Cp4.1LG01g18630 (gene) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG01g18630
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	Type I inositol-1,4,5-trisphosphate 5-phosphatase
Location	Cp4.1LG01 : 15944478 .. 15944968 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTAAAGTATTGGAAGGATGGGAAGAAGGGAACATAAAATTTGGGCCAACTTACAAATATTATCCAAATTCAGAGGCTTATTATGGAGGTGTTCATGGTGTAAAAGCTCAAAAAAGGAGGGCTCCTGCATGGTATTAGCTTCATTTTCTTTCTTCATTTCTTATGGCCTACCCTTTTCTAATTCTTGTCTTAAAATTTAGGTGTGATCGAGTTATATGGAACGGGAAGGGGATTAAGCAAGTATCATATGATCGAGGAGAATCAATGTTGTCAGATCATAGACCTGTAATGGCCATGTTCATGATAGAAGTTGAAACATCGACGAACTTAAAAACTTTGAGGAGTTTCTTTTTATCAAACAGGTTTGAACATCTCAATAATTCTAATACCCCATTTGTTGAGACTGATGAGGATGAAGACGGTGATGAGATATTTTCAACCGTCGGTTTCGTATGTAAAACGAAATTGACTTTTGAAAGTCATCTTTAA

mRNA sequence

ATGGTAAAGTGTGATCGAGTTATATGGAACGGGAAGGGGATTAAGCAAGTATCATATGATCGAGGAGAATCAATGTTGTCAGATCATAGACCTGTAATGGCCATGTTTGAACATCTCAATAATTCTAATACCCCATTTGTTGAGACTGATGAGGATGAAGACGGTGATGAGATATTTTCAACCGTCGGTTTCGTATGTAAAACGAAATTGACTTTTGAAAGTCATCTTTAA

Coding sequence (CDS)

ATGGTAAAGTGTGATCGAGTTATATGGAACGGGAAGGGGATTAAGCAAGTATCATATGATCGAGGAGAATCAATGTTGTCAGATCATAGACCTGTAATGGCCATGTTTGAACATCTCAATAATTCTAATACCCCATTTGTTGAGACTGATGAGGATGAAGACGGTGATGAGATATTTTCAACCGTCGGTTTCGTATGTAAAACGAAATTGACTTTTGAAAGTCATCTTTAA

Protein sequence

MVKCDRVIWNGKGIKQVSYDRGESMLSDHRPVMAMFEHLNNSNTPFVETDEDEDGDEIFSTVGFVCKTKLTFESHL

Homology

[Close]

BLAST of Cp4.1LG01g18630 vs. Swiss-Prot
Match: IP5P5_ARATH (Type I inositol polyphosphate 5-phosphatase 5 OS=Arabidopsis thaliana GN=IP5P5 PE=2 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 1.4e-07
Identity = 22/33 (66.67%), Postives = 28/33 (84.85%), Query Frame = 1


Query: 4   CDRVIWNGKGIKQVSYDRGESMLSDHRPVMAMF 37
           CDR++W G+GI+Q+SY RGES  SDHRPV A+F
Sbjct: 458 CDRILWKGEGIEQLSYIRGESRFSDHRPVCAIF 490

[Close]

BLAST of Cp4.1LG01g18630 vs. Swiss-Prot
Match: IP5PA_ARATH (Type I inositol polyphosphate 5-phosphatase 10 OS=Arabidopsis thaliana GN=IP5P10 PE=2 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 3.0e-07
Identity = 21/33 (63.64%), Postives = 28/33 (84.85%), Query Frame = 1


Query: 4   CDRVIWNGKGIKQVSYDRGESMLSDHRPVMAMF 37
           CDR++W+G GI+Q+SY RGES  SDHRPV ++F
Sbjct: 418 CDRILWHGDGIRQLSYVRGESRFSDHRPVCSVF 450

[Close]

BLAST of Cp4.1LG01g18630 vs. Swiss-Prot
Match: IP5P4_ARATH (Type I inositol polyphosphate 5-phosphatase 4 OS=Arabidopsis thaliana GN=IP5P4 PE=2 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 3.0e-07
Identity = 21/33 (63.64%), Postives = 27/33 (81.82%), Query Frame = 1


Query: 4   CDRVIWNGKGIKQVSYDRGESMLSDHRPVMAMF 37
           CDR++W+G GI Q+SY RGES  SDHRPV ++F
Sbjct: 474 CDRILWHGSGISQLSYVRGESRFSDHRPVYSLF 506

[Close]

BLAST of Cp4.1LG01g18630 vs. Swiss-Prot
Match: IP5P7_ARATH (Type IV inositol polyphosphate 5-phosphatase 7 OS=Arabidopsis thaliana GN=IP5P7 PE=1 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 6.8e-07
Identity = 22/40 (55.00%), Postives = 29/40 (72.50%), Query Frame = 1


Query: 4   CDRVIWNGKGIKQVSYDRGESMLSDHRPVMAMFEHLNNSN 44
           CDR++W+G+G+ Q+SY RGES  SDHRPV  +F     SN
Sbjct: 522 CDRILWHGEGLHQLSYVRGESRFSDHRPVYGIFSAEVESN 561

[Close]

BLAST of Cp4.1LG01g18630 vs. Swiss-Prot
Match: IP5P9_ARATH (Type IV inositol polyphosphate 5-phosphatase 9 OS=Arabidopsis thaliana GN=IP5P9 PE=1 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 6.8e-07
Identity = 21/33 (63.64%), Postives = 26/33 (78.79%), Query Frame = 1


Query: 4   CDRVIWNGKGIKQVSYDRGESMLSDHRPVMAMF 37
           CDR+IW G G+KQ  Y RGE+ +SDHRPV A+F
Sbjct: 346 CDRIIWYGNGLKQHEYTRGETKISDHRPVKAIF 378

[Close]

BLAST of Cp4.1LG01g18630 vs. TrEMBL
Match: A0A061ET90_THECC (Type I inositol-1,4,5-trisphosphate 5-phosphatase CVP2 OS=Theobroma cacao GN=TCM_022000 PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 8.0e-07
Identity = 24/43 (55.81%), Postives = 33/43 (76.74%), Query Frame = 1


Query: 4   CDRVIWNGKGIKQVSYDRGESMLSDHRPVMAMFE-HLNNSNTP 46
           CDR++W G+G+KQ+ Y RGES  SDHRPV ++F  H+N +N P
Sbjct: 518 CDRILWKGEGLKQIWYSRGESRFSDHRPVYSLFSVHVNPANKP 560

[Close]

BLAST of Cp4.1LG01g18630 vs. TrEMBL
Match: W9S0N6_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_004294 PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 8.0e-07
Identity = 26/42 (61.90%), Postives = 32/42 (76.19%), Query Frame = 1


Query: 3  KCDRVIWNGKGIKQVSYDRGESMLSDHRPVMAMFEHLNNSNT 45
          +CDR+IW GKG+KQ  Y RGE  LSDHRPV A+F +L+  NT
Sbjct: 33 ECDRIIWFGKGLKQTPYGRGEFRLSDHRPVYAIFTYLSIMNT 74

[Close]

BLAST of Cp4.1LG01g18630 vs. TrEMBL
Match: A0A0D2PTK8_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_005G153900 PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 8.0e-07
Identity = 35/74 (47.30%), Postives = 43/74 (58.11%), Query Frame = 1


Query: 4   CDRVIWNGKGIKQVSYDRGESMLSDHRPVMAMFE---HLNNSNTPFVETDEDEDGDEIFS 63
           CDR+IW GKG+KQ  YDRGE   SDHRPV A+F     + +S   F      E  D I S
Sbjct: 351 CDRIIWYGKGLKQHEYDRGEENFSDHRPVKAIFTAEVGVLHSLKQFQSVFLSERFDRITS 410

Query: 64  -TVGFVCKTKLTFE 74
            T  FVCK + +F+
Sbjct: 411 QTDDFVCKGRSSFQ 424

[Close]

BLAST of Cp4.1LG01g18630 vs. TrEMBL
Match: K4AS76_SOLLC (Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 1.4e-06
Identity = 24/33 (72.73%), Postives = 29/33 (87.88%), Query Frame = 1


Query: 4   CDRVIWNGKGIKQVSYDRGESMLSDHRPVMAMF 37
           CDR+IW G+G+KQ+ YDRGES LSDHRPV A+F
Sbjct: 294 CDRIIWYGEGLKQLLYDRGESKLSDHRPVKAIF 326

[Close]

BLAST of Cp4.1LG01g18630 vs. TrEMBL
Match: A0A0R0J1K7_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_07G107000 PE=4 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 1.8e-06
Identity = 24/33 (72.73%), Postives = 28/33 (84.85%), Query Frame = 1


Query: 4   CDRVIWNGKGIKQVSYDRGESMLSDHRPVMAMF 37
           CDR+IW GKG+KQ+ Y+R ES LSDHRPV AMF
Sbjct: 340 CDRIIWFGKGMKQIQYNRSESKLSDHRPVRAMF 372

[Close]

BLAST of Cp4.1LG01g18630 vs. TAIR10
Match: AT5G65090.1 (AT5G65090.1 DNAse I-like superfamily protein)

HSP 1 Score: 56.6 bits (135), Expect = 7.7e-09
Identity = 22/33 (66.67%), Postives = 28/33 (84.85%), Query Frame = 1


Query: 4   CDRVIWNGKGIKQVSYDRGESMLSDHRPVMAMF 37
           CDR++W G+GI+Q+SY RGES  SDHRPV A+F
Sbjct: 458 CDRILWKGEGIEQLSYIRGESRFSDHRPVCAIF 490

[Close]

BLAST of Cp4.1LG01g18630 vs. TAIR10
Match: AT3G63240.1 (AT3G63240.1 DNAse I-like superfamily protein)

HSP 1 Score: 55.5 bits (132), Expect = 1.7e-08
Identity = 21/33 (63.64%), Postives = 27/33 (81.82%), Query Frame = 1


Query: 4   CDRVIWNGKGIKQVSYDRGESMLSDHRPVMAMF 37
           CDR++W+G GI Q+SY RGES  SDHRPV ++F
Sbjct: 474 CDRILWHGSGISQLSYVRGESRFSDHRPVYSLF 506

[Close]

BLAST of Cp4.1LG01g18630 vs. TAIR10
Match: AT5G04980.2 (AT5G04980.2 DNAse I-like superfamily protein)

HSP 1 Score: 55.5 bits (132), Expect = 1.7e-08
Identity = 21/33 (63.64%), Postives = 28/33 (84.85%), Query Frame = 1


Query: 4   CDRVIWNGKGIKQVSYDRGESMLSDHRPVMAMF 37
           CDR++W+G GI+Q+SY RGES  SDHRPV ++F
Sbjct: 418 CDRILWHGDGIRQLSYVRGESRFSDHRPVCSVF 450

[Close]

BLAST of Cp4.1LG01g18630 vs. TAIR10
Match: AT2G32010.1 (AT2G32010.1 CVP2 like 1)

HSP 1 Score: 54.3 bits (129), Expect = 3.8e-08
Identity = 22/40 (55.00%), Postives = 29/40 (72.50%), Query Frame = 1


Query: 4   CDRVIWNGKGIKQVSYDRGESMLSDHRPVMAMFEHLNNSN 44
           CDR++W+G+G+ Q+SY RGES  SDHRPV  +F     SN
Sbjct: 522 CDRILWHGEGLHQLSYVRGESRFSDHRPVYGIFSAEVESN 561

[Close]

BLAST of Cp4.1LG01g18630 vs. TAIR10
Match: AT2G01900.1 (AT2G01900.1 DNAse I-like superfamily protein)

HSP 1 Score: 54.3 bits (129), Expect = 3.8e-08
Identity = 21/33 (63.64%), Postives = 26/33 (78.79%), Query Frame = 1


Query: 4   CDRVIWNGKGIKQVSYDRGESMLSDHRPVMAMF 37
           CDR+IW G G+KQ  Y RGE+ +SDHRPV A+F
Sbjct: 346 CDRIIWYGNGLKQHEYTRGETKISDHRPVKAIF 378

[Close]

BLAST of Cp4.1LG01g18630 vs. NCBI nr
Match: gi|778698376|ref|XP_004150156.2| (PREDICTED: type I inositol 1,4,5-trisphosphate 5-phosphatase CVP2 [Cucumis sativus])

HSP 1 Score: 102.8 bits (255), Expect = 2.6e-19
Identity = 50/97 (51.55%), Postives = 63/97 (64.95%), Query Frame = 1


Query: 4   CDRVIWNGKGIKQVSYDRGESMLSDHRPVMAM----------------------FEHLNN 63
           CDR++WNGKG+KQ+SY+RGES LSDHRPVMA+                      FE LNN
Sbjct: 334 CDRILWNGKGLKQISYNRGESKLSDHRPVMAVFTAEVDTLTSLKTLRSYFLSNRFEQLNN 393

Query: 64  SNTPFVETDEDE--DGDEIFSTVGFVCKTKLTFESHL 77
           S TPFVE  E++  + +E+FSTV F+CK K TF+ HL
Sbjct: 394 STTPFVEDQEEDEYEDEEMFSTVNFICKNKSTFQDHL 430

[Close]

BLAST of Cp4.1LG01g18630 vs. NCBI nr
Match: gi|659072729|ref|XP_008466917.1| (PREDICTED: type I inositol 1,4,5-trisphosphate 5-phosphatase CVP2 isoform X1 [Cucumis melo])

HSP 1 Score: 97.4 bits (241), Expect = 1.1e-17
Identity = 54/98 (55.10%), Postives = 63/98 (64.29%), Query Frame = 1


Query: 4   CDRVIWNGKGIKQVSYDRGESMLSDHRPVMAM----------------------FEHLNN 63
           CDR+IWNGKG+KQVSY+RGES LSDHRPVMA+                      FE LNN
Sbjct: 336 CDRIIWNGKGLKQVSYNRGESNLSDHRPVMAIFTAEVDTLTNLKSLRSYFLSNRFEQLNN 395

Query: 64  SNTPFV---ETDEDEDGDEIFSTVGFVCKTKLTFESHL 77
           SNT FV   E DE+ED +E+FSTV F+ K K TF+ HL
Sbjct: 396 SNTLFVKEQEEDENED-EEMFSTVNFIYKNKSTFQDHL 432

[Close]

BLAST of Cp4.1LG01g18630 vs. NCBI nr
Match: gi|659072731|ref|XP_008466924.1| (PREDICTED: type I inositol 1,4,5-trisphosphate 5-phosphatase CVP2 isoform X2 [Cucumis melo])

HSP 1 Score: 97.4 bits (241), Expect = 1.1e-17
Identity = 54/98 (55.10%), Postives = 63/98 (64.29%), Query Frame = 1


Query: 4   CDRVIWNGKGIKQVSYDRGESMLSDHRPVMAM----------------------FEHLNN 63
           CDR+IWNGKG+KQVSY+RGES LSDHRPVMA+                      FE LNN
Sbjct: 334 CDRIIWNGKGLKQVSYNRGESNLSDHRPVMAIFTAEVDTLTNLKSLRSYFLSNRFEQLNN 393

Query: 64  SNTPFV---ETDEDEDGDEIFSTVGFVCKTKLTFESHL 77
           SNT FV   E DE+ED +E+FSTV F+ K K TF+ HL
Sbjct: 394 SNTLFVKEQEEDENED-EEMFSTVNFIYKNKSTFQDHL 430

[Close]

BLAST of Cp4.1LG01g18630 vs. NCBI nr
Match: gi|590629868|ref|XP_007027110.1| (Type I inositol-1,4,5-trisphosphate 5-phosphatase CVP2 [Theobroma cacao])

HSP 1 Score: 60.8 bits (146), Expect = 1.2e-06
Identity = 24/43 (55.81%), Postives = 33/43 (76.74%), Query Frame = 1


Query: 4   CDRVIWNGKGIKQVSYDRGESMLSDHRPVMAMFE-HLNNSNTP 46
           CDR++W G+G+KQ+ Y RGES  SDHRPV ++F  H+N +N P
Sbjct: 518 CDRILWKGEGLKQIWYSRGESRFSDHRPVYSLFSVHVNPANKP 560

[Close]

BLAST of Cp4.1LG01g18630 vs. NCBI nr
Match: gi|703131725|ref|XP_010104946.1| (hypothetical protein L484_004294 [Morus notabilis])

HSP 1 Score: 60.8 bits (146), Expect = 1.2e-06
Identity = 26/42 (61.90%), Postives = 32/42 (76.19%), Query Frame = 1


Query: 3  KCDRVIWNGKGIKQVSYDRGESMLSDHRPVMAMFEHLNNSNT 45
          +CDR+IW GKG+KQ  Y RGE  LSDHRPV A+F +L+  NT
Sbjct: 33 ECDRIIWFGKGLKQTPYGRGEFRLSDHRPVYAIFTYLSIMNT 74

The following BLAST results are available for this feature:

BLAST of Cp4.1LG01g18630 vs. Swiss-Prot


Match Name	E-value	Identity	Description
IP5P5_ARATH	1.4e-07	66.67	Type I inositol polyphosphate 5-phosphatase 5 OS=Arabidopsis thaliana GN=IP5P5 P...	[more]
IP5PA_ARATH	3.0e-07	63.64	Type I inositol polyphosphate 5-phosphatase 10 OS=Arabidopsis thaliana GN=IP5P10...	[more]
IP5P4_ARATH	3.0e-07	63.64	Type I inositol polyphosphate 5-phosphatase 4 OS=Arabidopsis thaliana GN=IP5P4 P...	[more]
IP5P7_ARATH	6.8e-07	55.00	Type IV inositol polyphosphate 5-phosphatase 7 OS=Arabidopsis thaliana GN=IP5P7 ...	[more]
IP5P9_ARATH	6.8e-07	63.64	Type IV inositol polyphosphate 5-phosphatase 9 OS=Arabidopsis thaliana GN=IP5P9 ...	[more]

BLAST of Cp4.1LG01g18630 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A061ET90_THECC	8.0e-07	55.81	Type I inositol-1,4,5-trisphosphate 5-phosphatase CVP2 OS=Theobroma cacao GN=TCM...	[more]
W9S0N6_9ROSA	8.0e-07	61.90	Uncharacterized protein OS=Morus notabilis GN=L484_004294 PE=4 SV=1	[more]
A0A0D2PTK8_GOSRA	8.0e-07	47.30	Uncharacterized protein OS=Gossypium raimondii GN=B456_005G153900 PE=4 SV=1	[more]
K4AS76_SOLLC	1.4e-06	72.73	Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1	[more]
A0A0R0J1K7_SOYBN	1.8e-06	72.73	Uncharacterized protein OS=Glycine max GN=GLYMA_07G107000 PE=4 SV=1	[more]

BLAST of Cp4.1LG01g18630 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G65090.1	7.7e-09	66.67	DNAse I-like superfamily protein	[more]
AT3G63240.1	1.7e-08	63.64	DNAse I-like superfamily protein	[more]
AT5G04980.2	1.7e-08	63.64	DNAse I-like superfamily protein	[more]
AT2G32010.1	3.8e-08	55.00	CVP2 like 1	[more]
AT2G01900.1	3.8e-08	63.64	DNAse I-like superfamily protein	[more]

BLAST of Cp4.1LG01g18630 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778698376\|ref\|XP_004150156.2\|	2.6e-19	51.55	PREDICTED: type I inositol 1,4,5-trisphosphate 5-phosphatase CVP2 [Cucumis sativ...	[more]
gi\|659072729\|ref\|XP_008466917.1\|	1.1e-17	55.10	PREDICTED: type I inositol 1,4,5-trisphosphate 5-phosphatase CVP2 isoform X1 [Cu...	[more]
gi\|659072731\|ref\|XP_008466924.1\|	1.1e-17	55.10	PREDICTED: type I inositol 1,4,5-trisphosphate 5-phosphatase CVP2 isoform X2 [Cu...	[more]
gi\|590629868\|ref\|XP_007027110.1\|	1.2e-06	55.81	Type I inositol-1,4,5-trisphosphate 5-phosphatase CVP2 [Theobroma cacao]	[more]
gi\|703131725\|ref\|XP_010104946.1\|	1.2e-06	61.90	hypothetical protein L484_004294 [Morus notabilis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR005135	Endo/exonuclease/phosphatase

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG01g18630.1	Cp4.1LG01g18630.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005135	Endonuclease/exonuclease/phosphatase	GENE3D	G3DSA:3.60.10.10		coord: 4..39 score: 1.
IPR005135	Endonuclease/exonuclease/phosphatase	unknown	SSF56219	DNase I-like	coord: 4..38 score: 2.

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cp4.1LG01g18630	Carg25257	Silver-seed gourd	carcpeB1228

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cp4.1LG01g18630	Cucurbita pepo (Zucchini)	cpecpeB199
Cp4.1LG01g18630	Cucumber (Gy14) v1	cgycpeB1014
Cp4.1LG01g18630	Cucurbita maxima (Rimu)	cmacpeB318
Cp4.1LG01g18630	Cucurbita maxima (Rimu)	cmacpeB721
Cp4.1LG01g18630	Cucurbita moschata (Rifu)	cmocpeB280
Cp4.1LG01g18630	Cucurbita moschata (Rifu)	cmocpeB673
Cp4.1LG01g18630	Wild cucumber (PI 183967)	cpecpiB418
Cp4.1LG01g18630	Cucumber (Chinese Long) v2	cpecuB420
Cp4.1LG01g18630	Bottle gourd (USVL1VR-Ls)	cpelsiB311
Cp4.1LG01g18630	Watermelon (Charleston Gray)	cpewcgB370
Cp4.1LG01g18630	Watermelon (97103) v1	cpewmB440
Cp4.1LG01g18630	Melon (DHL92) v3.5.1	cpemeB359
Cp4.1LG01g18630	Cucumber (Gy14) v2	cgybcpeB630
Cp4.1LG01g18630	Melon (DHL92) v3.6.1	cpemedB419
Cp4.1LG01g18630	Silver-seed gourd	carcpeB1158
Cp4.1LG01g18630	Cucumber (Chinese Long) v3	cpecucB0522
Cp4.1LG01g18630	Wax gourd	cpewgoB0491