Cp4.1LG01g18460 (gene) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG01g18460
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	RNA-dependent RNA polymerase
Location	Cp4.1LG01 : 15768640 .. 15774551 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTACGAAGGGGAAGACGATCGAGGTATTTGGATTCGGGCGAGAGGTGAGCGCCGGCGAGGTGAAGGAATTTATGGAGAATCACACGGGAGAGGGAACGGTATCGAAGGTGAGGATTTCGGAACCCAAGGACGAAAAAGCCCGGTTGACATACGCGAGGGTGGAATTCAGGAGCAAAGTGGCGGCGGAGTACGTGGTGGAGAAGGCGGAGGCGGAGGAGCGGCTGTGGTTTGGAAGGTGGTATCTGAAGGCGAGGGGAGTGGAGAGGGGGAGGGAGAGGGAGATGAGGGTGGAGAGAATGGAGAAGGTGAGGGTGCAGTTGGGAAGCGTGGTTTGGAAGGAAGAAATGAGGGTGATTTGGAGAGGGGAGAATTGGAGCGTGGAGTATGGAAATGGAATGAGGAAATTGTGGTTTTATTTGAGTTATGGGGTTATCGATTATAAAATGGAGCTCCGGTTTGAGAACATTTTGGGAGTTCAGCTTCGTTGCCCTCACAATTCTTCTTCCAATCTTTTTCTCATTCAAGTTTCTTACTTTTTCCTCCCTCTTTTTTCTTTTTAAATTTACAACTATATCAACATTACGTTCTTTCATGTAAGAAAAAAATTTAAAAAAAAAAGTGTTTATTAAATGATTTTTATACGGCTAAATTATTAGAAATACAAGTCCTCTCTCCCTCAATTTAAACTTGTCAACAAATATATATATTTTTTTAAATACTCTTGAAATAAAAAGAAACATTTTTACAATTGAGTTAAAATAGTTAATATTTTGTTAAACATTTTAAATGTGTTAAAAAAAATAACTAAATTTTCAAAATATCATCATTGTTAGTATACAGAAGGTTATATGAGAACTTTTAAAAGTGATATTAATATCCTTCTAAACTTTTTTTTTTAAATATAATATTTTTTCGTTAATATCCTTAAAATTGAAAAGTAANCTTGTTAGTATATAGAATGTCATGTTTTAAAAATATATGAGAACTTTTAAAAGTGATATTAATATCCTTCTAAACTTTTTTTTTTAAATATAATATTTTTTCGTTAATATCCTTAAAATTGAAAAGTAAGATTATCCCTCAAATATAGATTCACATTTTGAATATTACAATAATAATTTTATTTTATTTTTTATAAAAATTCAAAATTGCTAATATTATTTTTAAGAGTTTAAGAGTTTTTTTTTTTTAAATGTAATAATAACATTAAATGCATTTTTTAATTTTAATTTAAAAAAAAATTAAGATATTCTTGAAACTTCTTAACTTTTTAAATTATATATATATATATATATATAATACTTTTCCTAATACCCTTAAAATTGAAAAAGTAAGATTATTGACGGTTTTGAATATGTATGGCAATGATAATTTTTCTTAATAAAAGTTGAAAAATGCTAATATTATTTTTAAGAGTTTAAGAGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNTATTTTTGAAACTTTTATATATTTTTTTGACTCAACAAATATTTTTTATTATAAGTTAATTACTACATTAATTTATGCAAATAATATTATAGAGTCTTTAAAAACTATAAATGAAGTGTTTTATATTTATGACTTGATTGAAATCTATCAAAAAAAAATGTAGCATACTTTTAACCTTTATTTCTTAAAAATGTATTTACAAACATTTTTAATATATTAAATAAAGTATATTAGAAATAATAAGACTTGTGTTACGTTCATATTTGTGTGGGCATTTAATTTTGGGTTACAACTCAAGTTATGTAGAACTCTTTAACTATACTACATGCTTAATTAATTAATAATTACTAAAATCTAAAATCTAAAATAATAAAAAAAATTAAAAGAAAAATTTACCTTTCAAATTATATTTGATTTTGTTCGAATCGTTTAATTGGCAGTTGCAGGGTGCTCCACGGATTTTCAAGAAATGTCCATCTTCTTCTTCGTCTTCTTCCTCTCAATTCTATTCCAAGGAATCAACTGGTTTCCGCTGGATCAGAGATGTGGATTTCACTCCATCTTCTTGCATTGGACAATCCTTCGCTCTGTGCTTCGAAGTTTCTCCTGGAGATCAGCTTCCTTCTTTCTTCCAAACATTGGTCGGCTACAAAGAAATCTATGGCCCTTTCAAACTGTCCACAGGTTCTGCTTTCTCTTCCAATTCAAATCTCGTNGACTAAAAATGAAGTGTTTTATATTTATGACTTAATTGAAATCTATCAAAAAAAAAAAAAATGTAGCATACTTTTAACCTTTATTTCTTAAAAATCTATTTACAAACATTTTTAATATATTAAATAAAGTGTATTAGAAATAATAAGACTTGTGTTACGTTCATATTTGTGTGGGCATTTATTTTTGGGTTACAACTCAAGTTATGTAGAACTCTTTAACTATACTACATGCTTAATTAATTAATAATTACTAAAATCTAAAATCTAAAATAATAAAAAAAATTAAAAGAAAAATTTACCTTTCAAATTATATTTGATTTTGTTCGAATCGTTTAATTGGCAGTTGCAGGGTGCTCCACGGATTTTCAAGAAATGTCCATCTTCTTCTTCCTCTCAATTCTATTCCAAGGAATCAACTGGTTTCCGCTGGATCAGAGATGTGGATTTCACTCCATCTTCTTGCATTGGACAATCCTTCGCTCTGTGCTTCGAAGTTTCTCCTGGAGATCAGCTTCCTTCTTTCTTCCAAACATTGGTCGGCTACAAAGAAATCTATGGCCCTTTCAAACTGTCCACAGGTTCTGCTTTCTCTTCCAATTCAAATCTCGTTCCTATCGTTACTCCACCGCAACCATTTGATATCCCTTATAAAATTTTGTTCAAAATCAATGCCCTAGTTCAACATGGTTATCTTCCTGGATCAGCGCTGGATGATAAATTCTTCCGCCTGGTTGATCCCAGTCGATTTCGTTCTGACTACATTGAGTATGCCCTAGAAAAATTGTTTAGTTTGAAGGAATGTTGCTATGAACCACAGAAATGGCTCAAGCAGCAATATCTGTCATTCTGCAGCTCTATGCAGCTTCCATGGAAAGCTAATATTTCTTTGGATGATAGCCTCGTCTATGTGCATAGGGTTCAAATTACACCTGCTAGGGTGTATTTTCGTGGTCCGGAGGCGAATCTTTCTAACAGAGTTGTACGTCGCTTTATTGATGATATAGATAATTTTCTTCGCGTTTCTTTTGTTGATGAGGAGTTGGATAAAATTCATTCCAGTGATCTGTCTCCCCGTACGTCTACTGAAAAGATTGAAAGAACTAGTGTTTATGATCGAATATTATCTGTTTTAAGAAATGGTATAGTCATTGGTGGCAAGAAGTTTGAGTTTCTTGCTTTCTCGGCAAGTCAACTTCGTGAAAATTCGTTTTGGATGTTTGCTCCGAGGGAGGGGCTTAATGCAGCAGATATCAGAGAGTGGATGGGTGACTTTCGTGAGATAAGAAATGTGGCGAAATATGCTGCTCGACTTGGTCAATCTTTTGGTTCGTCCAGAAAAACTTTGTGTGTTGAAGAAAATGAAATTGAAGTTATTCCTGATGTAGAAGTTGAACGGAAGAACATCAAATATTGTTTCTCTGATGGGATTGGAAAGATATCCGAAGCATTGGCTGAGATGGTTGCTGAAAAATGTGGTTTGATCAGTCATACACCATCTGCCTTCCAGATCCGATATGCTGGATACAAGGGCGTTGTTGCTGTTGATCCCACATCCAAAAAGAAATTGTCATTAAGAAAGAGTATGTTGAAGTATATGTCACTTGACACTCAACTTGATGTTTTGTCATGGAGCAAGTACCAACCCTGTTTTCTCAACCGTCAGGTCATCAACCTTCTGTCCACTCTCGGAATTCGGGACGATGTTTTTGTGAACCAACAAAAGAAGGCTGTAGATCAGCTTGATTCAATTCTAAGAGATCCATCAAAGGCATTAGAAGTGTTGGAATTGATGTCCCCGGGGGAAATGACTAGTATTCTGAAGGACATGCTTTTGTTTTACAATCCACACGAAGAGCCTTTTCTAAATATGATGCTACGGACGTTTCGAGCTGATAAATTGTTAGATTTGAGGACCAAATCAAGGATATTTGTTCCTAAGGGAAGGACAATGATGGGTTGCCTGGATGAAACCCGGAGCCTTGAGTATGGGCAGGTGTTTATTCACTGCTCTGTCCCTGGGAGATCAAGCGAAAGTAATTTTGTTGTTAAAGGTAAAGTGGTGGTTGCTAAAAATCCCTGTTTACACCCAGGGGATGTGCGTGTGCTCGATGCTGTTGATGTGAAAACTCTGCATCATATGGTGGATTGTGTTGTTTTTCCACAGAAAGGGAAAAGGTAAGCACGCTTATTGTGGATGAATTGTTTATGTATTCATCACATTTCACGGGTTCATGTTCATATGTTTGGCAAATTCATGCACTTCCCGTATATGTTATAGTAATATTTGTAATATGTGCTGTTAGGCCTCACCCAAATGAATGCTCTGGGAGTGATTTAGATGGTGACTTATACTTTGTTTGTTGGGATCCGGAGTTGACTTGTATTAGACCAATTAAACCTATGAGCTACGAGCCTGCACCAACCATTCAGTTGGATCATGATGTGACAATTGAGGTATGCTTTCAGGAACTGTTTACTTCTAGTGCAAACACACACTTCATCTTTTTCTATCTAATAATATACATTGCTGATTTGATTCACTGATTCGAACAGATTGTATTATGAAGCTTGACTAACATGGTATCATTTGAATACAGGAAGTGCAGGAATACTTTGCCAACTACATGGTGAATGATGGTCTTGGTGGGATTGCGAATGCTCACACTGTCTTTGCTGATAAGAAGCCTAAGAAGGCAATGAGTGCTGAATGCATTGAACTTGCAAAATTATTTTCAATTGCTGTTGACTTCCCAAAAACTGGTGTGCCAGCAAACTTGCCGCGCTCTCTTCGTGTCCATCAGTATCCAGACTTCATGGAAAAACCTAATAAACGTTCTTATATATCGAATGGTGTTATCGGGAAGCTTTTTCGAGGAGTGAAAGATGTTTCTTCAGACATCAACAATATTGAAACCTTCACTAGGGAAGTTGCTGCCAAGTGCTACGATCCAGACATGGAAGTTATGGGTTTTGAAAATTATTTAAGTGAAGCTTTTGACTACAAAAGCATGTACGACTTCAAGTTGGGTAACCTAATGGATTATTATGGTATAGAAACAGAACCTGAATTAGTGAGTGGAAATATTCTGAGGATGGGAAAGTCTTTCGATAAAAGGAATGACATGGAACAAATTAGCCTTGCCATGAGGTCACTAAGAAAGGAGGCCAGGGGTTGGTTCAACGAGAAGGGAAGTAAGTCTATCTACAACAACAACAAAGACGAAGACGATGAATATGCAAAAGCATCCGCTTGGTACCATGTTACATATCACCCGAACTTCTGGGGTCGTTACAATGAAGGTATGCAAAGAGATCATTTTTTGAGTTTTCCATGGTGCGTTTCTGAGAAGCTTATTCAAATCAAAAGGGAGAAGATGGAGTCTTCCCCAGTGTCATCTCTGATACACAAATTTGGTAAGCTGAGTTTCTACTAGCTTTAATGGTCAATAATTTTATGAAGTATTTTAATAAGGTTCTCTAATGGTTAAAGTAATAGTAAGGAGATGATGATGTCTGTGTCCTTGAGTTCTAAGATGATTGTGTCCTTGAGTTCTAAGATGATGGAGATGAAAAAGCAAGCTTGAGATCTGGAAATGTGGCTTATTTGTATCTCTTACATTATATTTTCTATAATATGGTCAATGGAGTTTGAGACAAAGTGTTATAGTTATTATAGAACCGATCGGATTGTGTAATTTCCTGTTGTATAATGAATCT

mRNA sequence

ATGGGTACGAAGGGGAAGACGATCGAGGTATTTGGATTCGGGCGAGAGGTGAGCGCCGGCGAGGTGAAGGAATTTATGGAGAATCACACGGGAGAGGGAACGGTATCGAAGGTGAGGATTTCGGAACCCAAGGACGAAAAAGCCCGGTTGACATACGCGAGGGTGGAATTCAGGAGCAAAGTGGCGGCGGAGTACGTGGTGGAGAAGGCGGAGGCGGAGGAGCGGCTGTGGTTTGGAAGGTGGTATCTGAAGGCGAGGGGAGTGGAGAGGGGGAGGGAGAGGGAGATGAGGGTGGAGAGAATGGAGAAGGTGAGGGTGCAGTTGGGAAGCGTGGTTTGGAAGGAAGAAATGAGGGTGATTTGGAGAGGGGAGAATTGGAGCGTGGAGTATGGAAATGGAATGAGGAAATTGTGGTTTTATTTGAGTTATGGGGTTATCGATTATAAAATGGAGCTCCGTTGCAGGGTGCTCCACGGATTTTCAAGAAATGTCCATCTTCTTCTTCGTCTTCTTCCTCTCAATTCTATTCCAAGGAATCAACTGGTTTCCGCTGGATCAGAGATGTGGATTTCACTCCATCTTCTTGCATTGGACAATCCTTCGCTCTGTGCTTCGAAGTTTCTCCTGGAGATCAGCTTCCTTCTTTCTTCCAAACATTGGTCGGCTACAAAGAAATCTATGGCCCTTTCAAACTGTCCACAGTTGCAGGGTGCTCCACGGATTTTCAAGAAATGTCCATCTTCTTCTTCCTCTCAATTCTATTCCAAGGAATCAACTGGTTTCCGCTGGATCAGAGATGTGGATTTCACTCCATCTTCTTGCATTGGACAATCCTTCGCTCTGTGCTTCGAAGTTTCTCCTGGAGATCAGCTTCCTTCTTTCTTCCAAACATTGGTCGGCTACAAAGAAATCTATGGCCCTTTCAAACTGTCCACAGGTTCTGCTTTCTCTTCCAATTCAAATCTCGTTCCTATCGTTACTCCACCGCAACCATTTGATATCCCTTATAAAATTTTGTTCAAAATCAATGCCCTAGTTCAACATGGTTATCTTCCTGGATCAGCGCTGGATGATAAATTCTTCCGCCTGGTTGATCCCAGTCGATTTCGTTCTGACTACATTGAGTATGCCCTAGAAAAATTGTTTAGTTTGAAGGAATGTTGCTATGAACCACAGAAATGGCTCAAGCAGCAATATCTGTCATTCTGCAGCTCTATGCAGCTTCCATGGAAAGCTAATATTTCTTTGGATGATAGCCTCGTCTATGTGCATAGGGTTCAAATTACACCTGCTAGGGTGTATTTTCGTGGTCCGGAGGCGAATCTTTCTAACAGAGTTGTACGTCGCTTTATTGATGATATAGATAATTTTCTTCGCGTTTCTTTTGTTGATGAGGAGTTGGATAAAATTCATTCCAGTGATCTGTCTCCCCGTACGTCTACTGAAAAGATTGAAAGAACTAGTGTTTATGATCGAATATTATCTGTTTTAAGAAATGGTATAGTCATTGGTGGCAAGAAGTTTGAGTTTCTTGCTTTCTCGGCAAGTCAACTTCGTGAAAATTCGTTTTGGATGTTTGCTCCGAGGGAGGGGCTTAATGCAGCAGATATCAGAGAGTGGATGGGTGACTTTCGTGAGATAAGAAATGTGGCGAAATATGCTGCTCGACTTGGTCAATCTTTTGGTTCGTCCAGAAAAACTTTGTGTGTTGAAGAAAATGAAATTGAAGTTATTCCTGATGTAGAAGTTGAACGGAAGAACATCAAATATTGTTTCTCTGATGGGATTGGAAAGATATCCGAAGCATTGGCTGAGATGGTTGCTGAAAAATGTGGTTTGATCAGTCATACACCATCTGCCTTCCAGATCCGATATGCTGGATACAAGGGCGTTGTTGCTGTTGATCCCACATCCAAAAAGAAATTGTCATTAAGAAAGAGTATGTTGAAGTATATGTCACTTGACACTCAACTTGATGTTTTGTCATGGAGCAAGTACCAACCCTGTTTTCTCAACCGTCAGGTCATCAACCTTCTGTCCACTCTCGGAATTCGGGACGATGTTTTTGTGAACCAACAAAAGAAGGCTGTAGATCAGCTTGATTCAATTCTAAGAGATCCATCAAAGGCATTAGAAGTGTTGGAATTGATGTCCCCGGGGGAAATGACTAGTATTCTGAAGGACATGCTTTTGTTTTACAATCCACACGAAGAGCCTTTTCTAAATATGATGCTACGGACGTTTCGAGCTGATAAATTGTTAGATTTGAGGACCAAATCAAGGATATTTGTTCCTAAGGGAAGGACAATGATGGGTTGCCTGGATGAAACCCGGAGCCTTGAGTATGGGCAGGTGTTTATTCACTGCTCTGTCCCTGGGAGATCAAGCGAAAGTAATTTTGTTGTTAAAGGTAAAGTGGTGGTTGCTAAAAATCCCTGTTTACACCCAGGGGATGTGCGTGTGCTCGATGCTGTTGATGTGAAAACTCTGCATCATATGGTGGATTGTGTTGTTTTTCCACAGAAAGGGAAAAGGCCTCACCCAAATGAATGCTCTGGGAGTGATTTAGATGGTGACTTATACTTTGTTTGTTGGGATCCGGAGTTGACTTGTATTAGACCAATTAAACCTATGAGCTACGAGCCTGCACCAACCATTCAGTTGGATCATGATGTGACAATTGAGGAAGTGCAGGAATACTTTGCCAACTACATGGTGAATGATGGTCTTGGTGGGATTGCGAATGCTCACACTGTCTTTGCTGATAAGAAGCCTAAGAAGGCAATGAGTGCTGAATGCATTGAACTTGCAAAATTATTTTCAATTGCTGTTGACTTCCCAAAAACTGGTGTGCCAGCAAACTTGCCGCGCTCTCTTCGTGTCCATCAGTATCCAGACTTCATGGAAAAACCTAATAAACGTTCTTATATATCGAATGGTGTTATCGGGAAGCTTTTTCGAGGAGTGAAAGATGTTTCTTCAGACATCAACAATATTGAAACCTTCACTAGGGAAGTTGCTGCCAAGTGCTACGATCCAGACATGGAAGTTATGGGTTTTGAAAATTATTTAAGTGAAGCTTTTGACTACAAAAGCATGTACGACTTCAAGTTGGGTAACCTAATGGATTATTATGGTATAGAAACAGAACCTGAATTAGTGAGTGGAAATATTCTGAGGATGGGAAAGTCTTTCGATAAAAGGAATGACATGGAACAAATTAGCCTTGCCATGAGGTCACTAAGAAAGGAGGCCAGGGGTTGGTTCAACGAGAAGGGAAGTAAGTCTATCTACAACAACAACAAAGACGAAGACGATGAATATGCAAAAGCATCCGCTTGGTACCATGTTACATATCACCCGAACTTCTGGGGTCGTTACAATGAAGGTATGCAAAGAGATCATTTTTTGAGTTTTCCATGGTGCGTTTCTGAGAAGCTTATTCAAATCAAAAGGGAGAAGATGGAGTCTTCCCCAGTGTCATCTCTGATACACAAATTTGGTAAGCTGAGTTTCTACTAGCTTTAATGGTCAATAATTTTATGAAGTATTTTAATAAGGTTCTCTAATGGTTAAAGTAATAGTAAGGAGATGATGATGTCTGTGTCCTTGAGTTCTAAGATGATTGTGTCCTTGAGTTCTAAGATGATGGAGATGAAAAAGCAAGCTTGAGATCTGGAAATGTGGCTTATTTGTATCTCTTACATTATATTTTCTATAATATGGTCAATGGAGTTTGAGACAAAGTGTTATAGTTATTATAGAACCGATCGGATTGTGTAATTTCCTGTTGTATAATGAATCT

Coding sequence (CDS)

ATGGGTACGAAGGGGAAGACGATCGAGGTATTTGGATTCGGGCGAGAGGTGAGCGCCGGCGAGGTGAAGGAATTTATGGAGAATCACACGGGAGAGGGAACGGTATCGAAGGTGAGGATTTCGGAACCCAAGGACGAAAAAGCCCGGTTGACATACGCGAGGGTGGAATTCAGGAGCAAAGTGGCGGCGGAGTACGTGGTGGAGAAGGCGGAGGCGGAGGAGCGGCTGTGGTTTGGAAGGTGGTATCTGAAGGCGAGGGGAGTGGAGAGGGGGAGGGAGAGGGAGATGAGGGTGGAGAGAATGGAGAAGGTGAGGGTGCAGTTGGGAAGCGTGGTTTGGAAGGAAGAAATGAGGGTGATTTGGAGAGGGGAGAATTGGAGCGTGGAGTATGGAAATGGAATGAGGAAATTGTGGTTTTATTTGAGTTATGGGGTTATCGATTATAAAATGGAGCTCCGTTGCAGGGTGCTCCACGGATTTTCAAGAAATGTCCATCTTCTTCTTCGTCTTCTTCCTCTCAATTCTATTCCAAGGAATCAACTGGTTTCCGCTGGATCAGAGATGTGGATTTCACTCCATCTTCTTGCATTGGACAATCCTTCGCTCTGTGCTTCGAAGTTTCTCCTGGAGATCAGCTTCCTTCTTTCTTCCAAACATTGGTCGGCTACAAAGAAATCTATGGCCCTTTCAAACTGTCCACAGTTGCAGGGTGCTCCACGGATTTTCAAGAAATGTCCATCTTCTTCTTCCTCTCAATTCTATTCCAAGGAATCAACTGGTTTCCGCTGGATCAGAGATGTGGATTTCACTCCATCTTCTTGCATTGGACAATCCTTCGCTCTGTGCTTCGAAGTTTCTCCTGGAGATCAGCTTCCTTCTTTCTTCCAAACATTGGTCGGCTACAAAGAAATCTATGGCCCTTTCAAACTGTCCACAGGTTCTGCTTTCTCTTCCAATTCAAATCTCGTTCCTATCGTTACTCCACCGCAACCATTTGATATCCCTTATAAAATTTTGTTCAAAATCAATGCCCTAGTTCAACATGGTTATCTTCCTGGATCAGCGCTGGATGATAAATTCTTCCGCCTGGTTGATCCCAGTCGATTTCGTTCTGACTACATTGAGTATGCCCTAGAAAAATTGTTTAGTTTGAAGGAATGTTGCTATGAACCACAGAAATGGCTCAAGCAGCAATATCTGTCATTCTGCAGCTCTATGCAGCTTCCATGGAAAGCTAATATTTCTTTGGATGATAGCCTCGTCTATGTGCATAGGGTTCAAATTACACCTGCTAGGGTGTATTTTCGTGGTCCGGAGGCGAATCTTTCTAACAGAGTTGTACGTCGCTTTATTGATGATATAGATAATTTTCTTCGCGTTTCTTTTGTTGATGAGGAGTTGGATAAAATTCATTCCAGTGATCTGTCTCCCCGTACGTCTACTGAAAAGATTGAAAGAACTAGTGTTTATGATCGAATATTATCTGTTTTAAGAAATGGTATAGTCATTGGTGGCAAGAAGTTTGAGTTTCTTGCTTTCTCGGCAAGTCAACTTCGTGAAAATTCGTTTTGGATGTTTGCTCCGAGGGAGGGGCTTAATGCAGCAGATATCAGAGAGTGGATGGGTGACTTTCGTGAGATAAGAAATGTGGCGAAATATGCTGCTCGACTTGGTCAATCTTTTGGTTCGTCCAGAAAAACTTTGTGTGTTGAAGAAAATGAAATTGAAGTTATTCCTGATGTAGAAGTTGAACGGAAGAACATCAAATATTGTTTCTCTGATGGGATTGGAAAGATATCCGAAGCATTGGCTGAGATGGTTGCTGAAAAATGTGGTTTGATCAGTCATACACCATCTGCCTTCCAGATCCGATATGCTGGATACAAGGGCGTTGTTGCTGTTGATCCCACATCCAAAAAGAAATTGTCATTAAGAAAGAGTATGTTGAAGTATATGTCACTTGACACTCAACTTGATGTTTTGTCATGGAGCAAGTACCAACCCTGTTTTCTCAACCGTCAGGTCATCAACCTTCTGTCCACTCTCGGAATTCGGGACGATGTTTTTGTGAACCAACAAAAGAAGGCTGTAGATCAGCTTGATTCAATTCTAAGAGATCCATCAAAGGCATTAGAAGTGTTGGAATTGATGTCCCCGGGGGAAATGACTAGTATTCTGAAGGACATGCTTTTGTTTTACAATCCACACGAAGAGCCTTTTCTAAATATGATGCTACGGACGTTTCGAGCTGATAAATTGTTAGATTTGAGGACCAAATCAAGGATATTTGTTCCTAAGGGAAGGACAATGATGGGTTGCCTGGATGAAACCCGGAGCCTTGAGTATGGGCAGGTGTTTATTCACTGCTCTGTCCCTGGGAGATCAAGCGAAAGTAATTTTGTTGTTAAAGGTAAAGTGGTGGTTGCTAAAAATCCCTGTTTACACCCAGGGGATGTGCGTGTGCTCGATGCTGTTGATGTGAAAACTCTGCATCATATGGTGGATTGTGTTGTTTTTCCACAGAAAGGGAAAAGGCCTCACCCAAATGAATGCTCTGGGAGTGATTTAGATGGTGACTTATACTTTGTTTGTTGGGATCCGGAGTTGACTTGTATTAGACCAATTAAACCTATGAGCTACGAGCCTGCACCAACCATTCAGTTGGATCATGATGTGACAATTGAGGAAGTGCAGGAATACTTTGCCAACTACATGGTGAATGATGGTCTTGGTGGGATTGCGAATGCTCACACTGTCTTTGCTGATAAGAAGCCTAAGAAGGCAATGAGTGCTGAATGCATTGAACTTGCAAAATTATTTTCAATTGCTGTTGACTTCCCAAAAACTGGTGTGCCAGCAAACTTGCCGCGCTCTCTTCGTGTCCATCAGTATCCAGACTTCATGGAAAAACCTAATAAACGTTCTTATATATCGAATGGTGTTATCGGGAAGCTTTTTCGAGGAGTGAAAGATGTTTCTTCAGACATCAACAATATTGAAACCTTCACTAGGGAAGTTGCTGCCAAGTGCTACGATCCAGACATGGAAGTTATGGGTTTTGAAAATTATTTAAGTGAAGCTTTTGACTACAAAAGCATGTACGACTTCAAGTTGGGTAACCTAATGGATTATTATGGTATAGAAACAGAACCTGAATTAGTGAGTGGAAATATTCTGAGGATGGGAAAGTCTTTCGATAAAAGGAATGACATGGAACAAATTAGCCTTGCCATGAGGTCACTAAGAAAGGAGGCCAGGGGTTGGTTCAACGAGAAGGGAAGTAAGTCTATCTACAACAACAACAAAGACGAAGACGATGAATATGCAAAAGCATCCGCTTGGTACCATGTTACATATCACCCGAACTTCTGGGGTCGTTACAATGAAGGTATGCAAAGAGATCATTTTTTGAGTTTTCCATGGTGCGTTTCTGAGAAGCTTATTCAAATCAAAAGGGAGAAGATGGAGTCTTCCCCAGTGTCATCTCTGATACACAAATTTGGTAAGCTGAGTTTCTACTAG

Protein sequence

MGTKGKTIEVFGFGREVSAGEVKEFMENHTGEGTVSKVRISEPKDEKARLTYARVEFRSKVAAEYVVEKAEAEERLWFGRWYLKARGVERGREREMRVERMEKVRVQLGSVVWKEEMRVIWRGENWSVEYGNGMRKLWFYLSYGVIDYKMELRCRVLHGFSRNVHLLLRLLPLNSIPRNQLVSAGSEMWISLHLLALDNPSLCASKFLLEISFLLSSKHWSATKKSMALSNCPQLQGAPRIFKKCPSSSSSQFYSKESTGFRWIRDVDFTPSSCIGQSFALCFEVSPGDQLPSFFQTLVGYKEIYGPFKLSTGSAFSSNSNLVPIVTPPQPFDIPYKILFKINALVQHGYLPGSALDDKFFRLVDPSRFRSDYIEYALEKLFSLKECCYEPQKWLKQQYLSFCSSMQLPWKANISLDDSLVYVHRVQITPARVYFRGPEANLSNRVVRRFIDDIDNFLRVSFVDEELDKIHSSDLSPRTSTEKIERTSVYDRILSVLRNGIVIGGKKFEFLAFSASQLRENSFWMFAPREGLNAADIREWMGDFREIRNVAKYAARLGQSFGSSRKTLCVEENEIEVIPDVEVERKNIKYCFSDGIGKISEALAEMVAEKCGLISHTPSAFQIRYAGYKGVVAVDPTSKKKLSLRKSMLKYMSLDTQLDVLSWSKYQPCFLNRQVINLLSTLGIRDDVFVNQQKKAVDQLDSILRDPSKALEVLELMSPGEMTSILKDMLLFYNPHEEPFLNMMLRTFRADKLLDLRTKSRIFVPKGRTMMGCLDETRSLEYGQVFIHCSVPGRSSESNFVVKGKVVVAKNPCLHPGDVRVLDAVDVKTLHHMVDCVVFPQKGKRPHPNECSGSDLDGDLYFVCWDPELTCIRPIKPMSYEPAPTIQLDHDVTIEEVQEYFANYMVNDGLGGIANAHTVFADKKPKKAMSAECIELAKLFSIAVDFPKTGVPANLPRSLRVHQYPDFMEKPNKRSYISNGVIGKLFRGVKDVSSDINNIETFTREVAAKCYDPDMEVMGFENYLSEAFDYKSMYDFKLGNLMDYYGIETEPELVSGNILRMGKSFDKRNDMEQISLAMRSLRKEARGWFNEKGSKSIYNNNKDEDDEYAKASAWYHVTYHPNFWGRYNEGMQRDHFLSFPWCVSEKLIQIKREKMESSPVSSLIHKFGKLSFY

Homology

[Close]

BLAST of Cp4.1LG01g18460 vs. Swiss-Prot
Match: RDR1_ARATH (RNA-dependent RNA polymerase 1 OS=Arabidopsis thaliana GN=RDR1 PE=2 SV=1)

HSP 1 Score: 1122.8 bits (2903), Expect = 0.0e+00
Identity = 569/929 (61.25%), Postives = 697/929 (75.03%), Query Frame = 1


Query: 234  QLQGAPRIFKKCPSSSSSQF----YSKESTGFRWIRDVDFTPSSCIGQSFALCFEVSPGD 293
            Q+ GAP+IF+K     +  F    +  + +  +WIR  DFT SSCIGQS A C E+    
Sbjct: 172  QVIGAPKIFEKEDQPINLLFGIMDFYSDGSDEQWIRTTDFTSSSCIGQSTAFCLELPVHL 231

Query: 294  QLPSFFQTLVGYKEIYGP-FKLSTGSAFSSNSN-LVPIVTPPQPFDIPYKILFKINALVQ 353
             +P F +    Y E     F + +GS++SSN+N LVP+V PP  F +P++ILFK+N LVQ
Sbjct: 232  NVPDFRENFANYAEHRASSFLIESGSSYSSNANTLVPVVDPPPGFSLPFEILFKLNTLVQ 291

Query: 354  HGYLPGSALDDKFFRLVDPSRFRSDYIEYALEKLFSLKECCYEPQKWLKQQYLSFCSSMQ 413
            +  L G ALD  F+RL++  ++    I++ LEKLF L ECCYEP  WL+ +Y  + S  +
Sbjct: 292  NACLSGPALDLDFYRLLNQKKYDRALIDHCLEKLFHLGECCYEPAHWLRDEYKKWISKGK 351

Query: 414  LPWKANISLDDSLVYVHRVQITPARVYFRGPEANLSNRVVRRFIDDIDNFLRVSFVDEEL 473
            LP    ISLDD LVY++RVQ+TPARVYF GPE N+SNRV+R +   I+NFLRVSFVDE+L
Sbjct: 352  LPLSPTISLDDGLVYMYRVQVTPARVYFSGPEVNVSNRVLRHYSKYINNFLRVSFVDEDL 411

Query: 474  DKIHSSDLSPRTSTEKIERTSVYDRILSVLRNGIVIGGKKFEFLAFSASQLRENSFWMFA 533
            +K+ S DLSPR+ST++  RT +YDRI SVLR+GIVIG KKFEFLAFS+SQLRENS WMFA
Sbjct: 412  EKVRSMDLSPRSSTQR--RTKLYDRIYSVLRDGIVIGDKKFEFLAFSSSQLRENSAWMFA 471

Query: 534  PREGLNAADIREWMGDFREIRNVAKYAARLGQSFGSSRKTLCVEENEIEVIPDVEVERKN 593
            P + + AA IR WMGDF  IRNVAKYAARLGQSF SSR+TL V  +EIEVIPDVE+    
Sbjct: 472  PIDRITAAHIRAWMGDFDHIRNVAKYAARLGQSFSSSRETLNVRSDEIEVIPDVEIISLG 531

Query: 594  IKYCFSDGIGKISEALAEMVAEKCGLISHTPSAFQIRYAGYKGVVAVDPTSKKKLSLRKS 653
             +Y FSDGIGKIS   A  VA KCGL   +PSAFQIRY GYKGVVAVDP S KKLSLRKS
Sbjct: 532  TRYVFSDGIGKISAEFARKVARKCGLTEFSPSAFQIRYGGYKGVVAVDPNSSKKLSLRKS 591

Query: 654  MLKYMSLDTQLDVLSWSKYQPCFLNRQVINLLSTLGIRDDVFVNQQKKAVDQLDSILRDP 713
            M K+ S +T+LDVL+WSKYQPC++NRQ+I LLSTLG+ D VF  +Q++ VD+LD+IL  P
Sbjct: 592  MSKFESENTKLDVLAWSKYQPCYMNRQLITLLSTLGVTDSVFEKKQREVVDRLDAILTHP 651

Query: 714  SKALEVLELMSPGEMTSILKDMLLF-YNPHEEPFLNMMLRTFRADKLLDLRTKSRIFVPK 773
             +A E L LM+PGE T+ILK ++L  Y P  EPFL+MML+ FRA KLL+LRTK+RIF+  
Sbjct: 652  LEAHEALGLMAPGENTNILKALILCGYKPDAEPFLSMMLQNFRASKLLELRTKTRIFISG 711

Query: 774  GRTMMGCLDETRSLEYGQVFIHCSVPGRSSESNFVVKGKVVVAKNPCLHPGDVRVLDAVD 833
            GR+MMGCLDETR+LEYGQV +  S P R     F++ G VVVAKNPCLHPGDVRVL AV+
Sbjct: 712  GRSMMGCLDETRTLEYGQVVVQYSDPMRPGR-RFIITGPVVVAKNPCLHPGDVRVLQAVN 771

Query: 834  VKTLHHMVDCVVFPQKGKRPHPNECSGSDLDGDLYFVCWDPELTCIRPIKPMSYEPAPTI 893
            V  L+HMVDCVVFPQKG RPHPNECSGSDLDGD+YFVCWD EL   R  +PM Y P PT 
Sbjct: 772  VPALNHMVDCVVFPQKGLRPHPNECSGSDLDGDIYFVCWDQELVPPRTSEPMDYTPEPTQ 831

Query: 894  QLDHDVTIEEVQEYFANYMVNDGLGGIANAHTVFADKKPKKAMSAECIELAKLFSIAVDF 953
             LDHDVTIEEV+EYFANY+VND LG IANAHT FADK+P KA S  CIELAK FS AVDF
Sbjct: 832  ILDHDVTIEEVEEYFANYIVNDSLGIIANAHTAFADKEPLKAFSDPCIELAKKFSTAVDF 891

Query: 954  PKTGVPANLPRSLRVHQYPDFMEKPNKRSYISNGVIGKLFRGVKDVSSDINNIETFTREV 1013
            PKTGV A +P+ L V +YPDFMEKP+K +Y S  VIGKLFR VK+ +  + +I++FT +V
Sbjct: 892  PKTGVAAVIPQHLYVKEYPDFMEKPDKPTYESKNVIGKLFREVKERAPPLISIKSFTLDV 951

Query: 1014 AAKCYDPDMEVMGFENYLSEAFDYKSMYDFKLGNLMDYYGIETEPELVSGNILRMGKSFD 1073
            A+K YD DMEV GFE Y+ EAF  K+ YDFKLGNLMDYYGI+TE E++SG I+RM KSF 
Sbjct: 952  ASKSYDKDMEVDGFEEYVDEAFYQKANYDFKLGNLMDYYGIKTEAEILSGGIMRMSKSFT 1011

Query: 1074 KRNDMEQISLAMRSLRKEARGWFNEKGSKSIYNNNKDEDDEYAKASAWYHVTYHPNFWGR 1133
            KR D E I  A+R+LRKE         + S++N +++E++E AKASAWYHVTYH ++WG 
Sbjct: 1012 KRRDAESIGRAVRALRKE---------TLSLFNASEEEENESAKASAWYHVTYHSSYWGL 1071

Query: 1134 YNEGMQRDHFLSFPWCVSEKLIQIKREKM 1156
            YNEG+ RDHFLSF WCV +KL++IK+  +
Sbjct: 1072 YNEGLNRDHFLSFAWCVYDKLVRIKKTNL 1088

[Close]

BLAST of Cp4.1LG01g18460 vs. Swiss-Prot
Match: RDR1_ORYSJ (Probable RNA-dependent RNA polymerase 1 OS=Oryza sativa subsp. japonica GN=RDR1 PE=2 SV=2)

HSP 1 Score: 915.6 bits (2365), Expect = 5.5e-265
Identity = 457/724 (63.12%), Postives = 564/724 (77.90%), Query Frame = 1


Query: 433  VYFRGPEANLSNRVVRRFIDDIDNFLRVSFVDEELDKIHSSDLSPRTST-EKIERTSVYD 492
            VYF GPE N+SNRVVR F  DI+NFLR+SFVDE+ +K+ ++DLSPR+++     RT++Y 
Sbjct: 9    VYFYGPEINVSNRVVRNFSSDIENFLRISFVDEDCEKLRATDLSPRSASGHDANRTALYK 68

Query: 493  RILSVLRNGIVIGGKKFEFLAFSASQLRENSFWMFAPREGLNAADIREWMGDFREIRNVA 552
            R+LSVL +GI IGGK FEFLAFS+SQLR+NS WMFA R+GL A+DIR WMGDFR IRNVA
Sbjct: 69   RVLSVLSDGITIGGKNFEFLAFSSSQLRDNSAWMFASRQGLAASDIRTWMGDFRNIRNVA 128

Query: 553  KYAARLGQSFGSSRKTLCVEENEIEVIPDVEVERKNIKYCFSDGIGKISEALAEMVAEKC 612
            KYAARLGQSF SS +TL V++ E+E I D+   +   ++ FSDGIGKIS A A  VA KC
Sbjct: 129  KYAARLGQSFSSSTETLKVQKYEVEEISDI---KNGTQHVFSDGIGKISSAFANEVAMKC 188

Query: 613  GLISHTPSAFQIRYAGYKGVVAVDPTSKKKLSLRKSMLKYMSLDTQLDVLSWSKYQPCFL 672
             L    PSAFQIRY GYKGVVAVDPTS+ KLSLRKSMLK+ S +  +DVL++SKYQP FL
Sbjct: 189  NLKRFAPSAFQIRYGGYKGVVAVDPTSRWKLSLRKSMLKFQSDNITVDVLAYSKYQPGFL 248

Query: 673  NRQVINLLSTLGIRDDVFVNQQKKAVDQLDSILRDPSKALEVLELMSPGEMTSILKDMLL 732
            NRQ+I LLSTLG+RD VF  +Q++AV+QL+ ++ DP  A+E +ELM  GE+T+ +K++LL
Sbjct: 249  NRQLITLLSTLGVRDSVFEQKQEEAVNQLNKMVTDPQAAIEAIELMPMGEITNAVKELLL 308

Query: 733  F-YNPHEEPFLNMMLRTFRADKLLDLRTKSRIFVPKGRTMMGCLDETRSLEYGQVFIHCS 792
              Y P +EP+L+M+L+TFRA KLL+L+TKSRI +PKGR MMGCLDETR+L+YGQVFI  +
Sbjct: 309  CGYQPDDEPYLSMLLQTFRASKLLELKTKSRILIPKGRAMMGCLDETRTLKYGQVFIRAT 368

Query: 793  VPGRSSESNFVVKGKVVVAKNPCLHPGDVRVLDAVDVKTLHHMVDCVVFPQKGKRPHPNE 852
              G +    F V GKVV+AKNPCLHPGD+R+L AVDV  LHHM +CVVFPQ+G RPHPNE
Sbjct: 369  -SGVNDNDRFTVTGKVVIAKNPCLHPGDIRILHAVDVPVLHHMFNCVVFPQQGPRPHPNE 428

Query: 853  CSGSDLDGDLYFVCWDPELTCIRPIKPMSYEPAPTIQLDHDVTIEEVQEYFANYMVNDGL 912
            CSGSDLDGD+YFV WDP L   R + PM Y PAPT  LDHDVTIEEV+EYF NY+VN+ L
Sbjct: 429  CSGSDLDGDIYFVSWDPSLIPPRMVTPMDYTPAPTETLDHDVTIEEVEEYFTNYIVNESL 488

Query: 913  GGIANAHTVFADKKPKKAMSAECIELAKLFSIAVDFPKTGVPANLPRSLRVHQYPDFMEK 972
            G IANAH VFADK+  KA S+ CIELAKLFSIAVDFPKTGVPA +P  L V +YPDFMEK
Sbjct: 489  GMIANAHVVFADKEDLKAESSPCIELAKLFSIAVDFPKTGVPALIPPELHVKEYPDFMEK 548

Query: 973  PNKRSYISNGVIGKLFRGVKDVSSDINNIETFTREVAAKCYDPDMEVMGFENYLSEAFDY 1032
             +K +Y S GVIGKL+R +K       +I+ FTREVA + YD DM V G+E+Y++EA   
Sbjct: 549  LDKVTYESKGVIGKLYREIK---KHTPHIKHFTREVARRSYDTDMIVDGYEDYITEAMAL 608

Query: 1033 KSMYDFKLGNLMDYYGIETEPELVSGNILRMGKSFDKRNDMEQISLAMRSLRKEARGWFN 1092
            K  YDFKLGNLMD+YGI++E E++SG IL+M K+F K++D + I LA+RSLRKEAR  F+
Sbjct: 609  KDEYDFKLGNLMDHYGIKSEAEIISGCILKMAKNFTKKSDADAIRLAVRSLRKEARSRFS 668

Query: 1093 EKGSKSIYNNNKDEDDEYAKASAWYHVTYHPNFWGRYNEGMQRDHFLSFPWCVSEKLIQI 1152
            E    S+ +N    D   AKASAWYHVTYHP FWG YNEG +R HF+SFPWC+ EKL++I
Sbjct: 669  E---MSLDDNGHGHDASEAKASAWYHVTYHPEFWGCYNEGYERPHFISFPWCIYEKLLRI 722

Query: 1153 KREK 1155
            K+ +
Sbjct: 729  KQRR 722

[Close]

BLAST of Cp4.1LG01g18460 vs. Swiss-Prot
Match: RDR2_ARATH (RNA-dependent RNA polymerase 2 OS=Arabidopsis thaliana GN=RDR2 PE=1 SV=1)

HSP 1 Score: 721.8 bits (1862), Expect = 1.2e-206
Identity = 407/964 (42.22%), Postives = 577/964 (59.85%), Query Frame = 1


Query: 234  QLQGAPRIFKKCPSSSSSQFYS------KESTGFRWIRDVDFTPSSCIGQSFALCFEVSP 293
            +L+  P++FK+     +++F S      KE   F WIR  DF+ S  IG S   C EV  
Sbjct: 184  KLKYGPKVFKRVTVHIATKFKSDRYRFCKEDFDFMWIRTTDFSGSKSIGTSTCFCLEVHN 243

Query: 294  GDQLPSFFQTLVGYKEIYGPFKLSTGSAFSSNSNLVPIVTPP-QPFDIPYKILFKINALV 353
            G  +   F  L  Y+E         G  F+S + +VP++       + PY+ILF++NALV
Sbjct: 244  GSTMLDIFSGLPYYREDTLSLTYVDGKTFASAAQIVPLLNAAILGLEFPYEILFQLNALV 303

Query: 354  QHGYLPGSALDD-KFFRLVDPSRFRSDYIEYALEKLFSLKECCYEPQKWLKQQYLSFCSS 413
                +   A  D +  +++      +  +   L+KL      CY+P  ++K Q  S    
Sbjct: 304  HAQKISLFAASDMELIKILRGMSLETALV--ILKKLHQQSSICYDPVFFVKTQMQSVVKK 363

Query: 414  MQ-LPWKANISL-DDSLVYVHRVQITPARVYFRGPEANLSNRVVRRFIDDIDNFLRVSFV 473
            M+  P  A   L + +++   R  +TP+++Y  GPE   +N VV+ F + + +F+RV+FV
Sbjct: 364  MKHSPASAYKRLTEQNIMSCQRAYVTPSKIYLLGPELETANYVVKNFAEHVSDFMRVTFV 423

Query: 474  DEELDKIHSSDLSPRTSTE---KIERTSVYDRILSVLRNGIVIGGKKFEFLAFSASQLRE 533
            +E+  K+ ++ LS  +      K  RT++Y+R+LS+L  GI +G K+FEFLAFSASQLR 
Sbjct: 424  EEDWSKLPANALSVNSKEGYFVKPSRTNIYNRVLSILGEGITVGPKRFEFLAFSASQLRG 483

Query: 534  NSFWMFAPREGLNAADIREWMGDFREIRNVAKYAARLGQSFGSSRKTLCVEENEIEVIPD 593
            NS WMFA  E + A DIREWMG FR+IR+++K AAR+GQ F +SR+TL V   ++E IPD
Sbjct: 484  NSVWMFASNEKVKAEDIREWMGCFRKIRSISKCAARMGQLFSASRQTLIVRAQDVEQIPD 543

Query: 594  VEVERKNIKYCFSDGIGKISEALAEMVAEKCGLISHTPSAFQIRYAGYKGVVAVDPTSKK 653
            +EV      YCFSDGIGKIS A A+ VA+KCGL SH PSAFQIRY GYKGV+AVD +S +
Sbjct: 544  IEVTTDGADYCFSDGIGKISLAFAKQVAQKCGL-SHVPSAFQIRYGGYKGVIAVDRSSFR 603

Query: 654  KLSLRKSMLKYMSLDTQLDVLSWSKYQPCFLNRQVINLLSTLGIRDDVFVNQQKKAVDQL 713
            KLSLR SMLK+ S +  L+V  W++  PCFLNR++I LLSTLGI D +F   Q   +  L
Sbjct: 604  KLSLRDSMLKFDSNNRMLNVTRWTESMPCFLNREIICLLSTLGIEDAMFEAMQAVHLSML 663

Query: 714  DSILRDPSKALEVLELMSPGEMTSILKDMLLF-YNPHEEPFLNMMLRTFRADKLLDLRTK 773
             ++L D   AL VL+ +S     ++L  MLL  Y P  EP+L+MMLR     +L +L+++
Sbjct: 664  GNMLEDRDAALNVLQKLSGENSKNLLVKMLLQGYAPSSEPYLSMMLRVHHESQLSELKSR 723

Query: 774  SRIFVPKGRTMMGCLDETRSLEYGQVFIHCSVPG------------RSSESNFVVKGKVV 833
             RI VPKGR ++GC+DE   LEYGQV++  ++              +  E   VV GKVV
Sbjct: 724  CRILVPKGRILIGCMDEMGILEYGQVYVRVTLTKAELKSRDQSYFRKIDEETSVVIGKVV 783

Query: 834  VAKNPCLHPGDVRVLDAVDVKTLHHM--VDCVVFPQKGKRPHPNECSGSDLDGDLYFVCW 893
            V KNPCLHPGD+RVLDA+          +DC++FPQKG+RPHPNECSG DLDGD +FV W
Sbjct: 784  VTKNPCLHPGDIRVLDAIYEVHFEEKGYLDCIIFPQKGERPHPNECSGGDLDGDQFFVSW 843

Query: 894  DPELTCIRPIKPMSYEPAPTIQLDHDVTIEEVQEYFANYMVNDGLGGIANAHTVFADKKP 953
            D ++       PM Y  +    +DHDVT+EE+ ++F +YM++D LG I+ AH V AD+ P
Sbjct: 844  DEKIIPSEMDPPMDYAGSRPRLMDHDVTLEEIHKFFVDYMISDTLGVISTAHLVHADRDP 903

Query: 954  KKAMSAECIELAKLFSIAVDFPKTGVPANLPRSLRVHQYPDFMEKPNKRSYISNGVIGKL 1013
            +KA S +C+ELA L S AVDF KTG PA +P +L+  ++PDF+E+  K +YIS  V GKL
Sbjct: 904  EKARSQKCLELANLHSRAVDFAKTGAPAEMPYALKPREFPDFLERFEKPTYISESVFGKL 963

Query: 1014 FRGVKDVSSDINNIETFTREVAAKCYDPDMEVMGFENYLSEAFDYKSMYDFKLGNLMDYY 1073
            +R VK   S +   +          YD  +E  GFE+++  A  ++ MY  KL +LM YY
Sbjct: 964  YRAVK---SSLAQRKPEAESEDTVAYDVTLEEAGFESFIETAKAHRDMYGEKLTSLMIYY 1023

Query: 1074 GIETEPELVSGNILRMGKSFDKRND------MEQISLAMRSLRKEARGWFNEKGSKSIYN 1133
            G   E E+++G IL+  + +  R++       ++I+L+++ L KEA GWF +        
Sbjct: 1024 GAANEEEILTG-ILKTKEMYLARDNRRYGDMKDRITLSVKDLHKEAMGWFEK-------- 1083

Query: 1134 NNKDEDDEYAKASAWYHVTYHPNFWGRYNEGMQRDH---FLSFPWCVSEKLIQIKREKME 1161
            + +DE  +   ASAWY+VTY+PN          RD    FLSFPW V + L+ IK E  +
Sbjct: 1084 SCEDEQQKKKLASAWYYVTYNPN---------HRDEKLTFLSFPWIVGDVLLDIKAENAQ 1123

[Close]

BLAST of Cp4.1LG01g18460 vs. Swiss-Prot
Match: RDR2_ORYSJ (Probable RNA-dependent RNA polymerase 2 OS=Oryza sativa subsp. japonica GN=RDR2 PE=2 SV=1)

HSP 1 Score: 719.2 bits (1855), Expect = 7.5e-206
Identity = 400/952 (42.02%), Postives = 575/952 (60.40%), Query Frame = 1


Query: 234  QLQGAPRIFKKCPSSS-SSQFYS------KESTGFRWIRDVDFTPSSCIGQSFALCFEVS 293
            QL  APRI       + +S+F        KE   F W+R +DFTP+   G+   L  ++ 
Sbjct: 181  QLNYAPRIHTAISGPAVNSRFMDDRFHACKEDAKFSWVRALDFTPNYSFGRCSTLVLKLG 240

Query: 294  PGDQLPSFFQTLVGYKEIYGPFKLSTGSAFSSNSNLVPIVTPPQPFDIPYKILFKINALV 353
                +    ++L  +    G   +++     ++SN+VP+V  P+ + +PY++LF++N+L+
Sbjct: 241  KSALVSDILKSLP-FSGNLGELTMNSMDGVGASSNVVPLVHCPRDYSVPYEVLFRLNSLM 300

Query: 354  QHGYLPGSALDDKFFRLVDPSRFRSDYIEYALEKLFSLKECCYEPQKWLKQQYLSFCSS- 413
              G +    ++   F+ +       D      EK+  L+  CY P ++++Q+  S   S 
Sbjct: 301  HMGKIVAKHVNADLFKALQ--ELPVDVSRRIFEKMHKLESTCYGPLQFIQQEAYSMKRSH 360

Query: 414  -MQLPWKANISLDDSLVYVHRVQITPARVYFRGPEANLSNRVVRRFIDDIDNFLRVSFVD 473
             + L  +     +  L+  +RV ITP++++  GPE  ++N VV+       +F+RV+FVD
Sbjct: 361  NVLLSNEGEGEGERKLMKCYRVNITPSKIFCFGPEEEVTNYVVKHHSAYASDFVRVTFVD 420

Query: 474  EELDKIHSSDLSPRTST---EKIERTSVYDRILSVLRNGIVIGGKKFEFLAFSASQLREN 533
            E+  K+ S+ +S R       K  +T +Y RILS+L+ G  IG K FEFLAFSASQLR N
Sbjct: 421  EDWSKLSSNAISARIEQGFFSKPFKTGLYYRILSILKKGFSIGPKNFEFLAFSASQLRGN 480

Query: 534  SFWMFAPREGLNAADIREWMGDFREIRNVAKYAARLGQSFGSSRKTLCVEENEIEVIPDV 593
            S WMFA    LNA  IR WMG F  IR+V+K AAR+GQ F SSR+T  V   ++EVIPD+
Sbjct: 481  SVWMFASNASLNAGGIRRWMGHFENIRSVSKCAARMGQLFSSSRQTFEVLRWDVEVIPDI 540

Query: 594  EVERKNIKYCFSDGIGKISEALAEMVAEKCGLI-SHTPSAFQIRYAGYKGVVAVDPTSKK 653
            E+     KY FSDGIGKIS   A+ VA   GL  ++ PSAFQIRY GYKGV+A+DP S  
Sbjct: 541  EITTDGSKYIFSDGIGKISLRFAKRVAHHVGLDPTNLPSAFQIRYGGYKGVIAIDPMSSI 600

Query: 654  KLSLRKSMLKYMSLDTQLDVLSWSKYQPCFLNRQVINLLSTLGIRDDVFVNQQKKAVDQL 713
             LSLR SM K+ S    L++ SWSK QPC++NR++I+LLSTLGIRD++FV  Q+  + + 
Sbjct: 601  DLSLRPSMKKFESESRMLNITSWSKSQPCYVNREIISLLSTLGIRDEIFVAMQQDEMRET 660

Query: 714  DSILRDPSKALEVLELMSPGEMTSILKDMLLFYNPHEEPFLNMMLRTFRADKLLDLRTKS 773
            + +L +   AL VL  +   E  + +K +L  Y P  EP+L+M+L+  + ++L D+RT+ 
Sbjct: 661  EEMLTNKEVALSVLGKLGGSETKTAVKMLLQGYEPSSEPYLSMILKAHQENRLTDIRTRC 720

Query: 774  RIFVPKGRTMMGCLDETRSLEYGQVFIHCSVPGR----SSESNF--------VVKGKVVV 833
            +I VPKGR ++GCLDET  LEYGQV+I  +   +    S++S F         V GKV +
Sbjct: 721  KIHVPKGRVLIGCLDETGVLEYGQVYIRITKNSKEQKDSNQSYFYNDDGKTATVVGKVAI 780

Query: 834  AKNPCLHPGDVRVLDAVDVKTLHHMVDCVVFPQKGKRPHPNECSGSDLDGDLYFVCWDPE 893
             KNPCLHPGD+RVL+A+    L  MVDC+VFPQ+G+RPHPNECSG DLDGDLYF+ WD +
Sbjct: 781  TKNPCLHPGDIRVLEAIYDPDLVGMVDCLVFPQRGERPHPNECSGGDLDGDLYFITWDDK 840

Query: 894  LTCIRPIKPMSYEPAPTIQLDHDVTIEEVQEYFANYMVNDGLGGIANAHTVFADKKPKKA 953
            L   +   PM Y       +DH VT+EE+Q++F +YM+ND LG I+ AH + AD+ P KA
Sbjct: 841  LIPEKVDTPMDYTATRPRIMDHVVTLEEIQKHFVDYMINDSLGAISTAHLIHADRSPLKA 900

Query: 954  MSAECIELAKLFSIAVDFPKTGVPANLPRSLRVHQYPDFMEKPNKRSYISNGVIGKLFR- 1013
             S EC++LA L S+AVDF KTG PA +PR+LR  +YPDFME+  K  YISNGV+GKL+R 
Sbjct: 901  RSPECLQLATLHSMAVDFAKTGAPAEMPRTLRPREYPDFMERWEKPMYISNGVLGKLYRS 960

Query: 1014 --GVKDVSSDINNIETFTREVAAKCYDPDMEVMGFENYLSEAFDYKSMYDFKLGNLMDYY 1073
              G  + S D   + + + +  +  YDPD+EV G + +L  A +Y  +Y+ KL  LM+YY
Sbjct: 961  AMGHMEKSGDSGALSSSSAQ-PSPTYDPDLEVPGSDEFLQAAEEYYELYEEKLTTLMNYY 1020

Query: 1074 GIETEPELVSGNILRMGKSFDKRND------MEQISLAMRSLRKEARGWFNEKGSKSIYN 1133
              E E E+++GNI R    + KR++       ++I  A+ +L +EARGW           
Sbjct: 1021 RAELEDEILTGNI-RNKMLYLKRDNKRYFEMKDRIVAAVDALHREARGWL---------L 1080

Query: 1134 NNKDEDDEYAKASAWYHVTYHPNFWGRYNEGMQRDHFLSFPWCVSEKLIQIK 1152
            +++ E+D    ASAWY VTYHP       +  +   F SFPW   + L+ IK
Sbjct: 1081 SSRKEEDASRMASAWYRVTYHP-------DRRRGKRFWSFPWIACDNLLAIK 1111

[Close]

BLAST of Cp4.1LG01g18460 vs. Swiss-Prot
Match: RDR6_ARATH (RNA-dependent RNA polymerase 6 OS=Arabidopsis thaliana GN=RDR6 PE=1 SV=1)

HSP 1 Score: 564.7 bits (1454), Expect = 2.4e-159
Identity = 363/944 (38.45%), Postives = 521/944 (55.19%), Query Frame = 1


Query: 263  WIRDVDFTPSSCIGQSFALCFEVSPGDQ------LPSFFQTLVGYKEIYGPFKLSTGSAF 322
            WIR  DFT    IG+  +    +SP  +      L  F    V  + +  P ++     F
Sbjct: 250  WIRTTDFTQVGAIGRCHSYRVLISPRYENKLRTALDYFRMRRVQEERVRWPPRIRNEPCF 309

Query: 323  SSNSNLVPIVTPPQPFDIPYKILFKINALVQHGYLPGSALDDKFFRLVDPSRFRSDYIEY 382
                +            I ++I+F +N+++  G      L ++FF L+       D    
Sbjct: 310  GEPVS-DHFFCIHHKEGISFEIMFLVNSVLHRGVFNQFQLTERFFDLLRNQP--KDVNIA 369

Query: 383  ALEKLFSLKECCYEPQKWLKQQYLSFCSSMQLPWKANISLDDSLVYVHRVQITPARVYFR 442
            +L+ L + K   ++  K LK        + +L      S D S   + R+ ITP R Y  
Sbjct: 370  SLKHLCTYKRPVFDAYKRLKLVQEWIQKNPKLLGSHEQSEDIS--EIRRLVITPTRAYCL 429

Query: 443  GPEANLSNRVVRRFIDDIDNFLRVSFVDEELDKIHSSDLS--------PRTSTEKIERTS 502
             PE  LSNRV+RR+    + FLRV+F+DE +  I+S+ LS          TS+   ++T 
Sbjct: 430  PPEVELSNRVLRRYKAVAERFLRVTFMDESMQTINSNVLSYFVAPIVKDLTSSSFSQKTY 489

Query: 503  VYDRILSVLRNGIVIGGKKFEFLAFSASQLRENSFWMFAPREGLNAADIREWMGDFREIR 562
            V+ R+ S+L +G  + G+K+ FLAFSA+QLR+ S W FA       +DI+ WMG F++ +
Sbjct: 490  VFKRVKSILTDGFKLCGRKYSFLAFSANQLRDRSAWFFAEDGKTRVSDIKTWMGKFKD-K 549

Query: 563  NVAKYAARLGQSFGSSRKTLCVEENEIEV-IPDVEVERKNIKYCFSDGIGKISEALAEMV 622
            NVAK AAR+G  F S+  T+ V  +E++  +PD+E       Y FSDGIG I+  LA+ V
Sbjct: 550  NVAKCAARMGLCFSSTYATVDVMPHEVDTEVPDIERNG----YVFSDGIGTITPDLADEV 609

Query: 623  AEKCGL-ISHTPSAFQIRYAGYKGVVAVDPTSKK--KLSLRKSMLKYMSLDTQLDVLSWS 682
             EK  L + ++P A+QIRYAG+KGVVA  P+     +L+LR SM K+ S  T L++ SW+
Sbjct: 610  MEKLKLDVHYSPCAYQIRYAGFKGVVARWPSKSDGIRLALRDSMKKFFSKHTILEICSWT 669

Query: 683  KYQPCFLNRQVINLLSTLGIRDDVFVNQQKKAVDQLDSILRDPSKALEVLELMSPGEMTS 742
            ++QP FLNRQ+I LLS LG+ D++F + Q+  + +L+ IL D   A EVL      +  +
Sbjct: 670  RFQPGFLNRQIITLLSVLGVPDEIFWDMQESMLYKLNRILDDTDVAFEVLTASCAEQGNT 729

Query: 743  ILKDMLLFYNPHEEPFLNMMLRTFRADKLLDLRTKSRIFVPKGRTMMGCLDETRSLEYGQ 802
                +   + P  EP L  ML + R  +L  LR KSRIFV  GR +MGCLDE   LE+GQ
Sbjct: 730  AAIMLSAGFKPKTEPHLRGMLSSVRIAQLWGLREKSRIFVTSGRWLMGCLDEAGILEHGQ 789

Query: 803  VFIHCSVP----------GRSSESNF---VVKGKVVVAKNPCLHPGDVRVLDAVDVKTLH 862
             FI  S P           R  E+     VVKG V +AKNPCLHPGDVR+L+AVDV  LH
Sbjct: 790  CFIQVSKPSIENCFSKHGSRFKETKTDLEVVKGYVAIAKNPCLHPGDVRILEAVDVPQLH 849

Query: 863  HMVDCVVFPQKGKRPHPNECSGSDLDGDLYFVCWDPELTCIRPIK----PMSYEPAPTIQ 922
            HM DC++FPQKG RPH NE SGSDLDGDLYFV WD +L  I P +     M Y+ A    
Sbjct: 850  HMYDCLIFPQKGDRPHTNEASGSDLDGDLYFVAWDQKL--IPPNRKSYPAMHYDAAEEKS 909

Query: 923  LDHDVTIEEVQEYFANYMVNDGLGGIANAHTVFADKKPKKAMSAECIELAKLFSIAVDFP 982
            L   V  +++ ++FA  + N+ LG I NAH V AD+    AM  EC+ LA+L + AVDFP
Sbjct: 910  LGRAVNHQDIIDFFARNLANEQLGTICNAHVVHADRSEYGAMDEECLLLAELAATAVDFP 969

Query: 983  KTGVPANLPRSLRVHQYPDFMEKPNKRSYISNGVIGKLFRGVKDV-SSDINNIETFTREV 1042
            KTG   ++P  L+   YPDFM K + ++Y SN ++G+L+R VK+V   D       + + 
Sbjct: 970  KTGKIVSMPFHLKPKLYPDFMGKEDYQTYKSNKILGRLYRRVKEVYDEDAEASSEESTDP 1029

Query: 1043 AAKCYDPDMEVMGFENYLSEAFDYKSMYDFKLGNLMDYYGIETEPELVSGNILRMGKSFD 1102
            +A  YD  +E+ GFE+ + EA+ +K +YD +L  L+  Y ++ E E+V+G+I  M K   
Sbjct: 1030 SAIPYDAVLEIPGFEDLIPEAWGHKCLYDGQLIGLLGQYKVQKEEEIVTGHIWSMPKYTS 1089

Query: 1103 KRND--MEQISLAMRSLRKEARGWFNEKGSKSIYNNNKDEDDEY-AKASAWYHVTYHPNF 1162
            K+     E++  +  SL+KE R  F E        + ++++  Y  KASAWYHVTYHP +
Sbjct: 1090 KKQGELKERLKHSYNSLKKEFRKVFEETIPDHENLSEEEKNILYEKKASAWYHVTYHPEW 1149

[Close]

BLAST of Cp4.1LG01g18460 vs. TrEMBL
Match: E5GB63_CUCME (RNA-dependent RNA polymerase OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 1741.5 bits (4509), Expect = 0.0e+00
Identity = 877/1174 (74.70%), Postives = 978/1174 (83.30%), Query Frame = 1


Query: 6    KTIEVFGFGREVSAGEVKEFMENHTGEGTVSKVRISEPKDEKARLTYARVEFRSKVAAEY 65
            KTIE++GFG +V+  EVKEF+ENHTG+GTVS VRIS+PKD+K R T   V F+SK+AAEY
Sbjct: 3    KTIEIYGFGPKVTVDEVKEFLENHTGDGTVSTVRISKPKDDKTRFTSVTVRFKSKLAAEY 62

Query: 66   VVEKAEAEER-LWFGRWYLKARGVER-GREREMRVERMEKVRVQLGSVVWKEEMRVIWRG 125
            +V KA  EE+ LWF   YLKAR VE+        +ERME V+ QLGS++ K++MRVIW G
Sbjct: 63   IVAKATTEEKKLWFESSYLKAREVEKKATSGGPEMERMEDVKGQLGSMISKDKMRVIWEG 122

Query: 126  ENWSVEYGNGMRKLWFYLSYGVIDYKMELRCRVLHGFSRNVHLLLRLLPLNSIPRNQLVS 185
            E W+VE+GNG+RKLWFYLSY V DYK       +     N+  +    PLN   +  L+ 
Sbjct: 123  EKWNVEFGNGVRKLWFYLSYEVDDYK-------MELCFENILSVEFRCPLNQPSKFFLIQ 182

Query: 186  AGSEMWISLHLLALDNPSLCASKFLLEISFLLSSKHWSATKKSMALSNCPQLQGAPRIFK 245
                                +S FL   SF LS         S+    C     APRIF+
Sbjct: 183  V-------------------SSFFLSFFSFFLSFL-------SLLKLQCR----APRIFR 242

Query: 246  KCPSSSSSQFYSKESTGFRWIRDVDFTPSSCIGQSFALCFEVSPGDQLPSFFQTLVGYKE 305
            K PSSSSS  YS ES  FRWIRDVDFTPSSCIGQSF LC + SP   LP FFQTLVGYK 
Sbjct: 243  KTPSSSSSPLYSNESNSFRWIRDVDFTPSSCIGQSFTLCLQFSPSHHLPPFFQTLVGYKV 302

Query: 306  IYGPFKLSTGSAFSSNSNLVPIVTPPQPFDIPYKILFKINALVQHGYLPGSALDDKFFRL 365
             Y PF L  GS+F SNSNLVPI+TPPQ FDI YKILFKINAL+Q GYL G  LDD+FFRL
Sbjct: 303  TYDPFILRKGSSFVSNSNLVPIITPPQAFDISYKILFKINALLQRGYLSGPTLDDEFFRL 362

Query: 366  VDPSRFRSDYIEYALEKLFSLKECCYEPQKWLKQQYLSFCSSMQLPWKANISLDDSLVYV 425
            VD SRF  DYIE+ALEKLF+LKECCY+PQKWLK QYLS+  S QLPWK N+SLDD LVYV
Sbjct: 363  VDSSRFHPDYIEHALEKLFNLKECCYKPQKWLKDQYLSYYVSNQLPWKPNVSLDDGLVYV 422

Query: 426  HRVQITPARVYFRGPEANLSNRVVRRFIDDIDNFLRVSFVDEELDKIHSSDLSPRTST-E 485
            HRVQITP +VYF GPEANLSNRVVRRFIDDIDNFLRVSFVDEELDK+HS DL+PR+S+ E
Sbjct: 423  HRVQITPLKVYFCGPEANLSNRVVRRFIDDIDNFLRVSFVDEELDKLHSIDLAPRSSSPE 482

Query: 486  KIERTSVYDRILSVLRNGIVIGGKKFEFLAFSASQLRENSFWMFAPREGLNAADIREWMG 545
               RT VYDR++SVL+NGIVIG KKFEFLAFSASQLRENSFWMFA R+GL+AADIREWMG
Sbjct: 483  NNTRTRVYDRVVSVLKNGIVIGDKKFEFLAFSASQLRENSFWMFASRKGLSAADIREWMG 542

Query: 546  DFREIRNVAKYAARLGQSFGSSRKTLCVEENEIEVIPDVEVERKNIKYCFSDGIGKISEA 605
            DFR+IRNVAKYAARLGQSFGSSRKTLCV+E+EIEVIPDVEVERKNI YCFSDGIGKIS+ 
Sbjct: 543  DFRQIRNVAKYAARLGQSFGSSRKTLCVKEHEIEVIPDVEVERKNIMYCFSDGIGKISKT 602

Query: 606  LAEMVAEKCGLISHTPSAFQIRYAGYKGVVAVDPTSKKKLSLRKSMLKYMSLDTQLDVLS 665
            LA+ VA+KCGL  HTPSAFQIRYAGYKGVVA+DPTS+KKLSLRKSMLKYMSLDTQLDVL 
Sbjct: 603  LAKKVAKKCGLTGHTPSAFQIRYAGYKGVVAIDPTSEKKLSLRKSMLKYMSLDTQLDVLL 662

Query: 666  WSKYQPCFLNRQVINLLSTLGIRDDVFVNQQKKAVDQLDSILRDPSKALEVLELMSPGEM 725
            WSKYQPCFLNRQVINLLSTLGI DDVFV +QK+A+DQLDSIL DPS+ALEVLELMSPGEM
Sbjct: 663  WSKYQPCFLNRQVINLLSTLGIGDDVFVKKQKEAIDQLDSILEDPSRALEVLELMSPGEM 722

Query: 726  TSILKDMLLFYNPHEEPFLNMMLRTFRADKLLDLRTKSRIFVPKGRTMMGCLDETRSLEY 785
            TSILK++L FY P+EEPFLNMML TFRA+KLLDL+TKSRIFVP+GRTMMGCLDETR+LEY
Sbjct: 723  TSILKELLSFYMPNEEPFLNMMLWTFRANKLLDLKTKSRIFVPRGRTMMGCLDETRTLEY 782

Query: 786  GQVFIHCSVPGRSSESNFVVKGKVVVAKNPCLHPGDVRVLDAVDVKTLHHMVDCVVFPQK 845
            GQVF+HCSVPGRSSE NFVVKGKVVVAKNPCLHPGDVR+LDA+DVK LHHMVDCVVFPQK
Sbjct: 783  GQVFVHCSVPGRSSEGNFVVKGKVVVAKNPCLHPGDVRLLDAIDVKALHHMVDCVVFPQK 842

Query: 846  GKRPHPNECSGSDLDGDLYFVCWDPELTCIRPIKPMSYEPAPTIQLDHDVTIEEVQEYFA 905
            GKRPHPNECSGSDLDGDLYFVCWD ELTCI+ +KPMSYEPAP+IQLDHDVTIEEVQ+YFA
Sbjct: 843  GKRPHPNECSGSDLDGDLYFVCWDSELTCIKQVKPMSYEPAPSIQLDHDVTIEEVQKYFA 902

Query: 906  NYMVNDGLGGIANAHTVFADKKPKKAMSAECIELAKLFSIAVDFPKTGVPANLPRSLRVH 965
            NYMVNDGLG IANAHTVFADK  KKAMSAECI+LAKLFSIAVDFPKTGVPANLPR+LRVH
Sbjct: 903  NYMVNDGLGAIANAHTVFADKNSKKAMSAECIKLAKLFSIAVDFPKTGVPANLPRNLRVH 962

Query: 966  QYPDFMEKPNKRSYISNGVIGKLFRGVKDVSSDINNIETFTREVAAKCYDPDMEVMGFEN 1025
            +YPDFM+KP+K +Y+SNGV+GKLFRGVKDVSSD+N  E FT+EVA KCYDPDMEV GFE 
Sbjct: 963  EYPDFMDKPDKPTYVSNGVLGKLFRGVKDVSSDVNTFEIFTKEVATKCYDPDMEVDGFEK 1022

Query: 1026 YLSEAFDYKSMYDFKLGNLMDYYGIETEPELVSGNILRMGKSFDKRNDMEQISLAMRSLR 1085
            YL EAFDYK+ YDFKLGNLMDYYGI+TEPELVSGNIL+M KSFDKRND+EQI+ AM+SLR
Sbjct: 1023 YLREAFDYKTKYDFKLGNLMDYYGIKTEPELVSGNILKMAKSFDKRNDLEQIAFAMKSLR 1082

Query: 1086 KEARGWFNEKGSKSIYNNNKDEDDEYAKASAWYHVTYHPNFWGRYNEGMQRDHFLSFPWC 1145
            KE R WFNE  SK  Y +   EDDEYA+ASAWY VTYHP++WGRYNEG QRDHFLSFPWC
Sbjct: 1083 KEVRSWFNENESKYTYED--IEDDEYARASAWYCVTYHPDYWGRYNEGTQRDHFLSFPWC 1137

Query: 1146 VSEKLIQIKREKM---ESSPVSSLIHKFGKLSFY 1174
            V++KLIQIKREKM    SSP+SSL + F  +S Y
Sbjct: 1143 VADKLIQIKREKMSLRNSSPMSSLQYNFDGMSLY 1137

[Close]

BLAST of Cp4.1LG01g18460 vs. TrEMBL
Match: A0A0S1YCZ4_CUCSA (RNA-dependent RNA polymerase 1c OS=Cucumis sativus GN=RDR1c PE=2 SV=1)

HSP 1 Score: 1604.7 bits (4154), Expect = 0.0e+00
Identity = 777/936 (83.01%), Postives = 848/936 (90.60%), Query Frame = 1


Query: 234  QLQGAPRIFKKCPSSSSSQFYSKESTGFRWIRDVDFTPSSCIGQSFALCFEVSPGDQLPS 293
            QLQGAPRIF+K PSSSSS  YS +ST FRWIRDVDFTPSSCIGQSF +C ++SP   LP 
Sbjct: 179  QLQGAPRIFRKTPSSSSSPLYSNKSTSFRWIRDVDFTPSSCIGQSFTICLQLSPSHHLPP 238

Query: 294  FFQTLVGYKEIYGPFKLSTGSAFSSNSNLVPIVTPPQPFDIPYKILFKINALVQHGYLPG 353
            FFQTLVGYK  Y PF L  GS+  SNSNLVPI+TPPQ FDI YKILFKINAL+QHGYL G
Sbjct: 239  FFQTLVGYKVTYAPFILHKGSSLVSNSNLVPIITPPQAFDISYKILFKINALLQHGYLSG 298

Query: 354  SALDDKFFRLVDPSRFRSDYIEYALEKLFSLKECCYEPQKWLKQQYLSFCSSMQLPWKAN 413
              LDD+FFRLVD SRF SDYIE+ALEKLF+LKECCY+PQKWLK QYLS+ +S QLPWK+N
Sbjct: 299  PTLDDEFFRLVDSSRFHSDYIEHALEKLFNLKECCYKPQKWLKDQYLSYYTSNQLPWKSN 358

Query: 414  ISLDDSLVYVHRVQITPARVYFRGPEANLSNRVVRRFIDDIDNFLRVSFVDEELDKIHSS 473
            ISLDD LVYVHRVQITP +VYF GPEANLSNRVVRRFI DIDNFLRVSFVDEELDK+HS 
Sbjct: 359  ISLDDGLVYVHRVQITPLKVYFCGPEANLSNRVVRRFIGDIDNFLRVSFVDEELDKLHSI 418

Query: 474  DLSPRTST-EKIERTSVYDRILSVLRNGIVIGGKKFEFLAFSASQLRENSFWMFAPREGL 533
            DL+PR+S+ E  +RT VYDR++S+L+NGIVIG KKFEFLAFSASQLRENSFWMFA REGL
Sbjct: 419  DLAPRSSSPENSQRTRVYDRVISILKNGIVIGNKKFEFLAFSASQLRENSFWMFASREGL 478

Query: 534  NAADIREWMGDFREIRNVAKYAARLGQSFGSSRKTLCVEENEIEVIPDVEVERKNIKYCF 593
            +AADIREWMGDF  IRNVAKYAARLGQSFGSSRKTLCVEE+EIEVIPDVEVERKNI YCF
Sbjct: 479  SAADIREWMGDFHHIRNVAKYAARLGQSFGSSRKTLCVEEHEIEVIPDVEVERKNIMYCF 538

Query: 594  SDGIGKISEALAEMVAEKCGLISHTPSAFQIRYAGYKGVVAVDPTSKKKLSLRKSMLKYM 653
            SDGIGKIS+ LA+ VAEKCGL SHTPSAFQIRYAGYKGVVA+DPTS+KKLSLRKSMLKYM
Sbjct: 539  SDGIGKISKTLAKKVAEKCGLTSHTPSAFQIRYAGYKGVVAIDPTSEKKLSLRKSMLKYM 598

Query: 654  SLDTQLDVLSWSKYQPCFLNRQVINLLSTLGIRDDVFVNQQKKAVDQLDSILRDPSKALE 713
            SLDTQLDVL WSKYQPCFLNRQVINLLSTLGIRDDVFV +QK+A+DQLDSIL DPS+ALE
Sbjct: 599  SLDTQLDVLLWSKYQPCFLNRQVINLLSTLGIRDDVFVKKQKEAIDQLDSILEDPSRALE 658

Query: 714  VLELMSPGEMTSILKDMLLFYNPHEEPFLNMMLRTFRADKLLDLRTKSRIFVPKGRTMMG 773
            VLELMSPGEMTSILK++L FY P++EPFLNMMLRTFRADKLLDLRTKSRIFVPKGRTMMG
Sbjct: 659  VLELMSPGEMTSILKELLSFYMPNQEPFLNMMLRTFRADKLLDLRTKSRIFVPKGRTMMG 718

Query: 774  CLDETRSLEYGQVFIHCSVPGRSSESNFVVKGKVVVAKNPCLHPGDVRVLDAVDVKTLHH 833
            CLDET++LEYGQVF+HCS+PGRSSE NFVVKGKVVVAKNPCLHPGDVR+LDA+DVK LHH
Sbjct: 719  CLDETQTLEYGQVFVHCSIPGRSSEGNFVVKGKVVVAKNPCLHPGDVRLLDAIDVKALHH 778

Query: 834  MVDCVVFPQKGKRPHPNECSGSDLDGDLYFVCWDPELTCIRPIKPMSYEPAPTIQLDHDV 893
            MVDCVVFPQKGKRPHPNECSGSDLDGDLYFVCWD ELTCI+ +KPMSY+PAPTIQLDHDV
Sbjct: 779  MVDCVVFPQKGKRPHPNECSGSDLDGDLYFVCWDTELTCIKQVKPMSYKPAPTIQLDHDV 838

Query: 894  TIEEVQEYFANYMVNDGLGGIANAHTVFADKKPKKAMSAECIELAKLFSIAVDFPKTGVP 953
            TIEEVQEYFANYMVNDGLG IANAHTVFADK  KKAMSAECI+LAKLFSIAVDFPKTGVP
Sbjct: 839  TIEEVQEYFANYMVNDGLGAIANAHTVFADKNSKKAMSAECIKLAKLFSIAVDFPKTGVP 898

Query: 954  ANLPRSLRVHQYPDFMEKPNKRSYISNGVIGKLFRGVKDVSSDINNIETFTREVAAKCYD 1013
            ANLPR+LRVH+YPDFM+KPNK +Y+SNGV+GKLFRGVKDVSSD++  E FTREVA KCYD
Sbjct: 899  ANLPRNLRVHEYPDFMDKPNKATYVSNGVLGKLFRGVKDVSSDVSAFEIFTREVATKCYD 958

Query: 1014 PDMEVMGFENYLSEAFDYKSMYDFKLGNLMDYYGIETEPELVSGNILRMGKSFDKRNDME 1073
            PDMEV GFE YL EAFDYK+ YDFKLGNLMDYYGI+TEPELVSGNIL+M KSFDKR D+E
Sbjct: 959  PDMEVDGFEKYLREAFDYKTKYDFKLGNLMDYYGIKTEPELVSGNILKMAKSFDKRKDLE 1018

Query: 1074 QISLAMRSLRKEARGWFNEKGSKSIYNNNKDEDDEYAKASAWYHVTYHPNFWGRYNEGMQ 1133
            QI+ AM+SLRKE R WFNE  SKS Y+   D  DEYA+ASAWY VTYHP++WG YNEG +
Sbjct: 1019 QIAFAMKSLRKEVRFWFNENESKSTYD---DIQDEYARASAWYCVTYHPDYWGCYNEGTK 1078

Query: 1134 RDHFLSFPWCVSEKLIQIKREKM---ESSPVSSLIH 1166
            RDHFLSFPWCV++KLIQIKREKM    SSP SSL+H
Sbjct: 1079 RDHFLSFPWCVADKLIQIKREKMSMRNSSPKSSLLH 1111

[Close]

BLAST of Cp4.1LG01g18460 vs. TrEMBL
Match: A0A0A0KRH3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G564290 PE=4 SV=1)

HSP 1 Score: 1598.6 bits (4138), Expect = 0.0e+00
Identity = 773/938 (82.41%), Postives = 847/938 (90.30%), Query Frame = 1


Query: 234  QLQGAPRIFKKCPSSSSSQFYSKESTGFRWIRDVDFTPSSCIGQSFALCFEVSPGDQLPS 293
            QLQGAPRIF+K PSSSSS  YS +ST FRWIRDVDFTPSSCIGQSF +C ++SP   LP 
Sbjct: 179  QLQGAPRIFRKTPSSSSSPLYSNKSTSFRWIRDVDFTPSSCIGQSFTICLQLSPSHHLPP 238

Query: 294  FFQTLVGYKEIYGPFKLSTGSAFSSNSNLVPIVTPPQPFDIPYKILFKINALVQHGYLPG 353
            FFQTLVGYK  Y PF L  GS+  SNSNLVPI+TPPQ FDI YKILFKINAL+QHGYL G
Sbjct: 239  FFQTLVGYKVTYAPFILHKGSSLVSNSNLVPIITPPQAFDISYKILFKINALLQHGYLSG 298

Query: 354  SALDDKFFRLVDPSRFRSDYIEYALEKLFSLKECCYEPQKWLKQQYLSFCSSMQLPWKAN 413
              LDD+FFRLVD SRF SDYI++ALEKLF+LKECCY+PQKWLK QYLS+ +S QLPWK+N
Sbjct: 299  PTLDDEFFRLVDSSRFHSDYIDHALEKLFNLKECCYKPQKWLKDQYLSYYTSNQLPWKSN 358

Query: 414  ISLDDSLVYVHRVQITPARVYFRGPEANLSNRVVRRFIDDIDNFLRVSFVDEELDKIHSS 473
            ISLDD LVYVHRVQITP +VYF GPEANLSNRVVRRFI DIDNFLRVSFVDEELDK+HS 
Sbjct: 359  ISLDDGLVYVHRVQITPLKVYFCGPEANLSNRVVRRFIGDIDNFLRVSFVDEELDKLHSI 418

Query: 474  DLSPRTST-EKIERTSVYDRILSVLRNGIVIGGKKFEFLAFSASQLRENSFWMFAPREGL 533
            DL+PR+S+ E  +RT VYDR++SVL+NGIVIG KKFEFLAFSASQLRENSFWMFA REGL
Sbjct: 419  DLAPRSSSHENSQRTRVYDRVVSVLKNGIVIGNKKFEFLAFSASQLRENSFWMFASREGL 478

Query: 534  NAADIREWMGDFREIRNVAKYAARLGQSFGSSRKTLCVEENEIEVIPDVEVERKNIKYCF 593
            +AADIREWMGDF  IRNVAKYAARLGQSFGSSRKTLCVEE+EIEVIPDVEVERKNI YCF
Sbjct: 479  SAADIREWMGDFHHIRNVAKYAARLGQSFGSSRKTLCVEEHEIEVIPDVEVERKNIMYCF 538

Query: 594  SDGIGKISEALAEMVAEKCGLISHTPSAFQIRYAGYKGVVAVDPTSKKKLSLRKSMLKYM 653
            SDGIGKIS+ LA+ VAEKCGLI+HTPSAFQIRYAGYKGVVA+DPTSKKKLSLR SMLKYM
Sbjct: 539  SDGIGKISKTLAKKVAEKCGLINHTPSAFQIRYAGYKGVVAIDPTSKKKLSLRNSMLKYM 598

Query: 654  SLDTQLDVLSWSKYQPCFLNRQVINLLSTLGIRDDVFVNQQKKAVDQLDSILRDPSKALE 713
            SLDTQLDVLSWSKYQPCFLNRQVINLLSTLGI DDVFV +QK+A+DQLDSIL DPS+ALE
Sbjct: 599  SLDTQLDVLSWSKYQPCFLNRQVINLLSTLGIGDDVFVKKQKEAIDQLDSILEDPSRALE 658

Query: 714  VLELMSPGEMTSILKDMLLFYNPHEEPFLNMMLRTFRADKLLDLRTKSRIFVPKGRTMMG 773
            VLELMSPGEMTSILK++L FY P+EEPFLNMMLRTFRA+KLLDL+TKSRIFVP+GRTM+G
Sbjct: 659  VLELMSPGEMTSILKELLSFYMPNEEPFLNMMLRTFRANKLLDLKTKSRIFVPEGRTMIG 718

Query: 774  CLDETRSLEYGQVFIHCSVPGRSSESNFVVKGKVVVAKNPCLHPGDVRVLDAVDVKTLHH 833
            CLDETR+LEYGQVF+HCSVP RSSE NFVVKGK+VVAKNPCLHPGDVRVLDAVDVK LHH
Sbjct: 719  CLDETRTLEYGQVFVHCSVPRRSSEGNFVVKGKIVVAKNPCLHPGDVRVLDAVDVKALHH 778

Query: 834  MVDCVVFPQKGKRPHPNECSGSDLDGDLYFVCWDPELTCIRPIKPMSYEPAPTIQLDHDV 893
            MVDCVVFPQKGKRPHPNECSGSDLDGDLYF CWD ELTCI+ +KPM+YEPAPTIQL+HDV
Sbjct: 779  MVDCVVFPQKGKRPHPNECSGSDLDGDLYFACWDLELTCIKQVKPMNYEPAPTIQLNHDV 838

Query: 894  TIEEVQEYFANYMVNDGLGGIANAHTVFADKKPKKAMSAECIELAKLFSIAVDFPKTGVP 953
            TIEE+QEYFANYMVNDG+G IANAHTVFADK  KKAMS ECI+LAKLFSIAVDFPKTGVP
Sbjct: 839  TIEEIQEYFANYMVNDGIGAIANAHTVFADKNSKKAMSVECIKLAKLFSIAVDFPKTGVP 898

Query: 954  ANLPRSLRVHQYPDFMEKPNKRSYISNGVIGKLFRGVKDVSSDINNIETFTREVAAKCYD 1013
            ANLPR+LRVH+YPDFM+KPNK +Y+SNGV+GKLFRGVKDVSSD+N  E FTREVA K YD
Sbjct: 899  ANLPRNLRVHEYPDFMDKPNKPTYVSNGVLGKLFRGVKDVSSDVNTFEIFTREVATKYYD 958

Query: 1014 PDMEVMGFENYLSEAFDYKSMYDFKLGNLMDYYGIETEPELVSGNILRMGKSFDKRNDME 1073
            PDMEV GFE YL EAFDYK+ YDFKLGNLMDYYGI+TEPELVSGN+L+M KSFDKRND+E
Sbjct: 959  PDMEVDGFEKYLREAFDYKTKYDFKLGNLMDYYGIKTEPELVSGNVLKMAKSFDKRNDLE 1018

Query: 1074 QISLAMRSLRKEARGWFNEKGSKSIYNNNKDEDDEYAKASAWYHVTYHPNFWGRYNEGMQ 1133
            QI+ AM+SLRKE R WFNE  SK  Y+   D +DEYAKASAWY+VTYHP++WG YNEGMQ
Sbjct: 1019 QITFAMKSLRKEVRSWFNENESKFTYD---DIEDEYAKASAWYYVTYHPDYWGCYNEGMQ 1078

Query: 1134 RDHFLSFPWCVSEKLIQIKREKM---ESSPVSSLIHKF 1168
            RDHFLSFPWCV++KLIQIKR+KM    S PVSSL H F
Sbjct: 1079 RDHFLSFPWCVADKLIQIKRDKMTLKNSYPVSSLFHNF 1113

[Close]

BLAST of Cp4.1LG01g18460 vs. TrEMBL
Match: F6HFC7_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_01s0011g05880 PE=4 SV=1)

HSP 1 Score: 1219.9 bits (3155), Expect = 0.0e+00
Identity = 613/937 (65.42%), Postives = 730/937 (77.91%), Query Frame = 1


Query: 234  QLQGAPRIFKKCPSSSSSQFYSKESTGFRWIRDVDFTPSSCIGQSFALCFEVSPGDQLPS 293
            QL GAP+I++K     S  +Y KE+   +W+R++DFTPS  IGQSFALC E+  G QLP+
Sbjct: 136  QLLGAPQIYEKDVPVLS--YYFKEAPDDQWVREIDFTPSCFIGQSFALCLELPYGSQLPN 195

Query: 294  FFQTLVGYKEIYGPFKLSTGSAFSSNSNLVPIVTPPQPFDIPYKILFKINALVQHGYLPG 353
            F +    YKE  G F L +GS++S N +LVPI+ PPQ   +P++ILFKIN LVQ+G L G
Sbjct: 196  FRENFAYYKENDGKFILESGSSYSHNLHLVPILGPPQGSSLPFQILFKINTLVQNGCLSG 255

Query: 354  SALDDKFFRLVDPSRFRSDYIEYALEKLFSLKECCYEPQKWLKQQYLSFCSSMQLPWKAN 413
              LD  FFRLVDP RF   +IE+ALEKL+ LKECCYEP +WL +QY ++     +     
Sbjct: 256  PTLDTSFFRLVDPERFPISFIEHALEKLYHLKECCYEPVRWLSEQYRTYVKK-PVAGSPA 315

Query: 414  ISLDDSLVYVHRVQITPARVYFRGPEANLSNRVVRRFIDDIDNFLRVSFVDEELDKIHSS 473
            ISLD  LVYV RVQITP +VYF GPE N+SNRV+R + +DIDNFLRVSF+DE L+KIHS+
Sbjct: 316  ISLDTGLVYVRRVQITPCKVYFCGPEVNVSNRVLRNYPEDIDNFLRVSFLDENLEKIHST 375

Query: 474  DLSPRTSTEKIERTSVYDRILSVLRNGIVIGGKKFEFLAFSASQLRENSFWMFAPREGLN 533
             +SPR S E   RT VY RILS+L+NGIVIG KKF+FLAFS+SQLR+NS WMFA R GL 
Sbjct: 376  VISPRMSKEG-RRTGVYRRILSILQNGIVIGDKKFDFLAFSSSQLRDNSAWMFASRPGLT 435

Query: 534  AADIREWMGDFREIRNVAKYAARLGQSFGSSRKTLCVEENEIEVIPDVEVERKNIKYCFS 593
            AA+IR WMGDF +IRNVAKYAARLGQSF SS++TL V ++EIE IPD+E+ +    Y FS
Sbjct: 436  AAEIRSWMGDFSQIRNVAKYAARLGQSFSSSKETLKVAKDEIENIPDIEIHKGRTTYVFS 495

Query: 594  DGIGKISEALAEMVAEKCGLISHTPSAFQIRYAGYKGVVAVDPTSKKKLSLRKSMLKYMS 653
            DGIGKIS  LA  VA KCG  S TPSAFQIRY GYKGVVAVDPTS +KLSLRKSM KY S
Sbjct: 496  DGIGKISPQLAHRVAIKCGCKSSTPSAFQIRYGGYKGVVAVDPTSSRKLSLRKSMFKYES 555

Query: 654  LDTQLDVLSWSKYQPCFLNRQVINLLSTLGIRDDVFVNQQKKAVDQLDSILRDPSKALEV 713
             +T LDVL+WSKYQP FLNRQ+I LLSTLG++D VF  +Q+ AVDQLD+IL+DP  A E 
Sbjct: 556  DNTNLDVLAWSKYQPSFLNRQLITLLSTLGVKDHVFEKKQRAAVDQLDTILKDPVAAQEA 615

Query: 714  LELMSPGEMTSILKDMLLF-YNPHEEPFLNMMLRTFRADKLLDLRTKSRIFVPKGRTMMG 773
            LELMSPGE T++LK+ML+  Y P  EPFL+MML+TFRA KLL+LRTK+RIFVP GR+MMG
Sbjct: 616  LELMSPGENTNVLKEMLMCGYKPDAEPFLSMMLQTFRAAKLLELRTKTRIFVPNGRSMMG 675

Query: 774  CLDETRSLEYGQVFIHCSVPGR--------------SSESNFVVKGKVVVAKNPCLHPGD 833
            CLDETR+LEYG+VF+  S  G               S   NF+++GK+VVAKNPCLHPGD
Sbjct: 676  CLDETRTLEYGEVFVQISGTGGRQSFGDSLMFRGSGSHHDNFILEGKIVVAKNPCLHPGD 735

Query: 834  VRVLDAVDVKTLHHMVDCVVFPQKGKRPHPNECSGSDLDGDLYFVCWDPELTCIRPIKPM 893
            VRVL AV+V TLHHMVDCVVFPQKGKRPHPNECSGSDLDGD+YFVCWD +L   + I PM
Sbjct: 736  VRVLWAVNVPTLHHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVCWDRDLIPPQQINPM 795

Query: 894  SYEPAPTIQLDHDVTIEEVQEYFANYMVNDGLGGIANAHTVFADKKPKKAMSAECIELAK 953
             Y PAPT  LDHDV IEEV+EYF NY+VND LG IANAHTVFADK+  KA    C ELAK
Sbjct: 796  DYTPAPTKVLDHDVMIEEVEEYFTNYIVNDSLGIIANAHTVFADKEYDKAYCDPCTELAK 855

Query: 954  LFSIAVDFPKTGVPANLPRSLRVHQYPDFMEKPNKRSYISNGVIGKLFRGVKDVSSDINN 1013
            LFSIAVDFPKTGVPA +PR+LRV +YPDFMEK +K +Y S  VIGKLFR VKD++    N
Sbjct: 856  LFSIAVDFPKTGVPAEIPRNLRVKEYPDFMEKADKPTYESQSVIGKLFREVKDIAPHNCN 915

Query: 1014 IETFTREVAAKCYDPDMEVMGFENYLSEAFDYKSMYDFKLGNLMDYYGIETEPELVSGNI 1073
            I +FTR+VA + YDPDMEV+GFE+Y+S+AF YKS YD+KLGNLMDYYGI+TE E++SG+I
Sbjct: 916  IRSFTRDVARQSYDPDMEVVGFEDYVSDAFYYKSEYDYKLGNLMDYYGIKTESEILSGSI 975

Query: 1074 LRMGKSFDKRNDMEQISLAMRSLRKEARGWFNEKGSKSIYNNNKDEDDEYAKASAWYHVT 1133
            +RM KSFD+R D E I LA++SLRKEAR WFN+ GS++    + + DD YAKASAWYHVT
Sbjct: 976  MRMSKSFDRRKDAEAIGLAVKSLRKEARTWFNKMGSET----DSEADDVYAKASAWYHVT 1035

Query: 1134 YHPNFWGRYNEGMQRDHFLSFPWCVSEKLIQIKREKM 1156
            YHP++WG YNEGM RDHFLSFPWCV +KLI  KR+KM
Sbjct: 1036 YHPDYWGCYNEGMDRDHFLSFPWCVYDKLIHTKRKKM 1064

[Close]

BLAST of Cp4.1LG01g18460 vs. TrEMBL
Match: B3SND7_GOSHI (RNA-dependent RNA polymerase OS=Gossypium hirsutum PE=4 SV=1)

HSP 1 Score: 1208.7 bits (3126), Expect = 0.0e+00
Identity = 612/983 (62.26%), Postives = 751/983 (76.40%), Query Frame = 1


Query: 201  SLCASKFLLEISFL------LSSKHWSATKKSMALSNCPQLQGAPRIFKKCPSSSSSQF- 260
            S C+SK+ LE+ +       L   H S T K + +    QL GAPRI++K   +S   F 
Sbjct: 137  SYCSSKYKLELFYENIWQIELRCPH-SQTSKHLLI----QLFGAPRIYEKEVPASECVFD 196

Query: 261  -----YSKESTGFRWIRDVDFTPSSCIGQSFALCFEVSPGDQLPSFFQTLVGYKEIYGPF 320
                 Y K+    +W+R  DFT S+CIGQS  L  E+    QLP+F +    YKE  G  
Sbjct: 197  DPLLNYFKDMPDDQWVRTTDFTRSNCIGQSSVLWLELPHNLQLPNFRENFAYYKENEGRL 256

Query: 321  KLSTGSAFSSNSNLVPIVTPPQPFDIPYKILFKINALVQHGYLPGSALDDKFFRLVDPSR 380
             L +GS++S N +LVPIV P +  D+P++ILFK+N LVQ+G +PG ALDD F+RLVDP R
Sbjct: 257  VLESGSSYSCNLSLVPIVCPSRVIDLPFEILFKVNLLVQNGCIPGPALDDTFYRLVDPCR 316

Query: 381  FRSDYIEYALEKLFSLKECCYEPQKWLKQQYLSFCSSMQLPWKANISLDDSLVYVHRVQI 440
                YI++ALEKL+ L+ECCYEP +WL ++Y +F  S +      ISLD+ LVYV RVQI
Sbjct: 317  MHKVYIDHALEKLYYLRECCYEPSRWLFEEYKNFSRSRKYQGSPTISLDEGLVYVRRVQI 376

Query: 441  TPARVYFRGPEANLSNRVVRRFIDDIDNFLRVSFVDEELDKIHSSDLSPRTSTEKIERTS 500
            TP+RVYF GPE N+SNRV+R+F +DIDNFLR+SFVDEEL+KIHS+++  R       RT 
Sbjct: 377  TPSRVYFCGPEINVSNRVLRQFHNDIDNFLRISFVDEELEKIHSTNVQARG-----RRTG 436

Query: 501  VYDRILSVLRNGIVIGGKKFEFLAFSASQLRENSFWMFAPREGLNAADIREWMGDFREIR 560
            +Y RILS LRNGIVIG K+FEFLAFS+SQLRENS WMFA R+GL AADIR WMG+F +IR
Sbjct: 437  IYKRILSTLRNGIVIGNKRFEFLAFSSSQLRENSAWMFASRKGLTAADIRSWMGNFSKIR 496

Query: 561  NVAKYAARLGQSFGSSRKTLCVEENEIEVIPDVEVERKNIKYCFSDGIGKISEALAEMVA 620
            NVAKYAARLGQSF SS +TL V ++EI +IPD+E+ +  IKY FSDGIGKIS   A+ VA
Sbjct: 497  NVAKYAARLGQSFSSSTETLSVSKDEINLIPDIEIMKDGIKYVFSDGIGKISAEFAKKVA 556

Query: 621  EKCGLISHTPSAFQIRYAGYKGVVAVDPTSKKKLSLRKSMLKYMSLDTQLDVLSWSKYQP 680
             KC L   TPSAFQIR  G+KGVVA+DPTS  KLSLRKSM KY S +T+LDVL+WSKYQP
Sbjct: 557  AKCRLKGCTPSAFQIRIGGFKGVVAIDPTSSWKLSLRKSMEKYESENTKLDVLAWSKYQP 616

Query: 681  CFLNRQVINLLSTLGIRDDVFVNQQKKAVDQLDSILRDPSKALEVLELMSPGEMTSILKD 740
            CFLNRQ+I LLSTLG+ D  F  +Q++ VDQL+++L DP +A E LELMSPGE T+ILK+
Sbjct: 617  CFLNRQLITLLSTLGVPDRAFEKKQREVVDQLNALLTDPLEAQEALELMSPGENTNILKE 676

Query: 741  MLLF-YNPHEEPFLNMMLRTFRADKLLDLRTKSRIFVPKGRTMMGCLDETRSLEYGQVFI 800
            MLL  Y P  EPFL+MML TFRA KLL+LRTK+RIFV KGR+MMGCLDETR+L YGQVF+
Sbjct: 677  MLLCGYKPDAEPFLSMMLETFRASKLLELRTKARIFVQKGRSMMGCLDETRTLNYGQVFV 736

Query: 801  HCSVPGRSSESNFVVKGKVVVAKNPCLHPGDVRVLDAVDVKTLHHMVDCVVFPQKGKRPH 860
              S  G  SE  F+V+GKV+VAKNPCLHPGDVRVL AV+V  LHHMVDCVVFPQKG RPH
Sbjct: 737  QFS--GSRSERRFIVQGKVIVAKNPCLHPGDVRVLRAVNVPDLHHMVDCVVFPQKGTRPH 796

Query: 861  PNECSGSDLDGDLYFVCWDPELTCIRPIKPMSYEPAPTIQLDHDVTIEEVQEYFANYMVN 920
            PNECSGSDLDGD+YFVCWDPEL   + I PM Y PA T +LDH+VTIEE++EYF NY+VN
Sbjct: 797  PNECSGSDLDGDVYFVCWDPELIPYKQIDPMDYSPASTTKLDHEVTIEEIEEYFTNYIVN 856

Query: 921  DGLGGIANAHTVFADKKPKKAMSAECIELAKLFSIAVDFPKTGVPANLPRSLRVHQYPDF 980
            D LG I+NAHT FAD++P KAMS  C+ELAKLFSIAVDFPKTGVPA +P+ LRV +YPDF
Sbjct: 857  DSLGIISNAHTAFADREPDKAMSRPCLELAKLFSIAVDFPKTGVPAEIPQELRVKEYPDF 916

Query: 981  MEKPNKRSYISNGVIGKLFRGVKDVSSDINNIETFTREVAAKCYDPDMEVMGFENYLSEA 1040
            MEKP+K SY S+ VIGKLFR VK+++ +  +I+  TRE   + YDPDMEV GFE+Y+ +A
Sbjct: 917  MEKPDKPSYQSHNVIGKLFREVKNLAPNECSIKFLTREKMQRFYDPDMEVEGFEDYIDDA 976

Query: 1041 FDYKSMYDFKLGNLMDYYGIETEPELVSGNILRMGKSFDKRNDMEQISLAMRSLRKEARG 1100
            F +KS YD+KLGNLMDYYG++TE E++ G I++M +SF K+ D E IS+A+RSLRKEAR 
Sbjct: 977  FFHKSKYDYKLGNLMDYYGVKTEAEILGGGIMKMSRSFTKKRDAEAISMAVRSLRKEARS 1036

Query: 1101 WFNEKGSKSIYNNNKDEDDEYAKASAWYHVTYHPNFWGRYNEGMQRDHFLSFPWCVSEKL 1160
            WFNEKGS+     +++ DD YAKASAWY+VTYHP++WG+YNEGM RDHFLSFPWCV +KL
Sbjct: 1037 WFNEKGSEL----DEEIDDAYAKASAWYYVTYHPSYWGQYNEGMNRDHFLSFPWCVYDKL 1096

Query: 1161 IQIKREK---MESSPVSSLIHKF 1168
            IQIK+EK    E+  +SSL H+F
Sbjct: 1097 IQIKKEKAAVREALDLSSLEHRF 1103

[Close]

BLAST of Cp4.1LG01g18460 vs. TAIR10
Match: AT1G14790.1 (AT1G14790.1 RNA-dependent RNA polymerase 1)

HSP 1 Score: 1122.8 bits (2903), Expect = 0.0e+00
Identity = 569/929 (61.25%), Postives = 697/929 (75.03%), Query Frame = 1


Query: 234  QLQGAPRIFKKCPSSSSSQF----YSKESTGFRWIRDVDFTPSSCIGQSFALCFEVSPGD 293
            Q+ GAP+IF+K     +  F    +  + +  +WIR  DFT SSCIGQS A C E+    
Sbjct: 172  QVIGAPKIFEKEDQPINLLFGIMDFYSDGSDEQWIRTTDFTSSSCIGQSTAFCLELPVHL 231

Query: 294  QLPSFFQTLVGYKEIYGP-FKLSTGSAFSSNSN-LVPIVTPPQPFDIPYKILFKINALVQ 353
             +P F +    Y E     F + +GS++SSN+N LVP+V PP  F +P++ILFK+N LVQ
Sbjct: 232  NVPDFRENFANYAEHRASSFLIESGSSYSSNANTLVPVVDPPPGFSLPFEILFKLNTLVQ 291

Query: 354  HGYLPGSALDDKFFRLVDPSRFRSDYIEYALEKLFSLKECCYEPQKWLKQQYLSFCSSMQ 413
            +  L G ALD  F+RL++  ++    I++ LEKLF L ECCYEP  WL+ +Y  + S  +
Sbjct: 292  NACLSGPALDLDFYRLLNQKKYDRALIDHCLEKLFHLGECCYEPAHWLRDEYKKWISKGK 351

Query: 414  LPWKANISLDDSLVYVHRVQITPARVYFRGPEANLSNRVVRRFIDDIDNFLRVSFVDEEL 473
            LP    ISLDD LVY++RVQ+TPARVYF GPE N+SNRV+R +   I+NFLRVSFVDE+L
Sbjct: 352  LPLSPTISLDDGLVYMYRVQVTPARVYFSGPEVNVSNRVLRHYSKYINNFLRVSFVDEDL 411

Query: 474  DKIHSSDLSPRTSTEKIERTSVYDRILSVLRNGIVIGGKKFEFLAFSASQLRENSFWMFA 533
            +K+ S DLSPR+ST++  RT +YDRI SVLR+GIVIG KKFEFLAFS+SQLRENS WMFA
Sbjct: 412  EKVRSMDLSPRSSTQR--RTKLYDRIYSVLRDGIVIGDKKFEFLAFSSSQLRENSAWMFA 471

Query: 534  PREGLNAADIREWMGDFREIRNVAKYAARLGQSFGSSRKTLCVEENEIEVIPDVEVERKN 593
            P + + AA IR WMGDF  IRNVAKYAARLGQSF SSR+TL V  +EIEVIPDVE+    
Sbjct: 472  PIDRITAAHIRAWMGDFDHIRNVAKYAARLGQSFSSSRETLNVRSDEIEVIPDVEIISLG 531

Query: 594  IKYCFSDGIGKISEALAEMVAEKCGLISHTPSAFQIRYAGYKGVVAVDPTSKKKLSLRKS 653
             +Y FSDGIGKIS   A  VA KCGL   +PSAFQIRY GYKGVVAVDP S KKLSLRKS
Sbjct: 532  TRYVFSDGIGKISAEFARKVARKCGLTEFSPSAFQIRYGGYKGVVAVDPNSSKKLSLRKS 591

Query: 654  MLKYMSLDTQLDVLSWSKYQPCFLNRQVINLLSTLGIRDDVFVNQQKKAVDQLDSILRDP 713
            M K+ S +T+LDVL+WSKYQPC++NRQ+I LLSTLG+ D VF  +Q++ VD+LD+IL  P
Sbjct: 592  MSKFESENTKLDVLAWSKYQPCYMNRQLITLLSTLGVTDSVFEKKQREVVDRLDAILTHP 651

Query: 714  SKALEVLELMSPGEMTSILKDMLLF-YNPHEEPFLNMMLRTFRADKLLDLRTKSRIFVPK 773
             +A E L LM+PGE T+ILK ++L  Y P  EPFL+MML+ FRA KLL+LRTK+RIF+  
Sbjct: 652  LEAHEALGLMAPGENTNILKALILCGYKPDAEPFLSMMLQNFRASKLLELRTKTRIFISG 711

Query: 774  GRTMMGCLDETRSLEYGQVFIHCSVPGRSSESNFVVKGKVVVAKNPCLHPGDVRVLDAVD 833
            GR+MMGCLDETR+LEYGQV +  S P R     F++ G VVVAKNPCLHPGDVRVL AV+
Sbjct: 712  GRSMMGCLDETRTLEYGQVVVQYSDPMRPGR-RFIITGPVVVAKNPCLHPGDVRVLQAVN 771

Query: 834  VKTLHHMVDCVVFPQKGKRPHPNECSGSDLDGDLYFVCWDPELTCIRPIKPMSYEPAPTI 893
            V  L+HMVDCVVFPQKG RPHPNECSGSDLDGD+YFVCWD EL   R  +PM Y P PT 
Sbjct: 772  VPALNHMVDCVVFPQKGLRPHPNECSGSDLDGDIYFVCWDQELVPPRTSEPMDYTPEPTQ 831

Query: 894  QLDHDVTIEEVQEYFANYMVNDGLGGIANAHTVFADKKPKKAMSAECIELAKLFSIAVDF 953
             LDHDVTIEEV+EYFANY+VND LG IANAHT FADK+P KA S  CIELAK FS AVDF
Sbjct: 832  ILDHDVTIEEVEEYFANYIVNDSLGIIANAHTAFADKEPLKAFSDPCIELAKKFSTAVDF 891

Query: 954  PKTGVPANLPRSLRVHQYPDFMEKPNKRSYISNGVIGKLFRGVKDVSSDINNIETFTREV 1013
            PKTGV A +P+ L V +YPDFMEKP+K +Y S  VIGKLFR VK+ +  + +I++FT +V
Sbjct: 892  PKTGVAAVIPQHLYVKEYPDFMEKPDKPTYESKNVIGKLFREVKERAPPLISIKSFTLDV 951

Query: 1014 AAKCYDPDMEVMGFENYLSEAFDYKSMYDFKLGNLMDYYGIETEPELVSGNILRMGKSFD 1073
            A+K YD DMEV GFE Y+ EAF  K+ YDFKLGNLMDYYGI+TE E++SG I+RM KSF 
Sbjct: 952  ASKSYDKDMEVDGFEEYVDEAFYQKANYDFKLGNLMDYYGIKTEAEILSGGIMRMSKSFT 1011

Query: 1074 KRNDMEQISLAMRSLRKEARGWFNEKGSKSIYNNNKDEDDEYAKASAWYHVTYHPNFWGR 1133
            KR D E I  A+R+LRKE         + S++N +++E++E AKASAWYHVTYH ++WG 
Sbjct: 1012 KRRDAESIGRAVRALRKE---------TLSLFNASEEEENESAKASAWYHVTYHSSYWGL 1071

Query: 1134 YNEGMQRDHFLSFPWCVSEKLIQIKREKM 1156
            YNEG+ RDHFLSF WCV +KL++IK+  +
Sbjct: 1072 YNEGLNRDHFLSFAWCVYDKLVRIKKTNL 1088

[Close]

BLAST of Cp4.1LG01g18460 vs. TAIR10
Match: AT4G11130.1 (AT4G11130.1 RNA-dependent RNA polymerase 2)

HSP 1 Score: 721.8 bits (1862), Expect = 6.6e-208
Identity = 407/964 (42.22%), Postives = 577/964 (59.85%), Query Frame = 1


Query: 234  QLQGAPRIFKKCPSSSSSQFYS------KESTGFRWIRDVDFTPSSCIGQSFALCFEVSP 293
            +L+  P++FK+     +++F S      KE   F WIR  DF+ S  IG S   C EV  
Sbjct: 184  KLKYGPKVFKRVTVHIATKFKSDRYRFCKEDFDFMWIRTTDFSGSKSIGTSTCFCLEVHN 243

Query: 294  GDQLPSFFQTLVGYKEIYGPFKLSTGSAFSSNSNLVPIVTPP-QPFDIPYKILFKINALV 353
            G  +   F  L  Y+E         G  F+S + +VP++       + PY+ILF++NALV
Sbjct: 244  GSTMLDIFSGLPYYREDTLSLTYVDGKTFASAAQIVPLLNAAILGLEFPYEILFQLNALV 303

Query: 354  QHGYLPGSALDD-KFFRLVDPSRFRSDYIEYALEKLFSLKECCYEPQKWLKQQYLSFCSS 413
                +   A  D +  +++      +  +   L+KL      CY+P  ++K Q  S    
Sbjct: 304  HAQKISLFAASDMELIKILRGMSLETALV--ILKKLHQQSSICYDPVFFVKTQMQSVVKK 363

Query: 414  MQ-LPWKANISL-DDSLVYVHRVQITPARVYFRGPEANLSNRVVRRFIDDIDNFLRVSFV 473
            M+  P  A   L + +++   R  +TP+++Y  GPE   +N VV+ F + + +F+RV+FV
Sbjct: 364  MKHSPASAYKRLTEQNIMSCQRAYVTPSKIYLLGPELETANYVVKNFAEHVSDFMRVTFV 423

Query: 474  DEELDKIHSSDLSPRTSTE---KIERTSVYDRILSVLRNGIVIGGKKFEFLAFSASQLRE 533
            +E+  K+ ++ LS  +      K  RT++Y+R+LS+L  GI +G K+FEFLAFSASQLR 
Sbjct: 424  EEDWSKLPANALSVNSKEGYFVKPSRTNIYNRVLSILGEGITVGPKRFEFLAFSASQLRG 483

Query: 534  NSFWMFAPREGLNAADIREWMGDFREIRNVAKYAARLGQSFGSSRKTLCVEENEIEVIPD 593
            NS WMFA  E + A DIREWMG FR+IR+++K AAR+GQ F +SR+TL V   ++E IPD
Sbjct: 484  NSVWMFASNEKVKAEDIREWMGCFRKIRSISKCAARMGQLFSASRQTLIVRAQDVEQIPD 543

Query: 594  VEVERKNIKYCFSDGIGKISEALAEMVAEKCGLISHTPSAFQIRYAGYKGVVAVDPTSKK 653
            +EV      YCFSDGIGKIS A A+ VA+KCGL SH PSAFQIRY GYKGV+AVD +S +
Sbjct: 544  IEVTTDGADYCFSDGIGKISLAFAKQVAQKCGL-SHVPSAFQIRYGGYKGVIAVDRSSFR 603

Query: 654  KLSLRKSMLKYMSLDTQLDVLSWSKYQPCFLNRQVINLLSTLGIRDDVFVNQQKKAVDQL 713
            KLSLR SMLK+ S +  L+V  W++  PCFLNR++I LLSTLGI D +F   Q   +  L
Sbjct: 604  KLSLRDSMLKFDSNNRMLNVTRWTESMPCFLNREIICLLSTLGIEDAMFEAMQAVHLSML 663

Query: 714  DSILRDPSKALEVLELMSPGEMTSILKDMLLF-YNPHEEPFLNMMLRTFRADKLLDLRTK 773
             ++L D   AL VL+ +S     ++L  MLL  Y P  EP+L+MMLR     +L +L+++
Sbjct: 664  GNMLEDRDAALNVLQKLSGENSKNLLVKMLLQGYAPSSEPYLSMMLRVHHESQLSELKSR 723

Query: 774  SRIFVPKGRTMMGCLDETRSLEYGQVFIHCSVPG------------RSSESNFVVKGKVV 833
             RI VPKGR ++GC+DE   LEYGQV++  ++              +  E   VV GKVV
Sbjct: 724  CRILVPKGRILIGCMDEMGILEYGQVYVRVTLTKAELKSRDQSYFRKIDEETSVVIGKVV 783

Query: 834  VAKNPCLHPGDVRVLDAVDVKTLHHM--VDCVVFPQKGKRPHPNECSGSDLDGDLYFVCW 893
            V KNPCLHPGD+RVLDA+          +DC++FPQKG+RPHPNECSG DLDGD +FV W
Sbjct: 784  VTKNPCLHPGDIRVLDAIYEVHFEEKGYLDCIIFPQKGERPHPNECSGGDLDGDQFFVSW 843

Query: 894  DPELTCIRPIKPMSYEPAPTIQLDHDVTIEEVQEYFANYMVNDGLGGIANAHTVFADKKP 953
            D ++       PM Y  +    +DHDVT+EE+ ++F +YM++D LG I+ AH V AD+ P
Sbjct: 844  DEKIIPSEMDPPMDYAGSRPRLMDHDVTLEEIHKFFVDYMISDTLGVISTAHLVHADRDP 903

Query: 954  KKAMSAECIELAKLFSIAVDFPKTGVPANLPRSLRVHQYPDFMEKPNKRSYISNGVIGKL 1013
            +KA S +C+ELA L S AVDF KTG PA +P +L+  ++PDF+E+  K +YIS  V GKL
Sbjct: 904  EKARSQKCLELANLHSRAVDFAKTGAPAEMPYALKPREFPDFLERFEKPTYISESVFGKL 963

Query: 1014 FRGVKDVSSDINNIETFTREVAAKCYDPDMEVMGFENYLSEAFDYKSMYDFKLGNLMDYY 1073
            +R VK   S +   +          YD  +E  GFE+++  A  ++ MY  KL +LM YY
Sbjct: 964  YRAVK---SSLAQRKPEAESEDTVAYDVTLEEAGFESFIETAKAHRDMYGEKLTSLMIYY 1023

Query: 1074 GIETEPELVSGNILRMGKSFDKRND------MEQISLAMRSLRKEARGWFNEKGSKSIYN 1133
            G   E E+++G IL+  + +  R++       ++I+L+++ L KEA GWF +        
Sbjct: 1024 GAANEEEILTG-ILKTKEMYLARDNRRYGDMKDRITLSVKDLHKEAMGWFEK-------- 1083

Query: 1134 NNKDEDDEYAKASAWYHVTYHPNFWGRYNEGMQRDH---FLSFPWCVSEKLIQIKREKME 1161
            + +DE  +   ASAWY+VTY+PN          RD    FLSFPW V + L+ IK E  +
Sbjct: 1084 SCEDEQQKKKLASAWYYVTYNPN---------HRDEKLTFLSFPWIVGDVLLDIKAENAQ 1123

[Close]

BLAST of Cp4.1LG01g18460 vs. TAIR10
Match: AT3G49500.1 (AT3G49500.1 RNA-dependent RNA polymerase 6)

HSP 1 Score: 564.7 bits (1454), Expect = 1.3e-160
Identity = 363/944 (38.45%), Postives = 521/944 (55.19%), Query Frame = 1


Query: 263  WIRDVDFTPSSCIGQSFALCFEVSPGDQ------LPSFFQTLVGYKEIYGPFKLSTGSAF 322
            WIR  DFT    IG+  +    +SP  +      L  F    V  + +  P ++     F
Sbjct: 250  WIRTTDFTQVGAIGRCHSYRVLISPRYENKLRTALDYFRMRRVQEERVRWPPRIRNEPCF 309

Query: 323  SSNSNLVPIVTPPQPFDIPYKILFKINALVQHGYLPGSALDDKFFRLVDPSRFRSDYIEY 382
                +            I ++I+F +N+++  G      L ++FF L+       D    
Sbjct: 310  GEPVS-DHFFCIHHKEGISFEIMFLVNSVLHRGVFNQFQLTERFFDLLRNQP--KDVNIA 369

Query: 383  ALEKLFSLKECCYEPQKWLKQQYLSFCSSMQLPWKANISLDDSLVYVHRVQITPARVYFR 442
            +L+ L + K   ++  K LK        + +L      S D S   + R+ ITP R Y  
Sbjct: 370  SLKHLCTYKRPVFDAYKRLKLVQEWIQKNPKLLGSHEQSEDIS--EIRRLVITPTRAYCL 429

Query: 443  GPEANLSNRVVRRFIDDIDNFLRVSFVDEELDKIHSSDLS--------PRTSTEKIERTS 502
             PE  LSNRV+RR+    + FLRV+F+DE +  I+S+ LS          TS+   ++T 
Sbjct: 430  PPEVELSNRVLRRYKAVAERFLRVTFMDESMQTINSNVLSYFVAPIVKDLTSSSFSQKTY 489

Query: 503  VYDRILSVLRNGIVIGGKKFEFLAFSASQLRENSFWMFAPREGLNAADIREWMGDFREIR 562
            V+ R+ S+L +G  + G+K+ FLAFSA+QLR+ S W FA       +DI+ WMG F++ +
Sbjct: 490  VFKRVKSILTDGFKLCGRKYSFLAFSANQLRDRSAWFFAEDGKTRVSDIKTWMGKFKD-K 549

Query: 563  NVAKYAARLGQSFGSSRKTLCVEENEIEV-IPDVEVERKNIKYCFSDGIGKISEALAEMV 622
            NVAK AAR+G  F S+  T+ V  +E++  +PD+E       Y FSDGIG I+  LA+ V
Sbjct: 550  NVAKCAARMGLCFSSTYATVDVMPHEVDTEVPDIERNG----YVFSDGIGTITPDLADEV 609

Query: 623  AEKCGL-ISHTPSAFQIRYAGYKGVVAVDPTSKK--KLSLRKSMLKYMSLDTQLDVLSWS 682
             EK  L + ++P A+QIRYAG+KGVVA  P+     +L+LR SM K+ S  T L++ SW+
Sbjct: 610  MEKLKLDVHYSPCAYQIRYAGFKGVVARWPSKSDGIRLALRDSMKKFFSKHTILEICSWT 669

Query: 683  KYQPCFLNRQVINLLSTLGIRDDVFVNQQKKAVDQLDSILRDPSKALEVLELMSPGEMTS 742
            ++QP FLNRQ+I LLS LG+ D++F + Q+  + +L+ IL D   A EVL      +  +
Sbjct: 670  RFQPGFLNRQIITLLSVLGVPDEIFWDMQESMLYKLNRILDDTDVAFEVLTASCAEQGNT 729

Query: 743  ILKDMLLFYNPHEEPFLNMMLRTFRADKLLDLRTKSRIFVPKGRTMMGCLDETRSLEYGQ 802
                +   + P  EP L  ML + R  +L  LR KSRIFV  GR +MGCLDE   LE+GQ
Sbjct: 730  AAIMLSAGFKPKTEPHLRGMLSSVRIAQLWGLREKSRIFVTSGRWLMGCLDEAGILEHGQ 789

Query: 803  VFIHCSVP----------GRSSESNF---VVKGKVVVAKNPCLHPGDVRVLDAVDVKTLH 862
             FI  S P           R  E+     VVKG V +AKNPCLHPGDVR+L+AVDV  LH
Sbjct: 790  CFIQVSKPSIENCFSKHGSRFKETKTDLEVVKGYVAIAKNPCLHPGDVRILEAVDVPQLH 849

Query: 863  HMVDCVVFPQKGKRPHPNECSGSDLDGDLYFVCWDPELTCIRPIK----PMSYEPAPTIQ 922
            HM DC++FPQKG RPH NE SGSDLDGDLYFV WD +L  I P +     M Y+ A    
Sbjct: 850  HMYDCLIFPQKGDRPHTNEASGSDLDGDLYFVAWDQKL--IPPNRKSYPAMHYDAAEEKS 909

Query: 923  LDHDVTIEEVQEYFANYMVNDGLGGIANAHTVFADKKPKKAMSAECIELAKLFSIAVDFP 982
            L   V  +++ ++FA  + N+ LG I NAH V AD+    AM  EC+ LA+L + AVDFP
Sbjct: 910  LGRAVNHQDIIDFFARNLANEQLGTICNAHVVHADRSEYGAMDEECLLLAELAATAVDFP 969

Query: 983  KTGVPANLPRSLRVHQYPDFMEKPNKRSYISNGVIGKLFRGVKDV-SSDINNIETFTREV 1042
            KTG   ++P  L+   YPDFM K + ++Y SN ++G+L+R VK+V   D       + + 
Sbjct: 970  KTGKIVSMPFHLKPKLYPDFMGKEDYQTYKSNKILGRLYRRVKEVYDEDAEASSEESTDP 1029

Query: 1043 AAKCYDPDMEVMGFENYLSEAFDYKSMYDFKLGNLMDYYGIETEPELVSGNILRMGKSFD 1102
            +A  YD  +E+ GFE+ + EA+ +K +YD +L  L+  Y ++ E E+V+G+I  M K   
Sbjct: 1030 SAIPYDAVLEIPGFEDLIPEAWGHKCLYDGQLIGLLGQYKVQKEEEIVTGHIWSMPKYTS 1089

Query: 1103 KRND--MEQISLAMRSLRKEARGWFNEKGSKSIYNNNKDEDDEY-AKASAWYHVTYHPNF 1162
            K+     E++  +  SL+KE R  F E        + ++++  Y  KASAWYHVTYHP +
Sbjct: 1090 KKQGELKERLKHSYNSLKKEFRKVFEETIPDHENLSEEEKNILYEKKASAWYHVTYHPEW 1149

[Close]

BLAST of Cp4.1LG01g18460 vs. TAIR10
Match: AT2G19930.1 (AT2G19930.1 RNA-dependent RNA polymerase family protein)

HSP 1 Score: 128.6 bits (322), Expect = 2.5e-29
Identity = 151/548 (27.55%), Postives = 245/548 (44.71%), Query Frame = 1


Query: 550  VAKYAARLGQSFGSSRKTLCVEENEI--EVIPDV--------EVERKNIKYCF-SDGIGK 609
            +A Y AR      S  KTL V+   I  + I D+        +V  KN K C  SDG G 
Sbjct: 346  LANYMARFSLIL-SKTKTLEVDMTGITFDQIDDIHCHDQDGKDVLDKNKKPCIHSDGTGY 405

Query: 610  ISEALAEM---------------VAEKCGLISHTPSAFQIRYAGY--KGVVAVDPT-SKK 669
            ISE LA M               + E C         F++ Y GY  KG   ++     +
Sbjct: 406  ISEDLARMCPLNIFKGKCLRSESIQEACYQDPPLLIQFRMFYDGYAVKGTFLLNKKLCPR 465

Query: 670  KLSLRKSMLKY--------MSLDTQLDVLSWSKY-QPCFLNRQVINLLSTLGIRDDVFVN 729
             + +R SM+K          S    L+V++ S   +   L++ ++ LLS  GI ++ F++
Sbjct: 466  TVQVRPSMIKVSKDPSLSNFSTFNALEVVTTSNPPKRTKLSKNLVALLSYGGIPNEFFLD 525

Query: 730  QQKKAVDQLDSILRDPSKALEVLELMSPGEMTSI-LKDMLLFYNPHEEPFLNMMLRTFRA 789
                 +++  SI  +   AL     ++ GEM       M+L   P +EP L   L     
Sbjct: 526  ILLNTLEESKSIFYNKRAALNAA--LNYGEMDDQNAAQMILVGIPLDEPHLKNYLSILLK 585

Query: 790  DKLLDLRTKSRIFVPKGRTMMGCLDETRSLEYGQVFIHCSVPGRSSESNFVVKGKVVVAK 849
             +  DL+   ++ V +   +MG +D T +L+  +V +           +  + G+V+V +
Sbjct: 586  TEKNDLKA-GKLPVTESYYLMGTVDPTGALKEDEVCVILE--------SGQISGEVLVYR 645

Query: 850  NPCLHPGDVRVLDAVDVKTLHHMVD----CVVFPQKGKRPHPNECSGSDLDGDLYFVCWD 909
            NP LH GD+ +L A  VK L   V      V FPQKG R   +E +G D DGD+YF+  +
Sbjct: 646  NPGLHFGDIHILKATYVKALEEYVGNSKFAVFFPQKGPRSLGDEIAGGDFDGDMYFISRN 705

Query: 910  PE-LTCIRPIKP-MSYEP--------APTIQLDHDVTIEEVQEYF--ANYMVNDGLGGIA 969
            PE L   +P +P +S  P        AP+ QL  +   EE+ E F  A +  ++ +G  A
Sbjct: 706  PELLENFKPSEPWVSLTPPSKSNSGRAPS-QLSPEELEEELFEMFLTAGFHASNVIGIAA 765

Query: 970  NAHTVFADK---------KPKKAMSAECIELAKLFSIAVDFPKTGVPANLPRSLRVHQYP 1027
            ++     D+         + K  M  + +EL  ++  A+D PK G    LP  L+   +P
Sbjct: 766  DSWLTIMDRFLILGDDRAEEKAEMKKKMLELIDIYYDALDAPKKGDKVYLPNKLKPDIFP 825

[Close]

BLAST of Cp4.1LG01g18460 vs. TAIR10
Match: AT2G19910.1 (AT2G19910.1 RNA-dependent RNA polymerase family protein)

HSP 1 Score: 127.5 bits (319), Expect = 5.5e-29
Identity = 122/449 (27.17%), Postives = 200/449 (44.54%), Query Frame = 1


Query: 621  FQIRYAGYKGVVAVDPTSKK----KLSLRKSMLKY--------MSLDTQLDVLSWSKY-Q 680
            F+I Y GY  V     T+KK     + +R SM+K         +S    L+V++ S   +
Sbjct: 455  FRIFYNGY-AVKGTFLTNKKLPPRTVQVRPSMIKVYEDRTLSNLSTFNSLEVVTTSNPPR 514

Query: 681  PCFLNRQVINLLSTLGIRDDVFVNQQKKAVDQLDSILRDPSKALEVLELMSPGEMTSILK 740
               L+R ++ LLS  G+ +D F+N  +  +++  +I      A +        + T+   
Sbjct: 515  KARLSRNLVALLSYGGVPNDFFLNILRNTLEESKTIFYSERAAFKAAINYGDDQYTA--- 574

Query: 741  DMLLFYNPHEEPFLNMMLRTFRADKLLDLRTKSRIFVPKGRTMMGCLDETRSLEYGQVFI 800
            DM+L   P +EP+L   L      +   L+   R  + +   +MG +D T  L+  ++  
Sbjct: 575  DMILVGIPLDEPYLKDRLSYLLKTERNALKA-GRFPIDESYYIMGTVDPTGELKENEI-- 634

Query: 801  HCSVPGRSSESNFVVKGKVVVAKNPCLHPGDVRVLDAVDVKTLHHMVD----CVVFPQKG 860
             C +          + G V+V +NP LH GD+ VL A  VK L   V      V FPQKG
Sbjct: 635  -CVILHSGQ-----ISGDVLVYRNPGLHFGDIHVLKATYVKALEDYVGNAKFAVFFPQKG 694

Query: 861  KRPHPNECSGSDLDGDLYFVCWDPE-LTCIRPIKPMSYEPAPT--------IQLDHDVTI 920
             R   +E +G D DGD+YF+  +P+ L   +P +P      P+         +L  +   
Sbjct: 695  PRSLGDEIAGGDFDGDMYFISRNPKLLEHFKPSEPWVSSSKPSKIYCGRKPSELSEEELE 754

Query: 921  EEVQEYF--ANYMVNDGLG-------GIANAHTVFADK--KPKKAMSAECIELAKLFSIA 980
            EE+ + F  A +   D +G       GI +      D+  K K       ++L  ++  A
Sbjct: 755  EELFKMFLKARFCKRDVIGMAADCWLGIMDPFLTLGDESAKEKYERKKNILKLIDIYYDA 814

Query: 981  VDFPKTGVPANLPRSLRVHQYPDFMEKPNKRSYISNGVIGKLFRGV------KDVSSDIN 1027
            +D PK G   +LP  L +  +P +ME+  KR + S  ++G +F  V      +   S+I+
Sbjct: 815  LDAPKKGAKVDLPPDLEIKNFPHYMERDPKRDFRSTSILGLIFDTVDSHNAEEPPPSEIS 874

[Close]

BLAST of Cp4.1LG01g18460 vs. NCBI nr
Match: gi|307135834|gb|ADN33705.1| (RNA-dependent RNA polymerase [Cucumis melo subsp. melo])

HSP 1 Score: 1741.5 bits (4509), Expect = 0.0e+00
Identity = 877/1174 (74.70%), Postives = 978/1174 (83.30%), Query Frame = 1


Query: 6    KTIEVFGFGREVSAGEVKEFMENHTGEGTVSKVRISEPKDEKARLTYARVEFRSKVAAEY 65
            KTIE++GFG +V+  EVKEF+ENHTG+GTVS VRIS+PKD+K R T   V F+SK+AAEY
Sbjct: 3    KTIEIYGFGPKVTVDEVKEFLENHTGDGTVSTVRISKPKDDKTRFTSVTVRFKSKLAAEY 62

Query: 66   VVEKAEAEER-LWFGRWYLKARGVER-GREREMRVERMEKVRVQLGSVVWKEEMRVIWRG 125
            +V KA  EE+ LWF   YLKAR VE+        +ERME V+ QLGS++ K++MRVIW G
Sbjct: 63   IVAKATTEEKKLWFESSYLKAREVEKKATSGGPEMERMEDVKGQLGSMISKDKMRVIWEG 122

Query: 126  ENWSVEYGNGMRKLWFYLSYGVIDYKMELRCRVLHGFSRNVHLLLRLLPLNSIPRNQLVS 185
            E W+VE+GNG+RKLWFYLSY V DYK       +     N+  +    PLN   +  L+ 
Sbjct: 123  EKWNVEFGNGVRKLWFYLSYEVDDYK-------MELCFENILSVEFRCPLNQPSKFFLIQ 182

Query: 186  AGSEMWISLHLLALDNPSLCASKFLLEISFLLSSKHWSATKKSMALSNCPQLQGAPRIFK 245
                                +S FL   SF LS         S+    C     APRIF+
Sbjct: 183  V-------------------SSFFLSFFSFFLSFL-------SLLKLQCR----APRIFR 242

Query: 246  KCPSSSSSQFYSKESTGFRWIRDVDFTPSSCIGQSFALCFEVSPGDQLPSFFQTLVGYKE 305
            K PSSSSS  YS ES  FRWIRDVDFTPSSCIGQSF LC + SP   LP FFQTLVGYK 
Sbjct: 243  KTPSSSSSPLYSNESNSFRWIRDVDFTPSSCIGQSFTLCLQFSPSHHLPPFFQTLVGYKV 302

Query: 306  IYGPFKLSTGSAFSSNSNLVPIVTPPQPFDIPYKILFKINALVQHGYLPGSALDDKFFRL 365
             Y PF L  GS+F SNSNLVPI+TPPQ FDI YKILFKINAL+Q GYL G  LDD+FFRL
Sbjct: 303  TYDPFILRKGSSFVSNSNLVPIITPPQAFDISYKILFKINALLQRGYLSGPTLDDEFFRL 362

Query: 366  VDPSRFRSDYIEYALEKLFSLKECCYEPQKWLKQQYLSFCSSMQLPWKANISLDDSLVYV 425
            VD SRF  DYIE+ALEKLF+LKECCY+PQKWLK QYLS+  S QLPWK N+SLDD LVYV
Sbjct: 363  VDSSRFHPDYIEHALEKLFNLKECCYKPQKWLKDQYLSYYVSNQLPWKPNVSLDDGLVYV 422

Query: 426  HRVQITPARVYFRGPEANLSNRVVRRFIDDIDNFLRVSFVDEELDKIHSSDLSPRTST-E 485
            HRVQITP +VYF GPEANLSNRVVRRFIDDIDNFLRVSFVDEELDK+HS DL+PR+S+ E
Sbjct: 423  HRVQITPLKVYFCGPEANLSNRVVRRFIDDIDNFLRVSFVDEELDKLHSIDLAPRSSSPE 482

Query: 486  KIERTSVYDRILSVLRNGIVIGGKKFEFLAFSASQLRENSFWMFAPREGLNAADIREWMG 545
               RT VYDR++SVL+NGIVIG KKFEFLAFSASQLRENSFWMFA R+GL+AADIREWMG
Sbjct: 483  NNTRTRVYDRVVSVLKNGIVIGDKKFEFLAFSASQLRENSFWMFASRKGLSAADIREWMG 542

Query: 546  DFREIRNVAKYAARLGQSFGSSRKTLCVEENEIEVIPDVEVERKNIKYCFSDGIGKISEA 605
            DFR+IRNVAKYAARLGQSFGSSRKTLCV+E+EIEVIPDVEVERKNI YCFSDGIGKIS+ 
Sbjct: 543  DFRQIRNVAKYAARLGQSFGSSRKTLCVKEHEIEVIPDVEVERKNIMYCFSDGIGKISKT 602

Query: 606  LAEMVAEKCGLISHTPSAFQIRYAGYKGVVAVDPTSKKKLSLRKSMLKYMSLDTQLDVLS 665
            LA+ VA+KCGL  HTPSAFQIRYAGYKGVVA+DPTS+KKLSLRKSMLKYMSLDTQLDVL 
Sbjct: 603  LAKKVAKKCGLTGHTPSAFQIRYAGYKGVVAIDPTSEKKLSLRKSMLKYMSLDTQLDVLL 662

Query: 666  WSKYQPCFLNRQVINLLSTLGIRDDVFVNQQKKAVDQLDSILRDPSKALEVLELMSPGEM 725
            WSKYQPCFLNRQVINLLSTLGI DDVFV +QK+A+DQLDSIL DPS+ALEVLELMSPGEM
Sbjct: 663  WSKYQPCFLNRQVINLLSTLGIGDDVFVKKQKEAIDQLDSILEDPSRALEVLELMSPGEM 722

Query: 726  TSILKDMLLFYNPHEEPFLNMMLRTFRADKLLDLRTKSRIFVPKGRTMMGCLDETRSLEY 785
            TSILK++L FY P+EEPFLNMML TFRA+KLLDL+TKSRIFVP+GRTMMGCLDETR+LEY
Sbjct: 723  TSILKELLSFYMPNEEPFLNMMLWTFRANKLLDLKTKSRIFVPRGRTMMGCLDETRTLEY 782

Query: 786  GQVFIHCSVPGRSSESNFVVKGKVVVAKNPCLHPGDVRVLDAVDVKTLHHMVDCVVFPQK 845
            GQVF+HCSVPGRSSE NFVVKGKVVVAKNPCLHPGDVR+LDA+DVK LHHMVDCVVFPQK
Sbjct: 783  GQVFVHCSVPGRSSEGNFVVKGKVVVAKNPCLHPGDVRLLDAIDVKALHHMVDCVVFPQK 842

Query: 846  GKRPHPNECSGSDLDGDLYFVCWDPELTCIRPIKPMSYEPAPTIQLDHDVTIEEVQEYFA 905
            GKRPHPNECSGSDLDGDLYFVCWD ELTCI+ +KPMSYEPAP+IQLDHDVTIEEVQ+YFA
Sbjct: 843  GKRPHPNECSGSDLDGDLYFVCWDSELTCIKQVKPMSYEPAPSIQLDHDVTIEEVQKYFA 902

Query: 906  NYMVNDGLGGIANAHTVFADKKPKKAMSAECIELAKLFSIAVDFPKTGVPANLPRSLRVH 965
            NYMVNDGLG IANAHTVFADK  KKAMSAECI+LAKLFSIAVDFPKTGVPANLPR+LRVH
Sbjct: 903  NYMVNDGLGAIANAHTVFADKNSKKAMSAECIKLAKLFSIAVDFPKTGVPANLPRNLRVH 962

Query: 966  QYPDFMEKPNKRSYISNGVIGKLFRGVKDVSSDINNIETFTREVAAKCYDPDMEVMGFEN 1025
            +YPDFM+KP+K +Y+SNGV+GKLFRGVKDVSSD+N  E FT+EVA KCYDPDMEV GFE 
Sbjct: 963  EYPDFMDKPDKPTYVSNGVLGKLFRGVKDVSSDVNTFEIFTKEVATKCYDPDMEVDGFEK 1022

Query: 1026 YLSEAFDYKSMYDFKLGNLMDYYGIETEPELVSGNILRMGKSFDKRNDMEQISLAMRSLR 1085
            YL EAFDYK+ YDFKLGNLMDYYGI+TEPELVSGNIL+M KSFDKRND+EQI+ AM+SLR
Sbjct: 1023 YLREAFDYKTKYDFKLGNLMDYYGIKTEPELVSGNILKMAKSFDKRNDLEQIAFAMKSLR 1082

Query: 1086 KEARGWFNEKGSKSIYNNNKDEDDEYAKASAWYHVTYHPNFWGRYNEGMQRDHFLSFPWC 1145
            KE R WFNE  SK  Y +   EDDEYA+ASAWY VTYHP++WGRYNEG QRDHFLSFPWC
Sbjct: 1083 KEVRSWFNENESKYTYED--IEDDEYARASAWYCVTYHPDYWGRYNEGTQRDHFLSFPWC 1137

Query: 1146 VSEKLIQIKREKM---ESSPVSSLIHKFGKLSFY 1174
            V++KLIQIKREKM    SSP+SSL + F  +S Y
Sbjct: 1143 VADKLIQIKREKMSLRNSSPMSSLQYNFDGMSLY 1137

[Close]

BLAST of Cp4.1LG01g18460 vs. NCBI nr
Match: gi|948561979|gb|ALM88235.1| (RNA-dependent RNA polymerase 1c [Cucumis sativus])

HSP 1 Score: 1604.7 bits (4154), Expect = 0.0e+00
Identity = 777/936 (83.01%), Postives = 848/936 (90.60%), Query Frame = 1


Query: 234  QLQGAPRIFKKCPSSSSSQFYSKESTGFRWIRDVDFTPSSCIGQSFALCFEVSPGDQLPS 293
            QLQGAPRIF+K PSSSSS  YS +ST FRWIRDVDFTPSSCIGQSF +C ++SP   LP 
Sbjct: 179  QLQGAPRIFRKTPSSSSSPLYSNKSTSFRWIRDVDFTPSSCIGQSFTICLQLSPSHHLPP 238

Query: 294  FFQTLVGYKEIYGPFKLSTGSAFSSNSNLVPIVTPPQPFDIPYKILFKINALVQHGYLPG 353
            FFQTLVGYK  Y PF L  GS+  SNSNLVPI+TPPQ FDI YKILFKINAL+QHGYL G
Sbjct: 239  FFQTLVGYKVTYAPFILHKGSSLVSNSNLVPIITPPQAFDISYKILFKINALLQHGYLSG 298

Query: 354  SALDDKFFRLVDPSRFRSDYIEYALEKLFSLKECCYEPQKWLKQQYLSFCSSMQLPWKAN 413
              LDD+FFRLVD SRF SDYIE+ALEKLF+LKECCY+PQKWLK QYLS+ +S QLPWK+N
Sbjct: 299  PTLDDEFFRLVDSSRFHSDYIEHALEKLFNLKECCYKPQKWLKDQYLSYYTSNQLPWKSN 358

Query: 414  ISLDDSLVYVHRVQITPARVYFRGPEANLSNRVVRRFIDDIDNFLRVSFVDEELDKIHSS 473
            ISLDD LVYVHRVQITP +VYF GPEANLSNRVVRRFI DIDNFLRVSFVDEELDK+HS 
Sbjct: 359  ISLDDGLVYVHRVQITPLKVYFCGPEANLSNRVVRRFIGDIDNFLRVSFVDEELDKLHSI 418

Query: 474  DLSPRTST-EKIERTSVYDRILSVLRNGIVIGGKKFEFLAFSASQLRENSFWMFAPREGL 533
            DL+PR+S+ E  +RT VYDR++S+L+NGIVIG KKFEFLAFSASQLRENSFWMFA REGL
Sbjct: 419  DLAPRSSSPENSQRTRVYDRVISILKNGIVIGNKKFEFLAFSASQLRENSFWMFASREGL 478

Query: 534  NAADIREWMGDFREIRNVAKYAARLGQSFGSSRKTLCVEENEIEVIPDVEVERKNIKYCF 593
            +AADIREWMGDF  IRNVAKYAARLGQSFGSSRKTLCVEE+EIEVIPDVEVERKNI YCF
Sbjct: 479  SAADIREWMGDFHHIRNVAKYAARLGQSFGSSRKTLCVEEHEIEVIPDVEVERKNIMYCF 538

Query: 594  SDGIGKISEALAEMVAEKCGLISHTPSAFQIRYAGYKGVVAVDPTSKKKLSLRKSMLKYM 653
            SDGIGKIS+ LA+ VAEKCGL SHTPSAFQIRYAGYKGVVA+DPTS+KKLSLRKSMLKYM
Sbjct: 539  SDGIGKISKTLAKKVAEKCGLTSHTPSAFQIRYAGYKGVVAIDPTSEKKLSLRKSMLKYM 598

Query: 654  SLDTQLDVLSWSKYQPCFLNRQVINLLSTLGIRDDVFVNQQKKAVDQLDSILRDPSKALE 713
            SLDTQLDVL WSKYQPCFLNRQVINLLSTLGIRDDVFV +QK+A+DQLDSIL DPS+ALE
Sbjct: 599  SLDTQLDVLLWSKYQPCFLNRQVINLLSTLGIRDDVFVKKQKEAIDQLDSILEDPSRALE 658

Query: 714  VLELMSPGEMTSILKDMLLFYNPHEEPFLNMMLRTFRADKLLDLRTKSRIFVPKGRTMMG 773
            VLELMSPGEMTSILK++L FY P++EPFLNMMLRTFRADKLLDLRTKSRIFVPKGRTMMG
Sbjct: 659  VLELMSPGEMTSILKELLSFYMPNQEPFLNMMLRTFRADKLLDLRTKSRIFVPKGRTMMG 718

Query: 774  CLDETRSLEYGQVFIHCSVPGRSSESNFVVKGKVVVAKNPCLHPGDVRVLDAVDVKTLHH 833
            CLDET++LEYGQVF+HCS+PGRSSE NFVVKGKVVVAKNPCLHPGDVR+LDA+DVK LHH
Sbjct: 719  CLDETQTLEYGQVFVHCSIPGRSSEGNFVVKGKVVVAKNPCLHPGDVRLLDAIDVKALHH 778

Query: 834  MVDCVVFPQKGKRPHPNECSGSDLDGDLYFVCWDPELTCIRPIKPMSYEPAPTIQLDHDV 893
            MVDCVVFPQKGKRPHPNECSGSDLDGDLYFVCWD ELTCI+ +KPMSY+PAPTIQLDHDV
Sbjct: 779  MVDCVVFPQKGKRPHPNECSGSDLDGDLYFVCWDTELTCIKQVKPMSYKPAPTIQLDHDV 838

Query: 894  TIEEVQEYFANYMVNDGLGGIANAHTVFADKKPKKAMSAECIELAKLFSIAVDFPKTGVP 953
            TIEEVQEYFANYMVNDGLG IANAHTVFADK  KKAMSAECI+LAKLFSIAVDFPKTGVP
Sbjct: 839  TIEEVQEYFANYMVNDGLGAIANAHTVFADKNSKKAMSAECIKLAKLFSIAVDFPKTGVP 898

Query: 954  ANLPRSLRVHQYPDFMEKPNKRSYISNGVIGKLFRGVKDVSSDINNIETFTREVAAKCYD 1013
            ANLPR+LRVH+YPDFM+KPNK +Y+SNGV+GKLFRGVKDVSSD++  E FTREVA KCYD
Sbjct: 899  ANLPRNLRVHEYPDFMDKPNKATYVSNGVLGKLFRGVKDVSSDVSAFEIFTREVATKCYD 958

Query: 1014 PDMEVMGFENYLSEAFDYKSMYDFKLGNLMDYYGIETEPELVSGNILRMGKSFDKRNDME 1073
            PDMEV GFE YL EAFDYK+ YDFKLGNLMDYYGI+TEPELVSGNIL+M KSFDKR D+E
Sbjct: 959  PDMEVDGFEKYLREAFDYKTKYDFKLGNLMDYYGIKTEPELVSGNILKMAKSFDKRKDLE 1018

Query: 1074 QISLAMRSLRKEARGWFNEKGSKSIYNNNKDEDDEYAKASAWYHVTYHPNFWGRYNEGMQ 1133
            QI+ AM+SLRKE R WFNE  SKS Y+   D  DEYA+ASAWY VTYHP++WG YNEG +
Sbjct: 1019 QIAFAMKSLRKEVRFWFNENESKSTYD---DIQDEYARASAWYCVTYHPDYWGCYNEGTK 1078

Query: 1134 RDHFLSFPWCVSEKLIQIKREKM---ESSPVSSLIH 1166
            RDHFLSFPWCV++KLIQIKREKM    SSP SSL+H
Sbjct: 1079 RDHFLSFPWCVADKLIQIKREKMSMRNSSPKSSLLH 1111

[Close]

BLAST of Cp4.1LG01g18460 vs. NCBI nr
Match: gi|778703938|ref|XP_011655453.1| (PREDICTED: probable RNA-dependent RNA polymerase 1 [Cucumis sativus])

HSP 1 Score: 1598.6 bits (4138), Expect = 0.0e+00
Identity = 773/938 (82.41%), Postives = 847/938 (90.30%), Query Frame = 1


Query: 234  QLQGAPRIFKKCPSSSSSQFYSKESTGFRWIRDVDFTPSSCIGQSFALCFEVSPGDQLPS 293
            QLQGAPRIF+K PSSSSS  YS +ST FRWIRDVDFTPSSCIGQSF +C ++SP   LP 
Sbjct: 179  QLQGAPRIFRKTPSSSSSPLYSNKSTSFRWIRDVDFTPSSCIGQSFTICLQLSPSHHLPP 238

Query: 294  FFQTLVGYKEIYGPFKLSTGSAFSSNSNLVPIVTPPQPFDIPYKILFKINALVQHGYLPG 353
            FFQTLVGYK  Y PF L  GS+  SNSNLVPI+TPPQ FDI YKILFKINAL+QHGYL G
Sbjct: 239  FFQTLVGYKVTYAPFILHKGSSLVSNSNLVPIITPPQAFDISYKILFKINALLQHGYLSG 298

Query: 354  SALDDKFFRLVDPSRFRSDYIEYALEKLFSLKECCYEPQKWLKQQYLSFCSSMQLPWKAN 413
              LDD+FFRLVD SRF SDYI++ALEKLF+LKECCY+PQKWLK QYLS+ +S QLPWK+N
Sbjct: 299  PTLDDEFFRLVDSSRFHSDYIDHALEKLFNLKECCYKPQKWLKDQYLSYYTSNQLPWKSN 358

Query: 414  ISLDDSLVYVHRVQITPARVYFRGPEANLSNRVVRRFIDDIDNFLRVSFVDEELDKIHSS 473
            ISLDD LVYVHRVQITP +VYF GPEANLSNRVVRRFI DIDNFLRVSFVDEELDK+HS 
Sbjct: 359  ISLDDGLVYVHRVQITPLKVYFCGPEANLSNRVVRRFIGDIDNFLRVSFVDEELDKLHSI 418

Query: 474  DLSPRTST-EKIERTSVYDRILSVLRNGIVIGGKKFEFLAFSASQLRENSFWMFAPREGL 533
            DL+PR+S+ E  +RT VYDR++SVL+NGIVIG KKFEFLAFSASQLRENSFWMFA REGL
Sbjct: 419  DLAPRSSSHENSQRTRVYDRVVSVLKNGIVIGNKKFEFLAFSASQLRENSFWMFASREGL 478

Query: 534  NAADIREWMGDFREIRNVAKYAARLGQSFGSSRKTLCVEENEIEVIPDVEVERKNIKYCF 593
            +AADIREWMGDF  IRNVAKYAARLGQSFGSSRKTLCVEE+EIEVIPDVEVERKNI YCF
Sbjct: 479  SAADIREWMGDFHHIRNVAKYAARLGQSFGSSRKTLCVEEHEIEVIPDVEVERKNIMYCF 538

Query: 594  SDGIGKISEALAEMVAEKCGLISHTPSAFQIRYAGYKGVVAVDPTSKKKLSLRKSMLKYM 653
            SDGIGKIS+ LA+ VAEKCGLI+HTPSAFQIRYAGYKGVVA+DPTSKKKLSLR SMLKYM
Sbjct: 539  SDGIGKISKTLAKKVAEKCGLINHTPSAFQIRYAGYKGVVAIDPTSKKKLSLRNSMLKYM 598

Query: 654  SLDTQLDVLSWSKYQPCFLNRQVINLLSTLGIRDDVFVNQQKKAVDQLDSILRDPSKALE 713
            SLDTQLDVLSWSKYQPCFLNRQVINLLSTLGI DDVFV +QK+A+DQLDSIL DPS+ALE
Sbjct: 599  SLDTQLDVLSWSKYQPCFLNRQVINLLSTLGIGDDVFVKKQKEAIDQLDSILEDPSRALE 658

Query: 714  VLELMSPGEMTSILKDMLLFYNPHEEPFLNMMLRTFRADKLLDLRTKSRIFVPKGRTMMG 773
            VLELMSPGEMTSILK++L FY P+EEPFLNMMLRTFRA+KLLDL+TKSRIFVP+GRTM+G
Sbjct: 659  VLELMSPGEMTSILKELLSFYMPNEEPFLNMMLRTFRANKLLDLKTKSRIFVPEGRTMIG 718

Query: 774  CLDETRSLEYGQVFIHCSVPGRSSESNFVVKGKVVVAKNPCLHPGDVRVLDAVDVKTLHH 833
            CLDETR+LEYGQVF+HCSVP RSSE NFVVKGK+VVAKNPCLHPGDVRVLDAVDVK LHH
Sbjct: 719  CLDETRTLEYGQVFVHCSVPRRSSEGNFVVKGKIVVAKNPCLHPGDVRVLDAVDVKALHH 778

Query: 834  MVDCVVFPQKGKRPHPNECSGSDLDGDLYFVCWDPELTCIRPIKPMSYEPAPTIQLDHDV 893
            MVDCVVFPQKGKRPHPNECSGSDLDGDLYF CWD ELTCI+ +KPM+YEPAPTIQL+HDV
Sbjct: 779  MVDCVVFPQKGKRPHPNECSGSDLDGDLYFACWDLELTCIKQVKPMNYEPAPTIQLNHDV 838

Query: 894  TIEEVQEYFANYMVNDGLGGIANAHTVFADKKPKKAMSAECIELAKLFSIAVDFPKTGVP 953
            TIEE+QEYFANYMVNDG+G IANAHTVFADK  KKAMS ECI+LAKLFSIAVDFPKTGVP
Sbjct: 839  TIEEIQEYFANYMVNDGIGAIANAHTVFADKNSKKAMSVECIKLAKLFSIAVDFPKTGVP 898

Query: 954  ANLPRSLRVHQYPDFMEKPNKRSYISNGVIGKLFRGVKDVSSDINNIETFTREVAAKCYD 1013
            ANLPR+LRVH+YPDFM+KPNK +Y+SNGV+GKLFRGVKDVSSD+N  E FTREVA K YD
Sbjct: 899  ANLPRNLRVHEYPDFMDKPNKPTYVSNGVLGKLFRGVKDVSSDVNTFEIFTREVATKYYD 958

Query: 1014 PDMEVMGFENYLSEAFDYKSMYDFKLGNLMDYYGIETEPELVSGNILRMGKSFDKRNDME 1073
            PDMEV GFE YL EAFDYK+ YDFKLGNLMDYYGI+TEPELVSGN+L+M KSFDKRND+E
Sbjct: 959  PDMEVDGFEKYLREAFDYKTKYDFKLGNLMDYYGIKTEPELVSGNVLKMAKSFDKRNDLE 1018

Query: 1074 QISLAMRSLRKEARGWFNEKGSKSIYNNNKDEDDEYAKASAWYHVTYHPNFWGRYNEGMQ 1133
            QI+ AM+SLRKE R WFNE  SK  Y+   D +DEYAKASAWY+VTYHP++WG YNEGMQ
Sbjct: 1019 QITFAMKSLRKEVRSWFNENESKFTYD---DIEDEYAKASAWYYVTYHPDYWGCYNEGMQ 1078

Query: 1134 RDHFLSFPWCVSEKLIQIKREKM---ESSPVSSLIHKF 1168
            RDHFLSFPWCV++KLIQIKR+KM    S PVSSL H F
Sbjct: 1079 RDHFLSFPWCVADKLIQIKRDKMTLKNSYPVSSLFHNF 1113

[Close]

BLAST of Cp4.1LG01g18460 vs. NCBI nr
Match: gi|700196297|gb|KGN51474.1| (hypothetical protein Csa_5G564290 [Cucumis sativus])

HSP 1 Score: 1598.6 bits (4138), Expect = 0.0e+00
Identity = 773/938 (82.41%), Postives = 847/938 (90.30%), Query Frame = 1


Query: 234  QLQGAPRIFKKCPSSSSSQFYSKESTGFRWIRDVDFTPSSCIGQSFALCFEVSPGDQLPS 293
            QLQGAPRIF+K PSSSSS  YS +ST FRWIRDVDFTPSSCIGQSF +C ++SP   LP 
Sbjct: 179  QLQGAPRIFRKTPSSSSSPLYSNKSTSFRWIRDVDFTPSSCIGQSFTICLQLSPSHHLPP 238

Query: 294  FFQTLVGYKEIYGPFKLSTGSAFSSNSNLVPIVTPPQPFDIPYKILFKINALVQHGYLPG 353
            FFQTLVGYK  Y PF L  GS+  SNSNLVPI+TPPQ FDI YKILFKINAL+QHGYL G
Sbjct: 239  FFQTLVGYKVTYAPFILHKGSSLVSNSNLVPIITPPQAFDISYKILFKINALLQHGYLSG 298

Query: 354  SALDDKFFRLVDPSRFRSDYIEYALEKLFSLKECCYEPQKWLKQQYLSFCSSMQLPWKAN 413
              LDD+FFRLVD SRF SDYI++ALEKLF+LKECCY+PQKWLK QYLS+ +S QLPWK+N
Sbjct: 299  PTLDDEFFRLVDSSRFHSDYIDHALEKLFNLKECCYKPQKWLKDQYLSYYTSNQLPWKSN 358

Query: 414  ISLDDSLVYVHRVQITPARVYFRGPEANLSNRVVRRFIDDIDNFLRVSFVDEELDKIHSS 473
            ISLDD LVYVHRVQITP +VYF GPEANLSNRVVRRFI DIDNFLRVSFVDEELDK+HS 
Sbjct: 359  ISLDDGLVYVHRVQITPLKVYFCGPEANLSNRVVRRFIGDIDNFLRVSFVDEELDKLHSI 418

Query: 474  DLSPRTST-EKIERTSVYDRILSVLRNGIVIGGKKFEFLAFSASQLRENSFWMFAPREGL 533
            DL+PR+S+ E  +RT VYDR++SVL+NGIVIG KKFEFLAFSASQLRENSFWMFA REGL
Sbjct: 419  DLAPRSSSHENSQRTRVYDRVVSVLKNGIVIGNKKFEFLAFSASQLRENSFWMFASREGL 478

Query: 534  NAADIREWMGDFREIRNVAKYAARLGQSFGSSRKTLCVEENEIEVIPDVEVERKNIKYCF 593
            +AADIREWMGDF  IRNVAKYAARLGQSFGSSRKTLCVEE+EIEVIPDVEVERKNI YCF
Sbjct: 479  SAADIREWMGDFHHIRNVAKYAARLGQSFGSSRKTLCVEEHEIEVIPDVEVERKNIMYCF 538

Query: 594  SDGIGKISEALAEMVAEKCGLISHTPSAFQIRYAGYKGVVAVDPTSKKKLSLRKSMLKYM 653
            SDGIGKIS+ LA+ VAEKCGLI+HTPSAFQIRYAGYKGVVA+DPTSKKKLSLR SMLKYM
Sbjct: 539  SDGIGKISKTLAKKVAEKCGLINHTPSAFQIRYAGYKGVVAIDPTSKKKLSLRNSMLKYM 598

Query: 654  SLDTQLDVLSWSKYQPCFLNRQVINLLSTLGIRDDVFVNQQKKAVDQLDSILRDPSKALE 713
            SLDTQLDVLSWSKYQPCFLNRQVINLLSTLGI DDVFV +QK+A+DQLDSIL DPS+ALE
Sbjct: 599  SLDTQLDVLSWSKYQPCFLNRQVINLLSTLGIGDDVFVKKQKEAIDQLDSILEDPSRALE 658

Query: 714  VLELMSPGEMTSILKDMLLFYNPHEEPFLNMMLRTFRADKLLDLRTKSRIFVPKGRTMMG 773
            VLELMSPGEMTSILK++L FY P+EEPFLNMMLRTFRA+KLLDL+TKSRIFVP+GRTM+G
Sbjct: 659  VLELMSPGEMTSILKELLSFYMPNEEPFLNMMLRTFRANKLLDLKTKSRIFVPEGRTMIG 718

Query: 774  CLDETRSLEYGQVFIHCSVPGRSSESNFVVKGKVVVAKNPCLHPGDVRVLDAVDVKTLHH 833
            CLDETR+LEYGQVF+HCSVP RSSE NFVVKGK+VVAKNPCLHPGDVRVLDAVDVK LHH
Sbjct: 719  CLDETRTLEYGQVFVHCSVPRRSSEGNFVVKGKIVVAKNPCLHPGDVRVLDAVDVKALHH 778

Query: 834  MVDCVVFPQKGKRPHPNECSGSDLDGDLYFVCWDPELTCIRPIKPMSYEPAPTIQLDHDV 893
            MVDCVVFPQKGKRPHPNECSGSDLDGDLYF CWD ELTCI+ +KPM+YEPAPTIQL+HDV
Sbjct: 779  MVDCVVFPQKGKRPHPNECSGSDLDGDLYFACWDLELTCIKQVKPMNYEPAPTIQLNHDV 838

Query: 894  TIEEVQEYFANYMVNDGLGGIANAHTVFADKKPKKAMSAECIELAKLFSIAVDFPKTGVP 953
            TIEE+QEYFANYMVNDG+G IANAHTVFADK  KKAMS ECI+LAKLFSIAVDFPKTGVP
Sbjct: 839  TIEEIQEYFANYMVNDGIGAIANAHTVFADKNSKKAMSVECIKLAKLFSIAVDFPKTGVP 898

Query: 954  ANLPRSLRVHQYPDFMEKPNKRSYISNGVIGKLFRGVKDVSSDINNIETFTREVAAKCYD 1013
            ANLPR+LRVH+YPDFM+KPNK +Y+SNGV+GKLFRGVKDVSSD+N  E FTREVA K YD
Sbjct: 899  ANLPRNLRVHEYPDFMDKPNKPTYVSNGVLGKLFRGVKDVSSDVNTFEIFTREVATKYYD 958

Query: 1014 PDMEVMGFENYLSEAFDYKSMYDFKLGNLMDYYGIETEPELVSGNILRMGKSFDKRNDME 1073
            PDMEV GFE YL EAFDYK+ YDFKLGNLMDYYGI+TEPELVSGN+L+M KSFDKRND+E
Sbjct: 959  PDMEVDGFEKYLREAFDYKTKYDFKLGNLMDYYGIKTEPELVSGNVLKMAKSFDKRNDLE 1018

Query: 1074 QISLAMRSLRKEARGWFNEKGSKSIYNNNKDEDDEYAKASAWYHVTYHPNFWGRYNEGMQ 1133
            QI+ AM+SLRKE R WFNE  SK  Y+   D +DEYAKASAWY+VTYHP++WG YNEGMQ
Sbjct: 1019 QITFAMKSLRKEVRSWFNENESKFTYD---DIEDEYAKASAWYYVTYHPDYWGCYNEGMQ 1078

Query: 1134 RDHFLSFPWCVSEKLIQIKREKM---ESSPVSSLIHKF 1168
            RDHFLSFPWCV++KLIQIKR+KM    S PVSSL H F
Sbjct: 1079 RDHFLSFPWCVADKLIQIKRDKMTLKNSYPVSSLFHNF 1113

[Close]

BLAST of Cp4.1LG01g18460 vs. NCBI nr
Match: gi|659074597|ref|XP_008437690.1| (PREDICTED: probable RNA-dependent RNA polymerase 1, partial [Cucumis melo])

HSP 1 Score: 1592.0 bits (4121), Expect = 0.0e+00
Identity = 773/941 (82.15%), Postives = 845/941 (89.80%), Query Frame = 1


Query: 237  GAPRIFKKCPSSSSSQFYSKESTGFRWIRDVDFTPSSCIGQSFALCFEVSPGDQLPSFFQ 296
            GAPRIF+K PSSSSS  YS ES  FRWIRDVDFTPSSCIGQSF LC + SP   LP FFQ
Sbjct: 1    GAPRIFRKTPSSSSSPLYSNESNSFRWIRDVDFTPSSCIGQSFTLCLQFSPSHHLPPFFQ 60

Query: 297  TLVGYKEIYGPFKLSTGSAFSSNSNLVPIVTPPQPFDIPYKILFKINALVQHGYLPGSAL 356
            TLVGYK  Y PF L  GS+F SNSNLVPI+TPPQ FDI YKILFKINAL+Q GYL G  L
Sbjct: 61   TLVGYKVTYDPFILRKGSSFVSNSNLVPIITPPQAFDISYKILFKINALLQRGYLSGPTL 120

Query: 357  DDKFFRLVDPSRFRSDYIEYALEKLFSLKECCYEPQKWLKQQYLSFCSSMQLPWKANISL 416
            DD+FFRLVD SRF  DYIE+ALEKLF+LKECCY+PQKWLK QYLS+  S QLPWK N+SL
Sbjct: 121  DDEFFRLVDSSRFHPDYIEHALEKLFNLKECCYKPQKWLKDQYLSYYVSNQLPWKPNVSL 180

Query: 417  DDSLVYVHRVQITPARVYFRGPEANLSNRVVRRFIDDIDNFLRVSFVDEELDKIHSSDLS 476
            DD LVYVHRVQITP +VYF GPEANLSNRVVRRFIDDIDNFLRVSFVDEELDK+HS DL+
Sbjct: 181  DDGLVYVHRVQITPLKVYFCGPEANLSNRVVRRFIDDIDNFLRVSFVDEELDKLHSIDLA 240

Query: 477  PRTST-EKIERTSVYDRILSVLRNGIVIGGKKFEFLAFSASQLRENSFWMFAPREGLNAA 536
            PR+S+ E   RT VYDR++SVL+NGIVIG KKFEFLAFSASQLRENSFWMFA R+GL+AA
Sbjct: 241  PRSSSPENNTRTRVYDRVVSVLKNGIVIGDKKFEFLAFSASQLRENSFWMFASRKGLSAA 300

Query: 537  DIREWMGDFREIRNVAKYAARLGQSFGSSRKTLCVEENEIEVIPDVEVERKNIKYCFSDG 596
            DIREWMGDFR+IRNVAKYAARLGQSFGSSRKTLCV+E+EIEVIPDVEVERKNI YCFSDG
Sbjct: 301  DIREWMGDFRQIRNVAKYAARLGQSFGSSRKTLCVKEHEIEVIPDVEVERKNIMYCFSDG 360

Query: 597  IGKISEALAEMVAEKCGLISHTPSAFQIRYAGYKGVVAVDPTSKKKLSLRKSMLKYMSLD 656
            IGKIS+ LA+ VA+KCGL  HTPSAFQIRYAGYKGVVA+DPTS+KKLSLRKSMLKYMSLD
Sbjct: 361  IGKISKTLAKKVAKKCGLTGHTPSAFQIRYAGYKGVVAIDPTSEKKLSLRKSMLKYMSLD 420

Query: 657  TQLDVLSWSKYQPCFLNRQVINLLSTLGIRDDVFVNQQKKAVDQLDSILRDPSKALEVLE 716
            TQLDVL WSKYQPCFLNRQVINLLSTLGI DDVFV +QK+A+DQLDSIL DPS+ALEVLE
Sbjct: 421  TQLDVLLWSKYQPCFLNRQVINLLSTLGIGDDVFVKKQKEAIDQLDSILEDPSRALEVLE 480

Query: 717  LMSPGEMTSILKDMLLFYNPHEEPFLNMMLRTFRADKLLDLRTKSRIFVPKGRTMMGCLD 776
            LMSPGEMTSILK++L FY P+EEPFLNMML TFRA+KLLDL+TKSRIFVP+GRTMMGCLD
Sbjct: 481  LMSPGEMTSILKELLSFYMPNEEPFLNMMLWTFRANKLLDLKTKSRIFVPRGRTMMGCLD 540

Query: 777  ETRSLEYGQVFIHCSVPGRSSESNFVVKGKVVVAKNPCLHPGDVRVLDAVDVKTLHHMVD 836
            ETR+LEYGQVF+HCSVPGRSSE NFVVKGKVVVAKNPCLHPGDVR+LDA+DVK LHHMVD
Sbjct: 541  ETRTLEYGQVFVHCSVPGRSSEGNFVVKGKVVVAKNPCLHPGDVRLLDAIDVKALHHMVD 600

Query: 837  CVVFPQKGKRPHPNECSGSDLDGDLYFVCWDPELTCIRPIKPMSYEPAPTIQLDHDVTIE 896
            CVVFPQKGKRPHPNECSGSDLDGDLYFVCWD ELTCI+ +KPMSYEPAP+IQLDHDVTIE
Sbjct: 601  CVVFPQKGKRPHPNECSGSDLDGDLYFVCWDSELTCIKQVKPMSYEPAPSIQLDHDVTIE 660

Query: 897  EVQEYFANYMVNDGLGGIANAHTVFADKKPKKAMSAECIELAKLFSIAVDFPKTGVPANL 956
            EVQ+YFANYMVNDGLG IANAHTVFADK  KKAMSAECI+LAKLFSIAVDFPKTGVPANL
Sbjct: 661  EVQKYFANYMVNDGLGAIANAHTVFADKNSKKAMSAECIKLAKLFSIAVDFPKTGVPANL 720

Query: 957  PRSLRVHQYPDFMEKPNKRSYISNGVIGKLFRGVKDVSSDINNIETFTREVAAKCYDPDM 1016
            PR+LRVH+YPDFM+KP+K +Y+SNGV+GKLFRGVKDVSSD+N  E FT+EVA KCYDPDM
Sbjct: 721  PRNLRVHEYPDFMDKPDKPTYVSNGVLGKLFRGVKDVSSDVNTFEIFTKEVATKCYDPDM 780

Query: 1017 EVMGFENYLSEAFDYKSMYDFKLGNLMDYYGIETEPELVSGNILRMGKSFDKRNDMEQIS 1076
            EV GFE YL EAFDYK+ YDFKLGNLMDYYGI+TEPELVSGNIL+M KSFDKRND+EQI+
Sbjct: 781  EVDGFEKYLREAFDYKTKYDFKLGNLMDYYGIKTEPELVSGNILKMAKSFDKRNDLEQIA 840

Query: 1077 LAMRSLRKEARGWFNEKGSKSIYNNNKDEDDEYAKASAWYHVTYHPNFWGRYNEGMQRDH 1136
             AM+SLRKE R WFNE  SK  Y +   EDDEYA+ASAWY VTYHP++WGRYNEG QRDH
Sbjct: 841  FAMKSLRKEVRSWFNENESKYTYED--IEDDEYARASAWYCVTYHPDYWGRYNEGTQRDH 900

Query: 1137 FLSFPWCVSEKLIQIKREKM---ESSPVSSLIHKFGKLSFY 1174
            FLSFPWCV++KLIQIKREKM    SSP+SSL + F  +S Y
Sbjct: 901  FLSFPWCVADKLIQIKREKMSLRNSSPMSSLQYNFDGMSLY 939

The following BLAST results are available for this feature:

BLAST of Cp4.1LG01g18460 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RDR1_ARATH	0.0e+00	61.25	RNA-dependent RNA polymerase 1 OS=Arabidopsis thaliana GN=RDR1 PE=2 SV=1	[more]
RDR1_ORYSJ	5.5e-265	63.12	Probable RNA-dependent RNA polymerase 1 OS=Oryza sativa subsp. japonica GN=RDR1 ...	[more]
RDR2_ARATH	1.2e-206	42.22	RNA-dependent RNA polymerase 2 OS=Arabidopsis thaliana GN=RDR2 PE=1 SV=1	[more]
RDR2_ORYSJ	7.5e-206	42.02	Probable RNA-dependent RNA polymerase 2 OS=Oryza sativa subsp. japonica GN=RDR2 ...	[more]
RDR6_ARATH	2.4e-159	38.45	RNA-dependent RNA polymerase 6 OS=Arabidopsis thaliana GN=RDR6 PE=1 SV=1	[more]

BLAST of Cp4.1LG01g18460 vs. TrEMBL


Match Name	E-value	Identity	Description
E5GB63_CUCME	0.0e+00	74.70	RNA-dependent RNA polymerase OS=Cucumis melo subsp. melo PE=4 SV=1	[more]
A0A0S1YCZ4_CUCSA	0.0e+00	83.01	RNA-dependent RNA polymerase 1c OS=Cucumis sativus GN=RDR1c PE=2 SV=1	[more]
A0A0A0KRH3_CUCSA	0.0e+00	82.41	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G564290 PE=4 SV=1	[more]
F6HFC7_VITVI	0.0e+00	65.42	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_01s0011g05880 PE=4 SV=...	[more]
B3SND7_GOSHI	0.0e+00	62.26	RNA-dependent RNA polymerase OS=Gossypium hirsutum PE=4 SV=1	[more]

BLAST of Cp4.1LG01g18460 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G14790.1	0.0e+00	61.25	RNA-dependent RNA polymerase 1	[more]
AT4G11130.1	6.6e-208	42.22	RNA-dependent RNA polymerase 2	[more]
AT3G49500.1	1.3e-160	38.45	RNA-dependent RNA polymerase 6	[more]
AT2G19930.1	2.5e-29	27.55	RNA-dependent RNA polymerase family protein	[more]
AT2G19910.1	5.5e-29	27.17	RNA-dependent RNA polymerase family protein	[more]

BLAST of Cp4.1LG01g18460 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|307135834\|gb\|ADN33705.1\|	0.0e+00	74.70	RNA-dependent RNA polymerase [Cucumis melo subsp. melo]	[more]
gi\|948561979\|gb\|ALM88235.1\|	0.0e+00	83.01	RNA-dependent RNA polymerase 1c [Cucumis sativus]	[more]
gi\|778703938\|ref\|XP_011655453.1\|	0.0e+00	82.41	PREDICTED: probable RNA-dependent RNA polymerase 1 [Cucumis sativus]	[more]
gi\|700196297\|gb\|KGN51474.1\|	0.0e+00	82.41	hypothetical protein Csa_5G564290 [Cucumis sativus]	[more]
gi\|659074597\|ref\|XP_008437690.1\|	0.0e+00	82.15	PREDICTED: probable RNA-dependent RNA polymerase 1, partial [Cucumis melo]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0003968	RNA-directed RNA polymerase activity

Vocabulary: **INTERPRO**
Term	Definition
IPR007855	RNA-dep_RNA_pol_euk-typ

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006952	defense response
biological_process	GO:0071310	cellular response to organic substance
biological_process	GO:0031047	gene silencing by RNA
biological_process	GO:0080090	regulation of primary metabolic process
biological_process	GO:0010468	regulation of gene expression
biological_process	GO:0031347	regulation of defense response
biological_process	GO:0006796	phosphate-containing compound metabolic process
biological_process	GO:0048519	negative regulation of biological process
biological_process	GO:0006144	purine nucleobase metabolic process
biological_process	GO:1901701	cellular response to oxygen-containing compound
biological_process	GO:0045087	innate immune response
biological_process	GO:0071229	cellular response to acid chemical
biological_process	GO:0006464	cellular protein modification process
biological_process	GO:0001172	transcription, RNA-templated
biological_process	GO:0007165	signal transduction
biological_process	GO:0051707	response to other organism
biological_process	GO:0060255	regulation of macromolecule metabolic process
biological_process	GO:0031323	regulation of cellular metabolic process
cellular_component	GO:0031379	RNA-directed RNA polymerase complex
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003968	RNA-directed RNA polymerase activity
molecular_function	GO:1901363	heterocyclic compound binding
molecular_function	GO:0097159	organic cyclic compound binding
molecular_function	GO:0000166	nucleotide binding
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003676	nucleic acid binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG01g18460.1	Cp4.1LG01g18460.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007855	RNA-dependent RNA polymerase, eukaryotic-type	PANTHER	PTHR23079	RNA-DEPENDENT RNA POLYMERASE	coord: 205..1156 score: 0.0coord: 21..187 score:
IPR007855	RNA-dependent RNA polymerase, eukaryotic-type	PFAM	PF05183	RdRP	coord: 428..989 score: 4.2E
None	No IPR available	PANTHER	PTHR23079:SF9	RNA-DEPENDENT RNA POLYMERASE 1	coord: 205..1156 score: 0.0coord: 21..187 score:

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cp4.1LG01g18460	Cucsa.012120	Cucumber (Gy14) v1	cgycpeB0523
Cp4.1LG01g18460	CmaCh04G021320	Cucurbita maxima (Rimu)	cmacpeB721
Cp4.1LG01g18460	Cla003960	Watermelon (97103) v1	cpewmB440
Cp4.1LG01g18460	Csa5G544050	Cucumber (Chinese Long) v2	cpecuB455
Cp4.1LG01g18460	MELO3C005257	Melon (DHL92) v3.5.1	cpemeB353
Cp4.1LG01g18460	ClCG01G006600	Watermelon (Charleston Gray)	cpewcgB370
Cp4.1LG01g18460	CSPI05G18660	Wild cucumber (PI 183967)	cpecpiB454
Cp4.1LG01g18460	Lsi09G006940	Bottle gourd (USVL1VR-Ls)	cpelsiB311
Cp4.1LG01g18460	MELO3C005257.2	Melon (DHL92) v3.6.1	cpemedB412
Cp4.1LG01g18460	CsaV3_5G027970	Cucumber (Chinese Long) v3	cpecucB0547
Cp4.1LG01g18460	Bhi12G000832	Wax gourd	cpewgoB0491
Cp4.1LG01g18460	CsGy5G018660	Cucumber (Gy14) v2	cgybcpeB651
Cp4.1LG01g18460	Carg25244	Silver-seed gourd	carcpeB1228

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cp4.1LG01g18460	Cucurbita pepo (Zucchini)	cpecpeB199
Cp4.1LG01g18460	Cucurbita maxima (Rimu)	cmacpeB318
Cp4.1LG01g18460	Cucurbita moschata (Rifu)	cmocpeB280
Cp4.1LG01g18460	Cucurbita moschata (Rifu)	cmocpeB673
Cp4.1LG01g18460	Wild cucumber (PI 183967)	cpecpiB444
Cp4.1LG01g18460	Cucumber (Chinese Long) v2	cpecuB443