Cp4.1LG01g23490 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG01g23490
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
Description50S ribosomal protein L7/L12
LocationCp4.1LG01 : 19662619 .. 19663194 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTTCCACACTCTCCACTCTCACCACCCTCCGTTCCCCAACGCACCTTTCTTATTCCCATTCCTCTTTTTCCACTCAGTCCTCCATTTCCACAACCCTCCAATTTCCTTTTAACCCTTCCTCCACCGCTACCTCCCACCGTGCCACCTACCTCCGTCCCATTGCCGCCGTGTCAGCCCCTGAGAAAATCGAAAAGCTCGGCGCCGACATCTCCAACCTCACTCTCGAAGAAGCCCGCATTCTGGTCGACTTTCTTCAAGATAAGCTTGGGGTCTCCGCTGCCGCATTCGCCCCCGCCGCCGTCGTCGCAGCACCCGGCGCCGCAGCCGGGGACGCGGCCGCGGAGGCGGTGGAGGAGAAGACGGAATTCGATGTGGTCATTGAGGACGTGCCAAGCAATGCTAGAATTGCAGTGATTAAGGCAGTGAGGGCATTGACAAGCTTGGCTTTGAAGGAAGCCAAAGAACTCATCGAAGGTTTGCCCAAGAAGTTCAAGGAAGGGATTTCGAAAGAAGAGGCTGAGGATGCCAAGAAACAGCTTGAAGAAGCTGGAGCTAAAATCGCCATTGTTTAA

mRNA sequence

ATGGCTTCCACACTCTCCACTCTCACCACCCTCCGTTCCCCAACGCACCTTTCTTATTCCCATTCCTCTTTTTCCACTCAGTCCTCCATTTCCACAACCCTCCAATTTCCTTTTAACCCTTCCTCCACCGCTACCTCCCACCGTGCCACCTACCTCCGTCCCATTGCCGCCGTGTCAGCCCCTGAGAAAATCGAAAAGCTCGGCGCCGACATCTCCAACCTCACTCTCGAAGAAGCCCGCATTCTGGTCGACTTTCTTCAAGATAAGCTTGGGGTCTCCGCTGCCGCATTCGCCCCCGCCGCCGTCGTCGCAGCACCCGGCGCCGCAGCCGGGGACGCGGCCGCGGAGGCGGTGGAGGAGAAGACGGAATTCGATGTGGTCATTGAGGACGTGCCAAGCAATGCTAGAATTGCAGTGATTAAGGCAGTGAGGGCATTGACAAGCTTGGCTTTGAAGGAAGCCAAAGAACTCATCGAAGGTTTGCCCAAGAAGTTCAAGGAAGGGATTTCGAAAGAAGAGGCTGAGGATGCCAAGAAACAGCTTGAAGAAGCTGGAGCTAAAATCGCCATTGTTTAA

Coding sequence (CDS)

ATGGCTTCCACACTCTCCACTCTCACCACCCTCCGTTCCCCAACGCACCTTTCTTATTCCCATTCCTCTTTTTCCACTCAGTCCTCCATTTCCACAACCCTCCAATTTCCTTTTAACCCTTCCTCCACCGCTACCTCCCACCGTGCCACCTACCTCCGTCCCATTGCCGCCGTGTCAGCCCCTGAGAAAATCGAAAAGCTCGGCGCCGACATCTCCAACCTCACTCTCGAAGAAGCCCGCATTCTGGTCGACTTTCTTCAAGATAAGCTTGGGGTCTCCGCTGCCGCATTCGCCCCCGCCGCCGTCGTCGCAGCACCCGGCGCCGCAGCCGGGGACGCGGCCGCGGAGGCGGTGGAGGAGAAGACGGAATTCGATGTGGTCATTGAGGACGTGCCAAGCAATGCTAGAATTGCAGTGATTAAGGCAGTGAGGGCATTGACAAGCTTGGCTTTGAAGGAAGCCAAAGAACTCATCGAAGGTTTGCCCAAGAAGTTCAAGGAAGGGATTTCGAAAGAAGAGGCTGAGGATGCCAAGAAACAGCTTGAAGAAGCTGGAGCTAAAATCGCCATTGTTTAA

Protein sequence

MASTLSTLTTLRSPTHLSYSHSSFSTQSSISTTLQFPFNPSSTATSHRATYLRPIAAVSAPEKIEKLGADISNLTLEEARILVDFLQDKLGVSAAAFAPAAVVAAPGAAAGDAAAEAVEEKTEFDVVIEDVPSNARIAVIKAVRALTSLALKEAKELIEGLPKKFKEGISKEEAEDAKKQLEEAGAKIAIV
Homology
[Close]
BLAST of Cp4.1LG01g23490 vs. Swiss-Prot
Match: RK12_NICSY (50S ribosomal protein L12, chloroplastic OS=Nicotiana sylvestris PE=2 SV=1)

HSP 1 Score: 207.2 bits (526), Expect = 1.6e-52
Identity = 134/193 (69.43%), Postives = 159/193 (82.38%), Query Frame = 1 

Query: 1   MASTLSTLTTLRSPTHLSYSHSSFSTQSSI---STTLQFPFNPSSTATSHRATYLRPIAA 60
           MASTLST+T LRSP+      ++ ST +SI     TL+FP   +    + RAT+LRP+AA
Sbjct: 1   MASTLSTIT-LRSPS----PSTATSTHASIPFPKKTLEFPIR-TPKLQNRRATFLRPLAA 60

Query: 61  VSAPEKIEKLGADISNLTLEEARILVDFLQDKLGVSAAAFAPAAVVAAPGAAAGDAAAEA 120
           V APEK+ +LG +ISNLTL +A+ LV++LQDKLGV+AA+FAPAAVVAAPGAAA   A   
Sbjct: 61  VEAPEKVVQLGDEISNLTLADAQKLVEYLQDKLGVTAASFAPAAVVAAPGAAA--EAPAV 120

Query: 121 VEEKTEFDVVIEDVPSNARIAVIKAVRALTSLALKEAKELIEGLPKKFKEGISKEEAEDA 180
           VEEKTEFDVVI++VPSNARIA IKAVRALTSLALKEAKELIEGLPKKFKEG+SK+EAEDA
Sbjct: 121 VEEKTEFDVVIDEVPSNARIATIKAVRALTSLALKEAKELIEGLPKKFKEGVSKDEAEDA 180

Query: 181 KKQLEEAGAKIAI 191
           KKQLEEAGAK++I
Sbjct: 181 KKQLEEAGAKVSI 185

[Close]
BLAST of Cp4.1LG01g23490 vs. Swiss-Prot
Match: RK12_TOBAC (50S ribosomal protein L12, chloroplastic OS=Nicotiana tabacum GN=RPL12 PE=1 SV=1)

HSP 1 Score: 204.9 bits (520), Expect = 7.8e-52
Identity = 135/196 (68.88%), Postives = 155/196 (79.08%), Query Frame = 1 

Query: 1   MASTLSTLTTLRSPTHLSYSHSSFSTQSSISTTLQFPFN----PSSTATSH--RATYLRP 60
           MASTLST+T LRSP        S ST SS   ++ FP      P  T   H  RAT+LRP
Sbjct: 1   MASTLSTIT-LRSP--------SPSTASSTHASIPFPKKALEFPIRTPKLHHRRATFLRP 60

Query: 61  IAAVSAPEKIEKLGADISNLTLEEARILVDFLQDKLGVSAAAFAPAAVVAAPGAAAGDAA 120
           +AAV APEK+ +LG +ISNLTL +A+ LV++LQDKLGV+AA+FAPAAV AAPGAAA   A
Sbjct: 61  LAAVEAPEKVVQLGDEISNLTLADAQKLVEYLQDKLGVTAASFAPAAVAAAPGAAA--EA 120

Query: 121 AEAVEEKTEFDVVIEDVPSNARIAVIKAVRALTSLALKEAKELIEGLPKKFKEGISKEEA 180
              VEEKTEFDVVI++VPSNARIA IKAVRALTSLALKEAKELIEGLPKKFKEG+SK+EA
Sbjct: 121 PAVVEEKTEFDVVIDEVPSNARIATIKAVRALTSLALKEAKELIEGLPKKFKEGVSKDEA 180

Query: 181 EDAKKQLEEAGAKIAI 191
           EDAKKQLEEAGAK++I
Sbjct: 181 EDAKKQLEEAGAKVSI 185

[Close]
BLAST of Cp4.1LG01g23490 vs. Swiss-Prot
Match: RK12_SPIOL (50S ribosomal protein L12, chloroplastic OS=Spinacia oleracea GN=RPL12 PE=1 SV=2)

HSP 1 Score: 204.5 bits (519), Expect = 1.0e-51
Identity = 132/194 (68.04%), Postives = 156/194 (80.41%), Query Frame = 1 

Query: 1   MASTLSTLTTLRSPTHLSYSHSSFSTQSSISTTLQFPFNPSS---TATSHRATYLRPIAA 60
           MA+T +T+ TL  P+  S+ +SS  T       LQFPF  ++   + +S R T LRPIAA
Sbjct: 1   MAAT-TTMATLNLPSLTSHPNSS--TFPKHPQPLQFPFRTTTNPISLSSTRTTRLRPIAA 60

Query: 61  VSAPEKIEKLGADISNLTLEEARILVDFLQDKLGVSAAAFAPAAVVAAPGAAAGDAAAEA 120
           V APEKIE+LG  +S LTLEEAR+LVD+LQDKLGVSAA+FAPAA VAAPGA A   AA A
Sbjct: 61  VEAPEKIEQLGTQLSGLTLEEARVLVDWLQDKLGVSAASFAPAAAVAAPGAPAD--AAPA 120

Query: 121 VEEKTEFDVVIEDVPSNARIAVIKAVRALTSLALKEAKELIEGLPKKFKEGISKEEAEDA 180
           VEEKTEFDV I++VPSNARI+VIKAVRALTSL LKEAKELIEGLPKK KEG+SK++AEDA
Sbjct: 121 VEEKTEFDVSIDEVPSNARISVIKAVRALTSLGLKEAKELIEGLPKKLKEGVSKDDAEDA 180

Query: 181 KKQLEEAGAKIAIV 192
           KKQLE+AGAK++IV
Sbjct: 181 KKQLEDAGAKVSIV 189

[Close]
BLAST of Cp4.1LG01g23490 vs. Swiss-Prot
Match: RK121_ARATH (50S ribosomal protein L12-1, chloroplastic OS=Arabidopsis thaliana GN=RPL12A PE=2 SV=1)

HSP 1 Score: 198.4 bits (503), Expect = 7.3e-50
Identity = 129/195 (66.15%), Postives = 153/195 (78.46%), Query Frame = 1 

Query: 2   ASTLSTLTTLRS---PTHLSYSHSSFSTQSSISTTLQFPFN---PSSTATSHRATYLRPI 61
           ++TLS  TT+RS   PT  S +H    T     TT++FP      SS+  +HRAT+LRPI
Sbjct: 3   STTLSIATTIRSSSYPTLASINHFPSRT-----TTIEFPSRFGGGSSSTLTHRATHLRPI 62

Query: 62  AAVSAPEKIEKLGADISNLTLEEARILVDFLQDKLGVSAAAFAPAAVVAAPGAAAGDAAA 121
           AAV APEKIEK+G++IS+LTLEEARILVD+LQDK GVS  + APAA  AA  A A   AA
Sbjct: 63  AAVEAPEKIEKIGSEISSLTLEEARILVDYLQDKFGVSPLSLAPAA--AAVAAPADGGAA 122

Query: 122 EAVEEKTEFDVVIEDVPSNARIAVIKAVRALTSLALKEAKELIEGLPKKFKEGISKEEAE 181
             VEE+TEFDVVI +VPS++RIAVIKAVRALTSLALKEAKELIEGLPKKFKEGI+K+EAE
Sbjct: 123 AVVEEQTEFDVVINEVPSSSRIAVIKAVRALTSLALKEAKELIEGLPKKFKEGITKDEAE 182

Query: 182 DAKKQLEEAGAKIAI 191
           +AKK LEEAGAK++I
Sbjct: 183 EAKKTLEEAGAKVSI 190

[Close]
BLAST of Cp4.1LG01g23490 vs. Swiss-Prot
Match: RK123_ARATH (50S ribosomal protein L12-3, chloroplastic OS=Arabidopsis thaliana GN=RPL12C PE=2 SV=2)

HSP 1 Score: 196.8 bits (499), Expect = 2.1e-49
Identity = 128/191 (67.02%), Postives = 154/191 (80.63%), Query Frame = 1 

Query: 2   ASTLSTLTTLRSPTHLSYSHSSFSTQSSIS--TTLQFPFNPSSTATSHRATYLRPIAAVS 61
           ++TLS  TT+RS + L+    S ST   +S  T ++FPF  SS++ SHRA  LRPI+AV 
Sbjct: 3   STTLSIATTIRSSSPLT----SASTHHFLSKPTAIEFPFRLSSSS-SHRAINLRPISAVE 62

Query: 62  APEKIEKLGADISNLTLEEARILVDFLQDKLGVSAAAFAPAAVVAAPGAAAGDAAAEAVE 121
           APEKIEK+G++IS+LTLEEARILVD+LQDK GVS  + APAA  AA  A A   AA  VE
Sbjct: 63  APEKIEKIGSEISSLTLEEARILVDYLQDKFGVSPLSLAPAA--AAVAAPADGGAAAVVE 122

Query: 122 EKTEFDVVIEDVPSNARIAVIKAVRALTSLALKEAKELIEGLPKKFKEGISKEEAEDAKK 181
           E+TEFDVVI +VPS++RIAVIKAVRALTSLALKEAKELIEGLPKKFKEGI+K+EAE+AKK
Sbjct: 123 EQTEFDVVINEVPSSSRIAVIKAVRALTSLALKEAKELIEGLPKKFKEGITKDEAEEAKK 182

Query: 182 QLEEAGAKIAI 191
            LEEAGAK++I
Sbjct: 183 TLEEAGAKVSI 186

[Close]
BLAST of Cp4.1LG01g23490 vs. TrEMBL
Match: A0A0A0KSG5_CUCSA (SocL12 (Chloroplast ribosomal protein) OS=Cucumis sativus GN=Csa_5G524750 PE=3 SV=1)

HSP 1 Score: 255.4 bits (651), Expect = 5.6e-65
Identity = 157/192 (81.77%), Postives = 169/192 (88.02%), Query Frame = 1 

Query: 1   MASTLSTLTTLRSPTHLSYSHSSFSTQSSISTTLQFPFNPSSTATSHRATYLRPIAAVSA 60
           MAS+LSTLT L +P HL  SHSSFS  S   TTLQFP+         R T+LRPIAAVSA
Sbjct: 1   MASSLSTLT-LNTPLHLPRSHSSFSPLSFRPTTLQFPY--------RRPTHLRPIAAVSA 60

Query: 61  PEKIEKLGADISNLTLEEARILVDFLQDKLGVSAAAFAPAAVVAAP-GAAAGDAAAEAVE 120
           PEKIEKLG+DIS+LTLEEAR+LVDFLQDKLGVSAAAFAPAAVVAAP GA  G+AAAEAVE
Sbjct: 61  PEKIEKLGSDISSLTLEEARLLVDFLQDKLGVSAAAFAPAAVVAAPGGAVGGEAAAEAVE 120

Query: 121 EKTEFDVVIEDVPSNARIAVIKAVRALTSLALKEAKELIEGLPKKFKEGISKEEAEDAKK 180
           EKTEFDVVIEDVPSNARIAVIK+VRA+TSLALKEAKELIEGLPKKFKEG+SKEEA+DAKK
Sbjct: 121 EKTEFDVVIEDVPSNARIAVIKSVRAMTSLALKEAKELIEGLPKKFKEGVSKEEADDAKK 180

Query: 181 QLEEAGAKIAIV 192
           QLEEAGAKIAIV
Sbjct: 181 QLEEAGAKIAIV 183

[Close]
BLAST of Cp4.1LG01g23490 vs. TrEMBL
Match: M5XA31_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa011994mg PE=3 SV=1)

HSP 1 Score: 239.6 bits (610), Expect = 3.2e-60
Identity = 147/192 (76.56%), Postives = 168/192 (87.50%), Query Frame = 1 

Query: 1   MASTLSTLTTLRSPTHLSYSHSSFSTQSSISTTLQFPFNPSSTATSHRATYLRPIAAVSA 60
           MA++LSTLT L +P++L+   +S    ++  TTLQFPFNP + + +HRAT+LRP+AAV A
Sbjct: 1   MAASLSTLT-LGTPSYLNTPATSSFPPNTPKTTLQFPFNPQNPSLTHRATHLRPLAAVEA 60

Query: 61  PEKIEKLGADISNLTLEEARILVDFLQDKLGVSAAAFAPAAVVAA-PGAAAGDAAAEAVE 120
           PEKIEKLGADIS+LTLEEARILVDFLQDKLGVSAAA APAA VAA PGAA G A    VE
Sbjct: 61  PEKIEKLGADISSLTLEEARILVDFLQDKLGVSAAALAPAAAVAAAPGAAEGPAV---VE 120

Query: 121 EKTEFDVVIEDVPSNARIAVIKAVRALTSLALKEAKELIEGLPKKFKEGISKEEAEDAKK 180
           EKTEFDVVIE+VPSNARIAVIKAVRALTSLALKEAKELIEGLPKKF+EGISK+EA++AKK
Sbjct: 121 EKTEFDVVIEEVPSNARIAVIKAVRALTSLALKEAKELIEGLPKKFREGISKDEADEAKK 180

Query: 181 QLEEAGAKIAIV 192
           QLEEAGAK+AIV
Sbjct: 181 QLEEAGAKVAIV 188

[Close]
BLAST of Cp4.1LG01g23490 vs. TrEMBL
Match: F6HUY7_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_14s0066g01110 PE=3 SV=1)

HSP 1 Score: 226.5 bits (576), Expect = 2.8e-56
Identity = 148/192 (77.08%), Postives = 164/192 (85.42%), Query Frame = 1 

Query: 1   MASTLSTLTTLRSPTHLSYSHSSFSTQSSISTTLQFPF-NPSSTATSHRATYLRPIAAVS 60
           MA++LSTLT LRSP+  + S SSF T S    TL FPF NP      HRAT++RPI+AV+
Sbjct: 1   MAASLSTLT-LRSPSCPTLS-SSFPTHS-FKQTLDFPFRNPKII---HRATFVRPISAVA 60

Query: 61  APEKIEKLGADISNLTLEEARILVDFLQDKLGVSAAAFAPAAVVAAPGAAAGDAAAEAVE 120
           APEKIEK+G ++SNLTLEEARILVD+LQDKLGVSAAAFAPAAV  APGA A DA A  VE
Sbjct: 61  APEKIEKIGTELSNLTLEEARILVDWLQDKLGVSAAAFAPAAVAVAPGAVA-DAPA-VVE 120

Query: 121 EKTEFDVVIEDVPSNARIAVIKAVRALTSLALKEAKELIEGLPKKFKEGISKEEAEDAKK 180
           EKTEFDV+IEDVPSNARIA IKAVRALTSLALKEAKELIEGLPKKFKEG+SKEEAE+AKK
Sbjct: 121 EKTEFDVMIEDVPSNARIATIKAVRALTSLALKEAKELIEGLPKKFKEGVSKEEAEEAKK 180

Query: 181 QLEEAGAKIAIV 192
           QLEEAGAK+AIV
Sbjct: 181 QLEEAGAKVAIV 184

[Close]
BLAST of Cp4.1LG01g23490 vs. TrEMBL
Match: W9SPV7_9ROSA (50S ribosomal protein L12-1 OS=Morus notabilis GN=L484_020519 PE=3 SV=1)

HSP 1 Score: 223.4 bits (568), Expect = 2.4e-55
Identity = 142/194 (73.20%), Postives = 160/194 (82.47%), Query Frame = 1 

Query: 1   MASTLSTLTTLRSPTHLSYSH-SSFSTQSSISTTLQFPFNPS--STATSHRATYLRPIAA 60
           MASTLS LT LRSP++ + +  SS +  S     LQFPFNP   S + SHRA+++RP+AA
Sbjct: 1   MASTLSALT-LRSPSYPTPTALSSPALASPKPAFLQFPFNPQNPSLSASHRASHVRPLAA 60

Query: 61  VSAPEKIEKLGADISNLTLEEARILVDFLQDKLGVSAAAFAPAAVVAAPGAAAGDAAAEA 120
           V+ PEKIEK+G +I+ LTLEEA+ LVDFLQDKLGVSAAA APAA V A   A GDA A A
Sbjct: 61  VAVPEKIEKIGDEIAGLTLEEAKGLVDFLQDKLGVSAAALAPAAAVVAVPGAGGDAEAAA 120

Query: 121 VEEKTEFDVVIEDVPSNARIAVIKAVRALTSLALKEAKELIEGLPKKFKEGISKEEAEDA 180
            EEKTEFDVVIEDVPSN RIAVIKAVRALTSLALKEAKELIEGLPKKFKEG+SK+EAEDA
Sbjct: 121 PEEKTEFDVVIEDVPSNVRIAVIKAVRALTSLALKEAKELIEGLPKKFKEGVSKDEAEDA 180

Query: 181 KKQLEEAGAKIAIV 192
           KKQLEEAGAK+AIV
Sbjct: 181 KKQLEEAGAKVAIV 193

[Close]
BLAST of Cp4.1LG01g23490 vs. TrEMBL
Match: A0A067L3E5_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23894 PE=3 SV=1)

HSP 1 Score: 221.5 bits (563), Expect = 8.9e-55
Identity = 139/192 (72.40%), Postives = 161/192 (83.85%), Query Frame = 1 

Query: 1   MASTLSTLTTLRSPTHLSYSHSSFSTQSSISTTLQFPF--NPSSTATSHRATYLRPIAAV 60
           MA++LS+  TL   +  SY   + + Q  +    +FPF  N +S+  +HR+T+LRPIAAV
Sbjct: 1   MAASLSSTRTLTLSSPSSYPTLTTTKQFFV----EFPFRSNFASSTLTHRSTHLRPIAAV 60

Query: 61  SAPEKIEKLGADISNLTLEEARILVDFLQDKLGVSAAAFAPAAVVAAPGAAAGDAAAEAV 120
           SAPEKIEKLG +IS+LTLEEAR LVD+LQDKLGVSAAAFAPAAVVAAPGAAA D    AV
Sbjct: 61  SAPEKIEKLGTEISSLTLEEARTLVDYLQDKLGVSAAAFAPAAVVAAPGAAA-DTGPAAV 120

Query: 121 EEKTEFDVVIEDVPSNARIAVIKAVRALTSLALKEAKELIEGLPKKFKEGISKEEAEDAK 180
           EEKTEFDVVI +VPSNARIAVIKAVRALTSLALKEAK+LIEGLPKKFKEG+SKEEAE+AK
Sbjct: 121 EEKTEFDVVINEVPSNARIAVIKAVRALTSLALKEAKDLIEGLPKKFKEGVSKEEAEEAK 180

Query: 181 KQLEEAGAKIAI 191
           KQLEEAGAK++I
Sbjct: 181 KQLEEAGAKVSI 187

[Close]
BLAST of Cp4.1LG01g23490 vs. TAIR10
Match: AT3G27830.1 (AT3G27830.1 ribosomal protein L12-A)

HSP 1 Score: 198.4 bits (503), Expect = 4.1e-51
Identity = 129/195 (66.15%), Postives = 153/195 (78.46%), Query Frame = 1 

Query: 2   ASTLSTLTTLRS---PTHLSYSHSSFSTQSSISTTLQFPFN---PSSTATSHRATYLRPI 61
           ++TLS  TT+RS   PT  S +H    T     TT++FP      SS+  +HRAT+LRPI
Sbjct: 3   STTLSIATTIRSSSYPTLASINHFPSRT-----TTIEFPSRFGGGSSSTLTHRATHLRPI 62

Query: 62  AAVSAPEKIEKLGADISNLTLEEARILVDFLQDKLGVSAAAFAPAAVVAAPGAAAGDAAA 121
           AAV APEKIEK+G++IS+LTLEEARILVD+LQDK GVS  + APAA  AA  A A   AA
Sbjct: 63  AAVEAPEKIEKIGSEISSLTLEEARILVDYLQDKFGVSPLSLAPAA--AAVAAPADGGAA 122

Query: 122 EAVEEKTEFDVVIEDVPSNARIAVIKAVRALTSLALKEAKELIEGLPKKFKEGISKEEAE 181
             VEE+TEFDVVI +VPS++RIAVIKAVRALTSLALKEAKELIEGLPKKFKEGI+K+EAE
Sbjct: 123 AVVEEQTEFDVVINEVPSSSRIAVIKAVRALTSLALKEAKELIEGLPKKFKEGITKDEAE 182

Query: 182 DAKKQLEEAGAKIAI 191
           +AKK LEEAGAK++I
Sbjct: 183 EAKKTLEEAGAKVSI 190

[Close]
BLAST of Cp4.1LG01g23490 vs. TAIR10
Match: AT3G27850.1 (AT3G27850.1 ribosomal protein L12-C)

HSP 1 Score: 196.8 bits (499), Expect = 1.2e-50
Identity = 128/191 (67.02%), Postives = 154/191 (80.63%), Query Frame = 1 

Query: 2   ASTLSTLTTLRSPTHLSYSHSSFSTQSSIS--TTLQFPFNPSSTATSHRATYLRPIAAVS 61
           ++TLS  TT+RS + L+    S ST   +S  T ++FPF  SS++ SHRA  LRPI+AV 
Sbjct: 3   STTLSIATTIRSSSPLT----SASTHHFLSKPTAIEFPFRLSSSS-SHRAINLRPISAVE 62

Query: 62  APEKIEKLGADISNLTLEEARILVDFLQDKLGVSAAAFAPAAVVAAPGAAAGDAAAEAVE 121
           APEKIEK+G++IS+LTLEEARILVD+LQDK GVS  + APAA  AA  A A   AA  VE
Sbjct: 63  APEKIEKIGSEISSLTLEEARILVDYLQDKFGVSPLSLAPAA--AAVAAPADGGAAAVVE 122

Query: 122 EKTEFDVVIEDVPSNARIAVIKAVRALTSLALKEAKELIEGLPKKFKEGISKEEAEDAKK 181
           E+TEFDVVI +VPS++RIAVIKAVRALTSLALKEAKELIEGLPKKFKEGI+K+EAE+AKK
Sbjct: 123 EQTEFDVVINEVPSSSRIAVIKAVRALTSLALKEAKELIEGLPKKFKEGITKDEAEEAKK 182

Query: 182 QLEEAGAKIAI 191
            LEEAGAK++I
Sbjct: 183 TLEEAGAKVSI 186

[Close]
BLAST of Cp4.1LG01g23490 vs. TAIR10
Match: AT3G27840.1 (AT3G27840.1 ribosomal protein L12-B)

HSP 1 Score: 166.4 bits (420), Expect = 1.7e-41
Identity = 109/193 (56.48%), Postives = 140/193 (72.54%), Query Frame = 1 

Query: 2   ASTLSTLTTLRSPTHLSYSHSSFSTQSSISTTLQFPFN---PSSTATSHRATYLRPIAAV 61
           A+TLS  TT+RS +  S   S+    S    +++FPF+    SS+  SHRA YL PI+AV
Sbjct: 3   ATTLSIATTIRSSSFSSGLASAHHFPSR-PLSIEFPFSFGVSSSSTLSHRAIYLHPISAV 62

Query: 62  SAPEKIEKLGADISNLTLEEARILVDFLQDKLGVSAAAFAPAAVVAAPGAAAGDAAAEAV 121
             P+KI+K+G++IS+LTLEE+RILVD++QDK GVS    APAA    P    G A A +V
Sbjct: 63  KTPKKIKKIGSEISSLTLEESRILVDYVQDKFGVSILFSAPAAAALPPPLDNGGATA-SV 122

Query: 122 EEKTEFDVVIEDVPSNARIAVIKAVRALTSLALKEAKELIEGLPKKFKEGISKEEAEDAK 181
           E +T FDVVI DVP   RIAVI A+RA+TSL+L E+KELIEG PKKFKEG++K+EAE+ K
Sbjct: 123 ERQTTFDVVINDVPRGNRIAVITAIRAMTSLSLSESKELIEGFPKKFKEGVTKDEAEEDK 182

Query: 182 KQLEEAGAKIAIV 192
            QLEEAGAK++IV
Sbjct: 183 TQLEEAGAKVSIV 193

[Close]
BLAST of Cp4.1LG01g23490 vs. TAIR10
Match: AT4G36420.1 (AT4G36420.1 Ribosomal protein L12 family protein)

HSP 1 Score: 78.2 bits (191), Expect = 6.2e-15
Identity = 55/136 (40.44%), Postives = 82/136 (60.29%), Query Frame = 1 

Query: 62  EKIEKLGADISNLTLEEARILVDFLQDKLGVSA----AAFAPAAVVAAPGA---AAGDAA 121
           E + K+  ++SNLTL E   L + L+ KL +S     AA  P   +   GA   A G+  
Sbjct: 43  ENVSKIVNELSNLTLLETMDLTEILRQKLNISELPVMAAMMPGMSLPGSGASKSAGGEGK 102

Query: 122 AEAVEEKTEFDVVIEDVPSNARIAVIKAVRALTSLALKEAKELIEGLPKKFKEGISKEEA 181
            +  E KT FDV+++   + ++I VIK VR +T+L LKEAK+L+E  P   K+G+SKEEA
Sbjct: 103 EKKKEAKTAFDVMLQAYDAVSKIKVIKEVRTITALGLKEAKDLVEKAPTLLKKGVSKEEA 162

Query: 182 EDAKKQLEEAGAKIAI 191
           E   ++L+  GAK+A+
Sbjct: 163 EKIIEKLKAVGAKVAM 178

[Close]
BLAST of Cp4.1LG01g23490 vs. TAIR10
Match: AT4G37660.1 (AT4G37660.1 Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family protein)

HSP 1 Score: 61.6 bits (148), Expect = 6.0e-10
Identity = 55/155 (35.48%), Postives = 81/155 (52.26%), Query Frame = 1 

Query: 40  PSSTATSHRATYLRPIAAVSAPE----KIEKLGADISNLTLEEARILVDFLQDKLGVSAA 99
           P S+AT H       + AV++PE    K+E++  D+  L   E          K+G++  
Sbjct: 21  PLSSATRH-------LCAVASPEARTKKLERIADDLLKLNRIELYDYSLLFSHKIGLNRY 80

Query: 100 AFAPAAVVAAPGAAAGDAAAEAVEEKTEFDVVIEDVPSNARIAVIKAVRALTSLALKEAK 159
             A A   +   A+A      A  EKT FDV +E   + ++I VIK +RA T L LKEAK
Sbjct: 81  GSAVAVTGSVGDASASTETKTA--EKTTFDVKLEKFEAASKIKVIKEIRAFTDLGLKEAK 140

Query: 160 ELIEGLPKKFKEGISKEEAEDAKKQLEEAGAKIAI 191
            L+E  P   K G++KEEAE   ++L+  GA +A+
Sbjct: 141 ALVEKAPVIVKNGLTKEEAEKIMEKLKAVGAIVAL 166

[Close]
BLAST of Cp4.1LG01g23490 vs. NCBI nr
Match: gi|659117765|ref|XP_008458778.1| (PREDICTED: 50S ribosomal protein L12, chloroplastic-like [Cucumis melo])

HSP 1 Score: 260.0 bits (663), Expect = 3.3e-66
Identity = 161/192 (83.85%), Postives = 169/192 (88.02%), Query Frame = 1 

Query: 1   MASTLSTLTTLRSPTHLSYSHSSFSTQSSISTTLQFPFNPSSTATSHRATYLRPIAAVSA 60
           MAS+LSTL TL +P  LSYSHS FS  S  STTL FP+         RAT LRPIAAVSA
Sbjct: 1   MASSLSTL-TLNTPFPLSYSHSKFSPHSFRSTTLHFPY--------RRATLLRPIAAVSA 60

Query: 61  PEKIEKLGADISNLTLEEARILVDFLQDKLGVSAAAFAPAAVVAAP-GAAAGDAAAEAVE 120
           PEKIEKLG+DIS+LTLEEAR+LVDFLQDKLGVSAAAFAPAAVVAAP GA  GDAAAEAVE
Sbjct: 61  PEKIEKLGSDISSLTLEEARLLVDFLQDKLGVSAAAFAPAAVVAAPGGAVGGDAAAEAVE 120

Query: 121 EKTEFDVVIEDVPSNARIAVIKAVRALTSLALKEAKELIEGLPKKFKEGISKEEAEDAKK 180
           EKTEFDVVIEDVPSNARIAVIKAVRALTSLALKEAKELIEGLPKKFKEG+SKEEAEDAKK
Sbjct: 121 EKTEFDVVIEDVPSNARIAVIKAVRALTSLALKEAKELIEGLPKKFKEGVSKEEAEDAKK 180

Query: 181 QLEEAGAKIAIV 192
           QLE+AGAKIAIV
Sbjct: 181 QLEDAGAKIAIV 183

[Close]
BLAST of Cp4.1LG01g23490 vs. NCBI nr
Match: gi|449450097|ref|XP_004142800.1| (PREDICTED: 50S ribosomal protein L12, chloroplastic-like [Cucumis sativus])

HSP 1 Score: 255.4 bits (651), Expect = 8.0e-65
Identity = 157/192 (81.77%), Postives = 169/192 (88.02%), Query Frame = 1 

Query: 1   MASTLSTLTTLRSPTHLSYSHSSFSTQSSISTTLQFPFNPSSTATSHRATYLRPIAAVSA 60
           MAS+LSTLT L +P HL  SHSSFS  S   TTLQFP+         R T+LRPIAAVSA
Sbjct: 1   MASSLSTLT-LNTPLHLPRSHSSFSPLSFRPTTLQFPY--------RRPTHLRPIAAVSA 60

Query: 61  PEKIEKLGADISNLTLEEARILVDFLQDKLGVSAAAFAPAAVVAAP-GAAAGDAAAEAVE 120
           PEKIEKLG+DIS+LTLEEAR+LVDFLQDKLGVSAAAFAPAAVVAAP GA  G+AAAEAVE
Sbjct: 61  PEKIEKLGSDISSLTLEEARLLVDFLQDKLGVSAAAFAPAAVVAAPGGAVGGEAAAEAVE 120

Query: 121 EKTEFDVVIEDVPSNARIAVIKAVRALTSLALKEAKELIEGLPKKFKEGISKEEAEDAKK 180
           EKTEFDVVIEDVPSNARIAVIK+VRA+TSLALKEAKELIEGLPKKFKEG+SKEEA+DAKK
Sbjct: 121 EKTEFDVVIEDVPSNARIAVIKSVRAMTSLALKEAKELIEGLPKKFKEGVSKEEADDAKK 180

Query: 181 QLEEAGAKIAIV 192
           QLEEAGAKIAIV
Sbjct: 181 QLEEAGAKIAIV 183

[Close]
BLAST of Cp4.1LG01g23490 vs. NCBI nr
Match: gi|595966418|ref|XP_007217174.1| (hypothetical protein PRUPE_ppa011994mg [Prunus persica])

HSP 1 Score: 239.6 bits (610), Expect = 4.6e-60
Identity = 147/192 (76.56%), Postives = 168/192 (87.50%), Query Frame = 1 

Query: 1   MASTLSTLTTLRSPTHLSYSHSSFSTQSSISTTLQFPFNPSSTATSHRATYLRPIAAVSA 60
           MA++LSTLT L +P++L+   +S    ++  TTLQFPFNP + + +HRAT+LRP+AAV A
Sbjct: 1   MAASLSTLT-LGTPSYLNTPATSSFPPNTPKTTLQFPFNPQNPSLTHRATHLRPLAAVEA 60

Query: 61  PEKIEKLGADISNLTLEEARILVDFLQDKLGVSAAAFAPAAVVAA-PGAAAGDAAAEAVE 120
           PEKIEKLGADIS+LTLEEARILVDFLQDKLGVSAAA APAA VAA PGAA G A    VE
Sbjct: 61  PEKIEKLGADISSLTLEEARILVDFLQDKLGVSAAALAPAAAVAAAPGAAEGPAV---VE 120

Query: 121 EKTEFDVVIEDVPSNARIAVIKAVRALTSLALKEAKELIEGLPKKFKEGISKEEAEDAKK 180
           EKTEFDVVIE+VPSNARIAVIKAVRALTSLALKEAKELIEGLPKKF+EGISK+EA++AKK
Sbjct: 121 EKTEFDVVIEEVPSNARIAVIKAVRALTSLALKEAKELIEGLPKKFREGISKDEADEAKK 180

Query: 181 QLEEAGAKIAIV 192
           QLEEAGAK+AIV
Sbjct: 181 QLEEAGAKVAIV 188

[Close]
BLAST of Cp4.1LG01g23490 vs. NCBI nr
Match: gi|645249087|ref|XP_008230587.1| (PREDICTED: 50S ribosomal protein L12, chloroplastic-like [Prunus mume])

HSP 1 Score: 236.9 bits (603), Expect = 3.0e-59
Identity = 146/192 (76.04%), Postives = 167/192 (86.98%), Query Frame = 1 

Query: 1   MASTLSTLTTLRSPTHLSYSHSSFSTQSSISTTLQFPFNPSSTATSHRATYLRPIAAVSA 60
           MA++LSTLT L +P++L+   +S     +   TLQFPFNP + + +HRAT+LRP+AAV+A
Sbjct: 1   MAASLSTLT-LGTPSYLNTPATSSFPPHTPKPTLQFPFNPQNPSLTHRATHLRPLAAVAA 60

Query: 61  PEKIEKLGADISNLTLEEARILVDFLQDKLGVSAAAFAPAA-VVAAPGAAAGDAAAEAVE 120
           PEKIEKLGADIS+LTLEEARILVDFLQDKLGVSAAA APAA V AAPGAA G A    VE
Sbjct: 61  PEKIEKLGADISSLTLEEARILVDFLQDKLGVSAAALAPAAGVAAAPGAAEGPAV---VE 120

Query: 121 EKTEFDVVIEDVPSNARIAVIKAVRALTSLALKEAKELIEGLPKKFKEGISKEEAEDAKK 180
           EKTEFDVVIE+VPSNARIAVIKAVRALTSLALKEAKELIEGLPKKF+EGISK+EA++AKK
Sbjct: 121 EKTEFDVVIEEVPSNARIAVIKAVRALTSLALKEAKELIEGLPKKFREGISKDEADEAKK 180

Query: 181 QLEEAGAKIAIV 192
           QLEEAGAK+AIV
Sbjct: 181 QLEEAGAKVAIV 188

[Close]
BLAST of Cp4.1LG01g23490 vs. NCBI nr
Match: gi|657974806|ref|XP_008379238.1| (PREDICTED: 50S ribosomal protein L12, chloroplastic-like [Malus domestica])

HSP 1 Score: 231.1 bits (588), Expect = 1.6e-57
Identity = 144/192 (75.00%), Postives = 161/192 (83.85%), Query Frame = 1 

Query: 1   MASTLSTLTTLRSPTHLSYSHSSFSTQSSISTTLQFPFNPSSTATSHRATYLRPIAAVSA 60
           M +TLSTLT L +P++ + + +S     S   TLQFPFNP +   +HRAT++RP+AAV A
Sbjct: 1   MVATLSTLT-LGTPSYPAATSASSFPSHSPKPTLQFPFNPQNPTLTHRATHIRPLAAVGA 60

Query: 61  PEKIEKLGADISNLTLEEARILVDFLQDKLGVSAAAFAPAAVVA-APGAAAGDAAAEAVE 120
           PEKIEKLG DIS+LTLEEARILVD+LQDKLGVSAAA APAA VA APGAA G A    VE
Sbjct: 61  PEKIEKLGTDISSLTLEEARILVDYLQDKLGVSAAALAPAAAVAVAPGAAEGPAV---VE 120

Query: 121 EKTEFDVVIEDVPSNARIAVIKAVRALTSLALKEAKELIEGLPKKFKEGISKEEAEDAKK 180
           EKTEFDVVIEDVPSNARIAVIKAVRALTSLALKEAKELIEGLPKKF+EGISK+EAE+AKK
Sbjct: 121 EKTEFDVVIEDVPSNARIAVIKAVRALTSLALKEAKELIEGLPKKFREGISKDEAEEAKK 180

Query: 181 QLEEAGAKIAIV 192
           QLE AGAKI IV
Sbjct: 181 QLEAAGAKINIV 188

The following BLAST results are available for this feature:
BLAST of Cp4.1LG01g23490 vs. Swiss-Prot
Match NameE-valueIdentityDescription
RK12_NICSY1.6e-5269.4350S ribosomal protein L12, chloroplastic OS=Nicotiana sylvestris PE=2 SV=1[more]
RK12_TOBAC7.8e-5268.8850S ribosomal protein L12, chloroplastic OS=Nicotiana tabacum GN=RPL12 PE=1 SV=1[more]
RK12_SPIOL1.0e-5168.0450S ribosomal protein L12, chloroplastic OS=Spinacia oleracea GN=RPL12 PE=1 SV=2[more]
RK121_ARATH7.3e-5066.1550S ribosomal protein L12-1, chloroplastic OS=Arabidopsis thaliana GN=RPL12A PE=... [more]
RK123_ARATH2.1e-4967.0250S ribosomal protein L12-3, chloroplastic OS=Arabidopsis thaliana GN=RPL12C PE=... [more]
BLAST of Cp4.1LG01g23490 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KSG5_CUCSA5.6e-6581.77SocL12 (Chloroplast ribosomal protein) OS=Cucumis sativus GN=Csa_5G524750 PE=3 S... [more]
M5XA31_PRUPE3.2e-6076.56Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa011994mg PE=3 SV=1[more]
F6HUY7_VITVI2.8e-5677.08Putative uncharacterized protein OS=Vitis vinifera GN=VIT_14s0066g01110 PE=3 SV=... [more]
W9SPV7_9ROSA2.4e-5573.2050S ribosomal protein L12-1 OS=Morus notabilis GN=L484_020519 PE=3 SV=1[more]
A0A067L3E5_JATCU8.9e-5572.40Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23894 PE=3 SV=1[more]
BLAST of Cp4.1LG01g23490 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G27830.14.1e-5166.15 ribosomal protein L12-A[more]
AT3G27850.11.2e-5067.02 ribosomal protein L12-C[more]
AT3G27840.11.7e-4156.48 ribosomal protein L12-B[more]
AT4G36420.16.2e-1540.44 Ribosomal protein L12 family protein[more]
AT4G37660.16.0e-1035.48 Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein Cl... [more]
BLAST of Cp4.1LG01g23490 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659117765|ref|XP_008458778.1|3.3e-6683.85PREDICTED: 50S ribosomal protein L12, chloroplastic-like [Cucumis melo][more]
gi|449450097|ref|XP_004142800.1|8.0e-6581.77PREDICTED: 50S ribosomal protein L12, chloroplastic-like [Cucumis sativus][more]
gi|595966418|ref|XP_007217174.1|4.6e-6076.56hypothetical protein PRUPE_ppa011994mg [Prunus persica][more]
gi|645249087|ref|XP_008230587.1|3.0e-5976.04PREDICTED: 50S ribosomal protein L12, chloroplastic-like [Prunus mume][more]
gi|657974806|ref|XP_008379238.1|1.6e-5775.00PREDICTED: 50S ribosomal protein L12, chloroplastic-like [Malus domestica][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
GO:0005622intracellular
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
Vocabulary: INTERPRO
TermDefinition
IPR014719Ribosomal_L7/12_C/ClpS-like
IPR013823Ribosomal_L7/L12_C
IPR008932Ribosomal_L7/L12_oligo
IPR000206Ribosomal_L7/12
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0006412 translation
cellular_component GO:0005840 ribosome
cellular_component GO:0005622 intracellular
molecular_function GO:0003735 structural constituent of ribosome
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG01g23490.1Cp4.1LG01g23490.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000206Ribosomal protein L7/L12HAMAPMF_00368Ribosomal_L7_L12coord: 59..191
score: 22
IPR000206Ribosomal protein L7/L12TIGRFAMsTIGR00855TIGR00855coord: 63..190
score: 9.3
IPR008932Ribosomal protein L7/L12, oligomerisationPFAMPF16320Ribosomal_L12_Ncoord: 63..111
score: 1.8
IPR008932Ribosomal protein L7/L12, oligomerisationunknownSSF48300Ribosomal protein L7/12, oligomerisation (N-terminal) domaincoord: 63..126
score: 5.36
IPR013823Ribosomal protein L7/L12, C-terminalPRODOMPD001326coord: 125..190
score: 8.0
IPR013823Ribosomal protein L7/L12, C-terminalPFAMPF00542Ribosomal_L12coord: 124..190
score: 6.3
IPR014719Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-likeGENE3DG3DSA:3.30.1390.10coord: 117..190
score: 6.6
IPR014719Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-likeunknownSSF54736ClpS-likecoord: 119..190
score: 3.49

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG01g23490Cucsa.339760Cucumber (Gy14) v1cgycpeB0883
Cp4.1LG01g23490CmaCh11G014340Cucurbita maxima (Rimu)cmacpeB137
Cp4.1LG01g23490CmaCh14G006550Cucurbita maxima (Rimu)cmacpeB277
Cp4.1LG01g23490CmaCh15G003440Cucurbita maxima (Rimu)cmacpeB317
Cp4.1LG01g23490CmoCh14G006710Cucurbita moschata (Rifu)cmocpeB239
Cp4.1LG01g23490CmoCh11G016860Cucurbita moschata (Rifu)cmocpeB113
Cp4.1LG01g23490CmoCh15G003540Cucurbita moschata (Rifu)cmocpeB279
Cp4.1LG01g23490Cla017099Watermelon (97103) v1cpewmB384
Cp4.1LG01g23490Cla010411Watermelon (97103) v1cpewmB381
Cp4.1LG01g23490Csa3G837570Cucumber (Chinese Long) v2cpecuB396
Cp4.1LG01g23490Csa5G524750Cucumber (Chinese Long) v2cpecuB417
Cp4.1LG01g23490MELO3C009965Melon (DHL92) v3.5.1cpemeB406
Cp4.1LG01g23490MELO3C021553Melon (DHL92) v3.5.1cpemeB358
Cp4.1LG01g23490ClCG09G019050Watermelon (Charleston Gray)cpewcgB344
Cp4.1LG01g23490ClCG10G014140Watermelon (Charleston Gray)cpewcgB346
Cp4.1LG01g23490CSPI05G18400Wild cucumber (PI 183967)cpecpiB416
Cp4.1LG01g23490CSPI03G40020Wild cucumber (PI 183967)cpecpiB395
Cp4.1LG01g23490Lsi03G013800Bottle gourd (USVL1VR-Ls)cpelsiB342
Cp4.1LG01g23490Lsi02G015730Bottle gourd (USVL1VR-Ls)cpelsiB336
Cp4.1LG01g23490MELO3C009965.2Melon (DHL92) v3.6.1cpemedB473
Cp4.1LG01g23490MELO3C021553.2Melon (DHL92) v3.6.1cpemedB418
Cp4.1LG01g23490CsaV3_3G042510Cucumber (Chinese Long) v3cpecucB0493
Cp4.1LG01g23490Bhi06G000438Wax gourdcpewgoB0502
Cp4.1LG01g23490Bhi11G001389Wax gourdcpewgoB0479
Cp4.1LG01g23490CsGy3G037500Cucumber (Gy14) v2cgybcpeB371
Cp4.1LG01g23490Carg04441Silver-seed gourdcarcpeB0965
Cp4.1LG01g23490Carg15624Silver-seed gourdcarcpeB0517
Cp4.1LG01g23490Carg09724Silver-seed gourdcarcpeB0611
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Cp4.1LG01g23490Cp4.1LG13g08960Cucurbita pepo (Zucchini)cpecpeB199
Cp4.1LG01g23490Cp4.1LG03g07490Cucurbita pepo (Zucchini)cpecpeB396
Cp4.1LG01g23490Cp4.1LG04g05340Cucurbita pepo (Zucchini)cpecpeB398
The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG01g23490Cucurbita pepo (Zucchini)cpecpeB347
Cp4.1LG01g23490Cucumber (Gy14) v1cgycpeB0522
Cp4.1LG01g23490Cucurbita maxima (Rimu)cmacpeB721
Cp4.1LG01g23490Cucurbita moschata (Rifu)cmocpeB673
Cp4.1LG01g23490Cucumber (Gy14) v2cgybcpeB062
Cp4.1LG01g23490Cucumber (Gy14) v2cgybcpeB064
Cp4.1LG01g23490Cucumber (Gy14) v2cgybcpeB627
Cp4.1LG01g23490Melon (DHL92) v3.6.1cpemedB452
Cp4.1LG01g23490Silver-seed gourdcarcpeB0374
Cp4.1LG01g23490Silver-seed gourdcarcpeB0509
Cp4.1LG01g23490Cucumber (Chinese Long) v3cpecucB0473
Cp4.1LG01g23490Cucumber (Chinese Long) v3cpecucB0475
Cp4.1LG01g23490Cucumber (Chinese Long) v3cpecucB0519
Cp4.1LG01g23490Wax gourdcpewgoB0573