Cp4.1LG01g24110 (gene) Cucurbita pepo (Zucchini)

NameCp4.1LG01g24110
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionPlant protein 1589 of unknown function
LocationCp4.1LG01 : 19223230 .. 19223682 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCAGATTCTGATGCTTCATACATACATATGGTACTTACCTTCTTCGTTATACGACCTAAATCCGTTCTATTTGCATTACGTACGTACGTTAATTATACTTTGATGTAGGTGCAACACTTGATCGAGAAGTGTCTGATCTTCCGCATGACCAAAGAAGAGTGCATGGAAGCCCTCTCCAAACATGCAAATATTTCACCTATCATCACGTCAACAGGTAGTAGTAGTAGTAGTCGTCATTTTTCATTGTTTCAATCAAACCCTTGAACGCTATGATTGAGCTAAGTCGTTCCATATTATGCAGTGTGGACCGAGTTAGAGAAGGAAAACAAGGAATTCTTCGAGACATATGCACAATCTCAAAGAGACAAGGATAGAATGTCTGAGGAAGAGACAAACCAAATGATCCAACGGATGATCTCGGAATCCTCGAAAGGGGACCCTAAAAACTAA

mRNA sequence

ATGGCAGATTCTGATGCTTCATACATACATATGGTGCAACACTTGATCGAGAAGTGTCTGATCTTCCGCATGACCAAAGAAGAGTGCATGGAAGCCCTCTCCAAACATGCAAATATTTCACCTATCATCACGTCAACAGTGTGGACCGAGTTAGAGAAGGAAAACAAGGAATTCTTCGAGACATATGCACAATCTCAAAGAGACAAGGATAGAATGTCTGAGGAAGAGACAAACCAAATGATCCAACGGATGATCTCGGAATCCTCGAAAGGGGACCCTAAAAACTAA

Coding sequence (CDS)

ATGGCAGATTCTGATGCTTCATACATACATATGGTGCAACACTTGATCGAGAAGTGTCTGATCTTCCGCATGACCAAAGAAGAGTGCATGGAAGCCCTCTCCAAACATGCAAATATTTCACCTATCATCACGTCAACAGTGTGGACCGAGTTAGAGAAGGAAAACAAGGAATTCTTCGAGACATATGCACAATCTCAAAGAGACAAGGATAGAATGTCTGAGGAAGAGACAAACCAAATGATCCAACGGATGATCTCGGAATCCTCGAAAGGGGACCCTAAAAACTAA

Protein sequence

MADSDASYIHMVQHLIEKCLIFRMTKEECMEALSKHANISPIITSTVWTELEKENKEFFETYAQSQRDKDRMSEEETNQMIQRMISESSKGDPKN
BLAST of Cp4.1LG01g24110 vs. TrEMBL
Match: A0A0A0KU49_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G505220 PE=4 SV=1)

HSP 1 Score: 158.3 bits (399), Expect = 4.6e-36
Identity = 78/95 (82.11%), Postives = 86/95 (90.53%), Query Frame = 1

Query: 1  MADSDASYIHMVQHLIEKCLIFRMTKEECMEALSKHANISPIITSTVWTELEKENKEFFE 60
          MADS +SY+HMVQHLIEKCLIF MTKEECM+ALSKHA+I PIITSTVW ELEKENKEFFE
Sbjct: 1  MADSSSSYMHMVQHLIEKCLIFHMTKEECMDALSKHADIKPIITSTVWNELEKENKEFFE 60

Query: 61 TYAQSQRDKDRMSEEETNQMIQRMISESSKGDPKN 96
           YAQS  + DRMSEEET+QMIQ+MIS+S KGDPKN
Sbjct: 61 AYAQSHNNSDRMSEEETSQMIQKMISDSGKGDPKN 95

BLAST of Cp4.1LG01g24110 vs. TrEMBL
Match: A0A0D2RAZ8_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_010G202600 PE=4 SV=1)

HSP 1 Score: 152.1 bits (383), Expect = 3.3e-34
Identity = 75/93 (80.65%), Postives = 82/93 (88.17%), Query Frame = 1

Query: 1  MADSDASYIHMVQHLIEKCLIFRMTKEECMEALSKHANISPIITSTVWTELEKENKEFFE 60
          M DS  SYIHMVQH+IEKCLIF MTKEECMEALSKHANI P+ITSTVW ELEKENKEFFE
Sbjct: 1  MGDSSTSYIHMVQHMIEKCLIFNMTKEECMEALSKHANIKPVITSTVWNELEKENKEFFE 60

Query: 61 TYAQSQRDKDRMSEEETNQMIQRMISESSKGDP 94
           YAQSQ  +DRMSEEET++MIQ+MIS+SS  DP
Sbjct: 61 AYAQSQSKQDRMSEEETSRMIQKMISDSSSKDP 93

BLAST of Cp4.1LG01g24110 vs. TrEMBL
Match: B9SAL5_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1103690 PE=4 SV=1)

HSP 1 Score: 152.1 bits (383), Expect = 3.3e-34
Identity = 76/90 (84.44%), Postives = 82/90 (91.11%), Query Frame = 1

Query: 1  MADSDASYIHMVQHLIEKCLIFRMTKEECMEALSKHANISPIITSTVWTELEKENKEFFE 60
          M DS ASYIHMVQHLIEKCLIF MTKEECMEALSKHANI+P+ITSTVW ELEKENKEFFE
Sbjct: 1  MGDSSASYIHMVQHLIEKCLIFHMTKEECMEALSKHANITPVITSTVWNELEKENKEFFE 60

Query: 61 TYAQSQRDKDRMSEEETNQMIQRMISESSK 91
           Y +S+R  DRMSEEET+QMIQ+MISESSK
Sbjct: 61 AYIESKRKDDRMSEEETSQMIQKMISESSK 90

BLAST of Cp4.1LG01g24110 vs. TrEMBL
Match: V4TI04_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10033177mg PE=4 SV=1)

HSP 1 Score: 152.1 bits (383), Expect = 3.3e-34
Identity = 76/89 (85.39%), Postives = 81/89 (91.01%), Query Frame = 1

Query: 1  MADSDASYIHMVQHLIEKCLIFRMTKEECMEALSKHANISPIITSTVWTELEKENKEFFE 60
          M +S ASYIHMVQHLIEKCLIFRMTKEECMEALSKHANI P+ITSTVW ELEKENKEFFE
Sbjct: 1  MGESSASYIHMVQHLIEKCLIFRMTKEECMEALSKHANIKPVITSTVWNELEKENKEFFE 60

Query: 61 TYAQSQRDKDRMSEEETNQMIQRMISESS 90
           YAQSQ  +DRMSEEETNQMIQ+MIS +S
Sbjct: 61 AYAQSQSKEDRMSEEETNQMIQKMISTNS 89

BLAST of Cp4.1LG01g24110 vs. TrEMBL
Match: W9R2B2_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_025422 PE=4 SV=1)

HSP 1 Score: 151.0 bits (380), Expect = 7.4e-34
Identity = 75/90 (83.33%), Postives = 81/90 (90.00%), Query Frame = 1

Query: 1  MADSDASYIHMVQHLIEKCLIFRMTKEECMEALSKHANISPIITSTVWTELEKENKEFFE 60
          M DS ASYIHMVQHLIEKCLIFRM KEECMEALSKHANI P+ITSTVW ELEKENKEFFE
Sbjct: 1  MGDSSASYIHMVQHLIEKCLIFRMNKEECMEALSKHANIKPVITSTVWNELEKENKEFFE 60

Query: 61 TYAQSQRDKDRMSEEETNQMIQRMISESSK 91
           YAQSQ  +D+MSEEET+QMIQ+M S+SSK
Sbjct: 61 AYAQSQSKEDKMSEEETSQMIQKMFSDSSK 90

BLAST of Cp4.1LG01g24110 vs. TAIR10
Match: AT3G55240.1 (AT3G55240.1 Plant protein 1589 of unknown function)

HSP 1 Score: 137.5 bits (345), Expect = 4.3e-33
Identity = 69/91 (75.82%), Postives = 82/91 (90.11%), Query Frame = 1

Query: 1  MADSD-ASYIHMVQHLIEKCLIFRMTKEECMEALSKHANISPIITSTVWTELEKENKEFF 60
          MADS  ASYIHMVQH+IEKCLIF M+KEEC+EALSKHANI+P+ITSTVW ELEKENKEFF
Sbjct: 1  MADSSSASYIHMVQHMIEKCLIFHMSKEECVEALSKHANITPVITSTVWKELEKENKEFF 60

Query: 61 ETYAQSQRDKDRMSEEETNQMIQRMISESSK 91
          + Y + Q  +++MSEEETNQMIQ++IS+SSK
Sbjct: 61 KAYEERQSKQEQMSEEETNQMIQKIISDSSK 91

BLAST of Cp4.1LG01g24110 vs. TAIR10
Match: AT3G28990.1 (AT3G28990.1 Plant protein 1589 of unknown function)

HSP 1 Score: 118.2 bits (295), Expect = 2.7e-27
Identity = 59/83 (71.08%), Postives = 69/83 (83.13%), Query Frame = 1

Query: 4  SDASYIHMVQHLIEKCLIFRMTKEECMEALSKHANISPIITSTVWTELEKENKEFFETYA 63
          S A YIH+VQH+IE CL F M+KEECMEALS++ANI+PIITSTVW EL KENK+FFETY 
Sbjct: 5  SPAVYIHLVQHMIETCLTFNMSKEECMEALSENANINPIITSTVWKELVKENKDFFETYE 64

Query: 64 QSQRDKDRMSEEETNQMIQRMIS 87
          Q    K+ MSEEETNQ+IQ +IS
Sbjct: 65 QKLMKKESMSEEETNQLIQNIIS 87

BLAST of Cp4.1LG01g24110 vs. TAIR10
Match: AT5G02580.1 (AT5G02580.1 Plant protein 1589 of unknown function)

HSP 1 Score: 100.9 bits (250), Expect = 4.4e-22
Identity = 51/86 (59.30%), Postives = 67/86 (77.91%), Query Frame = 1

Query: 4  SDASYIHMVQHLIEKCLIFRMTKEECMEALSKHANISPIITSTVWTELEKENKEFFETYA 63
          S ASYIH+V HLIE+C++F M KEECM+AL KHANI PIITSTVW EL KENKEFFE Y 
Sbjct: 7  SQASYIHLVHHLIEECIVFNMGKEECMDALFKHANIKPIITSTVWKELAKENKEFFEAY- 66

Query: 64 QSQRDKDRMSEEETNQMIQRMISESS 90
            +R ++  +E+ET + I+ ++S ++
Sbjct: 67 -ERRREEIPTEKETARRIRDLLSRTT 90

BLAST of Cp4.1LG01g24110 vs. TAIR10
Match: AT1G10657.1 (AT1G10657.1 Plant protein 1589 of unknown function)

HSP 1 Score: 69.3 bits (168), Expect = 1.4e-12
Identity = 34/80 (42.50%), Postives = 48/80 (60.00%), Query Frame = 1

Query: 7   SYIHMVQHLIEKCLIFRMTKEECMEALSKHANISPIITST-------------------- 63
           SYI MVQH+IE+C++ RMT++EC++AL  HA+I P++T T                    
Sbjct: 22  SYIRMVQHMIERCILLRMTRDECVKALDHHASILPLVTLTVFSYILGFASVLQKKLHDIF 81

BLAST of Cp4.1LG01g24110 vs. TAIR10
Match: AT2G46420.1 (AT2G46420.1 Plant protein 1589 of unknown function)

HSP 1 Score: 53.5 bits (127), Expect = 8.1e-08
Identity = 25/54 (46.30%), Postives = 36/54 (66.67%), Query Frame = 1

Query: 9   IHMVQHLIEKCLIFRMTKEECMEALSKHANISPIITSTVWTELEKENKEFFETY 63
           I +VQ+LIE+CL   M+++E ++ L   A I P  T+ VW +LE+EN EFF  Y
Sbjct: 52  IELVQNLIERCLQLYMSRDEVVKTLLTRARIDPGFTTLVWQKLEEENAEFFRAY 105

BLAST of Cp4.1LG01g24110 vs. NCBI nr
Match: gi|659127086|ref|XP_008463517.1| (PREDICTED: uncharacterized protein LOC103501658 [Cucumis melo])

HSP 1 Score: 159.1 bits (401), Expect = 3.9e-36
Identity = 79/95 (83.16%), Postives = 86/95 (90.53%), Query Frame = 1

Query: 1  MADSDASYIHMVQHLIEKCLIFRMTKEECMEALSKHANISPIITSTVWTELEKENKEFFE 60
          MADS +SYIHMVQHLIEKCLIF MTKEECM ALSKHA+I PIITSTVW+ELEKENKEFFE
Sbjct: 1  MADSSSSYIHMVQHLIEKCLIFHMTKEECMNALSKHADIKPIITSTVWSELEKENKEFFE 60

Query: 61 TYAQSQRDKDRMSEEETNQMIQRMISESSKGDPKN 96
           YAQS  + DRMSEEET+QMIQ+MIS+S KGDPKN
Sbjct: 61 AYAQSHNNSDRMSEEETSQMIQKMISDSGKGDPKN 95

BLAST of Cp4.1LG01g24110 vs. NCBI nr
Match: gi|449466552|ref|XP_004150990.1| (PREDICTED: uncharacterized protein LOC101208991 [Cucumis sativus])

HSP 1 Score: 158.3 bits (399), Expect = 6.6e-36
Identity = 78/95 (82.11%), Postives = 86/95 (90.53%), Query Frame = 1

Query: 1  MADSDASYIHMVQHLIEKCLIFRMTKEECMEALSKHANISPIITSTVWTELEKENKEFFE 60
          MADS +SY+HMVQHLIEKCLIF MTKEECM+ALSKHA+I PIITSTVW ELEKENKEFFE
Sbjct: 1  MADSSSSYMHMVQHLIEKCLIFHMTKEECMDALSKHADIKPIITSTVWNELEKENKEFFE 60

Query: 61 TYAQSQRDKDRMSEEETNQMIQRMISESSKGDPKN 96
           YAQS  + DRMSEEET+QMIQ+MIS+S KGDPKN
Sbjct: 61 AYAQSHNNSDRMSEEETSQMIQKMISDSGKGDPKN 95

BLAST of Cp4.1LG01g24110 vs. NCBI nr
Match: gi|255564072|ref|XP_002523034.1| (PREDICTED: uncharacterized protein LOC8260844 [Ricinus communis])

HSP 1 Score: 152.1 bits (383), Expect = 4.8e-34
Identity = 76/90 (84.44%), Postives = 82/90 (91.11%), Query Frame = 1

Query: 1  MADSDASYIHMVQHLIEKCLIFRMTKEECMEALSKHANISPIITSTVWTELEKENKEFFE 60
          M DS ASYIHMVQHLIEKCLIF MTKEECMEALSKHANI+P+ITSTVW ELEKENKEFFE
Sbjct: 1  MGDSSASYIHMVQHLIEKCLIFHMTKEECMEALSKHANITPVITSTVWNELEKENKEFFE 60

Query: 61 TYAQSQRDKDRMSEEETNQMIQRMISESSK 91
           Y +S+R  DRMSEEET+QMIQ+MISESSK
Sbjct: 61 AYIESKRKDDRMSEEETSQMIQKMISESSK 90

BLAST of Cp4.1LG01g24110 vs. NCBI nr
Match: gi|823240447|ref|XP_012452840.1| (PREDICTED: uncharacterized protein LOC105774815 [Gossypium raimondii])

HSP 1 Score: 152.1 bits (383), Expect = 4.8e-34
Identity = 75/93 (80.65%), Postives = 82/93 (88.17%), Query Frame = 1

Query: 1  MADSDASYIHMVQHLIEKCLIFRMTKEECMEALSKHANISPIITSTVWTELEKENKEFFE 60
          M DS  SYIHMVQH+IEKCLIF MTKEECMEALSKHANI P+ITSTVW ELEKENKEFFE
Sbjct: 1  MGDSSTSYIHMVQHMIEKCLIFNMTKEECMEALSKHANIKPVITSTVWNELEKENKEFFE 60

Query: 61 TYAQSQRDKDRMSEEETNQMIQRMISESSKGDP 94
           YAQSQ  +DRMSEEET++MIQ+MIS+SS  DP
Sbjct: 61 AYAQSQSKQDRMSEEETSRMIQKMISDSSSKDP 93

BLAST of Cp4.1LG01g24110 vs. NCBI nr
Match: gi|567887188|ref|XP_006436116.1| (hypothetical protein CICLE_v10033177mg [Citrus clementina])

HSP 1 Score: 152.1 bits (383), Expect = 4.8e-34
Identity = 76/89 (85.39%), Postives = 81/89 (91.01%), Query Frame = 1

Query: 1  MADSDASYIHMVQHLIEKCLIFRMTKEECMEALSKHANISPIITSTVWTELEKENKEFFE 60
          M +S ASYIHMVQHLIEKCLIFRMTKEECMEALSKHANI P+ITSTVW ELEKENKEFFE
Sbjct: 1  MGESSASYIHMVQHLIEKCLIFRMTKEECMEALSKHANIKPVITSTVWNELEKENKEFFE 60

Query: 61 TYAQSQRDKDRMSEEETNQMIQRMISESS 90
           YAQSQ  +DRMSEEETNQMIQ+MIS +S
Sbjct: 61 AYAQSQSKEDRMSEEETNQMIQKMISTNS 89

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0KU49_CUCSA4.6e-3682.11Uncharacterized protein OS=Cucumis sativus GN=Csa_5G505220 PE=4 SV=1[more]
A0A0D2RAZ8_GOSRA3.3e-3480.65Uncharacterized protein OS=Gossypium raimondii GN=B456_010G202600 PE=4 SV=1[more]
B9SAL5_RICCO3.3e-3484.44Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1103690 PE=4 SV=1[more]
V4TI04_9ROSI3.3e-3485.39Uncharacterized protein OS=Citrus clementina GN=CICLE_v10033177mg PE=4 SV=1[more]
W9R2B2_9ROSA7.4e-3483.33Uncharacterized protein OS=Morus notabilis GN=L484_025422 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT3G55240.14.3e-3375.82 Plant protein 1589 of unknown function[more]
AT3G28990.12.7e-2771.08 Plant protein 1589 of unknown function[more]
AT5G02580.14.4e-2259.30 Plant protein 1589 of unknown function[more]
AT1G10657.11.4e-1242.50 Plant protein 1589 of unknown function[more]
AT2G46420.18.1e-0846.30 Plant protein 1589 of unknown function[more]
Match NameE-valueIdentityDescription
gi|659127086|ref|XP_008463517.1|3.9e-3683.16PREDICTED: uncharacterized protein LOC103501658 [Cucumis melo][more]
gi|449466552|ref|XP_004150990.1|6.6e-3682.11PREDICTED: uncharacterized protein LOC101208991 [Cucumis sativus][more]
gi|255564072|ref|XP_002523034.1|4.8e-3484.44PREDICTED: uncharacterized protein LOC8260844 [Ricinus communis][more]
gi|823240447|ref|XP_012452840.1|4.8e-3480.65PREDICTED: uncharacterized protein LOC105774815 [Gossypium raimondii][more]
gi|567887188|ref|XP_006436116.1|4.8e-3485.39hypothetical protein CICLE_v10033177mg [Citrus clementina][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR006476CHP01589_pln
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0032502 developmental process
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG01g24110.1Cp4.1LG01g24110.1mRNA


Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006476Conserved hypothetical protein CHP01589, plantPFAMPF09713A_thal_3526coord: 12..63
score: 3.4
IPR006476Conserved hypothetical protein CHP01589, plantTIGRFAMsTIGR01589TIGR01589coord: 9..64
score: 1.4
NoneNo IPR availablePANTHERPTHR31871FAMILY NOT NAMEDcoord: 1..89
score: 1.7
NoneNo IPR availablePANTHERPTHR31871:SF10GENOMIC DNA, CHROMOSOME 3, TAC CLONE:K5K13coord: 1..89
score: 1.7

The following gene(s) are paralogous to this gene:

None