Cp4.1LG01g22720 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG01g22720
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionPentatricopeptide repeat-containing protein, putative
LocationCp4.1LG01 : 20002836 .. 20005406 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAGTCCCTCTCTATCAAAACTATGGTCATGATCACCTTCAACGTACTTCCCTCTCCAGCTCTACTTCCTACTTCTCCCATCATTTCTCCGGTTCCGAGCTTTTTAGGGACAGATCTTTGCTGTCTGCGTATTCTTTGTGGTCCAATAGAAGAAAATTGCGTGATTCGTTTTGTTGGGTCAAGTGCTCTTCCTTGGAACAAGGGCTACGGCCACGACTCAAACCCAAGCCTTCGAAAGTCGATCGCGACGTTCGTAAAGGAACGCCGCCTGCGAAGGAGACCCGAATTACAAAATCCAGTGTACGGATCTGTTGCCATATTGAGAAGTTGGTTTTGTGTAATAAGTTCAGAGATGCACTTGAGATGTTTGAAATTCTTGAGCTGGAGGGTGGTTATGATGTTGGTAATAGCACATTTGATGCGTTGATTAATGCGTGTATTGGCTTGAAATCTATAAGAGGGGCGAAGAGGTTGTGTGCTTACATGATTGATAATGGAATTGAGCCTGATCAATATATTATGAACAGGATTCTACTTATGCATGTGAGATGTGGGATGATGATTGATGCTTCTAAATTGTTCGATGAAATGCCCGAGAGGAATGCGGTTTCGTGGAATACCATAATTTCCGGGTATGTAGACTCTGGAAATTATAAAGAAGCGTTTAGATTGTTCATTATGATGTGGGAAGAGTATCCTGGTTGCAGCCCTCGCACCTTTGCCACCGTGATACGGGCATTGGCTGGTTTGGAACTTATTTTTCCTGGTAGGCAATTACATTCGTGTGCGGTAAAGGCAGGCGTAGGACAGGACATTTTTGTTTCCTGTGCGCTGATTGACATGTACAGCAAGTGTGGAGGCCTTGAAGACGCTCATTGTGTCTTTGATGAGATGCCCGACAAGACAATAGTTGGATGGAATTCAATTATAGCTGGTTACGCACTCCATGGCTACAGTGAAGAAGCTCTGAATCTATATTATCAGATGCGTGACTCTGGAGTTAAAATCGACCATTTCACCTTTTCGATAATTATAAGGATATGTTCGAGATTGGCCTCGGTAACACGTGCTAAGCAAGCGCACGCGAGTTTAGTTCGTAATGGTTTTGGGTTAGATGTAGTAGCTAATACAGCACTTGTGGATTTCTATAGCAAATGGGGAAAGGTAGATGATGCTAGACATATTTTTGACAGAATGTCCTGTAAAAACTTGATATCATGGAATGCTTTGATAGCTGGATATGGGAATCACGGTCGAGGGGAGGAGGCCATTGAGATATTTGAGAGAATGCTTCGGGAAGGCATGGTACCAAACCATGTGACATTTCTTGCTGTTTTATCTGCATGCAGCATTTCAGGTTTATTCGAACGTGGATGGGAAATTTTTCAATCAATGACTAGGGATCATAAGATCAAACTGCGCGCTATGCATTACACGTGCATGATTGAATTGCTAGGTCGAGAAGGGCTCCTAGACGAAGCCTATGCCCTTATAAGGAAAGCTCCATTTCAACCAACAGCAAATATGTGGGCTGCCTTGCTTAGAGCTTGTAGAGTTCATGAAAATCTAGAACTTGGAAAATACGCTGCTGAAAAACTTTACGGGATGGAACCCGAGAAGCTTCGTAATTATATAGTGTTGTTAAACATATATAAAAGCTCTGGCAAGTTAAAGGAAGCATCTGATGTTGTTCGGACATTGAAACGAAAGGGCTTGAGTATGCTTCCAGCATGTAGTTGGATTGAAGTTAAACATCAACCCCACGCATTCCAATCTGGGGATAAACACCATCCCGAAATAGAAAAAGTCGTCAAAAAAGTGGACGAGTTAATGTTAGAGATCACAAAGCTTGGTTATGTTCCTGAACGGAACATCTTGCTTCCAGATGTAGATCATGAAGAAAAGATACAGATATACCACAGTGAGAAATTGGCCATAGCTTATGGACTTATCAATACTTTAAATCATACGCCATTACAAATTGTGCAGGGCCATCGTGTTTGTGGTGACTGCCATTCTGTGATTAAGCTGATTGCTATGATAACCAAACGTGAAATTGTGGTGAGAGATGCTAGCAGATTCCACCATTTCAGAGATGGGAGGTGTTCTTGTGGGGACTATTGGTGATTAAGGTAAACCCACATTGTTATTTGTTTGTTTAATTTTGTAGAAACGGGCAGCATCTGTTCCATTGATATATACTATTGTACATTCTTTTTCAAGGAGCTTATAATGAAATGAATTCATGACATTCTGTTCTCAACAGTAGGCTGATTCTTGGCATGTATTGTTATAAGATAATCTGTCATCCTGTTCATATCAACAAACCCCCATTTAAAGACTTCATTTTCGTAGGATGGATAGAGAATTCTTAGAGCTTTTAAATCTTAGATAGATGGGTTTTGTGAAATTTGAACCTGGATAATTTGGATGGAGGACGAATCTCCTCTGAGGACATGAAAGAACAGAAAAGAAGAGGGACAGTGGAGGAAGAAGGTGGCCATGGCGACAAGGTGAGGAGATGAGGTGACTCGACGACGATGATGAGGTGAGGGCTTTGGCACCACC

mRNA sequence

ATGGAAGTCCCTCTCTATCAAAACTATGGTCATGATCACCTTCAACGTACTTCCCTCTCCAGCTCTACTTCCTACTTCTCCCATCATTTCTCCGGTTCCGAGCTTTTTAGGGACAGATCTTTGCTGTCTGCGTATTCTTTGTGGTCCAATAGAAGAAAATTGCGTGATTCGTTTTGTTGGGTCAAGTGCTCTTCCTTGGAACAAGGGCTACGGCCACGACTCAAACCCAAGCCTTCGAAAGTCGATCGCGACGTTCGTAAAGGAACGCCGCCTGCGAAGGAGACCCGAATTACAAAATCCAGTGTACGGATCTGTTGCCATATTGAGAAGTTGGTTTTGTGTAATAAGTTCAGAGATGCACTTGAGATGTTTGAAATTCTTGAGCTGGAGGGTGGTTATGATGTTGGTAATAGCACATTTGATGCGTTGATTAATGCGTGTATTGGCTTGAAATCTATAAGAGGGGCGAAGAGGTTGTGTGCTTACATGATTGATAATGGAATTGAGCCTGATCAATATATTATGAACAGGATTCTACTTATGCATGTGAGATGTGGGATGATGATTGATGCTTCTAAATTGTTCGATGAAATGCCCGAGAGGAATGCGGTTTCGTGGAATACCATAATTTCCGGGTATGTAGACTCTGGAAATTATAAAGAAGCGTTTAGATTGTTCATTATGATGTGGGAAGAGTATCCTGGTTGCAGCCCTCGCACCTTTGCCACCGTGATACGGGCATTGGCTGGTTTGGAACTTATTTTTCCTGGACGAATCTCCTCTGAGGACATGAAAGAACAGAAAAGAAGAGGGACAGTGGAGGAAGAAGGTGGCCATGGCGACAAGGTGAGGAGATGAGGTGACTCGACGACGATGATGAGGTGAGGGCTTTGGCACCACC

Coding sequence (CDS)

ATGGAAGTCCCTCTCTATCAAAACTATGGTCATGATCACCTTCAACGTACTTCCCTCTCCAGCTCTACTTCCTACTTCTCCCATCATTTCTCCGGTTCCGAGCTTTTTAGGGACAGATCTTTGCTGTCTGCGTATTCTTTGTGGTCCAATAGAAGAAAATTGCGTGATTCGTTTTGTTGGGTCAAGTGCTCTTCCTTGGAACAAGGGCTACGGCCACGACTCAAACCCAAGCCTTCGAAAGTCGATCGCGACGTTCGTAAAGGAACGCCGCCTGCGAAGGAGACCCGAATTACAAAATCCAGTGTACGGATCTGTTGCCATATTGAGAAGTTGGTTTTGTGTAATAAGTTCAGAGATGCACTTGAGATGTTTGAAATTCTTGAGCTGGAGGGTGGTTATGATGTTGGTAATAGCACATTTGATGCGTTGATTAATGCGTGTATTGGCTTGAAATCTATAAGAGGGGCGAAGAGGTTGTGTGCTTACATGATTGATAATGGAATTGAGCCTGATCAATATATTATGAACAGGATTCTACTTATGCATGTGAGATGTGGGATGATGATTGATGCTTCTAAATTGTTCGATGAAATGCCCGAGAGGAATGCGGTTTCGTGGAATACCATAATTTCCGGGTATGTAGACTCTGGAAATTATAAAGAAGCGTTTAGATTGTTCATTATGATGTGGGAAGAGTATCCTGGTTGCAGCCCTCGCACCTTTGCCACCGTGATACGGGCATTGGCTGGTTTGGAACTTATTTTTCCTGGACGAATCTCCTCTGAGGACATGAAAGAACAGAAAAGAAGAGGGACAGTGGAGGAAGAAGGTGGCCATGGCGACAAGGTGAGGAGATGA

Protein sequence

MEVPLYQNYGHDHLQRTSLSSSTSYFSHHFSGSELFRDRSLLSAYSLWSNRRKLRDSFCWVKCSSLEQGLRPRLKPKPSKVDRDVRKGTPPAKETRITKSSVRICCHIEKLVLCNKFRDALEMFEILELEGGYDVGNSTFDALINACIGLKSIRGAKRLCAYMIDNGIEPDQYIMNRILLMHVRCGMMIDASKLFDEMPERNAVSWNTIISGYVDSGNYKEAFRLFIMMWEEYPGCSPRTFATVIRALAGLELIFPGRISSEDMKEQKRRGTVEEEGGHGDKVRR
Homology
[Close]
BLAST of Cp4.1LG01g22720 vs. Swiss-Prot
Match: PP427_ARATH (Pentatricopeptide repeat-containing protein At5g50390, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H58 PE=2 SV=1)

HSP 1 Score: 231.9 bits (590), Expect = 8.9e-60
Identity = 125/261 (47.89%), Postives = 169/261 (64.75%), Query Frame = 1 

Query: 1   MEVPL--YQNYGHDHLQRTSLSSSTSYFSHHFSGSELFRDRSLLSAYSLWSNRRKLRDSF 60
           ME+PL  YQ+   D ++ +S +     F   FS                    R+ ++ F
Sbjct: 1   MEIPLSRYQSIRLDEIRDSSSNPKVLTFPRKFS-----------------LRGRRWKNPF 60

Query: 61  CWVKCSSLEQGLRPRLKPKPSKVDRDVRKGTPPA-KETRITKSSVRICCHIEKLVLCNKF 120
             + CSS+ QGL+P+ K KP  +  +V++       +T+I+KS V IC  IEKLVLCN+F
Sbjct: 61  GRLSCSSVVQGLKPKPKLKPEPIRIEVKESKDQILDDTQISKSGVTICSQIEKLVLCNRF 120

Query: 121 RDALEMFEILELEGGYDVGNSTFDALINACIGLKSIRGAKRLCAYMIDNGIEPDQYIMNR 180
           R+A E+FEILE+   + VG ST+DAL+ ACI LKSIR  KR+  +M+ NG EP+QY+MNR
Sbjct: 121 REAFELFEILEIRCSFKVGVSTYDALVEACIRLKSIRCVKRVYGFMMSNGFEPEQYMMNR 180

Query: 181 ILLMHVRCGMMIDASKLFDEMPERNAVSWNTIISGYVDSGNYKEAFRLFIMMWEEYPGCS 240
           ILLMHV+CGM+IDA +LFDE+PERN  S+ +IISG+V+ GNY EAF LF MMWEE   C 
Sbjct: 181 ILLMHVKCGMIIDARRLFDEIPERNLYSYYSIISGFVNFGNYVEAFELFKMMWEELSDCE 240

Query: 241 PRTFATVIRALAGLELIFPGR 259
             TFA ++RA AGL  I+ G+
Sbjct: 241 THTFAVMLRASAGLGSIYVGK 244

[Close]
BLAST of Cp4.1LG01g22720 vs. Swiss-Prot
Match: PP280_ARATH (Pentatricopeptide repeat-containing protein At3g53360, mitochondrial OS=Arabidopsis thaliana GN=PCMP-E86 PE=2 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 3.4e-19
Identity = 47/143 (32.87%), Postives = 83/143 (58.04%), Query Frame = 1 

Query: 107 HIEKLVLCNKFRDALEMFEILELEGGYDVGNSTFDALINACIGLKSIRGAKRLCAYMIDN 166
           HI  L   N +R+ALE F+  +    + +   T+ +LI AC   +S+   +++  +++++
Sbjct: 37  HINSLCKSNFYREALEAFDFAQKNSSFKIRLRTYISLICACSSSRSLAQGRKIHDHILNS 96

Query: 167 GIEPDQYIMNRILLMHVRCGMMIDASKLFDEMPERNAVSWNTIISGYVDSGNYKEAFRLF 226
             + D  + N IL M+ +CG + DA ++FD MPERN VS+ ++I+GY  +G   EA RL+
Sbjct: 97  NCKYDTILNNHILSMYGKCGSLRDAREVFDFMPERNLVSYTSVITGYSQNGQGAEAIRLY 156

Query: 227 IMMWEEYPGCSPRTFATVIRALA 250
           + M +E        F ++I+A A
Sbjct: 157 LKMLQEDLVPDQFAFGSIIKACA 179

[Close]
BLAST of Cp4.1LG01g22720 vs. Swiss-Prot
Match: PP227_ARATH (Putative pentatricopeptide repeat-containing protein At3g13770, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H85 PE=3 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 8.4e-18
Identity = 48/133 (36.09%), Postives = 76/133 (57.14%), Query Frame = 1 

Query: 113 LCNKFRDALEMFEILELEGGYDVGNSTFDALINACIGLKSIRGAKRLCAYMIDNGIEPDQ 172
           LC+  R    + E+  L  G ++G   +DAL+NAC+  +++R  +R+ A+MI     P  
Sbjct: 30  LCSNGRLQEALLEMAML--GPEMGFHGYDALLNACLDKRALRDGQRVHAHMIKTRYLPAT 89

Query: 173 YIMNRILLMHVRCGMMIDASKLFDEMPERNAVSWNTIISGYVDSGNYKEAFRLFIMMWEE 232
           Y+  R+L+ + +C  + DA K+ DEMPE+N VSW  +IS Y  +G+  EA  +F  M   
Sbjct: 90  YLRTRLLIFYGKCDCLEDARKVLDEMPEKNVVSWTAMISRYSQTGHSSEALTVFAEMMRS 149

Query: 233 YPGCSPRTFATVI 246
               +  TFATV+
Sbjct: 150 DGKPNEFTFATVL 160

[Close]
BLAST of Cp4.1LG01g22720 vs. Swiss-Prot
Match: PP353_ARATH (Pentatricopeptide repeat-containing protein At4g37170 OS=Arabidopsis thaliana GN=PCMP-H5 PE=3 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 1.3e-15
Identity = 44/133 (33.08%), Postives = 76/133 (57.14%), Query Frame = 1 

Query: 108 IEKLVLCNKFRDALEMF-------EILELEG-GYDVGNSTFDALINACIGLKSIRGAKRL 167
           +E+L   N+F +A+++        E ++L G       ST+  LI  C   +++   K++
Sbjct: 48  VERLCRANRFGEAIDVLCGQKLLREAVQLLGRAKKPPASTYCNLIQVCSQTRALEEGKKV 107

Query: 168 CAYMIDNGIEPDQYIMNRILLMHVRCGMMIDASKLFDEMPERNAVSWNTIISGYVDSGNY 227
             ++  +G  P   I NR+L M+ +CG ++DA K+FDEMP R+  SWN +++GY + G  
Sbjct: 108 HEHIRTSGFVPGIVIWNRLLRMYAKCGSLVDARKVFDEMPNRDLCSWNVMVNGYAEVGLL 167

Query: 228 KEAFRLFIMMWEE 233
           +EA +LF  M E+
Sbjct: 168 EEARKLFDEMTEK 180

[Close]
BLAST of Cp4.1LG01g22720 vs. Swiss-Prot
Match: PPR8_ARATH (Pentatricopeptide repeat-containing protein At1g03540 OS=Arabidopsis thaliana GN=PCMP-E4 PE=2 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 1.3e-15
Identity = 46/155 (29.68%), Postives = 85/155 (54.84%), Query Frame = 1 

Query: 117 FRDALEMFEILELEGGYDVGNSTFDALINACIGLKSIRGAKRLCAYMIDNGIEPDQYIMN 176
           + +AL +F  +    G     STF  ++ AC  L+ ++  K +   +I NGI  +  + +
Sbjct: 245 YEEALGLFYAMHRGKGLVPDGSTFGTVLTACGNLRRLKQGKEIHGKLITNGIGSNVVVES 304

Query: 177 RILLMHVRCGMMIDASKLFDEMPERNAVSWNTIISGYVDSGNYKEAFRLFIMMWEEYPGC 236
            +L M+ +CG + +A ++F+ M ++N+VSW+ ++ GY  +G +++A  +F  M E+   C
Sbjct: 305 SLLDMYGKCGSVREARQVFNGMSKKNSVSWSALLGGYCQNGEHEKAIEIFREMEEKDLYC 364

Query: 237 SPRTFATVIRALAGLELIFPGRISSEDMKEQKRRG 272
               F TV++A AGL  +   R+  E   +  RRG
Sbjct: 365 ----FGTVLKACAGLAAV---RLGKEIHGQYVRRG 392

[Close]
BLAST of Cp4.1LG01g22720 vs. TrEMBL
Match: A0A0A0KXD9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G636580 PE=4 SV=1)

HSP 1 Score: 347.4 bits (890), Expect = 1.6e-92
Identity = 182/262 (69.47%), Postives = 205/262 (78.24%), Query Frame = 1 

Query: 1   MEVPL--YQNYGHDHLQRTSLSSSTSYFSHHFSGSELFRDRSLLSAYSLWSNRRKLRDSF 60
           ME+PL  YQNY +D LQ     +STS+FS  +S S+LF   S LS      N RK R+SF
Sbjct: 3   MELPLSRYQNYVYDRLQ----CNSTSFFSLRYSDSDLFTKTSFLS------NPRKYRNSF 62

Query: 61  CWVKCSSLEQGLRPRLKP--KPSKVDRDVRKGTPPAKETRITKSSVRICCHIEKLVLCNK 120
           CW+KCSS EQGLRPR +P  KPSK+D   RK TP  KET + KSSV IC  IEKLVLC K
Sbjct: 63  CWIKCSSFEQGLRPRPRPQPKPSKLDVGDRKETP-LKETHVKKSSVGICSQIEKLVLCKK 122

Query: 121 FRDALEMFEILELEGGYDVGNSTFDALINACIGLKSIRGAKRLCAYMIDNGIEPDQYIMN 180
           +RDALEMFEI ELE G+ VG ST+DALINACIGLKSIRG KRLC YM+DNG EPDQY+ N
Sbjct: 123 YRDALEMFEIFELEDGFHVGYSTYDALINACIGLKSIRGVKRLCNYMVDNGFEPDQYMRN 182

Query: 181 RILLMHVRCGMMIDASKLFDEMPERNAVSWNTIISGYVDSGNYKEAFRLFIMMWEEYPGC 240
           R+LLMHV+CGMMIDA +LFDEMP RNAVSW TIISGYVDSGNY EAFRLFI+M EE+  C
Sbjct: 183 RVLLMHVKCGMMIDACRLFDEMPARNAVSWGTIISGYVDSGNYVEAFRLFILMREEFYDC 242

Query: 241 SPRTFATVIRALAGLELIFPGR 259
            PRTFAT+IRA AGLE+IFPGR
Sbjct: 243 GPRTFATMIRASAGLEIIFPGR 253

[Close]
BLAST of Cp4.1LG01g22720 vs. TrEMBL
Match: A0A0D2RJ23_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_008G205900 PE=4 SV=1)

HSP 1 Score: 279.3 bits (713), Expect = 5.4e-72
Identity = 145/246 (58.94%), Postives = 178/246 (72.36%), Query Frame = 1 

Query: 15  QRTSLSSSTSYFSHHFSGSELFRDRSLLSAYSLWSNRRKLRDSFCWVKCSSLEQGLRPRL 74
           Q  SL    + F    S  E+FR + L S Y    NRRK  +    +KC SLEQGL+PR 
Sbjct: 9   QSISLDKIQNSFRFPSSIHEVFRTKPLFSDYCFRFNRRKCGNPCDKIKCFSLEQGLQPRR 68

Query: 75  -KPKPSK-VDRDVRKGTPPAKETRITKSSVRICCHIEKLVLCNKFRDALEMFEILELEGG 134
            KPKPS+  D D+++     +ET + + SV IC  IEKL  CN++R+ALE+FEILELEGG
Sbjct: 69  PKPKPSRNTDSDLKE----TEETHVKRPSVGICSQIEKLAFCNRYREALELFEILELEGG 128

Query: 135 YDVGNSTFDALINACIGLKSIRGAKRLCAYMIDNGIEPDQYIMNRILLMHVRCGMMIDAS 194
           +DVG ST+DAL++ACIGL S+R  KR+ +YMI NG EPDQY+ NR+LLMHV+CGMMIDA 
Sbjct: 129 FDVGLSTYDALVSACIGLGSVRAVKRVFSYMISNGFEPDQYMSNRVLLMHVKCGMMIDAR 188

Query: 195 KLFDEMPERNAVSWNTIISGYVDSGNYKEAFRLFIMMWEEYPGCSPRTFATVIRALAGLE 254
            LFDEMPERN VSWNTII+G VD G+Y EAFRLF++MWEE+  C  RT AT+IRA AGLE
Sbjct: 189 SLFDEMPERNLVSWNTIIAGLVDVGDYFEAFRLFLLMWEEFSDCGSRTIATMIRASAGLE 248

Query: 255 LIFPGR 259
           LI  GR
Sbjct: 249 LISVGR 250

[Close]
BLAST of Cp4.1LG01g22720 vs. TrEMBL
Match: B9RAG6_RICCO (Pentatricopeptide repeat-containing protein, putative OS=Ricinus communis GN=RCOM_1506360 PE=4 SV=1)

HSP 1 Score: 278.1 bits (710), Expect = 1.2e-71
Identity = 145/241 (60.17%), Postives = 178/241 (73.86%), Query Frame = 1 

Query: 18  SLSSSTSYFSHHFSGSELFRDRSLLSAYSLWSNRRKLRDSFCWVKCSSLEQGLRPRLKPK 77
           S SSS+S  ++H      F+     S Y    N RK R+ F   +C SL++GL+PR KPK
Sbjct: 56  SSSSSSSSSTNHRG----FKQIKFFSLYRFSFNSRKWRNPFAINQCCSLDRGLQPRPKPK 115

Query: 78  PSKVDRDVRKGTPPAKETRITKSSVRICCHIEKLVLCNKFRDALEMFEILELEGGYDVGN 137
           PSKVD DV +GT   K+TRI K S RIC  IEKLVL  K+R+ALE+FEILEL+GG+DVG+
Sbjct: 116 PSKVDIDVEEGTN-FKDTRIKKPSARICSQIEKLVLHGKYREALELFEILELDGGFDVGS 175

Query: 138 STFDALINACIGLKSIRGAKRLCAYMIDNGIEPDQYIMNRILLMHVRCGMMIDASKLFDE 197
           ST+DAL++ACIGL+SI G KR+  YM+ NG EPDQY+ NR+LL+ V+CGMMI A K FDE
Sbjct: 176 STYDALVSACIGLRSIPGVKRVLNYMLSNGFEPDQYMANRVLLVQVKCGMMIHARKWFDE 235

Query: 198 MPERNAVSWNTIISGYVDSGNYKEAFRLFIMMWEEYPGCSPRTFATVIRALAGLELIFPG 257
           MPERN VSWNTIISG VD G+YKEAFRLF++MWEE+     RTFAT+I+A AGL  I  G
Sbjct: 236 MPERNLVSWNTIISGLVDMGDYKEAFRLFLIMWEEFSDAGSRTFATMIQASAGLGWISIG 291

Query: 258 R 259
           R
Sbjct: 296 R 291

[Close]
BLAST of Cp4.1LG01g22720 vs. TrEMBL
Match: A0A061FYX7_THECC (Pentatricopeptide repeat superfamily protein OS=Theobroma cacao GN=TCM_014635 PE=4 SV=1)

HSP 1 Score: 277.3 bits (708), Expect = 2.0e-71
Identity = 147/259 (56.76%), Postives = 184/259 (71.04%), Query Frame = 1 

Query: 1   MEVPLYQNYGHDHLQRTSLSSSTSYFSHHFSGSELFRDRSLLSAYSLWSNRRKLRDSFCW 60
           ME+PL Q   +  +    + +S S+ S   S +++F  +   S Y    +RRK    F  
Sbjct: 1   MEIPLAQ---YQCMTLDQMQTSCSFPS---SNNKVFTTKPFFSGYCFRFDRRKRSYPFDK 60

Query: 61  VKCSSLEQGLRPRL-KPKPSKVDRDVRKGTPPAKETRITKSSVRICCHIEKLVLCNKFRD 120
           + C SLE GL+PR  KPKPS+      K T   +ET++ K SV +C  IEKL LCN++R+
Sbjct: 61  IMCFSLEHGLQPRRPKPKPSRNTNPEMKET---EETQVRKPSVGLCSQIEKLALCNRYRE 120

Query: 121 ALEMFEILELEGGYDVGNSTFDALINACIGLKSIRGAKRLCAYMIDNGIEPDQYIMNRIL 180
           ALE+FEILELEGG+DVG ST+DAL++ACIGL S+R  KR+  YMI+NG EPDQY+ NR+L
Sbjct: 121 ALELFEILELEGGFDVGLSTYDALVSACIGLGSVRAVKRVFNYMINNGFEPDQYMSNRVL 180

Query: 181 LMHVRCGMMIDASKLFDEMPERNAVSWNTIISGYVDSGNYKEAFRLFIMMWEEYPGCSPR 240
           LMHV+CGMMIDA KLFDEMPERN VSWNTII G VD G+Y EAFRLF++MWEE+  C  R
Sbjct: 181 LMHVKCGMMIDARKLFDEMPERNLVSWNTIIVGLVDFGDYLEAFRLFLIMWEEFSDCGSR 240

Query: 241 TFATVIRALAGLELIFPGR 259
           TFAT+IRA AGLELI  GR
Sbjct: 241 TFATMIRASAGLELISVGR 250

[Close]
BLAST of Cp4.1LG01g22720 vs. TrEMBL
Match: A0A067KF79_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11296 PE=4 SV=1)

HSP 1 Score: 270.4 bits (690), Expect = 2.5e-69
Identity = 145/260 (55.77%), Postives = 180/260 (69.23%), Query Frame = 1 

Query: 1   MEVPL--YQNYGHDHLQRTSLSSSTSYFSHHFSGSELFRDRSLLSAYSLWSNRRKLRDSF 60
           ME+PL  YQN   D +Q  S  S     S H S    F  + L S Y    +R K R  F
Sbjct: 1   MEIPLLRYQNILFDQIQNNS--SLPFSVSEHKS----FEQKILFSLYRFSFDRIKWRSPF 60

Query: 61  CWVKCSSLEQGLRPRLKPKPSKVDRDVRKGTPPAKETRITKSSVRICCHIEKLVLCNKFR 120
             ++C SL+QGL PR KPKPSKVD +V      +++T+I + S R+C  IEKLVL  ++R
Sbjct: 61  TKIRCCSLDQGLHPRPKPKPSKVDIEVEVAR--SRDTQIKRPSRRLCSQIEKLVLYGRYR 120

Query: 121 DALEMFEILELEGGYDVGNSTFDALINACIGLKSIRGAKRLCAYMIDNGIEPDQYIMNRI 180
           DALE+FEI EL GG+DV +ST+DAL++ACIGL+SI G KR+  YM  NG EPDQY+ NR+
Sbjct: 121 DALELFEIFELNGGFDVESSTYDALVSACIGLRSISGVKRVFNYMTSNGFEPDQYMSNRV 180

Query: 181 LLMHVRCGMMIDASKLFDEMPERNAVSWNTIISGYVDSGNYKEAFRLFIMMWEEYPGCSP 240
           LLMHV+CGM+IDA K FDEMPERN VSWNTII+G VD  +Y+EAFRLF+ MWEE+     
Sbjct: 181 LLMHVKCGMIIDARKWFDEMPERNLVSWNTIIAGLVDIRDYREAFRLFLFMWEEFSDAES 240

Query: 241 RTFATVIRALAGLELIFPGR 259
           RTFAT+I+A AGL LI  GR
Sbjct: 241 RTFATMIQAAAGLGLISIGR 252

[Close]
BLAST of Cp4.1LG01g22720 vs. TAIR10
Match: AT5G50390.1 (AT5G50390.1 Pentatricopeptide repeat (PPR-like) superfamily protein)

HSP 1 Score: 231.9 bits (590), Expect = 5.0e-61
Identity = 125/261 (47.89%), Postives = 169/261 (64.75%), Query Frame = 1 

Query: 1   MEVPL--YQNYGHDHLQRTSLSSSTSYFSHHFSGSELFRDRSLLSAYSLWSNRRKLRDSF 60
           ME+PL  YQ+   D ++ +S +     F   FS                    R+ ++ F
Sbjct: 1   MEIPLSRYQSIRLDEIRDSSSNPKVLTFPRKFS-----------------LRGRRWKNPF 60

Query: 61  CWVKCSSLEQGLRPRLKPKPSKVDRDVRKGTPPA-KETRITKSSVRICCHIEKLVLCNKF 120
             + CSS+ QGL+P+ K KP  +  +V++       +T+I+KS V IC  IEKLVLCN+F
Sbjct: 61  GRLSCSSVVQGLKPKPKLKPEPIRIEVKESKDQILDDTQISKSGVTICSQIEKLVLCNRF 120

Query: 121 RDALEMFEILELEGGYDVGNSTFDALINACIGLKSIRGAKRLCAYMIDNGIEPDQYIMNR 180
           R+A E+FEILE+   + VG ST+DAL+ ACI LKSIR  KR+  +M+ NG EP+QY+MNR
Sbjct: 121 REAFELFEILEIRCSFKVGVSTYDALVEACIRLKSIRCVKRVYGFMMSNGFEPEQYMMNR 180

Query: 181 ILLMHVRCGMMIDASKLFDEMPERNAVSWNTIISGYVDSGNYKEAFRLFIMMWEEYPGCS 240
           ILLMHV+CGM+IDA +LFDE+PERN  S+ +IISG+V+ GNY EAF LF MMWEE   C 
Sbjct: 181 ILLMHVKCGMIIDARRLFDEIPERNLYSYYSIISGFVNFGNYVEAFELFKMMWEELSDCE 240

Query: 241 PRTFATVIRALAGLELIFPGR 259
             TFA ++RA AGL  I+ G+
Sbjct: 241 THTFAVMLRASAGLGSIYVGK 244

[Close]
BLAST of Cp4.1LG01g22720 vs. TAIR10
Match: AT3G53360.1 (AT3G53360.1 Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 97.1 bits (240), Expect = 1.9e-20
Identity = 47/143 (32.87%), Postives = 83/143 (58.04%), Query Frame = 1 

Query: 107 HIEKLVLCNKFRDALEMFEILELEGGYDVGNSTFDALINACIGLKSIRGAKRLCAYMIDN 166
           HI  L   N +R+ALE F+  +    + +   T+ +LI AC   +S+   +++  +++++
Sbjct: 37  HINSLCKSNFYREALEAFDFAQKNSSFKIRLRTYISLICACSSSRSLAQGRKIHDHILNS 96

Query: 167 GIEPDQYIMNRILLMHVRCGMMIDASKLFDEMPERNAVSWNTIISGYVDSGNYKEAFRLF 226
             + D  + N IL M+ +CG + DA ++FD MPERN VS+ ++I+GY  +G   EA RL+
Sbjct: 97  NCKYDTILNNHILSMYGKCGSLRDAREVFDFMPERNLVSYTSVITGYSQNGQGAEAIRLY 156

Query: 227 IMMWEEYPGCSPRTFATVIRALA 250
           + M +E        F ++I+A A
Sbjct: 157 LKMLQEDLVPDQFAFGSIIKACA 179

[Close]
BLAST of Cp4.1LG01g22720 vs. TAIR10
Match: AT3G13770.1 (AT3G13770.1 Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 92.4 bits (228), Expect = 4.7e-19
Identity = 48/133 (36.09%), Postives = 76/133 (57.14%), Query Frame = 1 

Query: 113 LCNKFRDALEMFEILELEGGYDVGNSTFDALINACIGLKSIRGAKRLCAYMIDNGIEPDQ 172
           LC+  R    + E+  L  G ++G   +DAL+NAC+  +++R  +R+ A+MI     P  
Sbjct: 30  LCSNGRLQEALLEMAML--GPEMGFHGYDALLNACLDKRALRDGQRVHAHMIKTRYLPAT 89

Query: 173 YIMNRILLMHVRCGMMIDASKLFDEMPERNAVSWNTIISGYVDSGNYKEAFRLFIMMWEE 232
           Y+  R+L+ + +C  + DA K+ DEMPE+N VSW  +IS Y  +G+  EA  +F  M   
Sbjct: 90  YLRTRLLIFYGKCDCLEDARKVLDEMPEKNVVSWTAMISRYSQTGHSSEALTVFAEMMRS 149

Query: 233 YPGCSPRTFATVI 246
               +  TFATV+
Sbjct: 150 DGKPNEFTFATVL 160

[Close]
BLAST of Cp4.1LG01g22720 vs. TAIR10
Match: AT4G37170.1 (AT4G37170.1 Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 85.1 bits (209), Expect = 7.6e-17
Identity = 44/133 (33.08%), Postives = 76/133 (57.14%), Query Frame = 1 

Query: 108 IEKLVLCNKFRDALEMF-------EILELEG-GYDVGNSTFDALINACIGLKSIRGAKRL 167
           +E+L   N+F +A+++        E ++L G       ST+  LI  C   +++   K++
Sbjct: 48  VERLCRANRFGEAIDVLCGQKLLREAVQLLGRAKKPPASTYCNLIQVCSQTRALEEGKKV 107

Query: 168 CAYMIDNGIEPDQYIMNRILLMHVRCGMMIDASKLFDEMPERNAVSWNTIISGYVDSGNY 227
             ++  +G  P   I NR+L M+ +CG ++DA K+FDEMP R+  SWN +++GY + G  
Sbjct: 108 HEHIRTSGFVPGIVIWNRLLRMYAKCGSLVDARKVFDEMPNRDLCSWNVMVNGYAEVGLL 167

Query: 228 KEAFRLFIMMWEE 233
           +EA +LF  M E+
Sbjct: 168 EEARKLFDEMTEK 180

[Close]
BLAST of Cp4.1LG01g22720 vs. TAIR10
Match: AT1G03540.1 (AT1G03540.1 Pentatricopeptide repeat (PPR-like) superfamily protein)

HSP 1 Score: 85.1 bits (209), Expect = 7.6e-17
Identity = 46/155 (29.68%), Postives = 85/155 (54.84%), Query Frame = 1 

Query: 117 FRDALEMFEILELEGGYDVGNSTFDALINACIGLKSIRGAKRLCAYMIDNGIEPDQYIMN 176
           + +AL +F  +    G     STF  ++ AC  L+ ++  K +   +I NGI  +  + +
Sbjct: 245 YEEALGLFYAMHRGKGLVPDGSTFGTVLTACGNLRRLKQGKEIHGKLITNGIGSNVVVES 304

Query: 177 RILLMHVRCGMMIDASKLFDEMPERNAVSWNTIISGYVDSGNYKEAFRLFIMMWEEYPGC 236
            +L M+ +CG + +A ++F+ M ++N+VSW+ ++ GY  +G +++A  +F  M E+   C
Sbjct: 305 SLLDMYGKCGSVREARQVFNGMSKKNSVSWSALLGGYCQNGEHEKAIEIFREMEEKDLYC 364

Query: 237 SPRTFATVIRALAGLELIFPGRISSEDMKEQKRRG 272
               F TV++A AGL  +   R+  E   +  RRG
Sbjct: 365 ----FGTVLKACAGLAAV---RLGKEIHGQYVRRG 392

[Close]
BLAST of Cp4.1LG01g22720 vs. NCBI nr
Match: gi|659118821|ref|XP_008459324.1| (PREDICTED: pentatricopeptide repeat-containing protein At5g50390, chloroplastic [Cucumis melo])

HSP 1 Score: 353.2 bits (905), Expect = 4.2e-94
Identity = 184/260 (70.77%), Postives = 204/260 (78.46%), Query Frame = 1 

Query: 1   MEVPL--YQNYGHDHLQRTSLSSSTSYFSHHFSGSELFRDRSLLSAYSLWSNRRKLRDSF 60
           ME+PL  YQNY +D LQ      ST YFS  +S S LF   S LS      NRRK R+SF
Sbjct: 3   MELPLSRYQNYVYDRLQ----CYSTPYFSLRYSDSHLFMKTSFLS------NRRKCRNSF 62

Query: 61  CWVKCSSLEQGLRPRLKPKPSKVDRDVRKGTPPAKETRITKSSVRICCHIEKLVLCNKFR 120
           CWVKCSS EQGLRPR +PKPSK+D  VRK  P  KET + KSSV IC  IEKLVLC ++R
Sbjct: 63  CWVKCSSFEQGLRPRPQPKPSKLDVGVRKEAP-LKETPVRKSSVGICSQIEKLVLCKQYR 122

Query: 121 DALEMFEILELEGGYDVGNSTFDALINACIGLKSIRGAKRLCAYMIDNGIEPDQYIMNRI 180
           DALEMFEI ELE G+ VGNST+DALINACIGLKSIRG KRL  YM+DNG EPDQY+ NR+
Sbjct: 123 DALEMFEIFELEDGFHVGNSTYDALINACIGLKSIRGVKRLFNYMVDNGFEPDQYMRNRV 182

Query: 181 LLMHVRCGMMIDASKLFDEMPERNAVSWNTIISGYVDSGNYKEAFRLFIMMWEEYPGCSP 240
           LLMHV+CGMMIDA +LFDEMPERNAVSW+TIISGYVDSGNY EAFRLFI+MWEE  GC P
Sbjct: 183 LLMHVKCGMMIDACRLFDEMPERNAVSWSTIISGYVDSGNYVEAFRLFILMWEESYGCGP 242

Query: 241 RTFATVIRALAGLELIFPGR 259
           RT AT+IRA AGLE+IF GR
Sbjct: 243 RTLATMIRASAGLEIIFVGR 251

[Close]
BLAST of Cp4.1LG01g22720 vs. NCBI nr
Match: gi|449461943|ref|XP_004148701.1| (PREDICTED: pentatricopeptide repeat-containing protein At5g50390, chloroplastic [Cucumis sativus])

HSP 1 Score: 347.4 bits (890), Expect = 2.3e-92
Identity = 182/262 (69.47%), Postives = 205/262 (78.24%), Query Frame = 1 

Query: 1   MEVPL--YQNYGHDHLQRTSLSSSTSYFSHHFSGSELFRDRSLLSAYSLWSNRRKLRDSF 60
           ME+PL  YQNY +D LQ     +STS+FS  +S S+LF   S LS      N RK R+SF
Sbjct: 3   MELPLSRYQNYVYDRLQ----CNSTSFFSLRYSDSDLFTKTSFLS------NPRKYRNSF 62

Query: 61  CWVKCSSLEQGLRPRLKP--KPSKVDRDVRKGTPPAKETRITKSSVRICCHIEKLVLCNK 120
           CW+KCSS EQGLRPR +P  KPSK+D   RK TP  KET + KSSV IC  IEKLVLC K
Sbjct: 63  CWIKCSSFEQGLRPRPRPQPKPSKLDVGDRKETP-LKETHVKKSSVGICSQIEKLVLCKK 122

Query: 121 FRDALEMFEILELEGGYDVGNSTFDALINACIGLKSIRGAKRLCAYMIDNGIEPDQYIMN 180
           +RDALEMFEI ELE G+ VG ST+DALINACIGLKSIRG KRLC YM+DNG EPDQY+ N
Sbjct: 123 YRDALEMFEIFELEDGFHVGYSTYDALINACIGLKSIRGVKRLCNYMVDNGFEPDQYMRN 182

Query: 181 RILLMHVRCGMMIDASKLFDEMPERNAVSWNTIISGYVDSGNYKEAFRLFIMMWEEYPGC 240
           R+LLMHV+CGMMIDA +LFDEMP RNAVSW TIISGYVDSGNY EAFRLFI+M EE+  C
Sbjct: 183 RVLLMHVKCGMMIDACRLFDEMPARNAVSWGTIISGYVDSGNYVEAFRLFILMREEFYDC 242

Query: 241 SPRTFATVIRALAGLELIFPGR 259
            PRTFAT+IRA AGLE+IFPGR
Sbjct: 243 GPRTFATMIRASAGLEIIFPGR 253

[Close]
BLAST of Cp4.1LG01g22720 vs. NCBI nr
Match: gi|694402575|ref|XP_009376276.1| (PREDICTED: pentatricopeptide repeat-containing protein At5g50390, chloroplastic-like [Pyrus x bretschneideri])

HSP 1 Score: 289.7 bits (740), Expect = 5.7e-75
Identity = 152/264 (57.58%), Postives = 193/264 (73.11%), Query Frame = 1 

Query: 1   MEVPL--YQNYGHDHLQRTSLSSSTSYFSHHFSGSELFRDRSL--LSAYSLWSNRRKLRD 60
           ME+P+  YQN   D +Q    S S+ +FS  FS  + FR RSL     Y    NRRK R+
Sbjct: 1   MEIPVLRYQNLASDQIQ----SGSSFHFS--FSDPKFFRRRSLSLFYGYCFQFNRRKWRN 60

Query: 61  SFCW--VKCSSLEQGLRPRLKPKPSKVDRDVRKGTPPAKETRITKSSVRICCHIEKLVLC 120
           S     ++CSS+EQ L+PR KP PSK++ D  KG P  ++T+I K +  +C  IEKLVLC
Sbjct: 61  SLLLPHIRCSSVEQELKPRPKPVPSKIEVDEPKGAP-LEDTQIVKRNTGLCSQIEKLVLC 120

Query: 121 NKFRDALEMFEILELEGGYDVGNSTFDALINACIGLKSIRGAKRLCAYMIDNGIEPDQYI 180
           N++R+ALE+FEILE EGGY++  ST+DAL++ACI LKSIRG KR+  YMI+NG E DQY 
Sbjct: 121 NRYREALELFEILEFEGGYELAGSTYDALVSACISLKSIRGVKRVSNYMINNGFELDQYT 180

Query: 181 MNRILLMHVRCGMMIDASKLFDEMPERNAVSWNTIISGYVDSGNYKEAFRLFIMMWEEYP 240
            NR+LLMHV+CGMMIDA +LFDEMPERN VSWNTII G VDSGN++EAF+LF++MW+E+ 
Sbjct: 181 RNRVLLMHVKCGMMIDARRLFDEMPERNQVSWNTIIGGLVDSGNFREAFQLFLIMWQEFS 240

Query: 241 GCSPRTFATVIRALAGLELIFPGR 259
               RTFAT+IRA AGL LIF G+
Sbjct: 241 DAGSRTFATMIRASAGLGLIFAGK 257

[Close]
BLAST of Cp4.1LG01g22720 vs. NCBI nr
Match: gi|657975034|ref|XP_008379359.1| (PREDICTED: pentatricopeptide repeat-containing protein At5g50390, chloroplastic-like [Malus domestica])

HSP 1 Score: 281.2 bits (718), Expect = 2.0e-72
Identity = 148/262 (56.49%), Postives = 186/262 (70.99%), Query Frame = 1 

Query: 1   MEVPL--YQNYGHDHLQRTSLSSSTSYFSHHFSGSELFRDRSL--LSAYSLWSNRRKLRD 60
           ME+P+  YQN   D +Q    S S+ +FS  FS  +  R RSL   S Y    NR K R+
Sbjct: 1   MEIPVLRYQNLALDQIQ----SGSSFHFS--FSDPKFXRRRSLSLFSGYCFQFNRXKWRN 60

Query: 61  SFCWVKCSSLEQGLRPRLKPKPSKVDRDVRKGTPPAKETRITKSSVRICCHIEKLVLCNK 120
               ++CSS+EQ L+PR KP PSK+  D   G P  ++T+I K +  +C  IEKLVLCN+
Sbjct: 61  PLPHIRCSSVEQELKPRPKPVPSKIXVDEPXGAP-LEDTQIVKRNTGLCSQIEKLVLCNR 120

Query: 121 FRDALEMFEILELEGGYDVGNSTFDALINACIGLKSIRGAKRLCAYMIDNGIEPDQYIMN 180
           +R+ALE+FEILE EGGY++  ST+DAL++ACI LKSIRG KR+  YMI NG E DQY+ N
Sbjct: 121 YREALELFEILEFEGGYELAGSTYDALVSACIXLKSIRGVKRVSNYMISNGFELDQYMRN 180

Query: 181 RILLMHVRCGMMIDASKLFDEMPERNAVSWNTIISGYVDSGNYKEAFRLFIMMWEEYPGC 240
           R+LLMHV+CGMMIDA +LFDEMP RN VSWNTII G VDSGN+ EAFRLF++MW+E+   
Sbjct: 181 RVLLMHVKCGMMIDARRLFDEMPVRNQVSWNTIIGGLVDSGNFMEAFRLFLIMWQEFSDA 240

Query: 241 SPRTFATVIRALAGLELIFPGR 259
             RTFAT+IRA AG  LIF G+
Sbjct: 241 GSRTFATMIRASAGFGLIFAGK 255

[Close]
BLAST of Cp4.1LG01g22720 vs. NCBI nr
Match: gi|1000985009|ref|XP_015580198.1| (PREDICTED: pentatricopeptide repeat-containing protein At5g50390, chloroplastic [Ricinus communis])

HSP 1 Score: 280.8 bits (717), Expect = 2.7e-72
Identity = 151/265 (56.98%), Postives = 189/265 (71.32%), Query Frame = 1 

Query: 1   MEVPL--YQNYGHDHLQRT-----SLSSSTSYFSHHFSGSELFRDRSLLSAYSLWSNRRK 60
           M++PL  YQ+     ++ T     S SSS+S  ++H      F+     S Y    N RK
Sbjct: 1   MDIPLQRYQSISLGQIRNTCSFLPSSSSSSSSSTNHRG----FKQIKFFSLYRFSFNSRK 60

Query: 61  LRDSFCWVKCSSLEQGLRPRLKPKPSKVDRDVRKGTPPAKETRITKSSVRICCHIEKLVL 120
            R+ F   +C SL++GL+PR KPKPSKVD DV +GT   K+TRI K S RIC  IEKLVL
Sbjct: 61  WRNPFAINQCCSLDRGLQPRPKPKPSKVDIDVEEGTN-FKDTRIKKPSARICSQIEKLVL 120

Query: 121 CNKFRDALEMFEILELEGGYDVGNSTFDALINACIGLKSIRGAKRLCAYMIDNGIEPDQY 180
             K+R+ALE+FEILEL+GG+DVG+ST+DAL++ACIGL+SI G KR+  YM+ NG EPDQY
Sbjct: 121 HGKYREALELFEILELDGGFDVGSSTYDALVSACIGLRSIPGVKRVLNYMLSNGFEPDQY 180

Query: 181 IMNRILLMHVRCGMMIDASKLFDEMPERNAVSWNTIISGYVDSGNYKEAFRLFIMMWEEY 240
           + NR+LL+ V+CGMMI A K FDEMPERN VSWNTIISG VD G+YKEAFRLF++MWEE+
Sbjct: 181 MANRVLLVQVKCGMMIHARKWFDEMPERNLVSWNTIISGLVDMGDYKEAFRLFLIMWEEF 240

Query: 241 PGCSPRTFATVIRALAGLELIFPGR 259
                RTFAT+I+A AGL  I  GR
Sbjct: 241 SDAGSRTFATMIQASAGLGWISIGR 260

The following BLAST results are available for this feature:
BLAST of Cp4.1LG01g22720 vs. Swiss-Prot
Match NameE-valueIdentityDescription
PP427_ARATH8.9e-6047.89Pentatricopeptide repeat-containing protein At5g50390, chloroplastic OS=Arabidop... [more]
PP280_ARATH3.4e-1932.87Pentatricopeptide repeat-containing protein At3g53360, mitochondrial OS=Arabidop... [more]
PP227_ARATH8.4e-1836.09Putative pentatricopeptide repeat-containing protein At3g13770, mitochondrial OS... [more]
PP353_ARATH1.3e-1533.08Pentatricopeptide repeat-containing protein At4g37170 OS=Arabidopsis thaliana GN... [more]
PPR8_ARATH1.3e-1529.68Pentatricopeptide repeat-containing protein At1g03540 OS=Arabidopsis thaliana GN... [more]
BLAST of Cp4.1LG01g22720 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KXD9_CUCSA1.6e-9269.47Uncharacterized protein OS=Cucumis sativus GN=Csa_5G636580 PE=4 SV=1[more]
A0A0D2RJ23_GOSRA5.4e-7258.94Uncharacterized protein OS=Gossypium raimondii GN=B456_008G205900 PE=4 SV=1[more]
B9RAG6_RICCO1.2e-7160.17Pentatricopeptide repeat-containing protein, putative OS=Ricinus communis GN=RCO... [more]
A0A061FYX7_THECC2.0e-7156.76Pentatricopeptide repeat superfamily protein OS=Theobroma cacao GN=TCM_014635 PE... [more]
A0A067KF79_JATCU2.5e-6955.77Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11296 PE=4 SV=1[more]
BLAST of Cp4.1LG01g22720 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G50390.15.0e-6147.89 Pentatricopeptide repeat (PPR-like) superfamily protein[more]
AT3G53360.11.9e-2032.87 Tetratricopeptide repeat (TPR)-like superfamily protein[more]
AT3G13770.14.7e-1936.09 Pentatricopeptide repeat (PPR) superfamily protein[more]
AT4G37170.17.6e-1733.08 Pentatricopeptide repeat (PPR) superfamily protein[more]
AT1G03540.17.6e-1729.68 Pentatricopeptide repeat (PPR-like) superfamily protein[more]
BLAST of Cp4.1LG01g22720 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659118821|ref|XP_008459324.1|4.2e-9470.77PREDICTED: pentatricopeptide repeat-containing protein At5g50390, chloroplastic ... [more]
gi|449461943|ref|XP_004148701.1|2.3e-9269.47PREDICTED: pentatricopeptide repeat-containing protein At5g50390, chloroplastic ... [more]
gi|694402575|ref|XP_009376276.1|5.7e-7557.58PREDICTED: pentatricopeptide repeat-containing protein At5g50390, chloroplastic-... [more]
gi|657975034|ref|XP_008379359.1|2.0e-7256.49PREDICTED: pentatricopeptide repeat-containing protein At5g50390, chloroplastic-... [more]
gi|1000985009|ref|XP_015580198.1|2.7e-7256.98PREDICTED: pentatricopeptide repeat-containing protein At5g50390, chloroplastic ... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR002885Pentatricopeptide_repeat
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0008152 metabolic process
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0006412 translation
cellular_component GO:0005575 cellular_component
cellular_component GO:0005840 ribosome
molecular_function GO:0003674 molecular_function
molecular_function GO:0005515 protein binding
molecular_function GO:0008270 zinc ion binding
molecular_function GO:0008568 microtubule-severing ATPase activity
molecular_function GO:0003735 structural constituent of ribosome
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG01g22720.1Cp4.1LG01g22720.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002885Pentatricopeptide repeatPFAMPF13041PPR_2coord: 202..249
score: 4.
IPR002885Pentatricopeptide repeatTIGRFAMsTIGR00756TIGR00756coord: 204..238
score: 1.7E-6coord: 139..171
score: 3.
IPR002885Pentatricopeptide repeatPROFILEPS51375PPRcoord: 171..201
score: 7.673coord: 136..170
score: 8.462coord: 202..232
score: 10
NoneNo IPR availablePANTHERPTHR24015FAMILY NOT NAMEDcoord: 99..258
score: 8.1E
NoneNo IPR availablePANTHERPTHR24015:SF151SUBFAMILY NOT NAMEDcoord: 99..258
score: 8.1E

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG01g22720Cucsa.158250Cucumber (Gy14) v1cgycpeB0425
Cp4.1LG01g22720CmaCh04G027660Cucurbita maxima (Rimu)cmacpeB721
Cp4.1LG01g22720CmoCh04G028970Cucurbita moschata (Rifu)cmocpeB673
Cp4.1LG01g22720Cla010324Watermelon (97103) v1cpewmB381
Cp4.1LG01g22720Csa5G636580Cucumber (Chinese Long) v2cpecuB415
Cp4.1LG01g22720ClCG09G018170Watermelon (Charleston Gray)cpewcgB344
Cp4.1LG01g22720CSPI05G28970Wild cucumber (PI 183967)cpecpiB414
Cp4.1LG01g22720Lsi02G014780Bottle gourd (USVL1VR-Ls)cpelsiB336
Cp4.1LG01g22720CsaV3_5G038080Cucumber (Chinese Long) v3cpecucB0517
Cp4.1LG01g22720Bhi06G000331Wax gourdcpewgoB0502
Cp4.1LG01g22720CsGy5G028370Cucumber (Gy14) v2cgybcpeB625
Cp4.1LG01g22720Carg04380Silver-seed gourdcarcpeB0965
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Cp4.1LG01g22720Cp4.1LG13g08380Cucurbita pepo (Zucchini)cpecpeB199
The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG01g22720Wax gourdcpewgoB0552
Cp4.1LG01g22720Wax gourdcpewgoB0573
Cp4.1LG01g22720Cucurbita pepo (Zucchini)cpecpeB039
Cp4.1LG01g22720Cucurbita pepo (Zucchini)cpecpeB347
Cp4.1LG01g22720Cucurbita pepo (Zucchini)cpecpeB391
Cp4.1LG01g22720Cucurbita pepo (Zucchini)cpecpeB397
Cp4.1LG01g22720Cucumber (Gy14) v1cgycpeB0255
Cp4.1LG01g22720Cucurbita maxima (Rimu)cmacpeB317
Cp4.1LG01g22720Cucurbita maxima (Rimu)cmacpeB479
Cp4.1LG01g22720Cucurbita moschata (Rifu)cmocpeB279
Cp4.1LG01g22720Cucurbita moschata (Rifu)cmocpeB437
Cp4.1LG01g22720Wild cucumber (PI 183967)cpecpiB380
Cp4.1LG01g22720Cucumber (Chinese Long) v2cpecuB380
Cp4.1LG01g22720Bottle gourd (USVL1VR-Ls)cpelsiB330
Cp4.1LG01g22720Watermelon (Charleston Gray)cpewcgB387
Cp4.1LG01g22720Watermelon (97103) v1cpewmB449
Cp4.1LG01g22720Melon (DHL92) v3.5.1cpemeB358
Cp4.1LG01g22720Melon (DHL92) v3.5.1cpemeB386
Cp4.1LG01g22720Melon (DHL92) v3.5.1cpemeB391
Cp4.1LG01g22720Cucumber (Gy14) v2cgybcpeB643
Cp4.1LG01g22720Melon (DHL92) v3.6.1cpemedB418
Cp4.1LG01g22720Melon (DHL92) v3.6.1cpemedB447
Cp4.1LG01g22720Melon (DHL92) v3.6.1cpemedB455
Cp4.1LG01g22720Melon (DHL92) v3.6.1cpemedB474
Cp4.1LG01g22720Silver-seed gourdcarcpeB0070
Cp4.1LG01g22720Silver-seed gourdcarcpeB0374
Cp4.1LG01g22720Silver-seed gourdcarcpeB0612
Cp4.1LG01g22720Cucumber (Chinese Long) v3cpecucB0472
Cp4.1LG01g22720Cucumber (Chinese Long) v3cpecucB0495
Cp4.1LG01g22720Cucumber (Chinese Long) v3cpecucB0534