Cp4.1LG01g22870 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG01g22870
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionRNA recognition motif-containing family protein
LocationCp4.1LG01 : 19932546 .. 19935512 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CTCAGAGCTACAGAGTTAGATGATGCGGGATTCTCTGCCAACAGAAAAACTCCCAAACGGAGAAGATAAGACTTCATTCCACGCCACGCTCCTTCCACCACAATATTCCACACTCCCCAATCCCAATAATTCGTGATTCACACGCGCCCTTCATGCAACTGGAATCGGTTCATCACAAAGTTCAGTACCATCAGCTACCAAAACTGATGCCAAAAAAAAAAAAAAAAAAAAAAAAAAATGTCGGCTAAGTTTTCAGATTTCAGATTTCAGCTCGGCCCCCTCTCGTCTTCTTCTCTCAGAGCTTCTATCAGGTACGCCATAGCCAAACTTCAAACCCTTTTTACTTTTCTGTCGGTTTCCATACTGATTTTCATCATTTATCTCCTCCTTCCATTGTTTTGGCTTATGGGTTTGTTTTAGGTTTTCATTTCAAGATCTGGGTTGTGTCTGTGGATTAACTTTGGCAAAATTCCTCTAATTTTTCATCTTTTTTTGTTGAATTCGAGCTGTTCTTCCTTGTAATTTACCCTGTTTTAGTTACCCCTTTGCTAAACAATTCTGGGACTTCCATATAGAGCTGGGTGGAACAATGTACTCTGGGGGCTATACTGCTGAAGTTACAAGTTTGTCACCTAAAGCCACAGAGAATGATGTTTATGATTTTTTCTCCCATTGTGGCGCGGTGGATCATGTAGAAATCCTCAGGTGAATTCAACATTAATTGAAACTGGGTTTGCTAATCAAAAGCTTTGAAACAATTTTTTTCTTTTGCAATAACAGGTCGGGTGATTATGCGTGTACTGCTTATGTGACTTTCCGTGATGCTTTTGCTCTGGAAACTGCTATATTGCTTAGTGTAAGTTCTTGAGTGTGAGAATTCTCTGTGCTCTTTCATTTTGCAATTGTTGGTTTCTCTGCTTTTTACTTTGTTGTTCATAGATATGTGTAGAGTGCTCATCTACTGGTTCGCTCGCTTGAATTTGTTTCGCCGATGTATGTAAACGCGCAAATACACTCTTTAGGGTGTGCGGAGGAGGAGGAGCCATTTTGTATACGTTGTCATATGGGGTTGTTAGGCATACGTTTGTCGAGTCACCGTCTGGTTAGAGATGCTTACGAATTTATTTGAATCAAATATAGATATAAGACCTTAAGCTTTCATTTTTGGATTGGGAACGAAACATTCCTTATAAGGCTGTGGAAACCTCTCCCTAATAGACGCGTTTTAAACCTATGAAGTTGTCAGTGATTTGTAATGGGACAAAGTGGACAATATCTATTAGCTGTGGACTTAGACTGTTACTAATGGTATTAGAGCCAGACACGGGGCGGTGTTAGAGCGAGGAGGCTGGGCGAAGCATTTCTTATAAGGGTGTGGAAATCTCTCCCTAATAGATGCATTTTAGAACTGTGAGGCTGTCGGCGATATGTAATGGATCAAAGCGGACAATATCTACTTGTAGAAAGTTTTTAGTAGTTGCTTCTTTGTTTGTTTCTTTTTCAACACATTTAAGGAGAGTTGATTACTCAATGTGCAATCACTTAAATTTGCAAGAATTTGTGGGGGTAATCGCCCAAATATACTGCAAGCGGATTTTATCCTCTTTGGGCTTTTCTTCTTGGGCTTTCCCTCAAAGTTTTAAAACACGTCTACTAGGGGAGGTTTCCACAACTTTCTTCAGGGCTCACTACGGGTAGATATTGTCCTCTTTGGGCTTTGCCTCAAGGTTTTAAAACGTGTCCGCTAGTGAGAGCTTTTCACACCCTTGTAAAGAATGTTTCCTTGTGGGGATCTCACAGAATCATTTAAATTATTCCGTTTAGACTTTCAAGCACTCTCATGACATGGCAAGTGGATATATAATCTTGCAACTCTTATAAGTTGTTGATGCCATGCACCCAACAGTTTCTTACACAAAGGTCCCAAGTACTCATCTTCAAGCATCACTTCTGAGCTTTCGTAATGCAGTTCATTTGCTGATTTTGGTGTTCCAGGGGGCTGAAATCTTAGATCAATGTGTGTTCATAGGCCGGTGGGGAACATACACAGATGAATCATACAACTGGAACAACCCTTCACAAATGACCGACGACAATACGAGCCCAATGGTAAGCTAATAACCATCGAATACGAGTTCAAAATCTTTATGTCTCTTAATGACCACTAGATATCGAGTCGAAGTCAACCACGCTCCGTTTATACACAATATTTTGAATTGATCTCTGAAATTTCTGTATGAAAAAAAACAGGTTGCAGAAATCATGCATTCTGCATACACACCAGGGGAGGCTGTAACCGTGGCTCAACAAGTTGTCAAAACAATGCTATCAAAGGGATATGTTTTAACCAAAGATGCACTTGTAAAGGCTAAAGCTTTTGATGATTCTTGTCAAGTCTCAGCTTCTGCAGCAGCCAAAGTTTCTGAGCTTAGCAACAGAATTGGACTCACTGATGCAATTCATACCGGCATGGAAACTGTTAAATACATCGATGAGAAGTATCACGTTTCCGATATCACCCGATCAACTGCAATGGTTACTGGCACGGCGGCCGTGGTGGCAATGGGGGTGGCCGGGAAAGCGGCGATGGCTGCAGGTACGGCTGTAGTAAACAGCAGTTACTTTTCAAAGGGCGCGCTTTGGGTTTCGGATATGTTGAGCCGTGCTTCTAAGGCTGCAGCTGAAGTAGGTACGAGGAACAGTAAAGGAATAACAAAACTTTGAATCAAAACAACTGAAATACATAAATATACTCATGTTTTTTTCTTCTTGTCTGTCACTCAAATTCAGACTCTTGATGTGCAGCTTGGTATGATTATAAGTAATCATTCCCATGGTCTGTAATCTCGCTCGGGTAAATATGGTTGATACATTGTGAAACATTTGAACGATTTGTTCTATGTTGGTCATCGTGTTAAATTGCAAATAAGATCATTCAACTTTCGATTCTAATAGTAATAGGTCTCT

mRNA sequence

CTCAGAGCTACAGAGTTAGATGATGCGGGATTCTCTGCCAACAGAAAAACTCCCAAACGGAGAAGATAAGACTTCATTCCACGCCACGCTCCTTCCACCACAATATTCCACACTCCCCAATCCCAATAATTCGTGATTCACACGCGCCCTTCATGCAACTGGAATCGGTTCATCACAAAGTTCAGTACCATCAGCTACCAAAACTGATGCCAAAAAAAAAAAAAAAAAAAAAAAAAAATGTCGGCTAAGTTTTCAGATTTCAGATTTCAGCTCGGCCCCCTCTCGTCTTCTTCTCTCAGAGCTTCTATCAGGTACGCCATAGCCAAACTTCAAACCCTTTTTACTTTTCTGTCGGTTTCCATACTGATTTTCATCATTTATCTCCTCCTTCCATTGTTTTGGCTTATGGGTTTGTTTTAGGTTTTCATTTCAAGATCTGGGTTGTGTCTGTGGATTAACTTTGGCAAAATTCCTCTAATTTTTCATCTTTTTTTGTTGAATTCGAGCTGTTCTTCCTTGTAATTTACCCTGTTTTAGTTACCCCTTTGCTAAACAATTCTGGGACTTCCATATAGAGCTGGGTGGAACAATGTACTCTGGGGGCTATACTGCTGAAGTTACAAGTTTGTCACCTAAAGCCACAGAGAATGATGTTTATGATTTTTTCTCCCATTGTGGCGCGGTGGATCATGTAGAAATCCTCAGGTCGGGTGATTATGCGTGTACTGCTTATGTGACTTTCCGTGATGCTTTTGCTCTGGAAACTGCTATATTGCTTAGTGGGGCTGAAATCTTAGATCAATGTGTGTTCATAGGCCGGTGGGGAACATACACAGATGAATCATACAACTGGAACAACCCTTCACAAATGACCGACGACAATACGAGCCCAATGGTTGCAGAAATCATGCATTCTGCATACACACCAGGGGAGGCTGTAACCGTGGCTCAACAAGTTGTCAAAACAATGCTATCAAAGGGATATGTTTTAACCAAAGATGCACTTGTAAAGGCTAAAGCTTTTGATGATTCTTGTCAAGTCTCAGCTTCTGCAGCAGCCAAAGTTTCTGAGCTTAGCAACAGAATTGGACTCACTGATGCAATTCATACCGGCATGGAAACTGTTAAATACATCGATGAGAAGTATCACGTTTCCGATATCACCCGATCAACTGCAATGGTTACTGGCACGGCGGCCGTGGTGGCAATGGGGGTGGCCGGGAAAGCGGCGATGGCTGCAGGTACGGCTGTAGTAAACAGCAGTTACTTTTCAAAGGGCGCGCTTTGGGTTTCGGATATGTTGAGCCGTGCTTCTAAGGCTGCAGCTGAAGTAGGTACGAGGAACAGTAAAGGAATAACAAAACTTTGAATCAAAACAACTGAAATACATAAATATACTCATGTTTTTTTCTTCTTGTCTGTCACTCAAATTCAGACTCTTGATGTGCAGCTTGGTATGATTATAAGTAATCATTCCCATGGTCTGTAATCTCGCTCGGGTAAATATGGTTGATACATTGTGAAACATTTGAACGATTTGTTCTATGTTGGTCATCGTGTTAAATTGCAAATAAGATCATTCAACTTTCGATTCTAATAGTAATAGGTCTCT

Coding sequence (CDS)

ATGTACTCTGGGGGCTATACTGCTGAAGTTACAAGTTTGTCACCTAAAGCCACAGAGAATGATGTTTATGATTTTTTCTCCCATTGTGGCGCGGTGGATCATGTAGAAATCCTCAGGTCGGGTGATTATGCGTGTACTGCTTATGTGACTTTCCGTGATGCTTTTGCTCTGGAAACTGCTATATTGCTTAGTGGGGCTGAAATCTTAGATCAATGTGTGTTCATAGGCCGGTGGGGAACATACACAGATGAATCATACAACTGGAACAACCCTTCACAAATGACCGACGACAATACGAGCCCAATGGTTGCAGAAATCATGCATTCTGCATACACACCAGGGGAGGCTGTAACCGTGGCTCAACAAGTTGTCAAAACAATGCTATCAAAGGGATATGTTTTAACCAAAGATGCACTTGTAAAGGCTAAAGCTTTTGATGATTCTTGTCAAGTCTCAGCTTCTGCAGCAGCCAAAGTTTCTGAGCTTAGCAACAGAATTGGACTCACTGATGCAATTCATACCGGCATGGAAACTGTTAAATACATCGATGAGAAGTATCACGTTTCCGATATCACCCGATCAACTGCAATGGTTACTGGCACGGCGGCCGTGGTGGCAATGGGGGTGGCCGGGAAAGCGGCGATGGCTGCAGGTACGGCTGTAGTAAACAGCAGTTACTTTTCAAAGGGCGCGCTTTGGGTTTCGGATATGTTGAGCCGTGCTTCTAAGGCTGCAGCTGAAGTAGGTACGAGGAACAGTAAAGGAATAACAAAACTTTGA

Protein sequence

MYSGGYTAEVTSLSPKATENDVYDFFSHCGAVDHVEILRSGDYACTAYVTFRDAFALETAILLSGAEILDQCVFIGRWGTYTDESYNWNNPSQMTDDNTSPMVAEIMHSAYTPGEAVTVAQQVVKTMLSKGYVLTKDALVKAKAFDDSCQVSASAAAKVSELSNRIGLTDAIHTGMETVKYIDEKYHVSDITRSTAMVTGTAAVVAMGVAGKAAMAAGTAVVNSSYFSKGALWVSDMLSRASKAAAEVGTRNSKGITKL
Homology
[Close]
BLAST of Cp4.1LG01g22870 vs. Swiss-Prot
Match: BPA1_ARATH (Binding partner of ACD11 1 OS=Arabidopsis thaliana GN=BPA1 PE=1 SV=1)

HSP 1 Score: 112.8 bits (281), Expect = 5.5e-24
Identity = 83/254 (32.68%), Postives = 133/254 (52.36%), Query Frame = 1 

Query: 7   TAEVTSLSPKATENDVYDFFSHCGAVDHVEILRSGDYACTAYVTFRDAFALETAILLSGA 66
           + +V +LS  ATE+D+ +FFS  G V+ ++I +S +++  AYVTF++    ETA+LLSGA
Sbjct: 7   SVKVGNLSSGATEHDIKEFFSFSGEVESIDI-QSNEHS--AYVTFKETQGAETAVLLSGA 66

Query: 67  EILDQCVFIGRWGTYTDESYNWNNPSQMTDDNTSPMVAEIMHSAYTPGEAVTVAQQVVKT 126
            I DQ V I     Y+        P       T    AE           V  A+ VV +
Sbjct: 67  SIADQSVIIELAPNYS--------PPAAPHAETQSSGAE---------SVVQKAEDVVSS 126

Query: 127 MLSKGYVLTKDALVKAKAFDDSCQVSASAAAKVSELSNRIGLTDAIHTGM----ETVKYI 186
           ML+KG++L KDA+ KAKAFD+    +++A A V+ L  +IGL+  +  G     E +K +
Sbjct: 127 MLAKGFILGKDAVGKAKAFDEKHGFTSTATAGVASLDQKIGLSQKLTAGTSLVNEKIKAV 186

Query: 187 DEKYHVSDITRSTAMVTGTAAVVAMGVAGKAAMAAGTAVVNSSYFSKGALWVSDMLSRAS 246
           D+ + V++ T+S               A +   +AG+AV+ + Y   G  W +   +R +
Sbjct: 187 DQNFQVTERTKS-----------VYAAAEQTVSSAGSAVMKNRYVLTGVSWAAGAFNRVA 229

Query: 247 KAAAEVGTRNSKGI 257
           +AA EVG +  + +
Sbjct: 247 QAAGEVGQKTKEKV 229

[Close]
BLAST of Cp4.1LG01g22870 vs. TrEMBL
Match: A0A0A0KS66_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G635450 PE=4 SV=1)

HSP 1 Score: 419.5 bits (1077), Expect = 3.0e-114
Identity = 217/254 (85.43%), Postives = 234/254 (92.13%), Query Frame = 1 

Query: 1   MYSGGYTAEVTSLSPKATENDVYDFFSHCGAVDHVEILRSGDYACTAYVTFRDAFALETA 60
           MY+GGYTAEVTSLSPKATENDVYDFFSHCG V+HVEILRSGDYACTAYVTFRDAFALETA
Sbjct: 120 MYNGGYTAEVTSLSPKATENDVYDFFSHCGTVEHVEILRSGDYACTAYVTFRDAFALETA 179

Query: 61  ILLSGAEILDQCVFIGRWGTYTDESYNWNNPSQMTDDNTSPMVAEIMHSAYTPGEAVTVA 120
           ILLSGAEILDQCVFI RWG Y DES +WN+P+QMT+DNTS M  +IMHS +TPGEAVT+A
Sbjct: 180 ILLSGAEILDQCVFISRWGAYIDESDSWNSPAQMTNDNTSLMATKIMHSVHTPGEAVTMA 239

Query: 121 QQVVKTMLSKGYVLTKDALVKAKAFDDSCQVSASAAAKVSELSNRIGLTDAIHTGMETVK 180
           QQVVKTMLSKGYVLTKDALVKAKAFDDSCQVSA+AAAKV ELSNRIGLT+ I++GMETVK
Sbjct: 240 QQVVKTMLSKGYVLTKDALVKAKAFDDSCQVSATAAAKVYELSNRIGLTETINSGMETVK 299

Query: 181 YIDEKYHVSDITRSTAMVTGTAAVVAMGVAGKAAMAAGTAVVNSSYFSKGALWVSDMLSR 240
           YIDEK+HVSDITRS A VTGTAAVVA+ V GKAAMAAG AV+NSSYFSKGALWVSDMLSR
Sbjct: 300 YIDEKFHVSDITRSAAAVTGTAAVVAVTVTGKAAMAAGNAVINSSYFSKGALWVSDMLSR 359

Query: 241 ASKAAAEVGTRNSK 255
           A+KAAAE G   SK
Sbjct: 360 AAKAAAEAGKSISK 373

[Close]
BLAST of Cp4.1LG01g22870 vs. TrEMBL
Match: M5XD92_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa010349mg PE=4 SV=1)

HSP 1 Score: 347.8 bits (891), Expect = 1.1e-92
Identity = 182/254 (71.65%), Postives = 214/254 (84.25%), Query Frame = 1 

Query: 1   MYSGGYTAEVTSLSPKATENDVYDFFSHCGAVDHVEILRSGDYACTAYVTFRDAFALETA 60
           MY GGYTAEVTSLSPKATE DV+DFFSHCGAV+HVE++RSG+YACTAYVTFRDAFAL+TA
Sbjct: 1   MYPGGYTAEVTSLSPKATEQDVFDFFSHCGAVEHVEVIRSGEYACTAYVTFRDAFALQTA 60

Query: 61  ILLSGAEILDQCVFIGRWGTYTDESYNWNNPSQMTDDNTSPMVAEIMHSAYTPGEAVTVA 120
           ++LSGA I+DQCV I RWG+Y DES  WNNP    + NTS M         TPGEA+TVA
Sbjct: 61  VMLSGASIVDQCVSITRWGSYIDESDPWNNPYN-PEGNTSSMAFHTSEFVSTPGEAITVA 120

Query: 121 QQVVKTMLSKGYVLTKDALVKAKAFDDSCQVSASAAAKVSELSNRIGLTDAIHTGMETVK 180
           Q+VVKTM++KGYVL KDAL KAKAFD+S QVSA+AAAKV ELSNRIGLT+ I+ GME VK
Sbjct: 121 QEVVKTMVAKGYVLGKDALTKAKAFDESHQVSATAAAKVYELSNRIGLTEKINAGMEVVK 180

Query: 181 YIDEKYHVSDITRSTAMVTGTAAVVAMGVAGKAAMAAGTAVVNSSYFSKGALWVSDMLSR 240
             DEK+HVSDIT+S A V GTAAVVA  VAG+AA+AAG+A+VNSS+F+KGALWVSD L+R
Sbjct: 181 STDEKFHVSDITKSAATVAGTAAVVAATVAGEAAVAAGSALVNSSFFAKGALWVSDALTR 240

Query: 241 ASKAAAEVGTRNSK 255
           ASKAAA++G+  +K
Sbjct: 241 ASKAAADLGSHTNK 253

[Close]
BLAST of Cp4.1LG01g22870 vs. TrEMBL
Match: A0A067LAR5_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09751 PE=4 SV=1)

HSP 1 Score: 324.7 bits (831), Expect = 1.0e-85
Identity = 169/249 (67.87%), Postives = 200/249 (80.32%), Query Frame = 1 

Query: 1   MYSGGYTAEVTSLSPKATENDVYDFFSHCGAVDHVEILRSGDYACTAYVTFRDAFALETA 60
           MY GGYTAEVT LSPKAT  DVY+FF+HCG ++HVEI+RSG+ +CTAYVTF+ A+ALETA
Sbjct: 1   MYPGGYTAEVTCLSPKATVKDVYEFFAHCGVIEHVEIIRSGEDSCTAYVTFKGAYALETA 60

Query: 61  ILLSGAEILDQCVFIGRWGTYTDESYNWNNPSQMTDDNTSPMVAEIMHSAYTPGEAVTVA 120
           ILLSGA+I+DQ V + RWGTY +ESY WN+PS   +DN       +      PGEA+TVA
Sbjct: 61  ILLSGAKIVDQRVCVARWGTYMEESYPWNSPSWKVEDNIGSTDIHMSQCVSRPGEALTVA 120

Query: 121 QQVVKTMLSKGYVLTKDALVKAKAFDDSCQVSASAAAKVSELSNRIGLTDAIHTGMETVK 180
           Q VVKTMLSKGY+L KDAL+KAKAFD+S +VSA+A AKV+ELSNRIGLTD I + METVK
Sbjct: 121 QDVVKTMLSKGYILGKDALIKAKAFDESFKVSATATAKVAELSNRIGLTDKIQSSMETVK 180

Query: 181 YIDEKYHVSDITRSTAMVTGTAAVVAMGVAGKAAMAAGTAVVNSSYFSKGALWVSDMLSR 240
            +DEK HVSDIT S  +VTGTAAVVA    GKAA AA  AVVNSSYF KGALWVSD+L+R
Sbjct: 181 SVDEKLHVSDITASAILVTGTAAVVAATYTGKAAAAAANAVVNSSYFGKGALWVSDVLTR 240

Query: 241 ASKAAAEVG 250
           A++AAA+ G
Sbjct: 241 AAQAAADFG 249

[Close]
BLAST of Cp4.1LG01g22870 vs. TrEMBL
Match: B9IJW1_POPTR (RNA recognition motif-containing family protein OS=Populus trichocarpa GN=POPTR_0017s11770g PE=4 SV=2)

HSP 1 Score: 318.9 bits (816), Expect = 5.6e-84
Identity = 169/253 (66.80%), Postives = 205/253 (81.03%), Query Frame = 1 

Query: 1   MYSGGYTAEVTSLSPKATENDVYDFFSHCGAVDHVEILRSGDYACTAYVTFRDAFALETA 60
           MY GGYTAEVTSLSPKA E DVY+FFSHCGA++HVEI+RSG++ACTAYVTF+DA+ L+TA
Sbjct: 1   MYPGGYTAEVTSLSPKAEEKDVYEFFSHCGAIEHVEIIRSGEHACTAYVTFKDAYGLQTA 60

Query: 61  ILLSGAEILDQCVFIGRWGTYTDESYNWNNPSQMTDDNTSPMVAEIMHSAYTPGEAVTVA 120
           ILLS   I+DQ V I  WGT+ DE   W + S+  + NTS  V  ++    TPGEAVTVA
Sbjct: 61  ILLSATTIVDQRVCITHWGTFVDEFDAWGSSSK-DEGNTSSAVISLLVFVSTPGEAVTVA 120

Query: 121 QQVVKTMLSKGYVLTKDALVKAKAFDDSCQVSASAAAKVSELSNRIGLTDAIHTGMETVK 180
           Q+VVKTMLSKGY+L KDA+VKAKAFD+S QV A+AAAKVSELSNRIGLTD I+ GMETVK
Sbjct: 121 QEVVKTMLSKGYILGKDAMVKAKAFDESHQVLATAAAKVSELSNRIGLTDKIYAGMETVK 180

Query: 181 YIDEKYHVSDITRSTAMVTGTAAVVAMGVAGKAAMAAGTAVVNSSYFSKGALWVSDMLSR 240
            +DEKYHVS+ T+S A VTGTAAV A    GK A+AA  AVVNS+YF+KGALWVS +L++
Sbjct: 181 CVDEKYHVSEFTKSAASVTGTAAVSAATFTGKTAVAAANAVVNSTYFAKGALWVSGVLTQ 240

Query: 241 ASKAAAEVGTRNS 254
           A++AAA++G + S
Sbjct: 241 AAEAAADMGKKAS 252

[Close]
BLAST of Cp4.1LG01g22870 vs. TrEMBL
Match: U5FP37_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0017s11770g PE=4 SV=1)

HSP 1 Score: 318.5 bits (815), Expect = 7.3e-84
Identity = 170/253 (67.19%), Postives = 204/253 (80.63%), Query Frame = 1 

Query: 1   MYSGGYTAEVTSLSPKATENDVYDFFSHCGAVDHVEILRSGDYACTAYVTFRDAFALETA 60
           MY GGYTAEVTSLSPKA E DVY+FFSHCGA++HVEI+RSG++ACTAYVTF+DA+ L+TA
Sbjct: 1   MYPGGYTAEVTSLSPKAEEKDVYEFFSHCGAIEHVEIIRSGEHACTAYVTFKDAYGLQTA 60

Query: 61  ILLSGAEILDQCVFIGRWGTYTDESYNWNNPSQMTDDNTSPMVAEIMHSAYTPGEAVTVA 120
           ILLSGA I+DQ V I  WGT+ DE   W + S+  + NTS           TPGEAVTVA
Sbjct: 61  ILLSGATIVDQRVCITHWGTFVDEFDAWGSSSK-DEGNTSSAGIPFNQFVSTPGEAVTVA 120

Query: 121 QQVVKTMLSKGYVLTKDALVKAKAFDDSCQVSASAAAKVSELSNRIGLTDAIHTGMETVK 180
           Q+VVKTMLSKGY+L KDA+VKAKAFD+S QV A+AAAKVSELSNRIGLTD I+ GMETVK
Sbjct: 121 QEVVKTMLSKGYILGKDAMVKAKAFDESHQVLATAAAKVSELSNRIGLTDKIYAGMETVK 180

Query: 181 YIDEKYHVSDITRSTAMVTGTAAVVAMGVAGKAAMAAGTAVVNSSYFSKGALWVSDMLSR 240
            +DEKYHVS+ T+S A VTGTAAV A    GK A+AA  AVVNS+YF+KGALWVS +L++
Sbjct: 181 CVDEKYHVSEFTKSAASVTGTAAVSAATFTGKTAVAAANAVVNSTYFAKGALWVSGVLTQ 240

Query: 241 ASKAAAEVGTRNS 254
           A++AAA++G + S
Sbjct: 241 AAEAAADMGKKAS 252

[Close]
BLAST of Cp4.1LG01g22870 vs. TAIR10
Match: AT3G01210.1 (AT3G01210.1 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 246.1 bits (627), Expect = 2.3e-65
Identity = 139/249 (55.82%), Postives = 176/249 (70.68%), Query Frame = 1 

Query: 1   MYSGGYTAEVTSLSPKATENDVYDFFSHCGAVDHVEILRSGDYACTAYVTFRDAFALETA 60
           MY  GY A+VT+LSP+ATE DV+ FFSHCG V+ VEI      A TAYVTFRDA+AL+ A
Sbjct: 1   MYPCGYVAQVTNLSPQATEKDVHRFFSHCGIVELVEITGCQGDALTAYVTFRDAYALDMA 60

Query: 61  ILLSGAEILDQCVFIGRWGTYTDESYNWNNPSQMTDDNTSPMVAEIMHSAYTPGEAVTVA 120
           +LLSGA I+DQ V+I  +G Y  ES N        +++ S  V      A +PGEA+TVA
Sbjct: 61  VLLSGATIVDQTVWISVYGVYLHESNNLRQ-----EEDYSVTVTRSDAFASSPGEAITVA 120

Query: 121 QQVVKTMLSKGYVLTKDALVKAKAFDDSCQVSASAAAKVSELSNRIGLTDAIHTGMETVK 180
           QQVV+TML+KGYVL+KDA+ KAKA D+S + S+  A K++E+S+ +GLT  I + ME V+
Sbjct: 121 QQVVQTMLAKGYVLSKDAIGKAKALDESQRFSSLVATKLAEISHYLGLTQNIQSSMELVR 180

Query: 181 YIDEKYHVSDITRSTAMVTGTAAVVAMGVAGKAAMAAGTAVVNSSYFSKGALWVSDMLSR 240
             DEKYH SD T+S  +VTGTAAV A  + GK A AA T+VVNS YF+ GALW SD L R
Sbjct: 181 SADEKYHFSDFTKSAVLVTGTAAVAAATITGKVAAAAATSVVNSRYFANGALWFSDALGR 240

Query: 241 ASKAAAEVG 250
           A+KAAA +G
Sbjct: 241 AAKAAAHIG 244

[Close]
BLAST of Cp4.1LG01g22870 vs. TAIR10
Match: AT1G14340.1 (AT1G14340.1 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 236.9 bits (603), Expect = 1.4e-62
Identity = 133/251 (52.99%), Postives = 172/251 (68.53%), Query Frame = 1 

Query: 5   GYTAEVTSLSPKATENDVYDFFSHCGAVDHVEILRSGDYACTAYVTFRDAFALETAILLS 64
           GY  EVT LSP  T ND+ DFFS  G +  ++I+RSG+ ACTAYV F+D+++ ETA+LL+
Sbjct: 6   GYGVEVTGLSPSVTHNDLIDFFSFSGTIQDIDIVRSGEQACTAYVMFKDSYSQETAVLLT 65

Query: 65  GAEILDQCVFIGRWGTYTDESYNWNNPSQ-MTDDNTSPMVAEIMHSAYTPGEAVTVAQQV 124
           GA ILDQ V I RWG + +E   WN  S+   D++ S   A+   S +  GEAVT AQ+V
Sbjct: 66  GATILDQRVCITRWGQHHEEFDFWNATSRGFEDESDSQHYAQ--RSEFNAGEAVTKAQEV 125

Query: 125 VKTMLSKGYVLTKDALVKAKAFDDSCQVSASAAAKVSELSNRIGLTDAIHTGMETVKYID 184
           VK ML+ G+VL KDAL KAKAFD+S  VSA+A A+VS+L  RIGLTD I TG+E V+  D
Sbjct: 126 VKIMLATGFVLGKDALSKAKAFDESHGVSAAAVARVSQLEQRIGLTDKIFTGLEAVRMTD 185

Query: 185 EKYHVSDITRSTAMVTGTAAVVAMGVAGKAAMAAGTAVVNSSYFSKGALWVSDMLSRASK 244
           ++YHVSD  +S    T           G+ A AA T+VVNSSYFS GALW+S  L RA+K
Sbjct: 186 QRYHVSDTAKSAVFAT-----------GRTAAAAATSVVNSSYFSSGALWLSGALERAAK 243

Query: 245 AAAEVGTRNSK 255
           AA+++GTR S+
Sbjct: 246 AASDLGTRGSR 243

[Close]
BLAST of Cp4.1LG01g22870 vs. TAIR10
Match: AT4G17720.1 (AT4G17720.1 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 128.3 bits (321), Expect = 7.1e-30
Identity = 87/251 (34.66%), Postives = 138/251 (54.98%), Query Frame = 1 

Query: 7   TAEVTSLSPKATENDVYDFFSHCGAVDHVEILRSGDYACTAYVTFRDAFALETAILLSGA 66
           T +V+++S  AT+ D+ +FFS  G + ++E     +    AYVTF+D    ETA+LLSGA
Sbjct: 5   TVKVSNVSLGATDRDLKEFFSFSGDILYLETQSETERTKLAYVTFKDLQGAETAVLLSGA 64

Query: 67  EILDQCVFIGRWGTY--TDESYNWNNPSQMTDDNTSPMVAEIMHSAYTPGEAVTVAQQVV 126
            I+D  V +     Y  + E+     P    D N SP   +           +  A+ VV
Sbjct: 65  TIVDSSVIVSMAPDYQLSPEALASLEPK---DSNKSPKAGD---------SVLRKAEDVV 124

Query: 127 KTMLSKGYVLTKDALVKAKAFDDSCQVSASAAAKVSELSNRIGLTDAIHTGM----ETVK 186
            +ML+KG++L KDA+ KAK+ D+  Q++++A+AKV+    +IG TD I+TG     E V+
Sbjct: 125 SSMLAKGFILGKDAIAKAKSVDEKHQLTSTASAKVASFDKKIGFTDKINTGTVVVGEKVR 184

Query: 187 YIDEKYHVSDITRSTAMVTGTAAVVAMGVAGKAAMAAGTAVVNSSYFSKGALWVSDMLSR 246
            +D+KY VS+ T+S           A+  A +    AG+A++ + Y   GA WV+   ++
Sbjct: 185 EVDQKYQVSEKTKS-----------AIAAAEQTVSNAGSAIMKNRYVLTGATWVTGAFNK 232

Query: 247 ASKAAAEVGTR 252
            +KAA EVG +
Sbjct: 245 VAKAAEEVGQK 232

[Close]
BLAST of Cp4.1LG01g22870 vs. TAIR10
Match: AT5G46870.1 (AT5G46870.1 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 127.1 bits (318), Expect = 1.6e-29
Identity = 89/254 (35.04%), Postives = 142/254 (55.91%), Query Frame = 1 

Query: 7   TAEVTSLSPKATENDVYDFFSHCGAVDHVEILRSGDYACTAYVTFRDAFALETAILLSGA 66
           T +V+++S +ATE D+ +FFS  G + ++E     D +  AYVTF+D    ETA+LL+G+
Sbjct: 5   TVKVSNVSLEATERDLKEFFSFSGDIAYLETQSENDGSKLAYVTFKDLQGAETAVLLTGS 64

Query: 67  EILDQCVFIGRWGTYTDESYNWNNPSQMTDDNTSPM--VAEIMHSAYTPGEAVTV---AQ 126
            I+D  V +     Y           Q+  D  + +  + E   S+    E V+V   A+
Sbjct: 65  TIVDSSVTVTMSPDY-----------QLPPDALASIESLKESNKSSSPTREDVSVFRKAE 124

Query: 127 QVVKTMLSKGYVLTKDALVKAKAFDDSCQVSASAAAKVSELSNRIGLTDAIHTG----ME 186
            VV  M+SKG+VL KDA+ KAK+ D+  Q++++A+A+V+    RIG T+ I+TG     E
Sbjct: 125 DVVSGMISKGFVLGKDAIAKAKSLDEKHQLTSTASARVTSFDKRIGFTEKINTGTTVVSE 184

Query: 187 TVKYIDEKYHVSDITRSTAMVTGTAAVVAMGVAGKAAMAAGTAVVNSSYFSKGALWVSDM 246
            VK +D+K+ V++ T+S           A+  A +    AG+A++ + Y   GA WV+  
Sbjct: 185 KVKEVDQKFQVTEKTKS-----------AIAAAEQTVSNAGSAIMKNRYVLTGATWVTGA 236

Query: 247 LSRASKAAAEVGTR 252
            +R SKAA EVG +
Sbjct: 245 FNRVSKAAEEVGQK 236

[Close]
BLAST of Cp4.1LG01g22870 vs. TAIR10
Match: AT5G32450.1 (AT5G32450.1 RNA binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 122.5 bits (306), Expect = 3.9e-28
Identity = 90/258 (34.88%), Postives = 136/258 (52.71%), Query Frame = 1 

Query: 7   TAEVTSLSPKATENDVYDFFSHCGAVDHVEILRSGDYACTAYVTFRDAFALETAILLSGA 66
           + +V ++S  ATE ++++FFS  G ++H+EI +    +  A+VTF D  ALE A+LLSGA
Sbjct: 6   SVQVNNVSDLATEREIHEFFSFSGDIEHIEIQKEFGQSRIAFVTFTDPKALEIALLLSGA 65

Query: 67  EILDQCVFIGRWGTYTDESYNWNNPSQMTDDNTSPM-VAEIMHSAYTPGEA-----VTVA 126
            I+DQ V I R   Y               DN  P+ + E      T  +      V+ A
Sbjct: 66  TIVDQIVTITRAENYVQRR---ETQEVRMLDNAMPLGLQESTTQTKTNMDGNSRAYVSKA 125

Query: 127 QQVVKTMLSKGYVLTKDALVKAKAFDDSCQVSASAAAKVSELSNRIGLTDAIHTGM---- 186
           Q VV T+L+KG  L +DA+ KAKAFD+  Q+ A+A+AKVS    R+GLT+ +  G+    
Sbjct: 126 QDVVATVLAKGSALGQDAVNKAKAFDEKHQLRANASAKVSSFDKRVGLTEKLSVGISAVN 185

Query: 187 ETVKYIDEKYHVSDITRSTAMVTGTAAVVAMGVAGKAAMAAGTAVVNSSYFSKGALWVSD 246
           E VK +D+K  VSD T           + A+  A +     G+AV +S Y + GA W S 
Sbjct: 186 EKVKSVDQKLQVSDKT-----------MAAIFAAERKLNDTGSAVKSSRYVTAGAAWFSG 245

Query: 247 MLSRASKAAAEVGTRNSK 255
             S+ ++     G++  +
Sbjct: 246 AFSKVARVGQVAGSKTKE 249

[Close]
BLAST of Cp4.1LG01g22870 vs. NCBI nr
Match: gi|449461921|ref|XP_004148690.1| (PREDICTED: uncharacterized protein LOC101212338 [Cucumis sativus])

HSP 1 Score: 419.5 bits (1077), Expect = 4.4e-114
Identity = 217/254 (85.43%), Postives = 234/254 (92.13%), Query Frame = 1 

Query: 1   MYSGGYTAEVTSLSPKATENDVYDFFSHCGAVDHVEILRSGDYACTAYVTFRDAFALETA 60
           MY+GGYTAEVTSLSPKATENDVYDFFSHCG V+HVEILRSGDYACTAYVTFRDAFALETA
Sbjct: 1   MYNGGYTAEVTSLSPKATENDVYDFFSHCGTVEHVEILRSGDYACTAYVTFRDAFALETA 60

Query: 61  ILLSGAEILDQCVFIGRWGTYTDESYNWNNPSQMTDDNTSPMVAEIMHSAYTPGEAVTVA 120
           ILLSGAEILDQCVFI RWG Y DES +WN+P+QMT+DNTS M  +IMHS +TPGEAVT+A
Sbjct: 61  ILLSGAEILDQCVFISRWGAYIDESDSWNSPAQMTNDNTSLMATKIMHSVHTPGEAVTMA 120

Query: 121 QQVVKTMLSKGYVLTKDALVKAKAFDDSCQVSASAAAKVSELSNRIGLTDAIHTGMETVK 180
           QQVVKTMLSKGYVLTKDALVKAKAFDDSCQVSA+AAAKV ELSNRIGLT+ I++GMETVK
Sbjct: 121 QQVVKTMLSKGYVLTKDALVKAKAFDDSCQVSATAAAKVYELSNRIGLTETINSGMETVK 180

Query: 181 YIDEKYHVSDITRSTAMVTGTAAVVAMGVAGKAAMAAGTAVVNSSYFSKGALWVSDMLSR 240
           YIDEK+HVSDITRS A VTGTAAVVA+ V GKAAMAAG AV+NSSYFSKGALWVSDMLSR
Sbjct: 181 YIDEKFHVSDITRSAAAVTGTAAVVAVTVTGKAAMAAGNAVINSSYFSKGALWVSDMLSR 240

Query: 241 ASKAAAEVGTRNSK 255
           A+KAAAE G   SK
Sbjct: 241 AAKAAAEAGKSISK 254

[Close]
BLAST of Cp4.1LG01g22870 vs. NCBI nr
Match: gi|700197273|gb|KGN52450.1| (hypothetical protein Csa_5G635450 [Cucumis sativus])

HSP 1 Score: 419.5 bits (1077), Expect = 4.4e-114
Identity = 217/254 (85.43%), Postives = 234/254 (92.13%), Query Frame = 1 

Query: 1   MYSGGYTAEVTSLSPKATENDVYDFFSHCGAVDHVEILRSGDYACTAYVTFRDAFALETA 60
           MY+GGYTAEVTSLSPKATENDVYDFFSHCG V+HVEILRSGDYACTAYVTFRDAFALETA
Sbjct: 120 MYNGGYTAEVTSLSPKATENDVYDFFSHCGTVEHVEILRSGDYACTAYVTFRDAFALETA 179

Query: 61  ILLSGAEILDQCVFIGRWGTYTDESYNWNNPSQMTDDNTSPMVAEIMHSAYTPGEAVTVA 120
           ILLSGAEILDQCVFI RWG Y DES +WN+P+QMT+DNTS M  +IMHS +TPGEAVT+A
Sbjct: 180 ILLSGAEILDQCVFISRWGAYIDESDSWNSPAQMTNDNTSLMATKIMHSVHTPGEAVTMA 239

Query: 121 QQVVKTMLSKGYVLTKDALVKAKAFDDSCQVSASAAAKVSELSNRIGLTDAIHTGMETVK 180
           QQVVKTMLSKGYVLTKDALVKAKAFDDSCQVSA+AAAKV ELSNRIGLT+ I++GMETVK
Sbjct: 240 QQVVKTMLSKGYVLTKDALVKAKAFDDSCQVSATAAAKVYELSNRIGLTETINSGMETVK 299

Query: 181 YIDEKYHVSDITRSTAMVTGTAAVVAMGVAGKAAMAAGTAVVNSSYFSKGALWVSDMLSR 240
           YIDEK+HVSDITRS A VTGTAAVVA+ V GKAAMAAG AV+NSSYFSKGALWVSDMLSR
Sbjct: 300 YIDEKFHVSDITRSAAAVTGTAAVVAVTVTGKAAMAAGNAVINSSYFSKGALWVSDMLSR 359

Query: 241 ASKAAAEVGTRNSK 255
           A+KAAAE G   SK
Sbjct: 360 AAKAAAEAGKSISK 373

[Close]
BLAST of Cp4.1LG01g22870 vs. NCBI nr
Match: gi|659119511|ref|XP_008459695.1| (PREDICTED: uncharacterized protein LOC103498736 [Cucumis melo])

HSP 1 Score: 352.4 bits (903), Expect = 6.5e-94
Identity = 186/219 (84.93%), Postives = 200/219 (91.32%), Query Frame = 1 

Query: 36  EILRSGDYACTAYVTFRDAFALETAILLSGAEILDQCVFIGRWGTYTDESYNWNNPSQMT 95
           +ILRSGDYACTAYVTFRDAFALETAILLSGAEILDQCVFI RWG Y DES  WN+P+QMT
Sbjct: 32  KILRSGDYACTAYVTFRDAFALETAILLSGAEILDQCVFISRWGAYIDESDTWNSPAQMT 91

Query: 96  DDNTSPMVAEIMHSAYTPGEAVTVAQQVVKTMLSKGYVLTKDALVKAKAFDDSCQVSASA 155
           +DNTS MV EIMHS +TPGEAVT+AQQVVKTMLSKGYVLTKDALVKAKAFDDSCQVSA+A
Sbjct: 92  NDNTSLMVTEIMHSVHTPGEAVTMAQQVVKTMLSKGYVLTKDALVKAKAFDDSCQVSATA 151

Query: 156 AAKVSELSNRIGLTDAIHTGMETVKYIDEKYHVSDITRSTAMVTGTAAVVAMGVAGKAAM 215
           AAKV ELSNRIGLT+ I+ GMETVKYIDEK+HVSDITRS A VTGTAAVVA+ V GKAAM
Sbjct: 152 AAKVYELSNRIGLTETINAGMETVKYIDEKFHVSDITRSAAAVTGTAAVVAVTVTGKAAM 211

Query: 216 AAGTAVVNSSYFSKGALWVSDMLSRASKAAAEVGTRNSK 255
           AAG AV+NSSYFSKGALWVSDMLSRA+KAAAE G  +SK
Sbjct: 212 AAGNAVINSSYFSKGALWVSDMLSRAAKAAAEAGKNSSK 250

[Close]
BLAST of Cp4.1LG01g22870 vs. NCBI nr
Match: gi|645249430|ref|XP_008230748.1| (PREDICTED: protein vip1 [Prunus mume])

HSP 1 Score: 350.5 bits (898), Expect = 2.5e-93
Identity = 184/254 (72.44%), Postives = 214/254 (84.25%), Query Frame = 1 

Query: 1   MYSGGYTAEVTSLSPKATENDVYDFFSHCGAVDHVEILRSGDYACTAYVTFRDAFALETA 60
           MY GGYTAEVTSLSPKATE DVYDFFSHCGAV+HVE++RSG+YACTAYVTFRDAFAL+TA
Sbjct: 1   MYPGGYTAEVTSLSPKATEQDVYDFFSHCGAVEHVEVIRSGEYACTAYVTFRDAFALQTA 60

Query: 61  ILLSGAEILDQCVFIGRWGTYTDESYNWNNPSQMTDDNTSPMVAEIMHSAYTPGEAVTVA 120
           ++LSGA I+DQCV I RWG+Y DES  WNNP    + NTS M         TPGEA+TVA
Sbjct: 61  VMLSGASIVDQCVSITRWGSYIDESDPWNNPYN-PEGNTSSMAFHTSEFVSTPGEAITVA 120

Query: 121 QQVVKTMLSKGYVLTKDALVKAKAFDDSCQVSASAAAKVSELSNRIGLTDAIHTGMETVK 180
           Q+VVKTM++KGYVL KDAL KAKAFD+S QVSA+AAAKV ELSNRIGLT+ I+ GME VK
Sbjct: 121 QEVVKTMVAKGYVLGKDALTKAKAFDESHQVSATAAAKVYELSNRIGLTEKINAGMEVVK 180

Query: 181 YIDEKYHVSDITRSTAMVTGTAAVVAMGVAGKAAMAAGTAVVNSSYFSKGALWVSDMLSR 240
             DEK+HVSDIT+S A V GTAAVVA  VAG+AA+AAG+A+VNSS+F+KGALWVSD L+R
Sbjct: 181 STDEKFHVSDITKSAATVAGTAAVVAATVAGEAAVAAGSALVNSSFFAKGALWVSDALTR 240

Query: 241 ASKAAAEVGTRNSK 255
           ASKAAA++G+  SK
Sbjct: 241 ASKAAADLGSHTSK 253

[Close]
BLAST of Cp4.1LG01g22870 vs. NCBI nr
Match: gi|595940965|ref|XP_007215851.1| (hypothetical protein PRUPE_ppa010349mg [Prunus persica])

HSP 1 Score: 347.8 bits (891), Expect = 1.6e-92
Identity = 182/254 (71.65%), Postives = 214/254 (84.25%), Query Frame = 1 

Query: 1   MYSGGYTAEVTSLSPKATENDVYDFFSHCGAVDHVEILRSGDYACTAYVTFRDAFALETA 60
           MY GGYTAEVTSLSPKATE DV+DFFSHCGAV+HVE++RSG+YACTAYVTFRDAFAL+TA
Sbjct: 1   MYPGGYTAEVTSLSPKATEQDVFDFFSHCGAVEHVEVIRSGEYACTAYVTFRDAFALQTA 60

Query: 61  ILLSGAEILDQCVFIGRWGTYTDESYNWNNPSQMTDDNTSPMVAEIMHSAYTPGEAVTVA 120
           ++LSGA I+DQCV I RWG+Y DES  WNNP    + NTS M         TPGEA+TVA
Sbjct: 61  VMLSGASIVDQCVSITRWGSYIDESDPWNNPYN-PEGNTSSMAFHTSEFVSTPGEAITVA 120

Query: 121 QQVVKTMLSKGYVLTKDALVKAKAFDDSCQVSASAAAKVSELSNRIGLTDAIHTGMETVK 180
           Q+VVKTM++KGYVL KDAL KAKAFD+S QVSA+AAAKV ELSNRIGLT+ I+ GME VK
Sbjct: 121 QEVVKTMVAKGYVLGKDALTKAKAFDESHQVSATAAAKVYELSNRIGLTEKINAGMEVVK 180

Query: 181 YIDEKYHVSDITRSTAMVTGTAAVVAMGVAGKAAMAAGTAVVNSSYFSKGALWVSDMLSR 240
             DEK+HVSDIT+S A V GTAAVVA  VAG+AA+AAG+A+VNSS+F+KGALWVSD L+R
Sbjct: 181 STDEKFHVSDITKSAATVAGTAAVVAATVAGEAAVAAGSALVNSSFFAKGALWVSDALTR 240

Query: 241 ASKAAAEVGTRNSK 255
           ASKAAA++G+  +K
Sbjct: 241 ASKAAADLGSHTNK 253

The following BLAST results are available for this feature:
BLAST of Cp4.1LG01g22870 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BPA1_ARATH5.5e-2432.68Binding partner of ACD11 1 OS=Arabidopsis thaliana GN=BPA1 PE=1 SV=1[more]
BLAST of Cp4.1LG01g22870 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KS66_CUCSA3.0e-11485.43Uncharacterized protein OS=Cucumis sativus GN=Csa_5G635450 PE=4 SV=1[more]
M5XD92_PRUPE1.1e-9271.65Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa010349mg PE=4 SV=1[more]
A0A067LAR5_JATCU1.0e-8567.87Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09751 PE=4 SV=1[more]
B9IJW1_POPTR5.6e-8466.80RNA recognition motif-containing family protein OS=Populus trichocarpa GN=POPTR_... [more]
U5FP37_POPTR7.3e-8467.19Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0017s11770g PE=4 SV=1[more]
BLAST of Cp4.1LG01g22870 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G01210.12.3e-6555.82 RNA-binding (RRM/RBD/RNP motifs) family protein[more]
AT1G14340.11.4e-6252.99 RNA-binding (RRM/RBD/RNP motifs) family protein[more]
AT4G17720.17.1e-3034.66 RNA-binding (RRM/RBD/RNP motifs) family protein[more]
AT5G46870.11.6e-2935.04 RNA-binding (RRM/RBD/RNP motifs) family protein[more]
AT5G32450.13.9e-2834.88 RNA binding (RRM/RBD/RNP motifs) family protein[more]
BLAST of Cp4.1LG01g22870 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449461921|ref|XP_004148690.1|4.4e-11485.43PREDICTED: uncharacterized protein LOC101212338 [Cucumis sativus][more]
gi|700197273|gb|KGN52450.1|4.4e-11485.43hypothetical protein Csa_5G635450 [Cucumis sativus][more]
gi|659119511|ref|XP_008459695.1|6.5e-9484.93PREDICTED: uncharacterized protein LOC103498736 [Cucumis melo][more]
gi|645249430|ref|XP_008230748.1|2.5e-9372.44PREDICTED: protein vip1 [Prunus mume][more]
gi|595940965|ref|XP_007215851.1|1.6e-9271.65hypothetical protein PRUPE_ppa010349mg [Prunus persica][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0000166nucleotide binding
GO:0003676nucleic acid binding
Vocabulary: INTERPRO
TermDefinition
IPR012677Nucleotide-bd_a/b_plait_sf
IPR000504RRM_dom
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0000166 nucleotide binding
molecular_function GO:0003723 RNA binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG01g22870.1Cp4.1LG01g22870.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 10..70
score: 1.
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 7..76
score: 9.
IPR000504RNA recognition motif domainPROFILEPS50102RRMcoord: 6..77
score: 9
IPR012677Nucleotide-binding alpha-beta plait domainGENE3DG3DSA:3.30.70.330coord: 10..73
score: 3.
IPR012677Nucleotide-binding alpha-beta plait domainunknownSSF54928RNA-binding domain, RBDcoord: 9..78
score: 2.15

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG01g22870Cucsa.158400Cucumber (Gy14) v1cgycpeB0425
Cp4.1LG01g22870CmaCh04G027580Cucurbita maxima (Rimu)cmacpeB721
Cp4.1LG01g22870CmoCh04G028860Cucurbita moschata (Rifu)cmocpeB673
Cp4.1LG01g22870Cla010339Watermelon (97103) v1cpewmB381
Cp4.1LG01g22870Csa5G635450Cucumber (Chinese Long) v2cpecuB415
Cp4.1LG01g22870MELO3C021980Melon (DHL92) v3.5.1cpemeB358
Cp4.1LG01g22870MELO3C012080Melon (DHL92) v3.5.1cpemeB386
Cp4.1LG01g22870ClCG09G018340Watermelon (Charleston Gray)cpewcgB344
Cp4.1LG01g22870CSPI05G28830Wild cucumber (PI 183967)cpecpiB414
Cp4.1LG01g22870Lsi02G014930Bottle gourd (USVL1VR-Ls)cpelsiB336
Cp4.1LG01g22870MELO3C012080.2Melon (DHL92) v3.6.1cpemedB447
Cp4.1LG01g22870MELO3C021980.2Melon (DHL92) v3.6.1cpemedB418
Cp4.1LG01g22870CsaV3_5G037940Cucumber (Chinese Long) v3cpecucB0517
Cp4.1LG01g22870CsaV3_5G032520Cucumber (Chinese Long) v3cpecucB0534
Cp4.1LG01g22870Bhi07G001294Wax gourdcpewgoB0573
Cp4.1LG01g22870Bhi06G000349Wax gourdcpewgoB0502
Cp4.1LG01g22870CsGy5G028190Cucumber (Gy14) v2cgybcpeB625
Cp4.1LG01g22870CsGy5G023110Cucumber (Gy14) v2cgybcpeB643
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Cp4.1LG01g22870Cp4.1LG09g01660Cucurbita pepo (Zucchini)cpecpeB039
The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG01g22870Cucurbita pepo (Zucchini)cpecpeB199
Cp4.1LG01g22870Cucurbita pepo (Zucchini)cpecpeB347
Cp4.1LG01g22870Cucurbita pepo (Zucchini)cpecpeB397
Cp4.1LG01g22870Cucurbita maxima (Rimu)cmacpeB317
Cp4.1LG01g22870Cucurbita moschata (Rifu)cmocpeB279
Cp4.1LG01g22870Cucumber (Gy14) v2cgybcpeB064
Cp4.1LG01g22870Melon (DHL92) v3.6.1cpemedB452
Cp4.1LG01g22870Melon (DHL92) v3.6.1cpemedB474
Cp4.1LG01g22870Silver-seed gourdcarcpeB0374
Cp4.1LG01g22870Silver-seed gourdcarcpeB0509
Cp4.1LG01g22870Silver-seed gourdcarcpeB0612
Cp4.1LG01g22870Silver-seed gourdcarcpeB0965
Cp4.1LG01g22870Cucumber (Chinese Long) v3cpecucB0495