Cp4.1LG01g23470 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG01g23470
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionADP-ribosylation factor
LocationCp4.1LG01 : 19651047 .. 19653782 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATGGGAAATTTAGAAATTACTGATCTGCATGTTTCTTCTTTTGGTCTTAATATTATACCGAATGGAAACTGGGTGATGCTGTATCTGTTATCTTTTCTTTTTCTCTACATATCCCCCTGCCACCCAATCGTTTATTTTTTCAGTTTTAGCCTCTTATTGATGTAGAATTCTCTTTCGTTGTTGTAATATTTAAAGCATTTCTCTTATCACCCTCCCCCAAAGAAATGGAAAATTTCTGTTTTTAGCTTTATACATAATTTGTGGGCATCTGCCAAACTTATAGAAAATATACGCTGAGTTCCCAACTAATCTGCTTTCAGGATGAACTGAGAGATGCTGTGTTGCTCGTATTTGCCAACAAGCAAGATCTTCCTAATGCGATGAATGCTGCAGAAATTACCGACAAGCTTGGTCTTCATTCACTCCGTCAACGACACTGGTAAAATACTTTTATTATTGTTTGTTTCTTTATTTATTATTTCTTCTGAAGCTTTGTTTTATTTCTGCATATGATTTTTTTTTTTATTCAATTATGTGTTTCACGGGCTCAATTTTTTAAATATTCCAGAACCTATTACCTATGCTTACTGTTGTGCATAGATTGGATTAAAGAGACTGATCGGGGGTGCTTCTATTTTGTTTTCTAACCAAAGCCAATGTGACTCAGTATCATCTGTTCACTAGTTTGCTTCATGTTTTGAAATTTGGCTTGTCTGCTCCTACTCCGAGCAGCATTATCACTTTACTTTCTTTTTAGAGAACATCTGTTTAAAGATGGAACTAGATTCTTTGACCAAACTTGATATGAGCTTTTCATTTGGCTTTTTGGAATGTAAGAAGGGCAGAGAGGGCTTGCATGGATGAAGCTCTCCTTCCTTTTCATTCTTCTTTTTAGGTTCATCTAGAATTTCATCAGCTTTTATATACACTTGTATTCTAGTTCGTTTCTCACAAATGTTTCATGTGTGATTAGGTTAGGAAAGATATACATTAGCTCCAGAAATCCTCCAACCTCATAAGCATCCTCAGTTTTAGAATATAAAGTCCAATTGCTAGCAACTTTAGTCTCGATTACTTTCAACTTTGAACTACCCATTCTTTCTAAATATTGTCTAGAAGACAGCTCCCTTTTTGGATGTGGGAGACTGAACTTGTAGGCGAGTGTGTGTGTGTGTTGCCCATAGTTTATACTTTCATTTTCTTTATGGAAGTATGGTCTTTTGAAAAATTTGTCCACAATGTTGACTTAGGAACTTTCTACCTCAGAAGTTGCTAAATGTGCATGGATGTGCCATCAAAATTCTACTTTTGAGTGTACTTTTGATGAGAGTATTTTAAGGGAGAAGGATTGTACTATAGAAATGGGTAGAGAAGTTTCCATATCAACCTATTTAAATTTCATTTTACGAACGTTTGACAATTTCTCAACTGGAAATGAAGTGATTGAAGACTATAAATTACACTCAAAAGAAGTGGTTTGAGCAGCTGTGCTAATATTTAAATTAACACTTCATTTCAGGTACATCCAGAGCACGTGTGCAACATCTGGAGAGGGTCTATACGAGGGTTTAGACTGGCTTTCCAACAATATTGCTAGCAAGGTAAGCACAAAAGTCTGTTGACATGATCTGAAATCTCATTTTTCCACATTTTAGTTTAAATTTTTTCTTCATGTTTGAATAGTAGAAACTGCGTATTTACTTTGAAAATCACAAAAAACATTTCCACTTGGCCGGATGAATTTGAGACTAATCCGAAAAAGGGATAAAACACTTGCAGTAAAGGGATAACACACTTACACCACCAATAAAGACTGTTAAAAGAACCAAATCTTGTAATCCGTTTTGCTTTGAGAGCTCTATCTCTCCCTCTCTTTTGTTTATTTCATTTTATCAATGAAATCTGTGCTGCAATACTCACTTGGAAGATCATTTGTAAATCTGGAAGCCTCCCTTCTTTTTACAGGCATGAAGCGGTTGAGGCTCTTGAATGTCAGACTGAGCTGTGGGTGAAGTTTGGCGATGATAGGGGTATGGTTCACTTTTCTCAAGAAGTGTCATTAGCAGCAGAACAGTTTGAAACTTCTATATGTATTTTCTATTTGTATACTTGTGACTTGATCTAAAATGATCAAAACCATGTTATAGTTTCTCTGAGAAGTCAACCTTGTTATAATTTTCTTTGTGATCATATTATTTTGCCTTTTGAGATCTCCTTTGTCTTTCTACTTGGCTATGGAGTTCAGTCGGACAATCTCATCTGGATCATTAATCGCCTCTGCAAAATGTTTTGCTAGGCTGGTTGGCGGCTATCTGATGCTGGCCTATTGACCCTCAACTCATCCCTCTCCTTAAAATTGGTGAAGTTTTAAAATCAAGTGAAAAATGGTTATCTTATGGGTTTGCTTTCAACTCATCCCATTTTGATCTTGTTGCCAATGCTCTCTTATCTTTTAACATAAGATCACTTTCTTTTCGGCTCATGGAAAGATAGCCACCACACACATTGGATATAGGAAGTTGAACCCTTGAACCTTGAGACATTTACAAACCAGAACACAGGTTTCCTTTGCTTTTGAATACTATTTCCTTCATTTAACTACAGCCATATATGCCTAGGGAGCTTCATGATTTAGTAGATTTTGTACAAAACATATTAGAATATCGTCTACTTTTTAGACTACAGATGAGGACGTTGTCTTTATTCATCCCCGTGTAGTTTATACTTTTGTGT

mRNA sequence

ATGATGGGAAATTTAGAAATTACTGATCTGCATGTTTCTTCTTTTGGTCTTAATATTATACCGAATGGAAACTGGGATGAACTGAGAGATGCTGTGTTGCTCGTATTTGCCAACAAGCAAGATCTTCCTAATGCGATGAATGCTGCAGAAATTACCGACAAGCTTGGTCTTCATTCACTCCGTCAACGACACTGGCATGAAGCGGTTGAGGCTCTTGAATGTCAGACTGAGCTGTGGGTGAAGTTTGGCGATGATAGGGGTATGGTTCACTTTTCTCAAGAAGTGTCATTAGCAGCAGAACAGTTTGAAACTTCTATATGTATTTTCTATTTGTATACTTGTGACTTGATCTAAAATGATCAAAACCATGTTATAGTTTCTCTGAGAAGTCAACCTTGTTATAATTTTCTTTGTGATCATATTATTTTGCCTTTTGAGATCTCCTTTGTCTTTCTACTTGGCTATGGAGTTCAGTCGGACAATCTCATCTGGATCATTAATCGCCTCTGCAAAATGTTTTGCTAGGCTGGTTGGCGGCTATCTGATGCTGGCCTATTGACCCTCAACTCATCCCTCTCCTTAAAATTGGTGAAGTTTTAAAATCAAGTGAAAAATGGTTATCTTATGGGTTTGCTTTCAACTCATCCCATTTTGATCTTGTTGCCAATGCTCTCTTATCTTTTAACATAAGATCACTTTCTTTTCGGCTCATGGAAAGATAGCCACCACACACATTGGATATAGGAAGTTGAACCCTTGAACCTTGAGACATTTACAAACCAGAACACAGGTTTCCTTTGCTTTTGAATACTATTTCCTTCATTTAACTACAGCCATATATGCCTAGGGAGCTTCATGATTTAGTAGATTTTGTACAAAACATATTAGAATATCGTCTACTTTTTAGACTACAGATGAGGACGTTGTCTTTATTCATCCCCGTGTAGTTTATACTTTTGTGT

Coding sequence (CDS)

ATGATGGGAAATTTAGAAATTACTGATCTGCATGTTTCTTCTTTTGGTCTTAATATTATACCGAATGGAAACTGGGATGAACTGAGAGATGCTGTGTTGCTCGTATTTGCCAACAAGCAAGATCTTCCTAATGCGATGAATGCTGCAGAAATTACCGACAAGCTTGGTCTTCATTCACTCCGTCAACGACACTGGCATGAAGCGGTTGAGGCTCTTGAATGTCAGACTGAGCTGTGGGTGAAGTTTGGCGATGATAGGGGTATGGTTCACTTTTCTCAAGAAGTGTCATTAGCAGCAGAACAGTTTGAAACTTCTATATGTATTTTCTATTTGTATACTTGTGACTTGATCTAA

Protein sequence

MMGNLEITDLHVSSFGLNIIPNGNWDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWHEAVEALECQTELWVKFGDDRGMVHFSQEVSLAAEQFETSICIFYLYTCDLI
Homology
[Close]
BLAST of Cp4.1LG01g23470 vs. Swiss-Prot
Match: ARF1_SALBA (ADP-ribosylation factor 1 OS=Salix bakko GN=ARF1 PE=2 SV=3)

HSP 1 Score: 87.4 bits (215), Expect = 1.1e-16
Identity = 41/43 (95.35%), Postives = 42/43 (97.67%), Query Frame = 1 

Query: 24  NWDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWH 67
           N DELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHW+
Sbjct: 112 NEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWY 154

[Close]
BLAST of Cp4.1LG01g23470 vs. Swiss-Prot
Match: ARF_VIGUN (ADP-ribosylation factor OS=Vigna unguiculata GN=ARF PE=2 SV=3)

HSP 1 Score: 87.4 bits (215), Expect = 1.1e-16
Identity = 41/43 (95.35%), Postives = 42/43 (97.67%), Query Frame = 1 

Query: 24  NWDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWH 67
           N DELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHW+
Sbjct: 112 NEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWY 154

[Close]
BLAST of Cp4.1LG01g23470 vs. Swiss-Prot
Match: ARF1_CHLRE (ADP-ribosylation factor 1 OS=Chlamydomonas reinhardtii GN=ARF1 PE=2 SV=2)

HSP 1 Score: 87.4 bits (215), Expect = 1.1e-16
Identity = 41/43 (95.35%), Postives = 42/43 (97.67%), Query Frame = 1 

Query: 24  NWDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWH 67
           N DELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHW+
Sbjct: 112 NEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWY 154

[Close]
BLAST of Cp4.1LG01g23470 vs. Swiss-Prot
Match: ARF2_ORYSJ (ADP-ribosylation factor 2 OS=Oryza sativa subsp. japonica GN=ARF PE=2 SV=2)

HSP 1 Score: 87.4 bits (215), Expect = 1.1e-16
Identity = 41/43 (95.35%), Postives = 42/43 (97.67%), Query Frame = 1 

Query: 24  NWDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWH 67
           N DELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHW+
Sbjct: 112 NEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWY 154

[Close]
BLAST of Cp4.1LG01g23470 vs. Swiss-Prot
Match: ARF1_ORYSJ (ADP-ribosylation factor 1 OS=Oryza sativa subsp. japonica GN=Os01g0813400 PE=2 SV=3)

HSP 1 Score: 87.4 bits (215), Expect = 1.1e-16
Identity = 41/43 (95.35%), Postives = 42/43 (97.67%), Query Frame = 1 

Query: 24  NWDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWH 67
           N DELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHW+
Sbjct: 112 NEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWY 154

[Close]
BLAST of Cp4.1LG01g23470 vs. TrEMBL
Match: A0A103Y4X2_CYNCS (Small GTPase superfamily, ARF/SAR type OS=Cynara cardunculus var. scolymus GN=Ccrd_019226 PE=3 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 1.3e-16
Identity = 43/52 (82.69%), Postives = 46/52 (88.46%), Query Frame = 1 

Query: 24  NWDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWHEAVEALECQ 76
           N DELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWH++     C+
Sbjct: 112 NEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWHKSTSGFGCR 163

[Close]
BLAST of Cp4.1LG01g23470 vs. TrEMBL
Match: A0A118JWZ7_CYNCS (Uncharacterized protein (Fragment) OS=Cynara cardunculus var. scolymus GN=Ccrd_002296 PE=3 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 1.3e-16
Identity = 46/59 (77.97%), Postives = 49/59 (83.05%), Query Frame = 1 

Query: 24  NWDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWHEAVEALECQTELWVKF 83
           N DELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWHE +     + +L  KF
Sbjct: 157 NEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWHEEMIDFVGRVDLGCKF 215

[Close]
BLAST of Cp4.1LG01g23470 vs. TrEMBL
Match: B7FKH3_MEDTR (Putative uncharacterized protein OS=Medicago truncatula PE=2 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 3.2e-15
Identity = 44/60 (73.33%), Postives = 47/60 (78.33%), Query Frame = 1 

Query: 24  NWDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWHEAVEALECQTELWVKFG 83
           N DELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHW+           L+ +FG
Sbjct: 112 NEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYERFG 171

[Close]
BLAST of Cp4.1LG01g23470 vs. TrEMBL
Match: A0A0E0N3Z4_ORYRU (Uncharacterized protein OS=Oryza rufipogon PE=3 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 3.2e-15
Identity = 43/50 (86.00%), Postives = 45/50 (90.00%), Query Frame = 1 

Query: 17  LNIIPNGNWDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWH 67
           LN + N   DELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHW+
Sbjct: 111 LNELQNWKKDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWY 160

[Close]
BLAST of Cp4.1LG01g23470 vs. TrEMBL
Match: A0A0B0NWQ3_GOSAR (ARF2-B: ADP-ribosylation factor 2-B OS=Gossypium arboreum GN=F383_20717 PE=3 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 4.2e-15
Identity = 43/46 (93.48%), Postives = 43/46 (93.48%), Query Frame = 1 

Query: 24  NWDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWHEAV 70
           N DELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHW E V
Sbjct: 128 NEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWLEVV 173

[Close]
BLAST of Cp4.1LG01g23470 vs. TAIR10
Match: AT5G14670.1 (AT5G14670.1 ADP-ribosylation factor A1B)

HSP 1 Score: 87.4 bits (215), Expect = 6.2e-18
Identity = 41/43 (95.35%), Postives = 42/43 (97.67%), Query Frame = 1 

Query: 24  NWDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWH 67
           N DELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHW+
Sbjct: 112 NEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWY 154

[Close]
BLAST of Cp4.1LG01g23470 vs. TAIR10
Match: AT3G62290.1 (AT3G62290.1 ADP-ribosylation factor A1E)

HSP 1 Score: 87.4 bits (215), Expect = 6.2e-18
Identity = 41/43 (95.35%), Postives = 42/43 (97.67%), Query Frame = 1 

Query: 24  NWDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWH 67
           N DELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHW+
Sbjct: 112 NEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWY 154

[Close]
BLAST of Cp4.1LG01g23470 vs. TAIR10
Match: AT2G47170.1 (AT2G47170.1 Ras-related small GTP-binding family protein)

HSP 1 Score: 87.4 bits (215), Expect = 6.2e-18
Identity = 41/43 (95.35%), Postives = 42/43 (97.67%), Query Frame = 1 

Query: 24  NWDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWH 67
           N DELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHW+
Sbjct: 112 NEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWY 154

[Close]
BLAST of Cp4.1LG01g23470 vs. TAIR10
Match: AT1G10630.1 (AT1G10630.1 ADP-ribosylation factor A1F)

HSP 1 Score: 87.4 bits (215), Expect = 6.2e-18
Identity = 41/43 (95.35%), Postives = 42/43 (97.67%), Query Frame = 1 

Query: 24  NWDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWH 67
           N DELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHW+
Sbjct: 112 NEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWY 154

[Close]
BLAST of Cp4.1LG01g23470 vs. TAIR10
Match: AT1G70490.1 (AT1G70490.1 Ras-related small GTP-binding family protein)

HSP 1 Score: 87.4 bits (215), Expect = 6.2e-18
Identity = 41/43 (95.35%), Postives = 42/43 (97.67%), Query Frame = 1 

Query: 24  NWDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWH 67
           N DELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHW+
Sbjct: 112 NEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWY 154

[Close]
BLAST of Cp4.1LG01g23470 vs. NCBI nr
Match: gi|976908370|gb|KVH95591.1| (hypothetical protein Ccrd_002296, partial [Cynara cardunculus var. scolymus])

HSP 1 Score: 94.0 bits (232), Expect = 1.9e-16
Identity = 46/59 (77.97%), Postives = 49/59 (83.05%), Query Frame = 1 

Query: 24  NWDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWHEAVEALECQTELWVKF 83
           N DELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWHE +     + +L  KF
Sbjct: 157 NEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWHEEMIDFVGRVDLGCKF 215

[Close]
BLAST of Cp4.1LG01g23470 vs. NCBI nr
Match: gi|976917066|gb|KVI02559.1| (Small GTPase superfamily, ARF/SAR type [Cynara cardunculus var. scolymus])

HSP 1 Score: 94.0 bits (232), Expect = 1.9e-16
Identity = 43/52 (82.69%), Postives = 46/52 (88.46%), Query Frame = 1 

Query: 24  NWDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWHEAVEALECQ 76
           N DELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWH++     C+
Sbjct: 112 NEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWHKSTSGFGCR 163

[Close]
BLAST of Cp4.1LG01g23470 vs. NCBI nr
Match: gi|217073794|gb|ACJ85257.1| (unknown [Medicago truncatula])

HSP 1 Score: 89.4 bits (220), Expect = 4.7e-15
Identity = 44/60 (73.33%), Postives = 47/60 (78.33%), Query Frame = 1 

Query: 24  NWDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWHEAVEALECQTELWVKFG 83
           N DELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHW+           L+ +FG
Sbjct: 112 NEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYERFG 171

[Close]
BLAST of Cp4.1LG01g23470 vs. NCBI nr
Match: gi|700207171|gb|KGN62290.1| (hypothetical protein Csa_2G348280 [Cucumis sativus])

HSP 1 Score: 89.0 bits (219), Expect = 6.1e-15
Identity = 44/63 (69.84%), Postives = 50/63 (79.37%), Query Frame = 1 

Query: 4   NLEITDLHVSSFGLNIIPNGNWDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQR 63
           N+E  +    SF +  +   + DELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQR
Sbjct: 151 NVETVEYKNISFTVWDVGGQDKDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQR 210

Query: 64  HWH 67
           HW+
Sbjct: 211 HWY 213

[Close]
BLAST of Cp4.1LG01g23470 vs. NCBI nr
Match: gi|728837644|gb|KHG17087.1| (ARF2-B: ADP-ribosylation factor 2-B [Gossypium arboreum])

HSP 1 Score: 89.0 bits (219), Expect = 6.1e-15
Identity = 43/46 (93.48%), Postives = 43/46 (93.48%), Query Frame = 1 

Query: 24  NWDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWHEAV 70
           N DELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHW E V
Sbjct: 128 NEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWLEVV 173

The following BLAST results are available for this feature:
BLAST of Cp4.1LG01g23470 vs. Swiss-Prot
Match NameE-valueIdentityDescription
ARF1_SALBA1.1e-1695.35ADP-ribosylation factor 1 OS=Salix bakko GN=ARF1 PE=2 SV=3[more]
ARF_VIGUN1.1e-1695.35ADP-ribosylation factor OS=Vigna unguiculata GN=ARF PE=2 SV=3[more]
ARF1_CHLRE1.1e-1695.35ADP-ribosylation factor 1 OS=Chlamydomonas reinhardtii GN=ARF1 PE=2 SV=2[more]
ARF2_ORYSJ1.1e-1695.35ADP-ribosylation factor 2 OS=Oryza sativa subsp. japonica GN=ARF PE=2 SV=2[more]
ARF1_ORYSJ1.1e-1695.35ADP-ribosylation factor 1 OS=Oryza sativa subsp. japonica GN=Os01g0813400 PE=2 S... [more]
BLAST of Cp4.1LG01g23470 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A103Y4X2_CYNCS1.3e-1682.69Small GTPase superfamily, ARF/SAR type OS=Cynara cardunculus var. scolymus GN=Cc... [more]
A0A118JWZ7_CYNCS1.3e-1677.97Uncharacterized protein (Fragment) OS=Cynara cardunculus var. scolymus GN=Ccrd_0... [more]
B7FKH3_MEDTR3.2e-1573.33Putative uncharacterized protein OS=Medicago truncatula PE=2 SV=1[more]
A0A0E0N3Z4_ORYRU3.2e-1586.00Uncharacterized protein OS=Oryza rufipogon PE=3 SV=1[more]
A0A0B0NWQ3_GOSAR4.2e-1593.48ARF2-B: ADP-ribosylation factor 2-B OS=Gossypium arboreum GN=F383_20717 PE=3 SV=... [more]
BLAST of Cp4.1LG01g23470 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G14670.16.2e-1895.35 ADP-ribosylation factor A1B[more]
AT3G62290.16.2e-1895.35 ADP-ribosylation factor A1E[more]
AT2G47170.16.2e-1895.35 Ras-related small GTP-binding family protein[more]
AT1G10630.16.2e-1895.35 ADP-ribosylation factor A1F[more]
AT1G70490.16.2e-1895.35 Ras-related small GTP-binding family protein[more]
BLAST of Cp4.1LG01g23470 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|976908370|gb|KVH95591.1|1.9e-1677.97hypothetical protein Ccrd_002296, partial [Cynara cardunculus var. scolymus][more]
gi|976917066|gb|KVI02559.1|1.9e-1682.69Small GTPase superfamily, ARF/SAR type [Cynara cardunculus var. scolymus][more]
gi|217073794|gb|ACJ85257.1|4.7e-1573.33unknown [Medicago truncatula][more]
gi|700207171|gb|KGN62290.1|6.1e-1569.84hypothetical protein Csa_2G348280 [Cucumis sativus][more]
gi|728837644|gb|KHG17087.1|6.1e-1593.48ARF2-B: ADP-ribosylation factor 2-B [Gossypium arboreum][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005525GTP binding
Vocabulary: INTERPRO
TermDefinition
IPR027417P-loop_NTPase
IPR006689Small_GTPase_ARF/SAR
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006886 intracellular protein transport
biological_process GO:0006499 N-terminal protein myristoylation
biological_process GO:0043085 positive regulation of catalytic activity
biological_process GO:0007264 small GTPase mediated signal transduction
biological_process GO:0008150 biological_process
cellular_component GO:0005794 Golgi apparatus
cellular_component GO:0005575 cellular_component
molecular_function GO:0005525 GTP binding
molecular_function GO:0016787 hydrolase activity
molecular_function GO:0016004 phospholipase activator activity
molecular_function GO:0005215 transporter activity
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG01g23470.1Cp4.1LG01g23470.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006689Small GTPase superfamily, ARF/SAR typePFAMPF00025Arfcoord: 26..66
score: 1.8
IPR027417P-loop containing nucleoside triphosphate hydrolaseGENE3DG3DSA:3.40.50.300coord: 25..70
score: 3.
IPR027417P-loop containing nucleoside triphosphate hydrolaseunknownSSF52540P-loop containing nucleoside triphosphate hydrolasescoord: 26..66
score: 3.4
NoneNo IPR availablePANTHERPTHR11711ADP RIBOSYLATION FACTOR-RELATEDcoord: 24..65
score: 3.3
NoneNo IPR availablePANTHERPTHR11711:SF181ADP-RIBOSYLATION FACTOR A1Fcoord: 24..65
score: 3.3

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG01g23470CmoCh04G028280Cucurbita moschata (Rifu)cmocpeB673
Cp4.1LG01g23470ClCG09G019090Watermelon (Charleston Gray)cpewcgB344
Cp4.1LG01g23470ClCG10G014110Watermelon (Charleston Gray)cpewcgB346
Cp4.1LG01g23470MELO3C009969.2Melon (DHL92) v3.6.1cpemedB473
Cp4.1LG01g23470MELO3C021556.2Melon (DHL92) v3.6.1cpemedB418
Cp4.1LG01g23470CsaV3_3G042530Cucumber (Chinese Long) v3cpecucB0493
Cp4.1LG01g23470CsaV3_5G027290Cucumber (Chinese Long) v3cpecucB0519
Cp4.1LG01g23470Bhi07G001389Wax gourdcpewgoB0573
Cp4.1LG01g23470Bhi11G001382Wax gourdcpewgoB0479
Cp4.1LG01g23470Bhi06G000441Wax gourdcpewgoB0502
Cp4.1LG01g23470CsGy3G037540Cucumber (Gy14) v2cgybcpeB371
Cp4.1LG01g23470CsGy5G018000Cucumber (Gy14) v2cgybcpeB627
Cp4.1LG01g23470Carg04445Silver-seed gourdcarcpeB0965
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Cp4.1LG01g23470Cp4.1LG03g07370Cucurbita pepo (Zucchini)cpecpeB396
The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG01g23470Wild cucumber (PI 183967)cpecpiB395
Cp4.1LG01g23470Cucurbita pepo (Zucchini)cpecpeB199
Cp4.1LG01g23470Cucurbita pepo (Zucchini)cpecpeB347
Cp4.1LG01g23470Cucurbita pepo (Zucchini)cpecpeB398
Cp4.1LG01g23470Cucumber (Gy14) v1cgycpeB0522
Cp4.1LG01g23470Cucumber (Gy14) v1cgycpeB0883
Cp4.1LG01g23470Cucurbita maxima (Rimu)cmacpeB137
Cp4.1LG01g23470Cucurbita maxima (Rimu)cmacpeB277
Cp4.1LG01g23470Cucurbita maxima (Rimu)cmacpeB317
Cp4.1LG01g23470Cucurbita maxima (Rimu)cmacpeB721
Cp4.1LG01g23470Cucurbita moschata (Rifu)cmocpeB113
Cp4.1LG01g23470Cucurbita moschata (Rifu)cmocpeB239
Cp4.1LG01g23470Cucurbita moschata (Rifu)cmocpeB279
Cp4.1LG01g23470Wild cucumber (PI 183967)cpecpiB416
Cp4.1LG01g23470Cucumber (Chinese Long) v2cpecuB396
Cp4.1LG01g23470Cucumber (Chinese Long) v2cpecuB417
Cp4.1LG01g23470Bottle gourd (USVL1VR-Ls)cpelsiB336
Cp4.1LG01g23470Bottle gourd (USVL1VR-Ls)cpelsiB342
Cp4.1LG01g23470Watermelon (97103) v1cpewmB381
Cp4.1LG01g23470Watermelon (97103) v1cpewmB384
Cp4.1LG01g23470Melon (DHL92) v3.5.1cpemeB358
Cp4.1LG01g23470Melon (DHL92) v3.5.1cpemeB406
Cp4.1LG01g23470Cucumber (Gy14) v2cgybcpeB062
Cp4.1LG01g23470Cucumber (Gy14) v2cgybcpeB064
Cp4.1LG01g23470Melon (DHL92) v3.6.1cpemedB452
Cp4.1LG01g23470Silver-seed gourdcarcpeB0374
Cp4.1LG01g23470Silver-seed gourdcarcpeB0509
Cp4.1LG01g23470Silver-seed gourdcarcpeB0517
Cp4.1LG01g23470Silver-seed gourdcarcpeB0611
Cp4.1LG01g23470Cucumber (Chinese Long) v3cpecucB0473
Cp4.1LG01g23470Cucumber (Chinese Long) v3cpecucB0475