Cp4.1LG01g24140 (gene) Cucurbita pepo (Zucchini)

NameCp4.1LG01g24140
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionPlant protein 1589 of unknown function
LocationCp4.1LG01 : 19235552 .. 19236619 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
TTTGGACACAGTGATGAGAGTAGCCAAAGGACTGGTTTTGGCTGCCCTGTTGGAGTATGACACCTAGTTACTAGAGGCTACTCCCTTTGTCTGCTTGGAGGATTCCTCCTTAGGGTTTGGACCCCACACACGTGGGTTCAAGACAAAGAAACTCTCCTTCACGAATCTCCTCTAATCCCTTCCCAACCAATGATCCTTAATCCCTCACGTGGGACTCCTGGCCCCACCTCCCTCTTCCCTGCCCTTATTTAAGGACCTCACCCTTCAAAACCAGATCACTTACAAGCATCAACTCATGGCAGATTCTTCTTCTGCTTCATACATACATATGGTACTTCCTTCTTTTCATTATACGACCTAAATCCGCTCTATTTGCATCGCTGATACTCGCTTCTTCGGTGCAGGTGCAACACTTGATCGAGAAGTGTTTGATCTTTCGCATGACCAAAGAAGAATGCATGGATGCCCTCTTCAAACATGCAAATATTTCACCTGTCATCACGTCAACAGGTAGTAGTCTTTCATTGTTTCAATCAAACCCTTGAATGGTATCACGTCAACAGGTAGTAGTCTTTCATTGTGCTAGCCTTCTCGCTCTTCCCCGAAGGGGTTAGAGACGAAGCGGTGTGCCAGTAAGGATGCTGGGCCCCAAAGGGGGTGGATTTGGTAGGGTCCCACATCGATTGGAGAAAGGAACGAGTGCCAACGAGGACGTTGGGCCTCGAAGGGAGTGGATTGTGATGTCTCACATTGGTTGGGGAGGAGAACAAAACACCTTTTATAAGGGTGTGGAAACCTTCCCCTAGTAGACGGGTTTTAAAGCCTTGAGGGGAAGTCCGAAAGGGAAAGCCTAAAAAGGACAATATCTGCTAGCAGGGGGCGTGGGTCATTACACAAACACTTTACTTTACGTATTATGCAGTGTGGACCGAGTTAGAGAAGGAAAACAAGGAATTCTTCGAGGCGTATGCAGAATCTCAAAGCAATAAGGATAGAATGTCGGAGGAAGAGACGAGCCAAATGATCCAAAGGATGATCTTGGATTCCTCCAAAGGGGACCCTAAAAAC

mRNA sequence

TTTGGACACAGTGATGAGAGTAGCCAAAGGACTGGTTTTGGCTGCCCTGTTGGAGACCTCACCCTTCAAAACCAGATCACTTACAAGCATCAACTCATGGCAGATTCTTCTTCTGCTTCATACATACATATGGTGCAACACTTGATCGAGAAGTGTTTGATCTTTCGCATGACCAAAGAAGAATGCATGGATGCCCTCTTCAAACATGCAAATATTTCACCTGTCATCACGTCAACAGAATCTCAAAGCAATAAGGATAGAATGTCGGAGGAAGAGACGAGCCAAATGATCCAAAGGATGATCTTGGATTCCTCCAAAGGGGACCCTAAAAAC

Coding sequence (CDS)

TTTGGACACAGTGATGAGAGTAGCCAAAGGACTGGTTTTGGCTGCCCTGTTGGAGACCTCACCCTTCAAAACCAGATCACTTACAAGCATCAACTCATGGCAGATTCTTCTTCTGCTTCATACATACATATGGTGCAACACTTGATCGAGAAGTGTTTGATCTTTCGCATGACCAAAGAAGAATGCATGGATGCCCTCTTCAAACATGCAAATATTTCACCTGTCATCACGTCAACAGAATCTCAAAGCAATAAGGATAGAATGTCGGAGGAAGAGACGAGCCAAATGATCCAAAGGATGATCTTGGATTCCTCCAAAGGGGACCCTAAAAAC

Protein sequence

FGHSDESSQRTGFGCPVGDLTLQNQITYKHQLMADSSSASYIHMVQHLIEKCLIFRMTKEECMDALFKHANISPVITSTESQSNKDRMSEEETSQMIQRMILDSSKGDPKN
BLAST of Cp4.1LG01g24140 vs. TrEMBL
Match: A0A0A0KU49_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G505220 PE=4 SV=1)

HSP 1 Score: 116.7 bits (291), Expect = 1.8e-23
Identity = 65/96 (67.71%), Postives = 71/96 (73.96%), Query Frame = 1

Query: 33  MADSSSASYIHMVQHLIEKCLIFRMTKEECMDALFKHANISPVITST------------- 92
           MADSSS SY+HMVQHLIEKCLIF MTKEECMDAL KHA+I P+ITST             
Sbjct: 1   MADSSS-SYMHMVQHLIEKCLIFHMTKEECMDALSKHADIKPIITSTVWNELEKENKEFF 60

Query: 93  ----ESQSNKDRMSEEETSQMIQRMILDSSKGDPKN 112
               +S +N DRMSEEETSQMIQ+MI DS KGDPKN
Sbjct: 61  EAYAQSHNNSDRMSEEETSQMIQKMISDSGKGDPKN 95

BLAST of Cp4.1LG01g24140 vs. TrEMBL
Match: A0A0D2RAZ8_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_010G202600 PE=4 SV=1)

HSP 1 Score: 107.5 bits (267), Expect = 1.1e-20
Identity = 59/90 (65.56%), Postives = 65/90 (72.22%), Query Frame = 1

Query: 37  SSASYIHMVQHLIEKCLIFRMTKEECMDALFKHANISPVITST----------------- 96
           SS SYIHMVQH+IEKCLIF MTKEECM+AL KHANI PVITST                 
Sbjct: 4   SSTSYIHMVQHMIEKCLIFNMTKEECMEALSKHANIKPVITSTVWNELEKENKEFFEAYA 63

Query: 97  ESQSNKDRMSEEETSQMIQRMILDSSKGDP 110
           +SQS +DRMSEEETS+MIQ+MI DSS  DP
Sbjct: 64  QSQSKQDRMSEEETSRMIQKMISDSSSKDP 93

BLAST of Cp4.1LG01g24140 vs. TrEMBL
Match: M5XRP6_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa013960mg PE=4 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 1.4e-20
Identity = 59/93 (63.44%), Postives = 66/93 (70.97%), Query Frame = 1

Query: 33  MADSSSASYIHMVQHLIEKCLIFRMTKEECMDALFKHANISPVITST------------- 92
           M DSSSASYIHMVQHLIEKCLI+ M+KEECM+AL KHANI PVITST             
Sbjct: 1   MGDSSSASYIHMVQHLIEKCLIYHMSKEECMEALSKHANIEPVITSTVWNELEKVNKEFF 60

Query: 93  ----ESQSNKDRMSEEETSQMIQRMILDSSKGD 109
               +SQ+  DRMSEEETSQ+IQ+MI DS   D
Sbjct: 61  EAYAQSQNKGDRMSEEETSQLIQKMISDSKDSD 93

BLAST of Cp4.1LG01g24140 vs. TrEMBL
Match: Q9M3C7_ARATH (Putative uncharacterized protein At3g55240 OS=Arabidopsis thaliana GN=T26I12.120 PE=2 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 2.4e-20
Identity = 58/91 (63.74%), Postives = 69/91 (75.82%), Query Frame = 1

Query: 33  MADSSSASYIHMVQHLIEKCLIFRMTKEECMDALFKHANISPVITST------------- 92
           MADSSSASYIHMVQH+IEKCLIF M+KEEC++AL KHANI+PVITST             
Sbjct: 1   MADSSSASYIHMVQHMIEKCLIFHMSKEECVEALSKHANITPVITSTVWKELEKENKEFF 60

Query: 93  ----ESQSNKDRMSEEETSQMIQRMILDSSK 107
               E QS +++MSEEET+QMIQ++I DSSK
Sbjct: 61  KAYEERQSKQEQMSEEETNQMIQKIISDSSK 91

BLAST of Cp4.1LG01g24140 vs. TrEMBL
Match: V4L3N5_EUTSA (Uncharacterized protein OS=Eutrema salsugineum GN=EUTSA_v10010856mg PE=4 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 2.4e-20
Identity = 58/91 (63.74%), Postives = 69/91 (75.82%), Query Frame = 1

Query: 33  MADSSSASYIHMVQHLIEKCLIFRMTKEECMDALFKHANISPVITST------------- 92
           MADSSSASYIHMVQH+IEKCLIF M+KEEC++AL KHANI+PVITST             
Sbjct: 1   MADSSSASYIHMVQHMIEKCLIFHMSKEECVEALSKHANITPVITSTVWKELEKENKEFF 60

Query: 93  ----ESQSNKDRMSEEETSQMIQRMILDSSK 107
               E QS +++MSEEET+QMIQ++I DSSK
Sbjct: 61  KAYEERQSKQEQMSEEETNQMIQKIISDSSK 91

BLAST of Cp4.1LG01g24140 vs. TAIR10
Match: AT3G55240.1 (AT3G55240.1 Plant protein 1589 of unknown function)

HSP 1 Score: 106.3 bits (264), Expect = 1.2e-23
Identity = 58/91 (63.74%), Postives = 69/91 (75.82%), Query Frame = 1

Query: 33  MADSSSASYIHMVQHLIEKCLIFRMTKEECMDALFKHANISPVITST------------- 92
           MADSSSASYIHMVQH+IEKCLIF M+KEEC++AL KHANI+PVITST             
Sbjct: 1   MADSSSASYIHMVQHMIEKCLIFHMSKEECVEALSKHANITPVITSTVWKELEKENKEFF 60

Query: 93  ----ESQSNKDRMSEEETSQMIQRMILDSSK 107
               E QS +++MSEEET+QMIQ++I DSSK
Sbjct: 61  KAYEERQSKQEQMSEEETNQMIQKIISDSSK 91

BLAST of Cp4.1LG01g24140 vs. TAIR10
Match: AT5G02580.1 (AT5G02580.1 Plant protein 1589 of unknown function)

HSP 1 Score: 78.2 bits (191), Expect = 3.6e-15
Identity = 34/45 (75.56%), Postives = 40/45 (88.89%), Query Frame = 1

Query: 35 DSSSASYIHMVQHLIEKCLIFRMTKEECMDALFKHANISPVITST 80
          +SS ASYIH+V HLIE+C++F M KEECMDALFKHANI P+ITST
Sbjct: 5  NSSQASYIHLVHHLIEECIVFNMGKEECMDALFKHANIKPIITST 49

BLAST of Cp4.1LG01g24140 vs. TAIR10
Match: AT3G28990.1 (AT3G28990.1 Plant protein 1589 of unknown function)

HSP 1 Score: 76.6 bits (187), Expect = 1.0e-14
Identity = 42/86 (48.84%), Postives = 55/86 (63.95%), Query Frame = 1

Query: 33  MADSSSASYIHMVQHLIEKCLIFRMTKEECMDALFKHANISPVITST------------- 92
           M  SS A YIH+VQH+IE CL F M+KEECM+AL ++ANI+P+ITST             
Sbjct: 1   MRHSSPAVYIHLVQHMIETCLTFNMSKEECMEALSENANINPIITSTVWKELVKENKDFF 60

Query: 93  ----ESQSNKDRMSEEETSQMIQRMI 102
               +    K+ MSEEET+Q+IQ +I
Sbjct: 61  ETYEQKLMKKESMSEEETNQLIQNII 86

BLAST of Cp4.1LG01g24140 vs. TAIR10
Match: AT1G10657.1 (AT1G10657.1 Plant protein 1589 of unknown function)

HSP 1 Score: 55.5 bits (132), Expect = 2.5e-08
Identity = 23/40 (57.50%), Postives = 33/40 (82.50%), Query Frame = 1

Query: 40 SYIHMVQHLIEKCLIFRMTKEECMDALFKHANISPVITST 80
          SYI MVQH+IE+C++ RMT++EC+ AL  HA+I P++T T
Sbjct: 22 SYIRMVQHMIERCILLRMTRDECVKALDHHASILPLVTLT 61

BLAST of Cp4.1LG01g24140 vs. NCBI nr
Match: gi|449466552|ref|XP_004150990.1| (PREDICTED: uncharacterized protein LOC101208991 [Cucumis sativus])

HSP 1 Score: 116.7 bits (291), Expect = 2.6e-23
Identity = 65/96 (67.71%), Postives = 71/96 (73.96%), Query Frame = 1

Query: 33  MADSSSASYIHMVQHLIEKCLIFRMTKEECMDALFKHANISPVITST------------- 92
           MADSSS SY+HMVQHLIEKCLIF MTKEECMDAL KHA+I P+ITST             
Sbjct: 1   MADSSS-SYMHMVQHLIEKCLIFHMTKEECMDALSKHADIKPIITSTVWNELEKENKEFF 60

Query: 93  ----ESQSNKDRMSEEETSQMIQRMILDSSKGDPKN 112
               +S +N DRMSEEETSQMIQ+MI DS KGDPKN
Sbjct: 61  EAYAQSHNNSDRMSEEETSQMIQKMISDSGKGDPKN 95

BLAST of Cp4.1LG01g24140 vs. NCBI nr
Match: gi|659127086|ref|XP_008463517.1| (PREDICTED: uncharacterized protein LOC103501658 [Cucumis melo])

HSP 1 Score: 115.9 bits (289), Expect = 4.4e-23
Identity = 65/96 (67.71%), Postives = 71/96 (73.96%), Query Frame = 1

Query: 33  MADSSSASYIHMVQHLIEKCLIFRMTKEECMDALFKHANISPVITST------------- 92
           MADSSS SYIHMVQHLIEKCLIF MTKEECM+AL KHA+I P+ITST             
Sbjct: 1   MADSSS-SYIHMVQHLIEKCLIFHMTKEECMNALSKHADIKPIITSTVWSELEKENKEFF 60

Query: 93  ----ESQSNKDRMSEEETSQMIQRMILDSSKGDPKN 112
               +S +N DRMSEEETSQMIQ+MI DS KGDPKN
Sbjct: 61  EAYAQSHNNSDRMSEEETSQMIQKMISDSGKGDPKN 95

BLAST of Cp4.1LG01g24140 vs. NCBI nr
Match: gi|1021505863|ref|XP_016196343.1| (PREDICTED: uncharacterized protein LOC107637444 [Arachis ipaensis])

HSP 1 Score: 111.3 bits (277), Expect = 1.1e-21
Identity = 63/89 (70.79%), Postives = 68/89 (76.40%), Query Frame = 1

Query: 34  ADSSSASYIHMVQHLIEKCLIFRMTKEECMDALFKHANISPVITST--------ESQSNK 93
           + SSSASYIHMVQHLIEKCLIF MTKEECM+AL KHANI PVITST        ES+S  
Sbjct: 5   SSSSSASYIHMVQHLIEKCLIFHMTKEECMEALSKHANIKPVITSTACIMHAYSESKSKN 64

Query: 94  DRMSEEETSQMIQRMILD---SSKGDPKN 112
           DRMSEEET+QMIQ+MI D   SSKG   N
Sbjct: 65  DRMSEEETNQMIQKMISDSSSSSKGSTNN 93

BLAST of Cp4.1LG01g24140 vs. NCBI nr
Match: gi|694351831|ref|XP_009357652.1| (PREDICTED: uncharacterized protein LOC103948365 [Pyrus x bretschneideri])

HSP 1 Score: 109.8 bits (273), Expect = 3.2e-21
Identity = 61/93 (65.59%), Postives = 66/93 (70.97%), Query Frame = 1

Query: 33  MADSSSASYIHMVQHLIEKCLIFRMTKEECMDALFKHANISPVITST------------- 92
           M DSSSASYIHMVQHLIEKCLI+ MTKEECM+AL KHANI PVITST             
Sbjct: 1   MGDSSSASYIHMVQHLIEKCLIYHMTKEECMEALSKHANIQPVITSTVWNELEKVNKEFF 60

Query: 93  ----ESQSNKDRMSEEETSQMIQRMILDSSKGD 109
               ESQ+  DRMSEEETSQ+IQ+MI DS   D
Sbjct: 61  EAYEESQNKGDRMSEEETSQLIQKMISDSKDSD 93

BLAST of Cp4.1LG01g24140 vs. NCBI nr
Match: gi|657943835|ref|XP_008371124.1| (PREDICTED: uncharacterized protein LOC103434533 [Malus domestica])

HSP 1 Score: 109.0 bits (271), Expect = 5.4e-21
Identity = 60/93 (64.52%), Postives = 66/93 (70.97%), Query Frame = 1

Query: 33  MADSSSASYIHMVQHLIEKCLIFRMTKEECMDALFKHANISPVITST------------- 92
           M DSSSASYIHMVQHLIEKCLI+ MTKEECM+AL KHANI PVITST             
Sbjct: 1   MGDSSSASYIHMVQHLIEKCLIYHMTKEECMEALSKHANIQPVITSTVWNELEKVNKEFF 60

Query: 93  ----ESQSNKDRMSEEETSQMIQRMILDSSKGD 109
               ESQ+  DRMSEEETSQ+IQ+M+ DS   D
Sbjct: 61  EAYEESQNKGDRMSEEETSQLIQKMLSDSKDSD 93

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0KU49_CUCSA1.8e-2367.71Uncharacterized protein OS=Cucumis sativus GN=Csa_5G505220 PE=4 SV=1[more]
A0A0D2RAZ8_GOSRA1.1e-2065.56Uncharacterized protein OS=Gossypium raimondii GN=B456_010G202600 PE=4 SV=1[more]
M5XRP6_PRUPE1.4e-2063.44Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa013960mg PE=4 SV=1[more]
Q9M3C7_ARATH2.4e-2063.74Putative uncharacterized protein At3g55240 OS=Arabidopsis thaliana GN=T26I12.120... [more]
V4L3N5_EUTSA2.4e-2063.74Uncharacterized protein OS=Eutrema salsugineum GN=EUTSA_v10010856mg PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT3G55240.11.2e-2363.74 Plant protein 1589 of unknown function[more]
AT5G02580.13.6e-1575.56 Plant protein 1589 of unknown function[more]
AT3G28990.11.0e-1448.84 Plant protein 1589 of unknown function[more]
AT1G10657.12.5e-0857.50 Plant protein 1589 of unknown function[more]
Match NameE-valueIdentityDescription
gi|449466552|ref|XP_004150990.1|2.6e-2367.71PREDICTED: uncharacterized protein LOC101208991 [Cucumis sativus][more]
gi|659127086|ref|XP_008463517.1|4.4e-2367.71PREDICTED: uncharacterized protein LOC103501658 [Cucumis melo][more]
gi|1021505863|ref|XP_016196343.1|1.1e-2170.79PREDICTED: uncharacterized protein LOC107637444 [Arachis ipaensis][more]
gi|694351831|ref|XP_009357652.1|3.2e-2165.59PREDICTED: uncharacterized protein LOC103948365 [Pyrus x bretschneideri][more]
gi|657943835|ref|XP_008371124.1|5.4e-2164.52PREDICTED: uncharacterized protein LOC103434533 [Malus domestica][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR006476CHP01589_pln
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG01g24140.1Cp4.1LG01g24140.1mRNA


Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006476Conserved hypothetical protein CHP01589, plantPFAMPF09713A_thal_3526coord: 45..79
score: 7.2
IPR006476Conserved hypothetical protein CHP01589, plantTIGRFAMsTIGR01589TIGR01589coord: 42..79
score: 3.5
NoneNo IPR availablePANTHERPTHR31871FAMILY NOT NAMEDcoord: 35..105
score: 8.1
NoneNo IPR availablePANTHERPTHR31871:SF10GENOMIC DNA, CHROMOSOME 3, TAC CLONE:K5K13coord: 35..105
score: 8.1

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG01g24140Cucumber (Gy14) v1cgycpeB0016
Cp4.1LG01g24140Cucurbita pepo (Zucchini)cpecpeB199
Cp4.1LG01g24140Cucurbita pepo (Zucchini)cpecpeB211
Cp4.1LG01g24140Cucurbita pepo (Zucchini)cpecpeB384
Cp4.1LG01g24140Cucurbita pepo (Zucchini)cpecpeB407
Cp4.1LG01g24140Cucurbita maxima (Rimu)cmacpeB312
Cp4.1LG01g24140Cucurbita maxima (Rimu)cmacpeB317
Cp4.1LG01g24140Cucurbita maxima (Rimu)cmacpeB721
Cp4.1LG01g24140Cucurbita maxima (Rimu)cmacpeB877
Cp4.1LG01g24140Cucurbita moschata (Rifu)cmocpeB276
Cp4.1LG01g24140Cucurbita moschata (Rifu)cmocpeB279
Cp4.1LG01g24140Cucurbita moschata (Rifu)cmocpeB673
Cp4.1LG01g24140Cucurbita moschata (Rifu)cmocpeB814
Cp4.1LG01g24140Wild cucumber (PI 183967)cpecpiB416
Cp4.1LG01g24140Wild cucumber (PI 183967)cpecpiB446
Cp4.1LG01g24140Cucumber (Chinese Long) v2cpecuB417
Cp4.1LG01g24140Cucumber (Chinese Long) v2cpecuB445
Cp4.1LG01g24140Bottle gourd (USVL1VR-Ls)cpelsiB324
Cp4.1LG01g24140Bottle gourd (USVL1VR-Ls)cpelsiB332
Cp4.1LG01g24140Bottle gourd (USVL1VR-Ls)cpelsiB336
Cp4.1LG01g24140Watermelon (Charleston Gray)cpewcgB340
Cp4.1LG01g24140Watermelon (Charleston Gray)cpewcgB344
Cp4.1LG01g24140Watermelon (97103) v1cpewmB378
Cp4.1LG01g24140Watermelon (97103) v1cpewmB381
Cp4.1LG01g24140Melon (DHL92) v3.5.1cpemeB350
Cp4.1LG01g24140Melon (DHL92) v3.5.1cpemeB358
Cp4.1LG01g24140Cucumber (Gy14) v2cgybcpeB627
Cp4.1LG01g24140Cucumber (Gy14) v2cgybcpeB654
Cp4.1LG01g24140Melon (DHL92) v3.6.1cpemedB410
Cp4.1LG01g24140Melon (DHL92) v3.6.1cpemedB418
Cp4.1LG01g24140Silver-seed gourdcarcpeB0370
Cp4.1LG01g24140Silver-seed gourdcarcpeB0374
Cp4.1LG01g24140Silver-seed gourdcarcpeB0965
Cp4.1LG01g24140Cucumber (Chinese Long) v3cpecucB0554
Cp4.1LG01g24140Cucumber (Chinese Long) v3cpecucB0519
Cp4.1LG01g24140Wax gourdcpewgoB0499