Cp4.1LG01g20880 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG01g20880
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionWall-associated kinase family protein
LocationCp4.1LG01 : 17678697 .. 17678939 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAACACATCATGGCATTCATGGTGATGATAATGGAGATTGCCATATTATCAACAGCCTTGGCCATGGTAGCATCTCGAGCCTTACCCGGGTGTGACGAACAGTGTGGCGACGTGCAGATTCCATATCCATTCGGCATCAAAGAAGGGTGCTATCTCAATCAAAATTTCTCGATCACTTGCAACAAAACCGATCGCAATGGACCTTCACGTGTTGCAGCCAGTAGTGCGAACTTGCTATGA

mRNA sequence

ATGAAACACATCATGGCATTCATGGTGATGATAATGGAGATTGCCATATTATCAACAGCCTTGGCCATGGTAGCATCTCGAGCCTTACCCGGGTGTGACGAACAGTGTGGCGACGTGCAGATTCCATATCCATTCGGCATCAAAGAAGGGTGCTATCTCAATCAAAATTTCTCGATCACTTGCAACAAAACCGATCGCAATGGACCTTCACGTGTTGCAGCCAGTAGTGCGAACTTGCTATGA

Coding sequence (CDS)

ATGAAACACATCATGGCATTCATGGTGATGATAATGGAGATTGCCATATTATCAACAGCCTTGGCCATGGTAGCATCTCGAGCCTTACCCGGGTGTGACGAACAGTGTGGCGACGTGCAGATTCCATATCCATTCGGCATCAAAGAAGGGTGCTATCTCAATCAAAATTTCTCGATCACTTGCAACAAAACCGATCGCAATGGACCTTCACGTGTTGCAGCCAGTAGTGCGAACTTGCTATGA

Protein sequence

MKHIMAFMVMIMEIAILSTALAMVASRALPGCDEQCGDVQIPYPFGIKEGCYLNQNFSITCNKTDRNGPSRVAASSANLL
Homology
[Close]
BLAST of Cp4.1LG01g20880 vs. Swiss-Prot
Match: WAKLG_ARATH (Wall-associated receptor kinase-like 8 OS=Arabidopsis thaliana GN=WAKL8 PE=2 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 5.4e-07
Identity = 25/66 (37.88%), Postives = 37/66 (56.06%), Query Frame = 1 

Query: 4  IMAFMVMIMEIAILSTALAMVASRALPGCDEQCGDVQIPYPFGIKEGCYLNQNFSITCNK 63
          +  F+V+++ + I   A A     AL  C + CG+V +PYPFGI +GCY N+ F I C  
Sbjct: 5  VKRFLVVMLLLRICEYAAASTFPLALRNCSDHCGNVSVPYPFGIGKGCYKNKWFEIVCKS 64

Query: 64 TDRNGP 70
          +    P
Sbjct: 65 SSDQQP 70

[Close]
BLAST of Cp4.1LG01g20880 vs. Swiss-Prot
Match: WAKLH_ARATH (Wall-associated receptor kinase-like 9 OS=Arabidopsis thaliana GN=WAKL9 PE=2 SV=1)

HSP 1 Score: 51.6 bits (122), Expect = 4.6e-06
Identity = 19/38 (50.00%), Postives = 26/38 (68.42%), Query Frame = 1 

Query: 25 ASRALPGCDEQCGDVQIPYPFGIKEGCYLNQNFSITCN 63
          A R +  C   CG ++IPYPFG+ +GCYL + + ITCN
Sbjct: 24 ADRTVSLCQPDCGGIKIPYPFGMGKGCYLEKWYEITCN 61

[Close]
BLAST of Cp4.1LG01g20880 vs. TrEMBL
Match: A0A0A0KDF0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G351870 PE=3 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 2.9e-15
Identity = 39/56 (69.64%), Postives = 48/56 (85.71%), Query Frame = 1 

Query: 9  VMIMEIAILSTALAMVASRALPGCDEQCGDVQIPYPFGIKEGCYLNQNFSITCNKT 65
          V+ + + ILSTA+ + +S+ALP CDE CGDVQIPYPFG+K+GCYLNQ FSITCNKT
Sbjct: 8  VIRVVVIILSTAIVVASSQALPDCDEWCGDVQIPYPFGVKQGCYLNQTFSITCNKT 63

[Close]
BLAST of Cp4.1LG01g20880 vs. TrEMBL
Match: A0A0A0KFE8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G352870 PE=4 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 4.8e-10
Identity = 35/63 (55.56%), Postives = 46/63 (73.02%), Query Frame = 1 

Query: 1  MKHIMAFMVMIMEIAILSTALAMVASRALPGCDEQCGDVQIPYPFGIKEGCYLNQNFSIT 60
          M+ +   +V +  I +LST LA  AS+A P CDE CGD++IPYPFG+K+GCY NQ F IT
Sbjct: 1  MERLRKTLVGLTVIILLST-LASAASQAKPDCDEWCGDLRIPYPFGVKQGCYFNQAFLIT 60

Query: 61 CNK 64
          C+K
Sbjct: 61 CDK 62

[Close]
BLAST of Cp4.1LG01g20880 vs. TrEMBL
Match: A0A0A0KCX3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G354370 PE=4 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 4.8e-10
Identity = 35/63 (55.56%), Postives = 46/63 (73.02%), Query Frame = 1 

Query: 1  MKHIMAFMVMIMEIAILSTALAMVASRALPGCDEQCGDVQIPYPFGIKEGCYLNQNFSIT 60
          M+ +   +V +  I +LST LA  AS+A P CDE CGD++IPYPFG+K+GCY NQ F IT
Sbjct: 1  MERLRKTLVGLTVIILLST-LASAASQAKPDCDEWCGDLRIPYPFGVKQGCYFNQAFLIT 60

Query: 61 CNK 64
          C+K
Sbjct: 61 CDK 62

[Close]
BLAST of Cp4.1LG01g20880 vs. TrEMBL
Match: A0A0A0KIF3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G350370 PE=4 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 8.2e-10
Identity = 35/68 (51.47%), Postives = 46/68 (67.65%), Query Frame = 1 

Query: 1  MKHIMAFMVMIMEIAILSTALAMVASRALPGCDEQCGDVQIPYPFGIKEGCYL-NQNFSI 60
          +K I+      + ++  + A   VAS+ALPGCDE CGDVQIPYPFG+KEGCYL N+ F +
Sbjct: 14 VKIIVILSAAFVVVSATTNATVTVASQALPGCDEWCGDVQIPYPFGMKEGCYLNNETFLL 73

Query: 61 TCNKTDRN 68
           C+ T  N
Sbjct: 74 RCSPTADN 81

[Close]
BLAST of Cp4.1LG01g20880 vs. TrEMBL
Match: A0A067EEZ0_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g044785mg PE=4 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 1.1e-09
Identity = 29/61 (47.54%), Postives = 43/61 (70.49%), Query Frame = 1 

Query: 9  VMIMEIAILSTALAMVASRALPGCDEQCGDVQIPYPFGIKEGCYLNQNFSITCNKTDRNG 68
          ++++ + +L  + A   ++A PGC  +CGDV+IPYPFG + GC+LN+ F ITCNKT  N 
Sbjct: 9  LVVLLLVLLRASAAAAHAQAKPGCPSRCGDVEIPYPFGTRPGCFLNKYFVITCNKTHYNP 68

Query: 69 P 70
          P
Sbjct: 69 P 69

[Close]
BLAST of Cp4.1LG01g20880 vs. TAIR10
Match: AT1G16260.1 (AT1G16260.1 Wall-associated kinase family protein)

HSP 1 Score: 54.7 bits (130), Expect = 3.1e-08
Identity = 25/66 (37.88%), Postives = 37/66 (56.06%), Query Frame = 1 

Query: 4  IMAFMVMIMEIAILSTALAMVASRALPGCDEQCGDVQIPYPFGIKEGCYLNQNFSITCNK 63
          +  F+V+++ + I   A A     AL  C + CG+V +PYPFGI +GCY N+ F I C  
Sbjct: 5  VKRFLVVMLLLRICEYAAASTFPLALRNCSDHCGNVSVPYPFGIGKGCYKNKWFEIVCKS 64

Query: 64 TDRNGP 70
          +    P
Sbjct: 65 SSDQQP 70

[Close]
BLAST of Cp4.1LG01g20880 vs. TAIR10
Match: AT1G69730.1 (AT1G69730.1 Wall-associated kinase family protein)

HSP 1 Score: 51.6 bits (122), Expect = 2.6e-07
Identity = 19/38 (50.00%), Postives = 26/38 (68.42%), Query Frame = 1 

Query: 25 ASRALPGCDEQCGDVQIPYPFGIKEGCYLNQNFSITCN 63
          A R +  C   CG ++IPYPFG+ +GCYL + + ITCN
Sbjct: 24 ADRTVSLCQPDCGGIKIPYPFGMGKGCYLEKWYEITCN 61

[Close]
BLAST of Cp4.1LG01g20880 vs. TAIR10
Match: AT1G21250.1 (AT1G21250.1 cell wall-associated kinase)

HSP 1 Score: 48.9 bits (115), Expect = 1.7e-06
Identity = 24/48 (50.00%), Postives = 31/48 (64.58%), Query Frame = 1 

Query: 23 MVASRALPG--CDEQCGDVQIPYPFGIKEGCYL--NQNFSITCNKTDR 67
          +V  +  PG  C  +CG++ I YPFGI  GCY   N++FSITC K DR
Sbjct: 21 LVKGQHQPGENCQNKCGNITIEYPFGISSGCYYPGNESFSITC-KEDR 67

[Close]
BLAST of Cp4.1LG01g20880 vs. TAIR10
Match: AT1G17910.1 (AT1G17910.1 Wall-associated kinase family protein)

HSP 1 Score: 47.8 bits (112), Expect = 3.8e-06
Identity = 18/38 (47.37%), Postives = 27/38 (71.05%), Query Frame = 1 

Query: 32 CDEQCGDVQIPYPFGIKE-GCYLNQNFSITCNKTDRNG 69
          C  +CGD+QIP+PFGI E GCYL++ + + C  +  +G
Sbjct: 26 CTHKCGDIQIPFPFGIGEIGCYLDEWYQVECRPSATSG 63

[Close]
BLAST of Cp4.1LG01g20880 vs. TAIR10
Match: AT1G16110.1 (AT1G16110.1 wall associated kinase-like 6)

HSP 1 Score: 47.0 bits (110), Expect = 6.4e-06
Identity = 20/45 (44.44%), Postives = 27/45 (60.00%), Query Frame = 1 

Query: 26 SRALPGCDEQCGDVQIPYPFGIKEGCYLNQNFSITCNKTDRNGPS 71
          S +   C+  CG V IP+PFGI + CYLN  + + CN T  +G S
Sbjct: 36 SNSSTSCNRACGGVSIPFPFGIGKDCYLNGWYEVICN-TSTSGSS 79

[Close]
BLAST of Cp4.1LG01g20880 vs. NCBI nr
Match: gi|778722245|ref|XP_011658442.1| (PREDICTED: wall-associated receptor kinase 3-like [Cucumis sativus])

HSP 1 Score: 89.0 bits (219), Expect = 4.2e-15
Identity = 39/56 (69.64%), Postives = 48/56 (85.71%), Query Frame = 1 

Query: 9  VMIMEIAILSTALAMVASRALPGCDEQCGDVQIPYPFGIKEGCYLNQNFSITCNKT 65
          V+ + + ILSTA+ + +S+ALP CDE CGDVQIPYPFG+K+GCYLNQ FSITCNKT
Sbjct: 8  VIRVVVIILSTAIVVASSQALPDCDEWCGDVQIPYPFGVKQGCYLNQTFSITCNKT 63

[Close]
BLAST of Cp4.1LG01g20880 vs. NCBI nr
Match: gi|659081959|ref|XP_008441597.1| (PREDICTED: wall-associated receptor kinase 2-like [Cucumis melo])

HSP 1 Score: 84.3 bits (207), Expect = 1.0e-13
Identity = 35/49 (71.43%), Postives = 44/49 (89.80%), Query Frame = 1 

Query: 16 ILSTALAMVASRALPGCDEQCGDVQIPYPFGIKEGCYLNQNFSITCNKT 65
          ILSTA+ + +S+ALP CDE CGD+QIPYPFG+K+GCYL+Q+F ITCNKT
Sbjct: 15 ILSTAIVVASSQALPDCDEWCGDLQIPYPFGLKQGCYLSQSFLITCNKT 63

[Close]
BLAST of Cp4.1LG01g20880 vs. NCBI nr
Match: gi|659081963|ref|XP_008441599.1| (PREDICTED: LOW QUALITY PROTEIN: wall-associated receptor kinase 2-like [Cucumis melo])

HSP 1 Score: 72.8 bits (177), Expect = 3.1e-10
Identity = 36/63 (57.14%), Postives = 46/63 (73.02%), Query Frame = 1 

Query: 1  MKHIMAFMVMIMEIAILSTALAMVASRALPGCDEQCGDVQIPYPFGIKEGCYLNQNFSIT 60
          M+ +   +V +  I ILST  + V S A PGCDE CGD++IPYP+G+KEGCYLNQ F IT
Sbjct: 1  MERLRKTLVGLTVIIILSTPASAV-SLAKPGCDEWCGDLRIPYPYGVKEGCYLNQTFLIT 60

Query: 61 CNK 64
          C+K
Sbjct: 61 CDK 62

[Close]
BLAST of Cp4.1LG01g20880 vs. NCBI nr
Match: gi|778722248|ref|XP_011658443.1| (PREDICTED: wall-associated receptor kinase 2-like [Cucumis sativus])

HSP 1 Score: 71.6 bits (174), Expect = 6.9e-10
Identity = 35/63 (55.56%), Postives = 46/63 (73.02%), Query Frame = 1 

Query: 1  MKHIMAFMVMIMEIAILSTALAMVASRALPGCDEQCGDVQIPYPFGIKEGCYLNQNFSIT 60
          M+ +   +V +  I +LST LA  AS+A P CDE CGD++IPYPFG+K+GCY NQ F IT
Sbjct: 1  MERLRKTLVGLTVIILLST-LASAASQAKPDCDEWCGDLRIPYPFGVKQGCYFNQAFLIT 60

Query: 61 CNK 64
          C+K
Sbjct: 61 CDK 62

[Close]
BLAST of Cp4.1LG01g20880 vs. NCBI nr
Match: gi|700192310|gb|KGN47514.1| (hypothetical protein Csa_6G352870 [Cucumis sativus])

HSP 1 Score: 71.6 bits (174), Expect = 6.9e-10
Identity = 35/63 (55.56%), Postives = 46/63 (73.02%), Query Frame = 1 

Query: 1  MKHIMAFMVMIMEIAILSTALAMVASRALPGCDEQCGDVQIPYPFGIKEGCYLNQNFSIT 60
          M+ +   +V +  I +LST LA  AS+A P CDE CGD++IPYPFG+K+GCY NQ F IT
Sbjct: 1  MERLRKTLVGLTVIILLST-LASAASQAKPDCDEWCGDLRIPYPFGVKQGCYFNQAFLIT 60

Query: 61 CNK 64
          C+K
Sbjct: 61 CDK 62

The following BLAST results are available for this feature:
BLAST of Cp4.1LG01g20880 vs. Swiss-Prot
Match NameE-valueIdentityDescription
WAKLG_ARATH5.4e-0737.88Wall-associated receptor kinase-like 8 OS=Arabidopsis thaliana GN=WAKL8 PE=2 SV=... [more]
WAKLH_ARATH4.6e-0650.00Wall-associated receptor kinase-like 9 OS=Arabidopsis thaliana GN=WAKL9 PE=2 SV=... [more]
BLAST of Cp4.1LG01g20880 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KDF0_CUCSA2.9e-1569.64Uncharacterized protein OS=Cucumis sativus GN=Csa_6G351870 PE=3 SV=1[more]
A0A0A0KFE8_CUCSA4.8e-1055.56Uncharacterized protein OS=Cucumis sativus GN=Csa_6G352870 PE=4 SV=1[more]
A0A0A0KCX3_CUCSA4.8e-1055.56Uncharacterized protein OS=Cucumis sativus GN=Csa_6G354370 PE=4 SV=1[more]
A0A0A0KIF3_CUCSA8.2e-1051.47Uncharacterized protein OS=Cucumis sativus GN=Csa_6G350370 PE=4 SV=1[more]
A0A067EEZ0_CITSI1.1e-0947.54Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g044785mg PE=4 SV=1[more]
BLAST of Cp4.1LG01g20880 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G16260.13.1e-0837.88 Wall-associated kinase family protein[more]
AT1G69730.12.6e-0750.00 Wall-associated kinase family protein[more]
AT1G21250.11.7e-0650.00 cell wall-associated kinase[more]
AT1G17910.13.8e-0647.37 Wall-associated kinase family protein[more]
AT1G16110.16.4e-0644.44 wall associated kinase-like 6[more]
BLAST of Cp4.1LG01g20880 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778722245|ref|XP_011658442.1|4.2e-1569.64PREDICTED: wall-associated receptor kinase 3-like [Cucumis sativus][more]
gi|659081959|ref|XP_008441597.1|1.0e-1371.43PREDICTED: wall-associated receptor kinase 2-like [Cucumis melo][more]
gi|659081963|ref|XP_008441599.1|3.1e-1057.14PREDICTED: LOW QUALITY PROTEIN: wall-associated receptor kinase 2-like [Cucumis ... [more]
gi|778722248|ref|XP_011658443.1|6.9e-1055.56PREDICTED: wall-associated receptor kinase 2-like [Cucumis sativus][more]
gi|700192310|gb|KGN47514.1|6.9e-1055.56hypothetical protein Csa_6G352870 [Cucumis sativus][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0030247polysaccharide binding
Vocabulary: INTERPRO
TermDefinition
IPR025287WAK_GUB
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006468 protein phosphorylation
biological_process GO:0009069 serine family amino acid metabolic process
cellular_component GO:0005575 cellular_component
molecular_function GO:0005524 ATP binding
molecular_function GO:0005509 calcium ion binding
molecular_function GO:0030247 polysaccharide binding
molecular_function GO:0004674 protein serine/threonine kinase activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG01g20880.1Cp4.1LG01g20880.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR025287Wall-associated receptor kinase, galacturonan-binding domainPFAMPF13947GUB_WAK_bindcoord: 30..68
score: 1.1
NoneNo IPR availablePANTHERPTHR27005FAMILY NOT NAMEDcoord: 5..65
score: 1.0
NoneNo IPR availablePANTHERPTHR27005:SF61SUBFAMILY NOT NAMEDcoord: 5..65
score: 1.0

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG01g20880Cla013887Watermelon (97103) v1cpewmB393
Cp4.1LG01g20880MELO3C008448Melon (DHL92) v3.5.1cpemeB401
Cp4.1LG01g20880Lsi08G005000Bottle gourd (USVL1VR-Ls)cpelsiB382
Cp4.1LG01g20880MELO3C008436.2Melon (DHL92) v3.6.1cpemedB466
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG01g20880Cucurbita pepo (Zucchini)cpecpeB199
Cp4.1LG01g20880Cucurbita pepo (Zucchini)cpecpeB404
Cp4.1LG01g20880Cucumber (Gy14) v1cgycpeB0128
Cp4.1LG01g20880Cucurbita maxima (Rimu)cmacpeB039
Cp4.1LG01g20880Cucurbita maxima (Rimu)cmacpeB318
Cp4.1LG01g20880Cucurbita maxima (Rimu)cmacpeB721
Cp4.1LG01g20880Cucurbita moschata (Rifu)cmocpeB014
Cp4.1LG01g20880Cucurbita moschata (Rifu)cmocpeB280
Cp4.1LG01g20880Cucurbita moschata (Rifu)cmocpeB673
Cp4.1LG01g20880Wild cucumber (PI 183967)cpecpiB464
Cp4.1LG01g20880Cucumber (Chinese Long) v2cpecuB463
Cp4.1LG01g20880Watermelon (Charleston Gray)cpewcgB415
Cp4.1LG01g20880Cucumber (Gy14) v2cgybcpeB801
Cp4.1LG01g20880Silver-seed gourdcarcpeB0096
Cp4.1LG01g20880Silver-seed gourdcarcpeB1158
Cp4.1LG01g20880Cucumber (Chinese Long) v3cpecucB0572
Cp4.1LG01g20880Wax gourdcpewgoB0533