Cp4.1LG01g17900 (gene) Cucurbita pepo (Zucchini)

NameCp4.1LG01g17900
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionIntegrase-type DNA-binding superfamily protein
LocationCp4.1LG01 : 14340944 .. 14342042 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
CTTACGAATCAGAGATGTTTTGGAAAAAAATCAAAATCCAGACCGGAAGAACCGAAAATGACACGGAAAATCCGCGTCATCTGTGACGATCCAGATGCTACCGATTTATCTTCCAGCGAAGATGAAGGTGAAATCGAAACGAGATCCCTTAAATTTAAACGAATCATTGGAGAAATCCACCTCCCCTGCTTTCCTTACCAGTCGAAATCGATTGATGTAACCACTACTACTCCGAGCTCTTCACAGGATAGCAACAATGGCAGCAAAAACCCAGAGCTGAAGAAGAAGAGGGTTTTAGGGACTAAAACCCTTTCAACCAGAAAAACCGCCTCCCAATACAGAGGAGTTCGTCAAAGAAAATGGGGGAAATGGGCGGCTGAAATCCGAGACCCTTTCAAAGGAGCTCGCATTTGGCTCGGAACTTACAACACTGCTGAAGAAGCCTCTCAGGCCTACGAATCAAAGCGTCTCGAGTTCGAATCCGCCATGGCTGCCGCAACACCGAAAAGCAGCAACATCTCTTCCTCTTCCTCCACCGAGGAGATCGAGGAAGAATCCGACAGCGTCGTGTCTCAAACATCTCCAGCCGCCGACATTGTCGAAATGGAAACCTCTTCCTTTGTTTCAATCAAAGAGGAGGAACTACAAATGCCCGAATTGGGATTCGTGGGCGAGGGTTTGGAAACAAATCTAGGGTTAGTACCGGAACTGGACCCCTTTTTCATGGACGACATTGGGCAATTCTTGGACGACTTCACCGCCATGGACGACCTTCATATATTTGGGTTTGACGACGACGACGACGACGAACCCAGTGGACTGCCGGATTGCGACTTCAACGATTTTGGGAACGTTGACCTATCTTGTTGGGTGGATGAAGCTCTGAATGTGCCTTGCTCATGACAAGTTTTGCAGATTAGGGTTGAAAGAAATGAGTGTTGTTTATTTTTTCGTTAAATTTGTTATTATTATGATGATGATTCTGTGGAGGTTGGACTGATTTTCTCGGGAAAATGTTAAGATTTTCCGGGAAATTTTGTTAGTATTATTTTTTTGTTTTATGGAGAGAAGAGGTCCATATGTTCTGGGTTTTGGTGCG

mRNA sequence

CTTACGAATCAGAGATGTTTTGGAAAAAAATCAAAATCCAGACCGGAAGAACCGAAAATGACACGGAAAATCCGCGTCATCTGTGACGATCCAGATGCTACCGATTTATCTTCCAGCGAAGATGAAGGTGAAATCGAAACGAGATCCCTTAAATTTAAACGAATCATTGGAGAAATCCACCTCCCCTGCTTTCCTTACCAGTCGAAATCGATTGATATCGAGGAAGAATCCGACAGCGTCGTGTCTCAAACATCTCCAGCCGCCGACATTGTCGAAATGGAAACCTCTTCCTTTGTTTCAATCAAAGAGGAGGAACTACAAATGCCCGAATTGGGATTCGTGGGCGAGGGTTTGGAAACAAATCTAGGGTTAGTACCGGAACTGGACCCCTTTTTCATGGACGACATTGGGCAATTCTTGGACGACTTCACCGCCATGGACGACCTTCATATATTTGGGTTTGACGACGACGACGACGACGAACCCAGTGGACTGCCGGATTGCGACTTCAACGATTTTGGGAACGTTGACCTATCTTGTTGGGTGGATGAAGCTCTGAATAGAAGAGGTCCATATGTTCTGGGTTTTGGTGCG

Coding sequence (CDS)

CTTACGAATCAGAGATGTTTTGGAAAAAAATCAAAATCCAGACCGGAAGAACCGAAAATGACACGGAAAATCCGCGTCATCTGTGACGATCCAGATGCTACCGATTTATCTTCCAGCGAAGATGAAGGTGAAATCGAAACGAGATCCCTTAAATTTAAACGAATCATTGGAGAAATCCACCTCCCCTGCTTTCCTTACCAGTCGAAATCGATTGATATCGAGGAAGAATCCGACAGCGTCGTGTCTCAAACATCTCCAGCCGCCGACATTGTCGAAATGGAAACCTCTTCCTTTGTTTCAATCAAAGAGGAGGAACTACAAATGCCCGAATTGGGATTCGTGGGCGAGGGTTTGGAAACAAATCTAGGGTTAGTACCGGAACTGGACCCCTTTTTCATGGACGACATTGGGCAATTCTTGGACGACTTCACCGCCATGGACGACCTTCATATATTTGGGTTTGACGACGACGACGACGACGAACCCAGTGGACTGCCGGATTGCGACTTCAACGATTTTGGGAACGTTGACCTATCTTGTTGGGTGGATGAAGCTCTGAATAGAAGAGGTCCATATGTTCTGGGTTTTGGTGCG

Protein sequence

LTNQRCFGKKSKSRPEEPKMTRKIRVICDDPDATDLSSSEDEGEIETRSLKFKRIIGEIHLPCFPYQSKSIDIEEESDSVVSQTSPAADIVEMETSSFVSIKEEELQMPELGFVGEGLETNLGLVPELDPFFMDDIGQFLDDFTAMDDLHIFGFDDDDDDEPSGLPDCDFNDFGNVDLSCWVDEALNRRGPYVLGFGA
BLAST of Cp4.1LG01g17900 vs. TrEMBL
Match: A0A0A0K880_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G039270 PE=4 SV=1)

HSP 1 Score: 168.3 bits (425), Expect = 9.3e-39
Identity = 93/131 (70.99%), Postives = 104/131 (79.39%), Query Frame = 1

Query: 68  SKSIDIEEESDSVVSQTSPAADIVEMETSSFVSIKEEE-----------LQMPELGFVGE 127
           S S + EEESDSVVSQTSPAA I+EMETSS V IKE+E           LQ+P+LGFV E
Sbjct: 188 SSSEENEEESDSVVSQTSPAAAILEMETSSSVLIKEDEEEMIDTNLINELQVPDLGFVDE 247

Query: 128 GLETNLGLVPELDPFFMDDIGQFLDDFTAMDDLHIFGFDDDDDDEPSGLPDCDFNDFGNV 187
           G+E NLGL PELDPFFMDDIGQFLDDF+AMDD+ I+GF   DDD PS LPDCDF+DFGN 
Sbjct: 248 GMEINLGL-PELDPFFMDDIGQFLDDFSAMDDIQIYGF---DDDVPSCLPDCDFDDFGND 307

BLAST of Cp4.1LG01g17900 vs. TrEMBL
Match: W9RLP9_9ROSA (Ethylene-responsive transcription factor OS=Morus notabilis GN=L484_014665 PE=4 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 5.5e-15
Identity = 47/92 (51.09%), Postives = 60/92 (65.22%), Query Frame = 1

Query: 102 KEEELQMPELGFVGEGL-----ETNLGLVPELDPFFMDDIGQFL-DDFTAMDDLHIFGFD 161
           K  ++ M +L F+ E L     E  LGL PE D   +DD GQFL DDF+++DD+ IFGFD
Sbjct: 248 KSVDVDMLDLSFMDEALASLPFEQELGLAPEFDQLLLDDFGQFLNDDFSSIDDVQIFGFD 307

Query: 162 DDDDDEPSGLPDCDFNDFGNVDLSCWVDEALN 188
                EPS LPDCDF D G  D++CW+D+ALN
Sbjct: 308 GV---EPSELPDCDFEDLGKDDMACWMDDALN 336

BLAST of Cp4.1LG01g17900 vs. TrEMBL
Match: M5XED2_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa008514mg PE=4 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 3.7e-11
Identity = 48/133 (36.09%), Postives = 81/133 (60.90%), Query Frame = 1

Query: 75  EESDSVVSQTSPAADIVEMETSS------FVSIKEE---------ELQMPELGFVGEGL- 134
           E+SDS +S+ SP++ ++++ETS+       V +++E         ELQ+P+LGF+ + L 
Sbjct: 196 EDSDSALSRRSPSS-VLDLETSASNNIGNVVDLEKEVVDDSPDLGELQIPDLGFLDDPLG 255

Query: 135 ----ETNLGLVPELDPFFMDDIGQFLDDFTAMDDLHIFGFDDDDDDEPSGLPDCDFNDFG 188
               E  L L PELD   +++ G+F ++F++++D+ I G +     EP+ LPD  F D G
Sbjct: 256 SLPFENELSLGPELDSLCLEEFGKFFNEFSSIEDVQIGGINGY---EPTSLPDFYFEDLG 315

BLAST of Cp4.1LG01g17900 vs. TrEMBL
Match: A0A0A0KWF1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G609620 PE=4 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 9.1e-10
Identity = 54/167 (32.34%), Postives = 88/167 (52.69%), Query Frame = 1

Query: 37  SSSEDEGEIETRSLKFKRIIGEIHLPCFPYQSKS----IDIEEESDSVVSQTSPAADIVE 96
           ++ E     E+R L+F+ +  E+ +      S S    +  E  +++ VS TSP++ ++E
Sbjct: 143 TAEEASQAYESRRLQFETMAAEMAVEEEGKGSGSSSTPVFSESTAETTVSHTSPSS-VLE 202

Query: 97  METSSFVS--IKEEELQMPE-----LGFVGEGLETN-----LGLVPELDPFFMDDIGQFL 156
              S+  S  +KE    + E     + ++ EG  +N     + +  + D    D IG FL
Sbjct: 203 WADSTVQSHDLKEGTESIKEETDSNMNYLQEGDPSNPFMEEISMGIDFDSILADGIGMFL 262

Query: 157 DDFTAMDDLHIFGFDDDDDDEPSGLPDCDFNDFGNVDLSCWVDEALN 188
           +DF + D+  I G  DD   EPSGLP  DF DFGN D+SCW+D+++N
Sbjct: 263 EDFASFDNTQILGLADD---EPSGLPSWDFEDFGNDDISCWLDDSIN 305

BLAST of Cp4.1LG01g17900 vs. TrEMBL
Match: A0A151RPL6_CAJCA (Ethylene-responsive transcription factor ERF118 family OS=Cajanus cajan GN=KK1_033995 PE=4 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 1.0e-08
Identity = 46/123 (37.40%), Postives = 63/123 (51.22%), Query Frame = 1

Query: 76  ESDSVVSQTSPAADIVE-METSSFVSIKEEELQMPELGFVG----------EGLETNLGL 135
           +S+S +S    A  + E   T+S      E L++P+L  +            G E N  L
Sbjct: 178 KSNSTISSVVAAVSVSEKFSTTSTSEDSSERLEIPDLSLLNLPPPPAAGGPSGSEPNFAL 237

Query: 136 VPELDPFFMDDIGQFLDDFTAMDDLHIFGFDDDDDDEPSGLPDCDFNDFGNVDLSCWVDE 188
             + D    DD GQ  DD   ++DLHIFGF   DD+EPS LPD DF DFG  + + W++E
Sbjct: 238 --DFDLLSFDDYGQGFDDLGDLEDLHIFGF---DDNEPSELPDFDFGDFGADEFAGWIEE 295

BLAST of Cp4.1LG01g17900 vs. TAIR10
Match: AT1G68550.1 (AT1G68550.1 Integrase-type DNA-binding superfamily protein)

HSP 1 Score: 48.1 bits (113), Expect = 7.1e-06
Identity = 30/80 (37.50%), Postives = 43/80 (53.75%), Query Frame = 1

Query: 13  SRPEEPKMTRKIRVICDDPDATDLSSSEDEGEIETRSLKFKRIIGEIHLPCF-----PYQ 72
           S P+E +  RK+R+I +DP ATD SSS++E     +  K KRI+ EI+ P       P +
Sbjct: 28  SLPQETQPLRKVRIIVNDPYATDDSSSDEEELKVPKPRKMKRIVREINFPSMEVSEQPSE 87

Query: 73  SKSIDIEEESDSVVSQTSPA 88
           S S D  +    +    SPA
Sbjct: 88  SSSQDSTKTDGKIAVSASPA 107

BLAST of Cp4.1LG01g17900 vs. NCBI nr
Match: gi|449446199|ref|XP_004140859.1| (PREDICTED: ethylene-responsive transcription factor ERF118 [Cucumis sativus])

HSP 1 Score: 168.3 bits (425), Expect = 1.3e-38
Identity = 93/131 (70.99%), Postives = 104/131 (79.39%), Query Frame = 1

Query: 68  SKSIDIEEESDSVVSQTSPAADIVEMETSSFVSIKEEE-----------LQMPELGFVGE 127
           S S + EEESDSVVSQTSPAA I+EMETSS V IKE+E           LQ+P+LGFV E
Sbjct: 188 SSSEENEEESDSVVSQTSPAAAILEMETSSSVLIKEDEEEMIDTNLINELQVPDLGFVDE 247

Query: 128 GLETNLGLVPELDPFFMDDIGQFLDDFTAMDDLHIFGFDDDDDDEPSGLPDCDFNDFGNV 187
           G+E NLGL PELDPFFMDDIGQFLDDF+AMDD+ I+GF   DDD PS LPDCDF+DFGN 
Sbjct: 248 GMEINLGL-PELDPFFMDDIGQFLDDFSAMDDIQIYGF---DDDVPSCLPDCDFDDFGND 307

BLAST of Cp4.1LG01g17900 vs. NCBI nr
Match: gi|659089721|ref|XP_008445662.1| (PREDICTED: ethylene-responsive transcription factor ERF118 [Cucumis melo])

HSP 1 Score: 162.2 bits (409), Expect = 9.6e-37
Identity = 90/131 (68.70%), Postives = 101/131 (77.10%), Query Frame = 1

Query: 68  SKSIDIEEESDSVVSQTSPAADIVEMETSSFVSIKEEE-----------LQMPELGFVGE 127
           S S + EEESDSVVSQT PAA I+EMETSS   IKE+E           LQ+P+LGFV E
Sbjct: 189 SSSEENEEESDSVVSQTFPAAAIIEMETSSSALIKEDEEEVIDTNLINELQVPDLGFVDE 248

Query: 128 GLETNLGLVPELDPFFMDDIGQFLDDFTAMDDLHIFGFDDDDDDEPSGLPDCDFNDFGNV 187
           G+E NLGL PELD FFMDDIGQFLDDF+AMDD+ I+GF   DDD PS LPDCDF+DFGN 
Sbjct: 249 GMEINLGL-PELDQFFMDDIGQFLDDFSAMDDIQIYGF---DDDVPSCLPDCDFDDFGND 308

BLAST of Cp4.1LG01g17900 vs. NCBI nr
Match: gi|658062238|ref|XP_008367011.1| (PREDICTED: ethylene-responsive transcription factor ERF118-like [Malus domestica])

HSP 1 Score: 101.7 bits (252), Expect = 1.5e-18
Identity = 57/133 (42.86%), Postives = 85/133 (63.91%), Query Frame = 1

Query: 75  EESDSVVSQTSPAADIVEMETSSFVSIKE---------------EELQMPELGFVGEGL- 134
           E+SDSVVSQ+SP+  ++++ETS+  +I+                EELQ+P+LGF+ E L 
Sbjct: 189 EDSDSVVSQSSPSC-VLDLETSASNNIRNGADLEKEIADESTNLEELQIPDLGFLDETLG 248

Query: 135 ----ETNLGLVPELDPFFMDDIGQFLDDFTAMDDLHIFGFDDDDDDEPSGLPDCDFNDFG 188
               +  L L PELD  +++D GQ  D++++++D+ I GF+    DEPS LPDCDF D G
Sbjct: 249 PLHFDQELNLGPELDSLYLEDFGQLFDNYSSIEDIQIPGFES---DEPSSLPDCDFEDLG 308

BLAST of Cp4.1LG01g17900 vs. NCBI nr
Match: gi|657993989|ref|XP_008389293.1| (PREDICTED: ethylene-responsive transcription factor ERF118 [Malus domestica])

HSP 1 Score: 99.0 bits (245), Expect = 1.0e-17
Identity = 56/133 (42.11%), Postives = 84/133 (63.16%), Query Frame = 1

Query: 75  EESDSVVSQTSPAADIVEMETSSFVSIKE---------------EELQMPELGFVGEGL- 134
           E+SDSVVSQ+SP+  ++++ETS+  +I+                EELQ+P+LG + E L 
Sbjct: 189 EDSDSVVSQSSPSC-VLDLETSASNNIRNGADLEKEIADESTNLEELQIPDLGXLDETLG 248

Query: 135 ----ETNLGLVPELDPFFMDDIGQFLDDFTAMDDLHIFGFDDDDDDEPSGLPDCDFNDFG 188
               +  L L PELD  +++D GQ  D++++++D+ I GF+    DEPS LPDCDF D G
Sbjct: 249 PLHFDXELNLGPELDSLYLEDFGQLFDNYSSIEDIQIPGFES---DEPSSLPDCDFEDLG 308

BLAST of Cp4.1LG01g17900 vs. NCBI nr
Match: gi|694331182|ref|XP_009356272.1| (PREDICTED: ethylene-responsive transcription factor ERF118-like [Pyrus x bretschneideri])

HSP 1 Score: 96.7 bits (239), Expect = 4.9e-17
Identity = 57/133 (42.86%), Postives = 83/133 (62.41%), Query Frame = 1

Query: 75  EESDSVVSQTSPAADIVEMETSSFVSIKE---------------EELQMPELGFVGEGLE 134
           E+SDSVVSQ SP+  ++++ETS+  +I+                EELQ+P+LGF+ E L+
Sbjct: 189 EDSDSVVSQRSPSC-VLDLETSASNNIQNGADLEKETADESTNLEELQIPDLGFLDETLD 248

Query: 135 T-----NLGLVPELDPFFMDDIGQFLDDFTAMDDLHIFGFDDDDDDEPSGLPDCDFNDFG 188
                  L L PELD   ++D GQF D++++++D+ I GF+    DEPS LPDCDF D G
Sbjct: 249 PLHFDQELNLGPELDSLCLEDFGQFFDNYSSIEDIQIPGFES---DEPSSLPDCDFEDLG 308

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0K880_CUCSA9.3e-3970.99Uncharacterized protein OS=Cucumis sativus GN=Csa_6G039270 PE=4 SV=1[more]
W9RLP9_9ROSA5.5e-1551.09Ethylene-responsive transcription factor OS=Morus notabilis GN=L484_014665 PE=4 ... [more]
M5XED2_PRUPE3.7e-1136.09Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa008514mg PE=4 SV=1[more]
A0A0A0KWF1_CUCSA9.1e-1032.34Uncharacterized protein OS=Cucumis sativus GN=Csa_5G609620 PE=4 SV=1[more]
A0A151RPL6_CAJCA1.0e-0837.40Ethylene-responsive transcription factor ERF118 family OS=Cajanus cajan GN=KK1_0... [more]
Match NameE-valueIdentityDescription
AT1G68550.17.1e-0637.50 Integrase-type DNA-binding superfamily protein[more]
Match NameE-valueIdentityDescription
gi|449446199|ref|XP_004140859.1|1.3e-3870.99PREDICTED: ethylene-responsive transcription factor ERF118 [Cucumis sativus][more]
gi|659089721|ref|XP_008445662.1|9.6e-3768.70PREDICTED: ethylene-responsive transcription factor ERF118 [Cucumis melo][more]
gi|658062238|ref|XP_008367011.1|1.5e-1842.86PREDICTED: ethylene-responsive transcription factor ERF118-like [Malus domestica... [more]
gi|657993989|ref|XP_008389293.1|1.0e-1742.11PREDICTED: ethylene-responsive transcription factor ERF118 [Malus domestica][more]
gi|694331182|ref|XP_009356272.1|4.9e-1742.86PREDICTED: ethylene-responsive transcription factor ERF118-like [Pyrus x bretsch... [more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0006355 regulation of transcription, DNA-templated
cellular_component GO:0005575 cellular_component
cellular_component GO:0005634 nucleus
cellular_component GO:0005667 transcription factor complex
molecular_function GO:0003674 molecular_function
molecular_function GO:0003677 DNA binding
molecular_function GO:0003700 transcription factor activity, sequence-specific DNA binding

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG01g17900.1Cp4.1LG01g17900.1mRNA


The following gene(s) are paralogous to this gene:

None