Cp4.1LG01g20840 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG01g20840
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionUnknown protein
LocationCp4.1LG01 : 17647375 .. 17647806 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCGATTCAGAGTCTCGCCGGACCACAATCGGGTCATACCCGACCCACATCCGACCCCCCACCACCCGCCCTCCCTCAATGCCCACCACCTTGCTCCAATCGATCCCCCGAAATCGGTGCTTCCGTTGATTCCGTCGAACCCAGAGACGGCGGTGATGTCGACCAGGCCTGTAATCGGAAACAAAGCCGGCGACGGAAAAGCGAAATCTGTGCTTCCGTTCATCCCAGAGACGGCGGTGACGTCGACGGGGACGTTGACCAATTCTCACGGGTACAGAGTCGGCGTCGGAAAAGGGAAATCTGTAATTCCGAAGAAGAGGAAGTTAGTGAAGACGATGATGTACCACTGCATTAAGAACTTCCTCATATCGCTGTTCCGTCGCCCGCCGGAAACCCACAACCGCCCCAAACCCATTACCGACGACCAGTAA

mRNA sequence

ATGCGATTCAGAGTCTCGCCGGACCACAATCGGGTCATACCCGACCCACATCCGACCCCCCACCACCCGCCCTCCCTCAATGCCCACCACCTTGCTCCAATCGATCCCCCGAAATCGGTGCTTCCGTTGATTCCGTCGAACCCAGAGACGGCGGTGATGTCGACCAGGCCTGTAATCGGAAACAAAGCCGGCGACGGAAAAGCGAAATCTGTGCTTCCGTTCATCCCAGAGACGGCGGTGACGTCGACGGGGACGTTGACCAATTCTCACGGGTACAGAGTCGGCGTCGGAAAAGGGAAATCTGTAATTCCGAAGAAGAGGAAGTTAGTGAAGACGATGATGTACCACTGCATTAAGAACTTCCTCATATCGCTGTTCCGTCGCCCGCCGGAAACCCACAACCGCCCCAAACCCATTACCGACGACCAGTAA

Coding sequence (CDS)

ATGCGATTCAGAGTCTCGCCGGACCACAATCGGGTCATACCCGACCCACATCCGACCCCCCACCACCCGCCCTCCCTCAATGCCCACCACCTTGCTCCAATCGATCCCCCGAAATCGGTGCTTCCGTTGATTCCGTCGAACCCAGAGACGGCGGTGATGTCGACCAGGCCTGTAATCGGAAACAAAGCCGGCGACGGAAAAGCGAAATCTGTGCTTCCGTTCATCCCAGAGACGGCGGTGACGTCGACGGGGACGTTGACCAATTCTCACGGGTACAGAGTCGGCGTCGGAAAAGGGAAATCTGTAATTCCGAAGAAGAGGAAGTTAGTGAAGACGATGATGTACCACTGCATTAAGAACTTCCTCATATCGCTGTTCCGTCGCCCGCCGGAAACCCACAACCGCCCCAAACCCATTACCGACGACCAGTAA

Protein sequence

MRFRVSPDHNRVIPDPHPTPHHPPSLNAHHLAPIDPPKSVLPLIPSNPETAVMSTRPVIGNKAGDGKAKSVLPFIPETAVTSTGTLTNSHGYRVGVGKGKSVIPKKRKLVKTMMYHCIKNFLISLFRRPPETHNRPKPITDDQ
Homology
[Close]
BLAST of Cp4.1LG01g20840 vs. TrEMBL
Match: A0A0A0KDQ7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G374710 PE=4 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 8.6e-10
Identity = 35/50 (70.00%), Postives = 41/50 (82.00%), Query Frame = 1 

Query: 93  RVGVGKGKSVIPKKRKLVKTMMYHCIKNFLISLFRRPPETHNRPKPITDD 143
           RVG  K KSVIPK+RKLVKTM+YH +K+FLISLFR   + HNRPKPI+ D
Sbjct: 32  RVGGRKIKSVIPKQRKLVKTMIYHSLKDFLISLFRPSSDIHNRPKPISKD 81

[Close]
BLAST of Cp4.1LG01g20840 vs. NCBI nr
Match: gi|700192474|gb|KGN47678.1| (hypothetical protein Csa_6G374710 [Cucumis sativus])

HSP 1 Score: 71.6 bits (174), Expect = 1.2e-09
Identity = 35/50 (70.00%), Postives = 41/50 (82.00%), Query Frame = 1 

Query: 93  RVGVGKGKSVIPKKRKLVKTMMYHCIKNFLISLFRRPPETHNRPKPITDD 143
           RVG  K KSVIPK+RKLVKTM+YH +K+FLISLFR   + HNRPKPI+ D
Sbjct: 32  RVGGRKIKSVIPKQRKLVKTMIYHSLKDFLISLFRPSSDIHNRPKPISKD 81

The following BLAST results are available for this feature:
BLAST of Cp4.1LG01g20840 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG01g20840 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KDQ7_CUCSA8.6e-1070.00Uncharacterized protein OS=Cucumis sativus GN=Csa_6G374710 PE=4 SV=1[more]
BLAST of Cp4.1LG01g20840 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG01g20840 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700192474|gb|KGN47678.1|1.2e-0970.00hypothetical protein Csa_6G374710 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG01g20840.1Cp4.1LG01g20840.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG01g20840Csa6G374710Cucumber (Chinese Long) v2cpecuB461
Cp4.1LG01g20840CSPI06G19930Wild cucumber (PI 183967)cpecpiB462
Cp4.1LG01g20840CsaV3_6G031320Cucumber (Chinese Long) v3cpecucB0572
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG01g20840Cucurbita pepo (Zucchini)cpecpeB199
Cp4.1LG01g20840Cucurbita pepo (Zucchini)cpecpeB404
Cp4.1LG01g20840Cucurbita maxima (Rimu)cmacpeB039
Cp4.1LG01g20840Cucurbita maxima (Rimu)cmacpeB318
Cp4.1LG01g20840Cucurbita maxima (Rimu)cmacpeB721
Cp4.1LG01g20840Cucurbita moschata (Rifu)cmocpeB014
Cp4.1LG01g20840Cucurbita moschata (Rifu)cmocpeB280
Cp4.1LG01g20840Cucurbita moschata (Rifu)cmocpeB673
Cp4.1LG01g20840Bottle gourd (USVL1VR-Ls)cpelsiB382
Cp4.1LG01g20840Watermelon (Charleston Gray)cpewcgB415
Cp4.1LG01g20840Watermelon (97103) v1cpewmB393
Cp4.1LG01g20840Melon (DHL92) v3.5.1cpemeB401
Cp4.1LG01g20840Melon (DHL92) v3.6.1cpemedB466
Cp4.1LG01g20840Silver-seed gourdcarcpeB0096
Cp4.1LG01g20840Silver-seed gourdcarcpeB1158
Cp4.1LG01g20840Wax gourdcpewgoB0533