Cp4.1LG01g21040 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG01g21040
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionHexosyltransferase
LocationCp4.1LG01 : 17782650 .. 17782907 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATGTGTGAAAATTTGCTAATATTGTCTTGAATTTCTTCTGAAGCAGTGAAGAAACAAGCAAGAGAAGGTTCCAAAGAATTAAAGATTTCAAAGTTGTTGAGAGGGCCCTCCATATTCCTTTTCGTGATAGGGTTTTGAACTGCAAACCTTCGTTAAAACTCGTGCTGGTTATTATTGTATTAGGAACGATAGTGACTCTCTTCCATTCACCTGCAGTTCATGTTTCAGATCATCCATTAAAAGGATCTAGGTAG

mRNA sequence

ATGGATGTCAGTGAAGAAACAAGCAAGAGAAGGTTCCAAAGAATTAAAGATTTCAAAGTTGTTGAGAGGGCCCTCCATATTCCTTTTCGTGATAGGGTTTTGAACTGCAAACCTTCGTTAAAACTCGTGCTGGTTATTATTGTATTAGGAACGATAGTGACTCTCTTCCATTCACCTGCAGTTCATGTTTCAGATCATCCATTAAAAGGATCTAGGTAG

Coding sequence (CDS)

ATGGATGTCAGTGAAGAAACAAGCAAGAGAAGGTTCCAAAGAATTAAAGATTTCAAAGTTGTTGAGAGGGCCCTCCATATTCCTTTTCGTGATAGGGTTTTGAACTGCAAACCTTCGTTAAAACTCGTGCTGGTTATTATTGTATTAGGAACGATAGTGACTCTCTTCCATTCACCTGCAGTTCATGTTTCAGATCATCCATTAAAAGGATCTAGGTAG

Protein sequence

MDVSEETSKRRFQRIKDFKVVERALHIPFRDRVLNCKPSLKLVLVIIVLGTIVTLFHSPAVHVSDHPLKGSR
Homology
[Close]
BLAST of Cp4.1LG01g21040 vs. TrEMBL
Match: A0A0A0KGG9_CUCSA (Hexosyltransferase OS=Cucumis sativus GN=Csa_6G338140 PE=3 SV=1)

HSP 1 Score: 126.3 bits (316), Expect = 1.5e-26
Identity = 62/69 (89.86%), Postives = 66/69 (95.65%), Query Frame = 1 

Query: 4  SEETSKRRFQRIKDFKVVERALHIPFRDRVLNCKPSLKLVLVIIVLGTIVTLFHSPAVHV 63
          +EETSKRRFQRI+DFKVVERALHIP RDRVLNCKPSLKLVLVII LGTIVT FHSPAVH+
Sbjct: 20 NEETSKRRFQRIRDFKVVERALHIPIRDRVLNCKPSLKLVLVIIALGTIVTCFHSPAVHI 79

Query: 64 SDHPLKGSR 73
          SD+PLKGSR
Sbjct: 80 SDYPLKGSR 88

[Close]
BLAST of Cp4.1LG01g21040 vs. TrEMBL
Match: A0A0B2S9S3_GLYSO (Hexosyltransferase OS=Glycine soja GN=glysoja_013349 PE=3 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 2.8e-17
Identity = 45/63 (71.43%), Postives = 56/63 (88.89%), Query Frame = 1 

Query: 4  SEETSKRRFQRIKDFKVVERALHIPFRDRVLNCKPSLKLVLVIIVLGTIVTLFHSPAVHV 63
          SE+T KRR QRIKDFK VE+ALHIPF+DR++ C+P+ KLVLVIIVLGT+VT+FH PAV+ 
Sbjct: 20 SEDTGKRRSQRIKDFKDVEKALHIPFQDRIITCRPNWKLVLVIIVLGTLVTIFHPPAVYN 79

Query: 64 SDH 67
          +DH
Sbjct: 80 TDH 82

[Close]
BLAST of Cp4.1LG01g21040 vs. TrEMBL
Match: I1JHP2_SOYBN (Hexosyltransferase OS=Glycine max GN=GLYMA_02G238200 PE=3 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 2.8e-17
Identity = 45/63 (71.43%), Postives = 56/63 (88.89%), Query Frame = 1 

Query: 4  SEETSKRRFQRIKDFKVVERALHIPFRDRVLNCKPSLKLVLVIIVLGTIVTLFHSPAVHV 63
          SE+T KRR QRIKDFK VE+ALHIPF+DR++ C+P+ KLVLVIIVLGT+VT+FH PAV+ 
Sbjct: 20 SEDTGKRRSQRIKDFKDVEKALHIPFQDRIITCRPNWKLVLVIIVLGTLVTIFHPPAVYN 79

Query: 64 SDH 67
          +DH
Sbjct: 80 TDH 82

[Close]
BLAST of Cp4.1LG01g21040 vs. TrEMBL
Match: A0A151TDW2_CAJCA (Hexosyltransferase OS=Cajanus cajan GN=KK1_011481 PE=3 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 2.4e-16
Identity = 44/63 (69.84%), Postives = 55/63 (87.30%), Query Frame = 1 

Query: 4  SEETSKRRFQRIKDFKVVERALHIPFRDRVLNCKPSLKLVLVIIVLGTIVTLFHSPAVHV 63
          SE+TSKRR QR KDFK VE+ALHIPF+DR + CKP+ KLVLVI++LGT+VT+FH PAV+ 
Sbjct: 20 SEDTSKRRSQRSKDFKDVEKALHIPFQDRGVTCKPNWKLVLVIVILGTLVTIFHPPAVYN 79

Query: 64 SDH 67
          +DH
Sbjct: 80 TDH 82

[Close]
BLAST of Cp4.1LG01g21040 vs. TrEMBL
Match: A0A0R0GMJ9_SOYBN (Hexosyltransferase OS=Glycine max GN=GLYMA_14G122600 PE=3 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 1.2e-15
Identity = 43/64 (67.19%), Postives = 54/64 (84.38%), Query Frame = 1 

Query: 3  VSEETSKRRFQRIKDFKVVERALHIPFRDRVLNCKPSLKLVLVIIVLGTIVTLFHSPAVH 62
          +SE+T KRR QR KDFK VE+ LHIPF+DR + C+P+ KLVLVIIVLGT+VT+FH PAV+
Sbjct: 5  LSEDTGKRRSQRSKDFKDVEKVLHIPFQDRSITCRPNWKLVLVIIVLGTLVTIFHPPAVY 64

Query: 63 VSDH 67
           +DH
Sbjct: 65 NTDH 68

[Close]
BLAST of Cp4.1LG01g21040 vs. NCBI nr
Match: gi|659081878|ref|XP_008441557.1| (PREDICTED: putative UDP-glucuronate:xylan alpha-glucuronosyltransferase 3 [Cucumis melo])

HSP 1 Score: 130.2 bits (326), Expect = 1.5e-27
Identity = 64/69 (92.75%), Postives = 67/69 (97.10%), Query Frame = 1 

Query: 4  SEETSKRRFQRIKDFKVVERALHIPFRDRVLNCKPSLKLVLVIIVLGTIVTLFHSPAVHV 63
          +EETSKRRFQRI+DFKVVERALHIP RDRVLNCKPSLKLVLVIIVLGTIVT FHSPAVH+
Sbjct: 20 NEETSKRRFQRIRDFKVVERALHIPIRDRVLNCKPSLKLVLVIIVLGTIVTCFHSPAVHI 79

Query: 64 SDHPLKGSR 73
          SDHPLKGSR
Sbjct: 80 SDHPLKGSR 88

[Close]
BLAST of Cp4.1LG01g21040 vs. NCBI nr
Match: gi|449462172|ref|XP_004148815.1| (PREDICTED: putative UDP-glucuronate:xylan alpha-glucuronosyltransferase 3 [Cucumis sativus])

HSP 1 Score: 126.3 bits (316), Expect = 2.1e-26
Identity = 62/69 (89.86%), Postives = 66/69 (95.65%), Query Frame = 1 

Query: 4  SEETSKRRFQRIKDFKVVERALHIPFRDRVLNCKPSLKLVLVIIVLGTIVTLFHSPAVHV 63
          +EETSKRRFQRI+DFKVVERALHIP RDRVLNCKPSLKLVLVII LGTIVT FHSPAVH+
Sbjct: 20 NEETSKRRFQRIRDFKVVERALHIPIRDRVLNCKPSLKLVLVIIALGTIVTCFHSPAVHI 79

Query: 64 SDHPLKGSR 73
          SD+PLKGSR
Sbjct: 80 SDYPLKGSR 88

[Close]
BLAST of Cp4.1LG01g21040 vs. NCBI nr
Match: gi|356499040|ref|XP_003518352.1| (PREDICTED: putative UDP-glucuronate:xylan alpha-glucuronosyltransferase 3 [Glycine max])

HSP 1 Score: 95.5 bits (236), Expect = 4.0e-17
Identity = 45/63 (71.43%), Postives = 56/63 (88.89%), Query Frame = 1 

Query: 4  SEETSKRRFQRIKDFKVVERALHIPFRDRVLNCKPSLKLVLVIIVLGTIVTLFHSPAVHV 63
          SE+T KRR QRIKDFK VE+ALHIPF+DR++ C+P+ KLVLVIIVLGT+VT+FH PAV+ 
Sbjct: 20 SEDTGKRRSQRIKDFKDVEKALHIPFQDRIITCRPNWKLVLVIIVLGTLVTIFHPPAVYN 79

Query: 64 SDH 67
          +DH
Sbjct: 80 TDH 82

[Close]
BLAST of Cp4.1LG01g21040 vs. NCBI nr
Match: gi|734420811|gb|KHN41007.1| (Glycogenin-2 [Glycine soja])

HSP 1 Score: 95.5 bits (236), Expect = 4.0e-17
Identity = 45/63 (71.43%), Postives = 56/63 (88.89%), Query Frame = 1 

Query: 4  SEETSKRRFQRIKDFKVVERALHIPFRDRVLNCKPSLKLVLVIIVLGTIVTLFHSPAVHV 63
          SE+T KRR QRIKDFK VE+ALHIPF+DR++ C+P+ KLVLVIIVLGT+VT+FH PAV+ 
Sbjct: 20 SEDTGKRRSQRIKDFKDVEKALHIPFQDRIITCRPNWKLVLVIIVLGTLVTIFHPPAVYN 79

Query: 64 SDH 67
          +DH
Sbjct: 80 TDH 82

[Close]
BLAST of Cp4.1LG01g21040 vs. NCBI nr
Match: gi|1012354062|gb|KYP65249.1| (Glycogenin-1 [Cajanus cajan])

HSP 1 Score: 92.4 bits (228), Expect = 3.4e-16
Identity = 44/63 (69.84%), Postives = 55/63 (87.30%), Query Frame = 1 

Query: 4  SEETSKRRFQRIKDFKVVERALHIPFRDRVLNCKPSLKLVLVIIVLGTIVTLFHSPAVHV 63
          SE+TSKRR QR KDFK VE+ALHIPF+DR + CKP+ KLVLVI++LGT+VT+FH PAV+ 
Sbjct: 20 SEDTSKRRSQRSKDFKDVEKALHIPFQDRGVTCKPNWKLVLVIVILGTLVTIFHPPAVYN 79

Query: 64 SDH 67
          +DH
Sbjct: 80 TDH 82

The following BLAST results are available for this feature:
BLAST of Cp4.1LG01g21040 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG01g21040 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KGG9_CUCSA1.5e-2689.86Hexosyltransferase OS=Cucumis sativus GN=Csa_6G338140 PE=3 SV=1[more]
A0A0B2S9S3_GLYSO2.8e-1771.43Hexosyltransferase OS=Glycine soja GN=glysoja_013349 PE=3 SV=1[more]
I1JHP2_SOYBN2.8e-1771.43Hexosyltransferase OS=Glycine max GN=GLYMA_02G238200 PE=3 SV=1[more]
A0A151TDW2_CAJCA2.4e-1669.84Hexosyltransferase OS=Cajanus cajan GN=KK1_011481 PE=3 SV=1[more]
A0A0R0GMJ9_SOYBN1.2e-1567.19Hexosyltransferase OS=Glycine max GN=GLYMA_14G122600 PE=3 SV=1[more]
BLAST of Cp4.1LG01g21040 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG01g21040 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659081878|ref|XP_008441557.1|1.5e-2792.75PREDICTED: putative UDP-glucuronate:xylan alpha-glucuronosyltransferase 3 [Cucum... [more]
gi|449462172|ref|XP_004148815.1|2.1e-2689.86PREDICTED: putative UDP-glucuronate:xylan alpha-glucuronosyltransferase 3 [Cucum... [more]
gi|356499040|ref|XP_003518352.1|4.0e-1771.43PREDICTED: putative UDP-glucuronate:xylan alpha-glucuronosyltransferase 3 [Glyci... [more]
gi|734420811|gb|KHN41007.1|4.0e-1771.43Glycogenin-2 [Glycine soja][more]
gi|1012354062|gb|KYP65249.1|3.4e-1669.84Glycogenin-1 [Cajanus cajan][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009834 plant-type secondary cell wall biogenesis
biological_process GO:0045492 xylan biosynthetic process
cellular_component GO:0005768 endosome
cellular_component GO:0005802 trans-Golgi network
molecular_function GO:0015020 glucuronosyltransferase activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG01g21040.1Cp4.1LG01g21040.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG01g21040Melon (DHL92) v3.6.1cpemedB466
Cp4.1LG01g21040Silver-seed gourdcarcpeB0096
Cp4.1LG01g21040Silver-seed gourdcarcpeB1158
Cp4.1LG01g21040Cucumber (Chinese Long) v3cpecucB0572
Cp4.1LG01g21040Cucumber (Chinese Long) v3cpecucB0584
Cp4.1LG01g21040Wax gourdcpewgoB0533
Cp4.1LG01g21040Cucurbita pepo (Zucchini)cpecpeB199
Cp4.1LG01g21040Cucurbita pepo (Zucchini)cpecpeB404
Cp4.1LG01g21040Cucumber (Gy14) v1cgycpeB0128
Cp4.1LG01g21040Cucumber (Gy14) v1cgycpeB0136
Cp4.1LG01g21040Cucurbita maxima (Rimu)cmacpeB039
Cp4.1LG01g21040Cucurbita maxima (Rimu)cmacpeB318
Cp4.1LG01g21040Cucurbita maxima (Rimu)cmacpeB721
Cp4.1LG01g21040Cucurbita moschata (Rifu)cmocpeB014
Cp4.1LG01g21040Cucurbita moschata (Rifu)cmocpeB280
Cp4.1LG01g21040Cucurbita moschata (Rifu)cmocpeB673
Cp4.1LG01g21040Wild cucumber (PI 183967)cpecpiB464
Cp4.1LG01g21040Cucumber (Chinese Long) v2cpecuB463
Cp4.1LG01g21040Cucumber (Chinese Long) v2cpecuB473
Cp4.1LG01g21040Bottle gourd (USVL1VR-Ls)cpelsiB338
Cp4.1LG01g21040Bottle gourd (USVL1VR-Ls)cpelsiB382
Cp4.1LG01g21040Watermelon (Charleston Gray)cpewcgB415
Cp4.1LG01g21040Watermelon (97103) v1cpewmB393
Cp4.1LG01g21040Melon (DHL92) v3.5.1cpemeB401
Cp4.1LG01g21040Cucumber (Gy14) v2cgybcpeB801
Cp4.1LG01g21040Cucumber (Gy14) v2cgybcpeB943