Cp4.1LG01g17680 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG01g17680
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionTransmembrane Fragile-X-F-associated protein
LocationCp4.1LG01 : 13197792 .. 13200035 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTGGTGGAGACTAGAGTGTTGACATGGAGGAGGGTGTTCAAGTCTCTCCAGGCTTTGGCAGCCCATGGTTTTCTTTTGTCCTTCACGCTTACGCTTGCTCTCAAGCTCGACCATCTCGTCTCTTACTCTTGGTGGTTCGTACCTCTCTCAATTCCTTATTCAACTTTTCTGTTTCTTTTGCAGAATATTAGTGGAACCCATTTGTAATTTTGTGTAATTTGAACTTTTTTGGGTCTGAATTCTGAAGTTCCTTCATTATTTGGTGGTATGGAGAATGTAGAAATGAATTTGGAGGTGTTAGCCTGATATCTCGCTAGCATTTTGTTGTGTTTCTCTGCTCTTATCTTCTGCTAACAATTTCTGCCCTGCTTTGTTNTTGAGGCGCTACCTCATAAAATTCTCTCTTTGGTGGGGATAACATAGTGTATACTAGCCTTCTCTTGTCATCCTTGGGAGGTTAGTTGGTGAACCCTTCTTATAGGTCCATCAAGTCACACAAGGTCAGGGGAGTGACCCTCTTGTGTTTGTCAACTACTAAGATTACCCGTGTAATCCCATGTCTTCTCTCAAGACGAATTTATTGTGCAAGGTAATCCAATTGAACTGTCGGTCACACAACCCTAACCAACCTAGGCTTGGCTTGACAATACATCTTCACACCTGCGCAGAAACCTAGAATTCATCGCAATTTTTCAGATTCTTTCCATTTTTTTTTTTAATTTTCATATCTTTCTTGAAGTAACTCGAATCAACTTGGTTCTTTTACTAAAGTTTTATAAATTTTATCTATCTTTATAATTTTTTTTTTTGTAATTTATAAATACATACGGGAAGTGGGTCTGATTCAACTCAAGATCTCTTCACGAAACTTGTGTGAAACATCTCCAAGTACGACATGTGGAAAACTAAGAACCTAAATCCAATTGAGGATTTGAGAGAAAACCAAAATCAACCCTATGAAATATTACTTTATGTTCTCCATCGATTCTTCATGGATTTGAGTGATTCATAAGTCTAGAATTGTTCTCTTCTTGAACATCTCTTGAGAAGAAACTTTGATGAAATTCAGGCTCTAAACCGTCATTTAATCTAATTCTCTCTCAAAATCCTAACCCTTTTTATTTTTCTTTTTTACTCTTTCTTTTTATTTCTTCCCCTTTCATGGCATGCTTAGGGCACTCACGGACCCAATAAAGAAAGAGGGTTCAAAATGACATTTTTACCCCTGAATAGTCTTTGGGCGACTTTTTCGTAATTTTTCACCATTTTCTTTCATATTTTTTTCAGGTTATTGGGATTATTTTAAACATGTTTCCCTTTTAACTCATCTTAAAATTTTCGAAGGTAAATATCACTTTTAACCTATTTTTCGAACTCATATTTATTTAATATTAAAAGAAAAAACGAAATGAAACTTAGTTATTGAGTTTCGAAAAATAGATATTAATATAAAAAACCCAAACAGAAAATTACCATTTTCCCAAGTTTGGTGGGGTAATAAGTGAAAGTTAAAGAACTAAATAGCTAATTTTATTTTCTCCCTATTATTTTTTTACTTATTTATTATTGAGAATTTAAATTTGTGGACAAAAATTTTCGTGGTGGAAGTAGTTTGATTAATTAAAATAATTAAAATAATTAAAATGGATATTGATCGCAAAAAAAAGACCTAAAAGGGTATTTTGGGGACAAAGAAAACGAATAATTTTCAAAATTCAACGCTTACATTTAATTAAACGTCTTTTTCCTCCTTTCGCGTAAAAGCAAAGTGTTGAAATGAAACCGCTGGCGCTCGGGAATATTTGTTAACCCCACCTTCCACTGCCCCATTTCAATTTTTTTCTCAATTTCAGCGTTGAGGCCGAACTTTCTTAGAAAGAGAGGTGGAGGGGGTTGAGGAGAGGACTCCAGTTCTCTCTCTTTTGCTTAATCTTTTCTGAACAGACCAAATTCTTCTTTCTTTTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTGGGTATGGTGGTGGAGACTAGAGTGTTGACATGGAGGAGGGTGTTCAAGTCTCTCCAGGCTTTGGCAGCCCATGGTTTTCTTTTGTCCTTCACGCTTACGCTTGCTCTCAAGCTCGACCATCTCGTCTCTTACTCTTGGTGGTTCGTACCTCTCTCAATTCCTTATTCAACTTTTCTGTTTCTTTTGCAGAATATTAGTGGAACCCATTTGTAA

mRNA sequence

ATGGTGGTGGAGACTAGAGTGTTGACATGGAGGAGGGTGTTCAAGTCTCTCCAGGCTTTGGCAGCCCATGGTTTTCTTTTGTCCTTCACGCTTACGCTTGCTCTCAAGCTCGACCATCTCGTCTCTTACTCTTGGTGGTTCGTACCTCTCTCAATTCCTTATTCAACTTTTCTGTTTCTTTTGCAGAATATTAGTGGAACCCATTTAGTGTTGACATGGAGGAGGGTGTTCAAGTCTCTCCAGGCTTTGGCAGCCCATGGTTTTCTTTTGTCCTTCACGCTTACGCTTGCTCTCAAGCTCGACCATCTCGTCTCTTACTCTTGGTGGTTCGTACCTCTCTCAATTCCTTATTCAACTTTTCTGTTTCTTTTGCAGAATATTAGTGGAACCCATTTGTAA

Coding sequence (CDS)

ATGGTGGTGGAGACTAGAGTGTTGACATGGAGGAGGGTGTTCAAGTCTCTCCAGGCTTTGGCAGCCCATGGTTTTCTTTTGTCCTTCACGCTTACGCTTGCTCTCAAGCTCGACCATCTCGTCTCTTACTCTTGGTGGTTCGTACCTCTCTCAATTCCTTATTCAACTTTTCTGTTTCTTTTGCAGAATATTAGTGGAACCCATTTAGTGTTGACATGGAGGAGGGTGTTCAAGTCTCTCCAGGCTTTGGCAGCCCATGGTTTTCTTTTGTCCTTCACGCTTACGCTTGCTCTCAAGCTCGACCATCTCGTCTCTTACTCTTGGTGGTTCGTACCTCTCTCAATTCCTTATTCAACTTTTCTGTTTCTTTTGCAGAATATTAGTGGAACCCATTTGTAA

Protein sequence

MVVETRVLTWRRVFKSLQALAAHGFLLSFTLTLALKLDHLVSYSWWFVPLSIPYSTFLFLLQNISGTHLVLTWRRVFKSLQALAAHGFLLSFTLTLALKLDHLVSYSWWFVPLSIPYSTFLFLLQNISGTHL
Homology
[Close]
BLAST of Cp4.1LG01g17680 vs. TrEMBL
Match: A0A087HGR4_ARAAL (Uncharacterized protein OS=Arabis alpina GN=AALP_AA2G114300 PE=4 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 4.6e-10
Identity = 49/120 (40.83%), Postives = 73/120 (60.83%), Query Frame = 1 

Query: 1   MVVETRVLTWRRVFKSLQALAAHGFLLSFTLTLALKLDHLVSYSWWFV--PLSIPYSTFL 60
           M+V+ RV++WRR++KS QA++AHG L SFTL LALKLDHLVS+SWWF+  PL + ++   
Sbjct: 1   MLVQRRVMSWRRIWKSFQAVSAHGLLFSFTLLLALKLDHLVSHSWWFIFTPLWLFHAVIA 60

Query: 61  ---FLLQNISGTHLVLTWRRVFKSLQALAAHGFLLSFTLTLALKLD--HLVSYSWWFVPL 114
              F L   S  H      R +    ++ A   L++F + L + L+  ++V     F+PL
Sbjct: 61  RGRFSLPAPSMPH-----DRHWAPFHSVMATPLLVAFEILLCVHLEDKYVVDLKIVFLPL 115

[Close]
BLAST of Cp4.1LG01g17680 vs. TrEMBL
Match: V4KM49_EUTSA (Uncharacterized protein OS=Eutrema salsugineum GN=EUTSA_v10018496mg PE=4 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 1.0e-09
Identity = 44/115 (38.26%), Postives = 69/115 (60.00%), Query Frame = 1 

Query: 1   MVVETRVLTWRRVFKSLQALAAHGFLLSFTLTLALKLDHLVSYSWWFVPLSIPYSTFLFL 60
           M+V+ RV++WRRV+KS QA++AHG L SFTL LALKLDH+VS+SWWF+   + +   +  
Sbjct: 1   MLVQRRVMSWRRVWKSFQAVSAHGLLFSFTLLLALKLDHVVSHSWWFIFTPLWFFHAVIA 60

Query: 61  LQNISGTHLVLTWRRVFKSLQALAAHGFLLSFTLTLALKLD--HLVSYSWWFVPL 114
               S     +   R +    ++ A   L++F + L + L+  ++V     F+PL
Sbjct: 61  RGRFSLPAPSMPHDRHWAPFHSVMATPLLVAFEILLCVHLEDKYVVDLKIVFLPL 115

[Close]
BLAST of Cp4.1LG01g17680 vs. TrEMBL
Match: A0A0D2SGJ6_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_005G137800 PE=4 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 1.3e-09
Identity = 53/120 (44.17%), Postives = 69/120 (57.50%), Query Frame = 1 

Query: 1   MVVETRVLTWRRVFKSLQALAAHGFLLSFTLTLALKLDHLVSYSWW--FVPLSIPYSTFL 60
           +V   RV+TWRRV KSLQAL AH  L SFTL LALKL H +SYSWW  F PL + ++T  
Sbjct: 2   LVERRRVMTWRRVGKSLQALVAHALLFSFTLLLALKLHHALSYSWWVVFSPLWLFHATVA 61

Query: 61  ---FLLQNISGTHLVLTWRRVFKSLQALAAHGFLLSFTLTLALKLD--HLVSYSWWFVPL 114
              F L   S  H      R +    AL +   L++F L L ++LD  ++V+    F+PL
Sbjct: 62  RGRFSLPAPSMPH-----DRDWAPFHALISTPLLVAFELLLCIRLDSSYVVNLKIVFLPL 116

[Close]
BLAST of Cp4.1LG01g17680 vs. TrEMBL
Match: A0A0D2RL54_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_005G137800 PE=4 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 1.3e-09
Identity = 53/120 (44.17%), Postives = 69/120 (57.50%), Query Frame = 1 

Query: 1   MVVETRVLTWRRVFKSLQALAAHGFLLSFTLTLALKLDHLVSYSWW--FVPLSIPYSTFL 60
           +V   RV+TWRRV KSLQAL AH  L SFTL LALKL H +SYSWW  F PL + ++T  
Sbjct: 2   LVERRRVMTWRRVGKSLQALVAHALLFSFTLLLALKLHHALSYSWWVVFSPLWLFHATVA 61

Query: 61  ---FLLQNISGTHLVLTWRRVFKSLQALAAHGFLLSFTLTLALKLD--HLVSYSWWFVPL 114
              F L   S  H      R +    AL +   L++F L L ++LD  ++V+    F+PL
Sbjct: 62  RGRFSLPAPSMPH-----DRDWAPFHALISTPLLVAFELLLCIRLDSSYVVNLKIVFLPL 116

[Close]
BLAST of Cp4.1LG01g17680 vs. TrEMBL
Match: A0A0D2REQ6_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_005G137800 PE=4 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 1.3e-09
Identity = 53/120 (44.17%), Postives = 69/120 (57.50%), Query Frame = 1 

Query: 1   MVVETRVLTWRRVFKSLQALAAHGFLLSFTLTLALKLDHLVSYSWW--FVPLSIPYSTFL 60
           +V   RV+TWRRV KSLQAL AH  L SFTL LALKL H +SYSWW  F PL + ++T  
Sbjct: 2   LVERRRVMTWRRVGKSLQALVAHALLFSFTLLLALKLHHALSYSWWVVFSPLWLFHATVA 61

Query: 61  ---FLLQNISGTHLVLTWRRVFKSLQALAAHGFLLSFTLTLALKLD--HLVSYSWWFVPL 114
              F L   S  H      R +    AL +   L++F L L ++LD  ++V+    F+PL
Sbjct: 62  RGRFSLPAPSMPH-----DRDWAPFHALISTPLLVAFELLLCIRLDSSYVVNLKIVFLPL 116

[Close]
BLAST of Cp4.1LG01g17680 vs. TAIR10
Match: AT1G68820.1 (AT1G68820.1 Transmembrane Fragile-X-F-associated protein)

HSP 1 Score: 67.8 bits (164), Expect = 5.8e-12
Identity = 49/120 (40.83%), Postives = 71/120 (59.17%), Query Frame = 1 

Query: 1   MVVETRVLTWRRVFKSLQALAAHGFLLSFTLTLALKLDHLVSYSWWFV--PLSIPYSTFL 60
           M+V+ RV++WRRV+KS QA +AH  L SFTL LALKLDH+VS+SWWFV  PL + ++   
Sbjct: 1   MLVQRRVMSWRRVWKSFQAASAHCLLFSFTLLLALKLDHVVSHSWWFVFAPLWLFHAVIA 60

Query: 61  ---FLLQNISGTHLVLTWRRVFKSLQALAAHGFLLSFTLTLALKLD--HLVSYSWWFVPL 114
              F L   S  H      R +    ++ A   L++F + L + L+  ++V     F+PL
Sbjct: 61  RGRFSLPAPSMPH-----DRHWAPFHSVMATPLLVAFEILLCVHLEDKYVVDLKIVFLPL 115

[Close]
BLAST of Cp4.1LG01g17680 vs. TAIR10
Match: AT1G18470.1 (AT1G18470.1 Transmembrane Fragile-X-F-associated protein)

HSP 1 Score: 54.7 bits (130), Expect = 5.1e-08
Identity = 27/41 (65.85%), Postives = 30/41 (73.17%), Query Frame = 1 

Query: 71  LTWRRVFKSLQALAAHGFLLSFTLTLALKLDHLVSYSWWFV 112
           ++ RRV KS+QALAAH  L  FTL L LKLDH VS SWW V
Sbjct: 1   MSCRRVLKSIQALAAHSLLFCFTLLLVLKLDHTVSSSWWMV 41

[Close]
BLAST of Cp4.1LG01g17680 vs. TAIR10
Match: AT1G73950.1 (AT1G73950.1 Transmembrane Fragile-X-F-associated protein)

HSP 1 Score: 53.5 bits (127), Expect = 1.1e-07
Identity = 26/41 (63.41%), Postives = 30/41 (73.17%), Query Frame = 1 

Query: 75  RVFKSLQALAAHGFLLSFTLTLALKLDHLVSYSWWFVPLSI 116
           RV KS+QA  AH FL SFTL L LKLDH ++YSWW V L +
Sbjct: 5   RVLKSVQASVAHCFLFSFTLALVLKLDHSITYSWWVVCLPL 45

[Close]
BLAST of Cp4.1LG01g17680 vs. NCBI nr
Match: gi|731370640|ref|XP_010647974.1| (PREDICTED: uncharacterized protein LOC100249082 isoform X2 [Vitis vinifera])

HSP 1 Score: 76.3 bits (186), Expect = 4.6e-11
Identity = 53/118 (44.92%), Postives = 68/118 (57.63%), Query Frame = 1 

Query: 1   MVVETRVLTWRRVFKSLQALAAHGFLLSFTLTLALKLDHLVSYSWW--FVPLSIPYSTFL 60
           M+V+ RV++WRRV  SLQA AAHG LL+FTL L LKLDH VSYSWW  F PL + ++   
Sbjct: 1   MLVQRRVMSWRRVATSLQAPAAHGLLLTFTLLLVLKLDHAVSYSWWIIFAPLWLFHAVVA 60

Query: 61  ---FLLQNISGTHLVLTWRRVFKSLQALAAHGFLLSFTLTLALKLDHLVSYSWWFVPL 114
              F L   S  H      R +    A+ A   L++F L L + L H V+    F+PL
Sbjct: 61  RGRFSLPAPSMPH-----DRHWAPFHAVTATPLLVAFELLLCIYLQHTVNLKIVFLPL 113

[Close]
BLAST of Cp4.1LG01g17680 vs. NCBI nr
Match: gi|674248551|gb|KFK41316.1| (hypothetical protein AALP_AA2G114300 [Arabis alpina])

HSP 1 Score: 72.4 bits (176), Expect = 6.7e-10
Identity = 49/120 (40.83%), Postives = 73/120 (60.83%), Query Frame = 1 

Query: 1   MVVETRVLTWRRVFKSLQALAAHGFLLSFTLTLALKLDHLVSYSWWFV--PLSIPYSTFL 60
           M+V+ RV++WRR++KS QA++AHG L SFTL LALKLDHLVS+SWWF+  PL + ++   
Sbjct: 1   MLVQRRVMSWRRIWKSFQAVSAHGLLFSFTLLLALKLDHLVSHSWWFIFTPLWLFHAVIA 60

Query: 61  ---FLLQNISGTHLVLTWRRVFKSLQALAAHGFLLSFTLTLALKLD--HLVSYSWWFVPL 114
              F L   S  H      R +    ++ A   L++F + L + L+  ++V     F+PL
Sbjct: 61  RGRFSLPAPSMPH-----DRHWAPFHSVMATPLLVAFEILLCVHLEDKYVVDLKIVFLPL 115

[Close]
BLAST of Cp4.1LG01g17680 vs. NCBI nr
Match: gi|567124119|ref|XP_006391092.1| (hypothetical protein EUTSA_v10018496mg [Eutrema salsugineum])

HSP 1 Score: 71.2 bits (173), Expect = 1.5e-09
Identity = 44/115 (38.26%), Postives = 69/115 (60.00%), Query Frame = 1 

Query: 1   MVVETRVLTWRRVFKSLQALAAHGFLLSFTLTLALKLDHLVSYSWWFVPLSIPYSTFLFL 60
           M+V+ RV++WRRV+KS QA++AHG L SFTL LALKLDH+VS+SWWF+   + +   +  
Sbjct: 1   MLVQRRVMSWRRVWKSFQAVSAHGLLFSFTLLLALKLDHVVSHSWWFIFTPLWFFHAVIA 60

Query: 61  LQNISGTHLVLTWRRVFKSLQALAAHGFLLSFTLTLALKLD--HLVSYSWWFVPL 114
               S     +   R +    ++ A   L++F + L + L+  ++V     F+PL
Sbjct: 61  RGRFSLPAPSMPHDRHWAPFHSVMATPLLVAFEILLCVHLEDKYVVDLKIVFLPL 115

[Close]
BLAST of Cp4.1LG01g17680 vs. NCBI nr
Match: gi|225423871|ref|XP_002281391.1| (PREDICTED: uncharacterized protein LOC100249082 isoform X1 [Vitis vinifera])

HSP 1 Score: 70.9 bits (172), Expect = 1.9e-09
Identity = 54/132 (40.91%), Postives = 71/132 (53.79%), Query Frame = 1 

Query: 1   MVVETRVLTWRRVFKSLQALAAHGFLLSFTLTLALKLDHLVSYSWW--FVPLSIPYSTFL 60
           M+V+ RV++WRRV  SLQA AAHG LL+FTL L LKLDH VSYSWW  F PL + ++   
Sbjct: 1   MLVQRRVMSWRRVATSLQAPAAHGLLLTFTLLLVLKLDHAVSYSWWIIFAPLWLFHAVVA 60

Query: 61  ---FLLQNISGTHLVLTWRRVFKSLQALAAHGFLLSFTLTLALKLDHLVSYSWWFVPLSI 120
              F L   S  H      R +    A+ A   L++F L L + L H  + +   V L +
Sbjct: 61  RGRFSLPAPSMPH-----DRHWAPFHAVTATPLLVAFELLLCIYLQHSYAVNLKIVFLPL 120

Query: 121 PYSTFLFLLQNI 128
                  L+ NI
Sbjct: 121 LALEAAILIDNI 127

[Close]
BLAST of Cp4.1LG01g17680 vs. NCBI nr
Match: gi|763763076|gb|KJB30330.1| (hypothetical protein B456_005G137800 [Gossypium raimondii])

HSP 1 Score: 70.9 bits (172), Expect = 1.9e-09
Identity = 53/120 (44.17%), Postives = 69/120 (57.50%), Query Frame = 1 

Query: 1   MVVETRVLTWRRVFKSLQALAAHGFLLSFTLTLALKLDHLVSYSWW--FVPLSIPYSTFL 60
           +V   RV+TWRRV KSLQAL AH  L SFTL LALKL H +SYSWW  F PL + ++T  
Sbjct: 2   LVERRRVMTWRRVGKSLQALVAHALLFSFTLLLALKLHHALSYSWWVVFSPLWLFHATVA 61

Query: 61  ---FLLQNISGTHLVLTWRRVFKSLQALAAHGFLLSFTLTLALKLD--HLVSYSWWFVPL 114
              F L   S  H      R +    AL +   L++F L L ++LD  ++V+    F+PL
Sbjct: 62  RGRFSLPAPSMPH-----DRDWAPFHALISTPLLVAFELLLCIRLDSSYVVNLKIVFLPL 116

The following BLAST results are available for this feature:
BLAST of Cp4.1LG01g17680 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG01g17680 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A087HGR4_ARAAL4.6e-1040.83Uncharacterized protein OS=Arabis alpina GN=AALP_AA2G114300 PE=4 SV=1[more]
V4KM49_EUTSA1.0e-0938.26Uncharacterized protein OS=Eutrema salsugineum GN=EUTSA_v10018496mg PE=4 SV=1[more]
A0A0D2SGJ6_GOSRA1.3e-0944.17Uncharacterized protein OS=Gossypium raimondii GN=B456_005G137800 PE=4 SV=1[more]
A0A0D2RL54_GOSRA1.3e-0944.17Uncharacterized protein OS=Gossypium raimondii GN=B456_005G137800 PE=4 SV=1[more]
A0A0D2REQ6_GOSRA1.3e-0944.17Uncharacterized protein OS=Gossypium raimondii GN=B456_005G137800 PE=4 SV=1[more]
BLAST of Cp4.1LG01g17680 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G68820.15.8e-1240.83 Transmembrane Fragile-X-F-associated protein[more]
AT1G18470.15.1e-0865.85 Transmembrane Fragile-X-F-associated protein[more]
AT1G73950.11.1e-0763.41 Transmembrane Fragile-X-F-associated protein[more]
BLAST of Cp4.1LG01g17680 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|731370640|ref|XP_010647974.1|4.6e-1144.92PREDICTED: uncharacterized protein LOC100249082 isoform X2 [Vitis vinifera][more]
gi|674248551|gb|KFK41316.1|6.7e-1040.83hypothetical protein AALP_AA2G114300 [Arabis alpina][more]
gi|567124119|ref|XP_006391092.1|1.5e-0938.26hypothetical protein EUTSA_v10018496mg [Eutrema salsugineum][more]
gi|225423871|ref|XP_002281391.1|1.9e-0940.91PREDICTED: uncharacterized protein LOC100249082 isoform X1 [Vitis vinifera][more]
gi|763763076|gb|KJB30330.1|1.9e-0944.17hypothetical protein B456_005G137800 [Gossypium raimondii][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0008270 zinc ion binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG01g17680.1Cp4.1LG01g17680.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR10044INHIBITOR OF APOPTOSIScoord: 1..50
score: 2.4
NoneNo IPR availablePANTHERPTHR10044:SF122SUBFAMILY NOT NAMEDcoord: 1..50
score: 2.4

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG01g17680Melon (DHL92) v3.6.1cpemedB448
Cp4.1LG01g17680Silver-seed gourdcarcpeB1450
Cp4.1LG01g17680Cucumber (Chinese Long) v3cpecucB0535
Cp4.1LG01g17680Wax gourdcpewgoB0574
Cp4.1LG01g17680Cucurbita pepo (Zucchini)cpecpeB037
Cp4.1LG01g17680Cucumber (Gy14) v1cgycpeB0757
Cp4.1LG01g17680Cucurbita maxima (Rimu)cmacpeB436
Cp4.1LG01g17680Cucurbita maxima (Rimu)cmacpeB721
Cp4.1LG01g17680Cucurbita moschata (Rifu)cmocpeB400
Cp4.1LG01g17680Cucurbita moschata (Rifu)cmocpeB673
Cp4.1LG01g17680Cucurbita moschata (Rifu)cmocpeB680
Cp4.1LG01g17680Cucurbita moschata (Rifu)cmocpeB682
Cp4.1LG01g17680Cucurbita moschata (Rifu)cmocpeB685
Cp4.1LG01g17680Wild cucumber (PI 183967)cpecpiB429
Cp4.1LG01g17680Cucumber (Chinese Long) v2cpecuB434
Cp4.1LG01g17680Bottle gourd (USVL1VR-Ls)cpelsiB313
Cp4.1LG01g17680Watermelon (Charleston Gray)cpewcgB400
Cp4.1LG01g17680Watermelon (97103) v1cpewmB439
Cp4.1LG01g17680Melon (DHL92) v3.5.1cpemeB387
Cp4.1LG01g17680Cucumber (Gy14) v2cgybcpeB640