Cp4.1LG01g24650 (gene) Cucurbita pepo (Zucchini)

NameCp4.1LG01g24650
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionUnknown protein
LocationCp4.1LG01 : 18905267 .. 18905587 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTTCCAGTGGTGGTGGTATTGGTGGTAGTGGTGGTAATAGTTTCAGGTCTTCTTTGAGGTCCGAGAGGCAAGGTGTTCATCATCATGTTCCGATTTCTTCTGCTCATAGTAGCTCCTTTTCTTTCCCCATTGCTGCTTCGAAAAGTGTTGGTCATGGACAGAGCCTTGGTTCTTCTGCTCGTAATAAAGCGTCTTCTGCTTCTCGACGATCTCTTACTCCTAATTTGAGGTCTTGTTCGTTTGATGTCGATGAAGGTTTTGATTTCTGTCTCCCGTTATTTGTCTGCGTGTTAGTTTATTTGCTTGCTTGGTTTTGA

mRNA sequence

ATGGCTTCCAGTGGTGGTGGTATTGGTGGTAGTGGTGGTAATAGTTTCAGGTCTTCTTTGAGGTCCGAGAGGCAAGGTGTTCATCATCATGTTCCGATTTCTTCTGCTCATAGTAGCTCCTTTTCTTTCCCCATTGCTGCTTCGAAAAGTGTTGGTCATGGACAGAGCCTTGGTTCTTCTGCTCGTAATAAAGCGTCTTCTGCTTCTCGACGATCTCTTACTCCTAATTTGAGGTCTTGTTCGTTTGATGTCGATGAAGGTTTTGATTTCTGTCTCCCGTTATTTGTCTGCGTGTTAGTTTATTTGCTTGCTTGGTTTTGA

Coding sequence (CDS)

ATGGCTTCCAGTGGTGGTGGTATTGGTGGTAGTGGTGGTAATAGTTTCAGGTCTTCTTTGAGGTCCGAGAGGCAAGGTGTTCATCATCATGTTCCGATTTCTTCTGCTCATAGTAGCTCCTTTTCTTTCCCCATTGCTGCTTCGAAAAGTGTTGGTCATGGACAGAGCCTTGGTTCTTCTGCTCGTAATAAAGCGTCTTCTGCTTCTCGACGATCTCTTACTCCTAATTTGAGGTCTTGTTCGTTTGATGTCGATGAAGGTTTTGATTTCTGTCTCCCGTTATTTGTCTGCGTGTTAGTTTATTTGCTTGCTTGGTTTTGA

Protein sequence

MASSGGGIGGSGGNSFRSSLRSERQGVHHHVPISSAHSSSFSFPIAASKSVGHGQSLGSSARNKASSASRRSLTPNLRSCSFDVDEGFDFCLPLFVCVLVYLLAWF
BLAST of Cp4.1LG01g24650 vs. TrEMBL
Match: A0A0A0KDQ5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G407060 PE=3 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 1.2e-21
Identity = 63/89 (70.79%), Postives = 72/89 (80.90%), Query Frame = 1

Query: 1  MASSGGGIGGSGGNSFRSSLRSERQGVHHH---VPISSAHSSSFSFPIAASKSVGHGQSL 60
          MAS+GG  GG  GN  RSSL+SERQGVHHH   +P+S AH++S SF IA+SKSVGHGQSL
Sbjct: 1  MASNGGAFGGLNGNGLRSSLKSERQGVHHHHHHIPLSPAHNTSSSFSIASSKSVGHGQSL 60

Query: 61 GSSARNKASSASRRSLTPNLRSCSFDVDE 87
           S+ RNK+SSASRRSLTPN RS SFD DE
Sbjct: 61 TSAVRNKSSSASRRSLTPNSRSLSFDGDE 89

BLAST of Cp4.1LG01g24650 vs. NCBI nr
Match: gi|778716082|ref|XP_011657504.1| (PREDICTED: armadillo repeat-containing kinesin-like protein 1 [Cucumis sativus])

HSP 1 Score: 110.5 bits (275), Expect = 1.8e-21
Identity = 63/89 (70.79%), Postives = 72/89 (80.90%), Query Frame = 1

Query: 1  MASSGGGIGGSGGNSFRSSLRSERQGVHHH---VPISSAHSSSFSFPIAASKSVGHGQSL 60
          MAS+GG  GG  GN  RSSL+SERQGVHHH   +P+S AH++S SF IA+SKSVGHGQSL
Sbjct: 1  MASNGGAFGGLNGNGLRSSLKSERQGVHHHHHHIPLSPAHNTSSSFSIASSKSVGHGQSL 60

Query: 61 GSSARNKASSASRRSLTPNLRSCSFDVDE 87
           S+ RNK+SSASRRSLTPN RS SFD DE
Sbjct: 61 TSAVRNKSSSASRRSLTPNSRSLSFDGDE 89

BLAST of Cp4.1LG01g24650 vs. NCBI nr
Match: gi|659113335|ref|XP_008456520.1| (PREDICTED: armadillo repeat-containing kinesin-like protein 1 [Cucumis melo])

HSP 1 Score: 109.4 bits (272), Expect = 3.9e-21
Identity = 64/89 (71.91%), Postives = 73/89 (82.02%), Query Frame = 1

Query: 1  MASSGGGIGGSGGNSFRSSLRSERQ-GVHHH--VPISSAHSSSFSFPIAASKSVGHGQSL 60
          MAS+GGG GG  GN  RSSL+S+RQ GVHHH  +P+S AH+SS SF IAASKSVGHGQSL
Sbjct: 1  MASNGGGFGGISGNGLRSSLKSDRQAGVHHHHHIPLSPAHNSSSSFSIAASKSVGHGQSL 60

Query: 61 GSSARNKASSASRRSLTPNLRSCSFDVDE 87
           S+ RNK+S+ASRRSLTPN RS SFD DE
Sbjct: 61 SSAVRNKSSTASRRSLTPNSRSLSFDGDE 89

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0KDQ5_CUCSA1.2e-2170.79Uncharacterized protein OS=Cucumis sativus GN=Csa_6G407060 PE=3 SV=1[more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
gi|778716082|ref|XP_011657504.1|1.8e-2170.79PREDICTED: armadillo repeat-containing kinesin-like protein 1 [Cucumis sativus][more]
gi|659113335|ref|XP_008456520.1|3.9e-2171.91PREDICTED: armadillo repeat-containing kinesin-like protein 1 [Cucumis melo][more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG01g24650.1Cp4.1LG01g24650.1mRNA


The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG01g24650Cucumber (Gy14) v2cgybcpeB211
Cp4.1LG01g24650Cucumber (Gy14) v2cgybcpeB635
Cp4.1LG01g24650Cucumber (Gy14) v2cgybcpeB800
Cp4.1LG01g24650Melon (DHL92) v3.6.1cpemedB461
Cp4.1LG01g24650Melon (DHL92) v3.6.1cpemedB446
Cp4.1LG01g24650Silver-seed gourdcarcpeB0679
Cp4.1LG01g24650Silver-seed gourdcarcpeB0965
Cp4.1LG01g24650Silver-seed gourdcarcpeB1159
Cp4.1LG01g24650Silver-seed gourdcarcpeB1176
Cp4.1LG01g24650Cucumber (Chinese Long) v3cpecucB0527
Cp4.1LG01g24650Cucumber (Chinese Long) v3cpecucB0571
Cp4.1LG01g24650Wax gourdcpewgoB0527
Cp4.1LG01g24650Wax gourdcpewgoB0560
Cp4.1LG01g24650Cucurbita pepo (Zucchini)cpecpeB038
Cp4.1LG01g24650Cucurbita pepo (Zucchini)cpecpeB075
Cp4.1LG01g24650Cucurbita pepo (Zucchini)cpecpeB199
Cp4.1LG01g24650Cucurbita pepo (Zucchini)cpecpeB207
Cp4.1LG01g24650Cucurbita pepo (Zucchini)cpecpeB379
Cp4.1LG01g24650Cucurbita pepo (Zucchini)cpecpeB384
Cp4.1LG01g24650Cucurbita pepo (Zucchini)cpecpeB407
Cp4.1LG01g24650Cucumber (Gy14) v1cgycpeB0316
Cp4.1LG01g24650Cucumber (Gy14) v1cgycpeB0372
Cp4.1LG01g24650Cucumber (Gy14) v1cgycpeB0807
Cp4.1LG01g24650Cucurbita maxima (Rimu)cmacpeB309
Cp4.1LG01g24650Cucurbita maxima (Rimu)cmacpeB435
Cp4.1LG01g24650Cucurbita maxima (Rimu)cmacpeB663
Cp4.1LG01g24650Cucurbita maxima (Rimu)cmacpeB721
Cp4.1LG01g24650Cucurbita maxima (Rimu)cmacpeB734
Cp4.1LG01g24650Cucurbita maxima (Rimu)cmacpeB877
Cp4.1LG01g24650Cucurbita moschata (Rifu)cmocpeB272
Cp4.1LG01g24650Cucurbita moschata (Rifu)cmocpeB401
Cp4.1LG01g24650Cucurbita moschata (Rifu)cmocpeB615
Cp4.1LG01g24650Cucurbita moschata (Rifu)cmocpeB673
Cp4.1LG01g24650Cucurbita moschata (Rifu)cmocpeB687
Cp4.1LG01g24650Cucurbita moschata (Rifu)cmocpeB814
Cp4.1LG01g24650Wild cucumber (PI 183967)cpecpiB387
Cp4.1LG01g24650Wild cucumber (PI 183967)cpecpiB425
Cp4.1LG01g24650Wild cucumber (PI 183967)cpecpiB463
Cp4.1LG01g24650Cucumber (Chinese Long) v2cpecuB427
Cp4.1LG01g24650Cucumber (Chinese Long) v2cpecuB387
Cp4.1LG01g24650Cucumber (Chinese Long) v2cpecuB462
Cp4.1LG01g24650Bottle gourd (USVL1VR-Ls)cpelsiB324
Cp4.1LG01g24650Bottle gourd (USVL1VR-Ls)cpelsiB365
Cp4.1LG01g24650Bottle gourd (USVL1VR-Ls)cpelsiB382
Cp4.1LG01g24650Watermelon (Charleston Gray)cpewcgB386
Cp4.1LG01g24650Watermelon (Charleston Gray)cpewcgB398
Cp4.1LG01g24650Watermelon (Charleston Gray)cpewcgB417
Cp4.1LG01g24650Watermelon (97103) v1cpewmB395
Cp4.1LG01g24650Watermelon (97103) v1cpewmB438
Cp4.1LG01g24650Watermelon (97103) v1cpewmB450
Cp4.1LG01g24650Melon (DHL92) v3.5.1cpemeB385
Cp4.1LG01g24650Melon (DHL92) v3.5.1cpemeB396