILSDRMRINGSLA
Sbjct: 18  SGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLTEAPKFKLITPSILSDRMRINGSLA 77

Query: 98  RRAIKDLMARGSIRMISAHSSQEIYTRATNT 129
           RRAI++LMA+G IRM+SAHSSQ+IYTRATNT
Sbjct: 78  RRAIRELMAKGLIRMVSAHSSQQIYTRATNT 108

[Close]
BLAST of Cp4.1LG01g25090 vs. Swiss-Prot
Match: RS25_SOLLC (40S ribosomal protein S25 OS=Solanum lycopersicum GN=RPS25 PE=3 SV=1)

HSP 1 Score: 162.2 bits (409), Expect = 3.9e-39
Identity = 80/91 (87.91%), Postives = 89/91 (97.80%), Query Frame = 1 

Query: 38  SGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKLITPSILSDRMRINGSLA 97
           SGGGKQKKKKWSKGKQKEKVNNMVLFD+ TYDKLLSE PKYKLITPS+LSDR+RI+GSLA
Sbjct: 18  SGGGKQKKKKWSKGKQKEKVNNMVLFDKSTYDKLLSEAPKYKLITPSVLSDRLRISGSLA 77

Query: 98  RRAIKDLMARGSIRMISAHSSQEIYTRATNT 129
           R+AI+DLMARGSIRM+SAH+SQ+IYTRATNT
Sbjct: 78  RKAIRDLMARGSIRMVSAHASQQIYTRATNT 108

[Close]
BLAST of Cp4.1LG01g25090 vs. Swiss-Prot
Match: RS254_ARATH (40S ribosomal protein S25-4 OS=Arabidopsis thaliana GN=RPS25E PE=2 SV=1)

HSP 1 Score: 160.6 bits (405), Expect = 1.1e-38
Identity = 80/91 (87.91%), Postives = 88/91 (96.70%), Query Frame = 1 

Query: 38  SGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKLITPSILSDRMRINGSLA 97
           SGGGKQKKKKWSKGKQKEKVNNMVLFDQ TYDKLL+E PK+KLITPSILSDRMRINGSLA
Sbjct: 18  SGGGKQKKKKWSKGKQKEKVNNMVLFDQATYDKLLTEAPKFKLITPSILSDRMRINGSLA 77

Query: 98  RRAIKDLMARGSIRMISAHSSQEIYTRATNT 129
           RRAI++LMA+G IRM++AHSSQ+IYTRATNT
Sbjct: 78  RRAIRELMAKGVIRMVAAHSSQQIYTRATNT 108

[Close]
BLAST of Cp4.1LG01g25090 vs. Swiss-Prot
Match: RS253_ARATH (40S ribosomal protein S25-3 OS=Arabidopsis thaliana GN=RPS25D PE=3 SV=2)

HSP 1 Score: 159.1 bits (401), Expect = 3.3e-38
Identity = 79/90 (87.78%), Postives = 88/90 (97.78%), Query Frame = 1 

Query: 38  SGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKLITPSILSDRMRINGSLA 97
           SGGGKQKKKKWSKGKQKEKVNNMVLFDQ TYDKLLSE PK+KLITPSILSDR+RINGSLA
Sbjct: 18  SGGGKQKKKKWSKGKQKEKVNNMVLFDQATYDKLLSEAPKFKLITPSILSDRLRINGSLA 77

Query: 98  RRAIKDLMARGSIRMISAHSSQEIYTRATN 128
           RRAI++LMA+G+IRM+SAHSSQ+IYTRAT+
Sbjct: 78  RRAIRELMAKGTIRMVSAHSSQQIYTRATH 107

[Close]
BLAST of Cp4.1LG01g25090 vs. Swiss-Prot
Match: RS251_ARATH (40S ribosomal protein S25-1 OS=Arabidopsis thaliana GN=RPS25A PE=3 SV=3)

HSP 1 Score: 152.1 bits (383), Expect = 4.0e-36
Identity = 75/89 (84.27%), Postives = 84/89 (94.38%), Query Frame = 1 

Query: 38  SGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKLITPSILSDRMRINGSLA 97
           SGGGKQKKKKWSKGKQKEKVNNMVLFDQ TYDKL+SE PK+KLITPSILSDR+RINGSLA
Sbjct: 18  SGGGKQKKKKWSKGKQKEKVNNMVLFDQATYDKLMSEAPKFKLITPSILSDRLRINGSLA 77

Query: 98  RRAIKDLMARGSIRMISAHSSQEIYTRAT 127
           R+AI+DLM +G+IRM+S HSSQ+I TRAT
Sbjct: 78  RKAIRDLMVKGTIRMVSTHSSQQINTRAT 106

[Close]
BLAST of Cp4.1LG01g25090 vs. TrEMBL
Match: A0A0A0KB40_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G045180 PE=4 SV=1)

HSP 1 Score: 174.1 bits (440), Expect = 1.1e-40
Identity = 88/91 (96.70%), Postives = 91/91 (100.00%), Query Frame = 1 

Query: 38  SGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKLITPSILSDRMRINGSLA 97
           SGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKL+TPSILSDRMR+NGSLA
Sbjct: 18  SGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKLVTPSILSDRMRVNGSLA 77

Query: 98  RRAIKDLMARGSIRMISAHSSQEIYTRATNT 129
           RRAIKDLMARGSIRMISAHSSQ+IYTRATNT
Sbjct: 78  RRAIKDLMARGSIRMISAHSSQQIYTRATNT 108

[Close]
BLAST of Cp4.1LG01g25090 vs. TrEMBL
Match: A0A0C9S5M4_9SPER (TSA: Wollemia nobilis Ref_Wollemi_Transcript_12659_740 transcribed RNA sequence OS=Wollemia nobilis PE=4 SV=1)

HSP 1 Score: 172.2 bits (435), Expect = 4.2e-40
Identity = 88/94 (93.62%), Postives = 92/94 (97.87%), Query Frame = 1 

Query: 35  AGASGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKLITPSILSDRMRING 94
           A + GGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKLITPSILSDR+RING
Sbjct: 16  AKSGGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKLITPSILSDRLRING 75

Query: 95  SLARRAIKDLMARGSIRMISAHSSQEIYTRATNT 129
           SLAR+AIKDLMARGSIRMISAHSSQ+IYTRATNT
Sbjct: 76  SLARKAIKDLMARGSIRMISAHSSQQIYTRATNT 109

[Close]
BLAST of Cp4.1LG01g25090 vs. TrEMBL
Match: A0A0D6R5H1_ARACU (Uncharacterized protein OS=Araucaria cunninghamii PE=4 SV=1)

HSP 1 Score: 172.2 bits (435), Expect = 4.2e-40
Identity = 88/94 (93.62%), Postives = 92/94 (97.87%), Query Frame = 1 

Query: 35  AGASGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKLITPSILSDRMRING 94
           A + GGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKLITPSILSDR+RING
Sbjct: 16  AKSGGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKLITPSILSDRLRING 75

Query: 95  SLARRAIKDLMARGSIRMISAHSSQEIYTRATNT 129
           SLAR+AIKDLMARGSIRMISAHSSQ+IYTRATNT
Sbjct: 76  SLARKAIKDLMARGSIRMISAHSSQQIYTRATNT 109

[Close]
BLAST of Cp4.1LG01g25090 vs. TrEMBL
Match: F6GYW7_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_13s0147g00060 PE=4 SV=1)

HSP 1 Score: 170.2 bits (430), Expect = 1.6e-39
Identity = 86/90 (95.56%), Postives = 90/90 (100.00%), Query Frame = 1 

Query: 38  SGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKLITPSILSDRMRINGSLA 97
           SGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKLITPSILSDR+RINGSLA
Sbjct: 18  SGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKLITPSILSDRLRINGSLA 77

Query: 98  RRAIKDLMARGSIRMISAHSSQEIYTRATN 128
           RRAIKDLMARGSIRM+SAH+SQ+IYTRATN
Sbjct: 78  RRAIKDLMARGSIRMVSAHASQQIYTRATN 107

[Close]
BLAST of Cp4.1LG01g25090 vs. TrEMBL
Match: B9SCV0_RICCO (40S ribosomal protein S25, putative OS=Ricinus communis GN=RCOM_1281730 PE=4 SV=1)

HSP 1 Score: 170.2 bits (430), Expect = 1.6e-39
Identity = 87/91 (95.60%), Postives = 90/91 (98.90%), Query Frame = 1 

Query: 38  SGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKLITPSILSDRMRINGSLA 97
           SGGGKQKKKKWSKGKQKEKVNNMVLFDQ TYDKLLSEVPKYKLITPSILSDR+RINGSLA
Sbjct: 18  SGGGKQKKKKWSKGKQKEKVNNMVLFDQATYDKLLSEVPKYKLITPSILSDRLRINGSLA 77

Query: 98  RRAIKDLMARGSIRMISAHSSQEIYTRATNT 129
           RRAIKDLMARGSIRMISAH+SQ+IYTRATNT
Sbjct: 78  RRAIKDLMARGSIRMISAHASQQIYTRATNT 108

[Close]
BLAST of Cp4.1LG01g25090 vs. TAIR10
Match: AT2G21580.1 (AT2G21580.1 Ribosomal protein S25 family protein)

HSP 1 Score: 164.1 bits (414), Expect = 5.7e-41
Identity = 82/91 (90.11%), Postives = 89/91 (97.80%), Query Frame = 1 

Query: 38  SGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKLITPSILSDRMRINGSLA 97
           SGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLL+E PK+KLITPSILSDRMRINGSLA
Sbjct: 18  SGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLTEAPKFKLITPSILSDRMRINGSLA 77

Query: 98  RRAIKDLMARGSIRMISAHSSQEIYTRATNT 129
           RRAI++LMA+G IRM+SAHSSQ+IYTRATNT
Sbjct: 78  RRAIRELMAKGLIRMVSAHSSQQIYTRATNT 108

[Close]
BLAST of Cp4.1LG01g25090 vs. TAIR10
Match: AT4G39200.1 (AT4G39200.1 Ribosomal protein S25 family protein)

HSP 1 Score: 160.6 bits (405), Expect = 6.4e-40
Identity = 80/91 (87.91%), Postives = 88/91 (96.70%), Query Frame = 1 

Query: 38  SGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKLITPSILSDRMRINGSLA 97
           SGGGKQKKKKWSKGKQKEKVNNMVLFDQ TYDKLL+E PK+KLITPSILSDRMRINGSLA
Sbjct: 18  SGGGKQKKKKWSKGKQKEKVNNMVLFDQATYDKLLTEAPKFKLITPSILSDRMRINGSLA 77

Query: 98  RRAIKDLMARGSIRMISAHSSQEIYTRATNT 129
           RRAI++LMA+G IRM++AHSSQ+IYTRATNT
Sbjct: 78  RRAIRELMAKGVIRMVAAHSSQQIYTRATNT 108

[Close]
BLAST of Cp4.1LG01g25090 vs. TAIR10
Match: AT4G34555.1 (AT4G34555.1 Ribosomal protein S25 family protein)

HSP 1 Score: 159.1 bits (401), Expect = 1.8e-39
Identity = 79/90 (87.78%), Postives = 88/90 (97.78%), Query Frame = 1 

Query: 38  SGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKLITPSILSDRMRINGSLA 97
           SGGGKQKKKKWSKGKQKEKVNNMVLFDQ TYDKLLSE PK+KLITPSILSDR+RINGSLA
Sbjct: 18  SGGGKQKKKKWSKGKQKEKVNNMVLFDQATYDKLLSEAPKFKLITPSILSDRLRINGSLA 77

Query: 98  RRAIKDLMARGSIRMISAHSSQEIYTRATN 128
           RRAI++LMA+G+IRM+SAHSSQ+IYTRAT+
Sbjct: 78  RRAIRELMAKGTIRMVSAHSSQQIYTRATH 107

[Close]
BLAST of Cp4.1LG01g25090 vs. TAIR10
Match: AT2G16360.1 (AT2G16360.1 Ribosomal protein S25 family protein)

HSP 1 Score: 130.6 bits (327), Expect = 7.0e-31
Identity = 65/83 (78.31%), Postives = 76/83 (91.57%), Query Frame = 1 

Query: 44  KKKKWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKLITPSILSDRMRINGSLARRAIKD 103
           + +K SKGKQKEKVNNMVLFDQ TYDKL+SE PK+KLITPSILSDR+RINGSLAR+AI+D
Sbjct: 40  ESRKRSKGKQKEKVNNMVLFDQATYDKLMSEAPKFKLITPSILSDRLRINGSLARKAIRD 99

Query: 104 LMARGSIRMISAHSSQEIYTRAT 127
           LM +G+IRM+S HSSQ+I TRAT
Sbjct: 100 LMVKGTIRMVSTHSSQQINTRAT 122

[Close]
BLAST of Cp4.1LG01g25090 vs. NCBI nr
Match: gi|449446287|ref|XP_004140903.1| (PREDICTED: 40S ribosomal protein S25-2 [Cucumis sativus])

HSP 1 Score: 174.1 bits (440), Expect = 1.6e-40
Identity = 88/91 (96.70%), Postives = 91/91 (100.00%), Query Frame = 1 

Query: 38  SGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKLITPSILSDRMRINGSLA 97
           SGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKL+TPSILSDRMR+NGSLA
Sbjct: 18  SGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKLVTPSILSDRMRVNGSLA 77

Query: 98  RRAIKDLMARGSIRMISAHSSQEIYTRATNT 129
           RRAIKDLMARGSIRMISAHSSQ+IYTRATNT
Sbjct: 78  RRAIKDLMARGSIRMISAHSSQQIYTRATNT 108

[Close]
BLAST of Cp4.1LG01g25090 vs. NCBI nr
Match: gi|659113490|ref|XP_008456601.1| (PREDICTED: 40S ribosomal protein S25-2-like [Cucumis melo])

HSP 1 Score: 173.3 bits (438), Expect = 2.7e-40
Identity = 88/91 (96.70%), Postives = 91/91 (100.00%), Query Frame = 1 

Query: 38  SGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKLITPSILSDRMRINGSLA 97
           SGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKL+TPSILSDR+RINGSLA
Sbjct: 18  SGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKLVTPSILSDRLRINGSLA 77

Query: 98  RRAIKDLMARGSIRMISAHSSQEIYTRATNT 129
           RRAIKDLMARGSIRMISAHSSQ+IYTRATNT
Sbjct: 78  RRAIKDLMARGSIRMISAHSSQQIYTRATNT 108

[Close]
BLAST of Cp4.1LG01g25090 vs. NCBI nr
Match: gi|296080976|emb|CBI18574.3| (unnamed protein product [Vitis vinifera])

HSP 1 Score: 170.2 bits (430), Expect = 2.3e-39
Identity = 86/90 (95.56%), Postives = 90/90 (100.00%), Query Frame = 1 

Query: 38  SGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKLITPSILSDRMRINGSLA 97
           SGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKLITPSILSDR+RINGSLA
Sbjct: 61  SGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKLITPSILSDRLRINGSLA 120

Query: 98  RRAIKDLMARGSIRMISAHSSQEIYTRATN 128
           RRAIKDLMARGSIRM+SAH+SQ+IYTRATN
Sbjct: 121 RRAIKDLMARGSIRMVSAHASQQIYTRATN 150

[Close]
BLAST of Cp4.1LG01g25090 vs. NCBI nr
Match: gi|657997509|ref|XP_008391134.1| (PREDICTED: 40S ribosomal protein S25-like [Malus domestica])

HSP 1 Score: 170.2 bits (430), Expect = 2.3e-39
Identity = 86/91 (94.51%), Postives = 91/91 (100.00%), Query Frame = 1 

Query: 38  SGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKLITPSILSDRMRINGSLA 97
           SGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKLITPSILSDR+RINGSLA
Sbjct: 18  SGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKLITPSILSDRLRINGSLA 77

Query: 98  RRAIKDLMARGSIRMISAHSSQEIYTRATNT 129
           RRAIKDLMARGSIR+I+AH+SQ+IYTRATNT
Sbjct: 78  RRAIKDLMARGSIRLIAAHASQQIYTRATNT 108

[Close]
BLAST of Cp4.1LG01g25090 vs. NCBI nr
Match: gi|255565659|ref|XP_002523819.1| (PREDICTED: 40S ribosomal protein S25 [Ricinus communis])

HSP 1 Score: 170.2 bits (430), Expect = 2.3e-39
Identity = 87/91 (95.60%), Postives = 90/91 (98.90%), Query Frame = 1 

Query: 38  SGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKLITPSILSDRMRINGSLA 97
           SGGGKQKKKKWSKGKQKEKVNNMVLFDQ TYDKLLSEVPKYKLITPSILSDR+RINGSLA
Sbjct: 18  SGGGKQKKKKWSKGKQKEKVNNMVLFDQATYDKLLSEVPKYKLITPSILSDRLRINGSLA 77

Query: 98  RRAIKDLMARGSIRMISAHSSQEIYTRATNT 129
           RRAIKDLMARGSIRMISAH+SQ+IYTRATNT
Sbjct: 78  RRAIKDLMARGSIRMISAHASQQIYTRATNT 108

The following BLAST results are available for this feature:
BLAST of Cp4.1LG01g25090 vs. Swiss-Prot
Match NameE-valueIdentityDescription
RS252_ARATH1.0e-3990.1140S ribosomal protein S25-2 OS=Arabidopsis thaliana GN=RPS25B PE=2 SV=1[more]
RS25_SOLLC3.9e-3987.9140S ribosomal protein S25 OS=Solanum lycopersicum GN=RPS25 PE=3 SV=1[more]
RS254_ARATH1.1e-3887.9140S ribosomal protein S25-4 OS=Arabidopsis thaliana GN=RPS25E PE=2 SV=1[more]
RS253_ARATH3.3e-3887.7840S ribosomal protein S25-3 OS=Arabidopsis thaliana GN=RPS25D PE=3 SV=2[more]
RS251_ARATH4.0e-3684.2740S ribosomal protein S25-1 OS=Arabidopsis thaliana GN=RPS25A PE=3 SV=3[more]
BLAST of Cp4.1LG01g25090 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KB40_CUCSA1.1e-4096.70Uncharacterized protein OS=Cucumis sativus GN=Csa_6G045180 PE=4 SV=1[more]
A0A0C9S5M4_9SPER4.2e-4093.62TSA: Wollemia nobilis Ref_Wollemi_Transcript_12659_740 transcribed RNA sequence ... [more]
A0A0D6R5H1_ARACU4.2e-4093.62Uncharacterized protein OS=Araucaria cunninghamii PE=4 SV=1[more]
F6GYW7_VITVI1.6e-3995.56Putative uncharacterized protein OS=Vitis vinifera GN=VIT_13s0147g00060 PE=4 SV=... [more]
B9SCV0_RICCO1.6e-3995.6040S ribosomal protein S25, putative OS=Ricinus communis GN=RCOM_1281730 PE=4 SV=... [more]
BLAST of Cp4.1LG01g25090 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G21580.15.7e-4190.11 Ribosomal protein S25 family protein[more]
AT4G39200.16.4e-4087.91 Ribosomal protein S25 family protein[more]
AT4G34555.11.8e-3987.78 Ribosomal protein S25 family protein[more]
AT2G16360.17.0e-3178.31 Ribosomal protein S25 family protein[more]
BLAST of Cp4.1LG01g25090 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449446287|ref|XP_004140903.1|1.6e-4096.70PREDICTED: 40S ribosomal protein S25-2 [Cucumis sativus][more]
gi|659113490|ref|XP_008456601.1|2.7e-4096.70PREDICTED: 40S ribosomal protein S25-2-like [Cucumis melo][more]
gi|296080976|emb|CBI18574.3|2.3e-3995.56unnamed protein product [Vitis vinifera][more]
gi|657997509|ref|XP_008391134.1|2.3e-3994.51PREDICTED: 40S ribosomal protein S25-like [Malus domestica][more]
gi|255565659|ref|XP_002523819.1|2.3e-3995.60PREDICTED: 40S ribosomal protein S25 [Ricinus communis][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR004977Ribosomal_S25
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005840 ribosome
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG01g25090.1Cp4.1LG01g25090.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR004977Ribosomal protein S25PRODOMPD012268coord: 60..127
score: 3.0
IPR004977Ribosomal protein S25PANTHERPTHR12850FAMILY NOT NAMEDcoord: 37..128
score: 3.4
IPR004977Ribosomal protein S25PFAMPF03297Ribosomal_S25coord: 37..125
score: 7.5

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG01g25090Melon (DHL92) v3.6.1cpemedB460
Cp4.1LG01g25090Silver-seed gourdcarcpeB0965
Cp4.1LG01g25090Silver-seed gourdcarcpeB1158
Cp4.1LG01g25090Silver-seed gourdcarcpeB1176
Cp4.1LG01g25090Cucumber (Chinese Long) v3cpecucB0568
Cp4.1LG01g25090Wax gourdcpewgoB0526
Cp4.1LG01g25090Wax gourdcpewgoB0560
Cp4.1LG01g25090Cucurbita pepo (Zucchini)cpecpeB038
Cp4.1LG01g25090Cucurbita pepo (Zucchini)cpecpeB199
Cp4.1LG01g25090Cucurbita pepo (Zucchini)cpecpeB379
Cp4.1LG01g25090Cucumber (Gy14) v1cgycpeB0961
Cp4.1LG01g25090Cucurbita maxima (Rimu)cmacpeB318
Cp4.1LG01g25090Cucurbita maxima (Rimu)cmacpeB721
Cp4.1LG01g25090Cucurbita maxima (Rimu)cmacpeB734
Cp4.1LG01g25090Cucurbita moschata (Rifu)cmocpeB280
Cp4.1LG01g25090Cucurbita moschata (Rifu)cmocpeB401
Cp4.1LG01g25090Cucurbita moschata (Rifu)cmocpeB673
Cp4.1LG01g25090Cucurbita moschata (Rifu)cmocpeB687
Cp4.1LG01g25090Wild cucumber (PI 183967)cpecpiB460
Cp4.1LG01g25090Cucumber (Chinese Long) v2cpecuB459
Cp4.1LG01g25090Bottle gourd (USVL1VR-Ls)cpelsiB365
Cp4.1LG01g25090Bottle gourd (USVL1VR-Ls)cpelsiB382
Cp4.1LG01g25090Watermelon (Charleston Gray)cpewcgB398
Cp4.1LG01g25090Watermelon (Charleston Gray)cpewcgB417
Cp4.1LG01g25090Watermelon (97103) v1cpewmB395
Cp4.1LG01g25090Watermelon (97103) v1cpewmB438
Cp4.1LG01g25090Melon (DHL92) v3.5.1cpemeB396
Cp4.1LG01g25090Cucumber (Gy14) v2cgybcpeB635
Cp4.1LG01g25090Cucumber (Gy14) v2cgybcpeB797