Cp4.1LG01g17540 (gene) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG01g17540
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	Pentatricopeptide repeat-containing protein
Location	Cp4.1LG01 : 13592108 .. 13598043 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTTTGATTCAACGCAAACATCACATTTGTGTGTTATGACCGTCAAAAATGGAGAGCAGTAGTCCTAATCTGAAGATTCTATGCCGAGAACAGCAGTGGGTTTCGTGAATCTTGTTGACCGAAGTGGCCGAAGAATCGTAAGTGATTTCCGTTCCTTTTAAATTCTCTCTTCTTAATCAAACGAACAATCTTTGGTTGAAACTCGTAGTGATTAATGTAGGAGTACGAGTTATGAGTTGTAAATTACTTCCCCTTCCAACCTCTCTGAACAGCCTTATCAATTCAGGGCGGACCTTGAAACATGCCACTCAAATTCATTCCCATCTCATCACCACTGCCTTCCTTTCCCTCCCTTTCCTCTTCAATAACCTCCTCAACTTGTACGCCAAATCTGGTTCTCTCGACCAAACCTTGTTGTTCTTCTCCTCAACCCCACATGACTCCAAGAACGTTGTCTCTTGGACTTCTCTTATCACCCAATTTTCCCGTTCTAAAAGACCCTTTCACGCCTTGGCTTTCTTTAACCATATGAGGTGTTCTGGGGTTTATCCCAATCACTACACCTTCTCTGCTGTCTTATCTGCTTGCACTGACACTATGGCTTCTGTTCATGGGGATCAGATGCATTCTTTGATTTGGAAACACGGGTTCCATGCTGACGTCTTTGTTGCCAGTGCGTTACTTGACATGTATGCCAAGTGTTGTGATATGTGCAGGGCCGAGAAGGTGTTCGAGGAAATGCCCCTGAGAAACCTAGTGTCTTGGAACTCTATGATTGTGGGATTCTTGCAGAACAAGCTATATGATCGGGCCATTCTCTTCTTTAAGACGCTTCTACTCGAGAGTCTAACTGCTGTTGATGAGGTAAGCTTTTCTAGTGCTTTGAGTGCTTGTGCCAATGTTGGTAACTGGGAGTTTGGGAAACAAGTTCATGGAGTTGCTCTCAAGCTTGGTGTCAGGAATTTGGTTTATGTAAATAACTCGCTGATTGACATGTATAGTAAGTGTGGCTTGTTTGACGACGTTGTGAAGTTGTTTTCAAACATTGGAGCTAGAGATGTTGTTACTTGGAACATTATGATCATGGCATGCGTTTATAATAACAATTATGAAGATGCCTGCAATAATTTTTGGATGATGAGGAGGGAAGGTTTAATACCTGATGAAGCGTCATACTCCTCTGTTCTTCATTCTTGTGCAAATCTTGCAGCATTATATCAGGGAGCACTCATCCATAATCAGATCATAAAATCTGGATTCGTGAAGAATTTGTGTGTTGCAAGCTCTTTGGTCACGATGTATGCAAAGTGCGGCAGCTTGGTAGATGCTTTTCAGATATTTGAAGAGACTGTGGACCGTAATGTGGTTTGTTGGACAGCCATAATTGCAGCTTGTCAACAACACGGTCATGCTAACCAGGTCGTTCAGTTATTCGAGCAAATGTTGAGAGAGGGGATTAAACCTGACTATATTACTTTTGTTTCTGTTCTCTCTGCTTGCAGCCACACTGGTCGGGTTGAAGAAGGGTTCTTCTACTTTAATTCAATGACTAAAGTGCATGGTATTTACCCTGGATATGAGCATTATGCGTGTATAGTCGACTTGCTTGGCCGTGCTGGGCAGTTGGATAGAGCTAAGAGGTTTATAGAACTGATGCCTATCAAACCAGACGCCTCTGTATGGGGTGCTCTGCTTAGTGCTTGCAGGAATCATAGCAACCTTGAAATGGGCAAGGAAGTGGCTCAGGAACTTTTTGAATTGGAACCAGATAATCCTGGAAATTATGTGCTGCTTTGTAACATCTTGACACGTAATGGGATGTTACGCGAGGCCGACGAGGTTAGAAGAAAGATGGAAGCCATTGGAGTGAGGAAGGAACCAGGATGCAGCTGGATTGACATAAAGAATTCAACATATGTGTTCACAGTGCATGATAAGTCGCATGAGAAAACGCAGGAGATTTACGAGATGTTGGAGAAGGTAAAGGAGTTAGTAAAGAAGAAAGGGTATGTGGCTGAAACTGAATTTGCAATAAACATGGCAGAAGCATACAAGGAGCAGAGTTTGTGGTACCATAGCGAGAAACTAGCTCTTGCACTTGGGCTGCTCAGCCTTCCCGCCGGTGCTCCAATTAGGATAAAAAAGAACTTAAGAACTTGTGGAGACTGTCATACCGTAATGAAGTTTGCATCAGAAGTTTTTGGGCGAGAGATTATAGTAAGAGACATAAGCAGATTTCATCATTTCACCAATGGCATTTGTTCTTGTGGAGATTACTGGTGATTGATTGGAGGTTGATGATCCGGTGGATCACCCTTAGGAGCCCATTGAGCTAAAACTAGCTCATGAAACACCAGTACAACAAATATAACTTTTGAAGTACGGTCTAGAGTTGCAAGATTAATTTAGTTAGAGTTGGTAATATGGATCATCAAGTTTTTGTTCATCTTGATTTGTTCTTCTATTCATCATTGTTACGTTTCAATTGAGGCAACTGTGATTTATCTGATATCATAATGCTTGCAGTGTGAACGCAGGGATACAAATTGGACACTGTTGAATACTCAAATGTGTTCCCCATCAGAAATTCACTGCAGCAAGGCAATTTAAACACAATGGGGAGCTAACTTTCAACATTTGATTAGGTATTATACCTTCCACCTTCAATACTACACCTTCATGTATGCTAACTCATGAAACATTGAGTTTGTCCCTTAATCTACAAGTCATCAAAGATTATCATCAACTATAAGTGCTCACATAGCCCTTGTGTAATAGCTTGAAACTCCACATTTTATATTTTATATTTTATATTTTATATTTTTTACTTCATCATATCACTAAATTACCTCTAAGATGAGTATATACCTTGTCGTAGATCTTTATCTACTATTAATCCAACATAGTCAATGTCCGTGTAAGCTTCCAATGCAAGGGGATGGTTTTTGTTTAAATAAGGCTCCTTTTCCTGAAGTCTCTTGCAAGTAATGTAATACTCTATATGTTGTCTGAAGATGACATCTTCGGTAATGCATAAATTGACTAATTACACTTACGGAGTATGCTATGTCATGTCGAATGTGAGTTAGATATACAAGTCTCCCCAATAGCCTCTAGTAAAACTCTGTTCATTGTAAGTTCTTTTGACACTCCCCATCTTTGATGTGGATCCATTTCCATTGCATGATAAGATAAGGAATCACTACAAGGGGAGTAAGATTTGGATTACCTTGTTGATCGAAGATCTTAAGGCAAGAACACTTGTTTGAGATTCGAATCACTCCACAAGCAAGATCGATCATGTCTAGCTTGAATGATTCTTGTTGATCAAATATCTCAGCGCAAGACCACTTGTTTGAGATTCGAATCACTCCACAAGCAAGATTGATCATGTCGAGCTTGAATGATTCTACATGCAACCTAAACTACATAGAATTGCAAAGAAACTTAGCCATTGGCTAAAGAAAAGCACAAATGCTTCTTTTACTACATTTTCCAACTACCTTACAAATACAACATACATGGCTTTATATAGTCTCAAAATGAAACTATTAAAGACATTCCAAGAGTTGTAACATTCATACGTAATGACCATAATTAACCATTATGTAATTGTAACCTAAAGTAAATAAAAACTCTTAAACTACGTTAATGAAATACAATAACTCTAAATTGTAATCCACCCAAAATTTATCATATGAAACTTTATTCTTCTTCAATGTGGCATGAATTGAAATATCTTTTGATAATTTCAACAATATTTTCTTCACATCTTCATTGAAGCATATTGTATGATTTATGTCTCATTCTGCTTTTTCTTATTTCCATTCATAAATTTGTTACTTATTTCTATTGTGATATGCAAATGTCCTAAGTTGAGTATGCATCTTCCTTGTTGAGAAAGTACTTTAGCCTTCTAGGTTATTTGATCTCAAATTCTCTCATTAATTTCCTTCTAAGTTCAATCTTTTCTTCTTTATTATCTCCCGTAACTATGATATCATCTACATACACTAGAAGTATTGTAACTCTTCTTGGTTTTGAGTGCTTGATAGATAGAGTAATCTCCTTAACTCTACATATACTCATCGTCTTTCATTACCTTCGTGAATCTTCATAACCACACACTTAGGTGATTGTTTTAATTCATACCGGACTTAGACTGCACACTTTACCTCTTGAGCTTGTTAGGATCGCACAACAACGCACACACTCGATCTAGATGAACACAAAAAATAGGATAGAGAAAATGCAAGGAGAATATTGGCTAAAGGTTTATATTGATGACTTCAGACATGTAGAGTAAGAGTGTAACGCCTCAAATCCACAGCTAGCCGATATTGTTCTCTTTGGGCTGCCCCTCAAGGCTTTAAAACGCGTATGCTAGGGGAAGGTTTCCACACAGTTGGGGAGGAGAACAAACCACCCTTTGGGGTCCAGCGTCCTCGCTGGCATCTTTCCTTCCTCCAATCGATGTGGGACCGCCCCCAAATCCACCCCTCTCTGGGGCCCAGCGTCCTTACTGGCACACCGCCTCTTCGGGGAACAGCGAGAAGGCTGACACATCGTCTGGTGTCTGGCTCTGATACCATTTGTAACGTCCCAAATCCACCGCTAGTAGATATTATCCTCTTTGAGCTTTCCCTTTCGGGCTTTCCCTCAAGGCTTTAAAACGTGTCGGGCTTTCCCTCAAGGCTTTAAAACGTGTCGGGCTTTCCCTCAAGGCTTTAAAACGTGTCGGGCTTTCCCTCAAGGCTTTAAAACGTGTCTGCTAGGGGAAGGTTTTCACACCCTTATAAAGGGTGGTTTGTTCTCCTTCCTCCAATAGAGTGCCAGAGAGGACGCTGGGGTCCGAAGGGGGGTGGATTGTGATGTCCCACATTGGTTGGGAAGGAGAACAAACCACCATTTATAAGGGTGTGGAAACCTTCCCCTAGCAGACGCGTTTTAAAGCCTTGAGTGGAAGCCCGAAAGGGAAAACCCAAAGAGGACAATATCTGTTAGCGGTGGATCTGGGTCGTTACAAAGAGAGAATACAGAGAATACCTAAAGTACATTTAGGGATATATATGGGTTTAGCTTACTATATATAACTTTACTAAATATAACCATCTACCTATATAATTATTTACCATATATAGCTTTACCTTTTTGCTATTTACTATTTATGGCAATTTACTATATATCATTTACCAAATATAGTTTTACTATGTATTATCGACTAAGCTATAAATAAGCAGCAGACTCCATAGCTTACAAATCCTAAAGGAATGCACTCATAGCTTTCCTCGTCTAGATCACTGCAAAAGAACACATTCTTACATGTGTAAGAGCTGCCAATTTAAGTTGGCAACTAAAGATAGCAATATACTTGTAGTGTTCATCTTTGTTACTAAGGCAAATGTCTCCCAGTAACTATGTCGTCAAGTTTGAATAGATCCCTTAGCTACTAACCTTACATTAAGAGAGGCAAGGTTATTCAGTGTGTCCAAAGGGAGGCTTTAGTGAGAACAATTTACACTCGGTGAATGTCACATCAATTGAGATGTAAGACTTCCTATATTTAAGATTGTAACATTTCGTACCCCTTTTTGGTAGAAGAATATCCTAAAAAGACACATTTTATTGCTCTTTGAGTGTTGTTCAAGGCTAGGCACCAGAACATGGGGGTGTGAGGTCATTTGATATTAGAAAGTGAAGATAAAATTGGTTGCACACTTTTACTTGGAAAGATGCACTAATACCATCTTTTACTTCGATGACCTTCTTTCCTTGTTTCTTGTCTTCTTCAGTACCCAATTTTCAATCATTGGGTTCTTGACCTCTTCTTGACTGTACACCAACACCTGTCACAGAACAAGAATAGCATGCTCTTTCACACACACAGAGGTGTAATAATGAAAACTAAGAAGCGCCTGAAGAAACTTAAGTAG

mRNA sequence

ATGGATTCTATGCCGAGAACAGCAGTGGGTTTCGTGAATCTTGTTGACCGAAGTGGCCGAAGAATCGTAAGAGTACGAGTTATGAGTTGTAAATTACTTCCCCTTCCAACCTCTCTGAACAGCCTTATCAATTCAGGGCGGACCTTGAAACATGCCACTCAAATTCATTCCCATCTCATCACCACTGCCTTCCTTTCCCTCCCTTTCCTCTTCAATAACCTCCTCAACTTGTACGCCAAATCTGGTTCTCTCGACCAAACCTTGTTGTTCTTCTCCTCAACCCCACATGACTCCAAGAACGTTGTCTCTTGGACTTCTCTTATCACCCAATTTTCCCGTTCTAAAAGACCCTTTCACGCCTTGGCTTTCTTTAACCATATGAGTGCTTTGAGTGCTTGTGCCAATGTTGGTAACTGGGAGTTTGGGAAACAAGTTCATGGAGTTGCTCTCAAGCTTGGTGTCAGGAATTTGGTTTATGTAAATAACTCGCTGATTGACATGTATAGTAAGTGTGGCTTGTTTGACGACGTTGTGAAGTTGTTTTCAAACATTGGAGCTAGAGATGTTGTTACTTGGAACATTATGATCATGGCATGCGTTTATAATAACAATTATGAAGATGCCTGCAATAATTTTTGGATGATGAGGAGGGAAGGTTTAATACCTGATGAAGCGTCATACTCCTCTTACCCAATTTTCAATCATTGGGTTCTTGACCTCTTCTTGACTGTACACCAACACCTGTCACAGAACAAGAATAGCATGCTCTTTCACACACACAGAGGTGTAATAATGAAAACTAAGAAGCGCCTGAAGAAACTTAAGTAG

Coding sequence (CDS)

ATGGATTCTATGCCGAGAACAGCAGTGGGTTTCGTGAATCTTGTTGACCGAAGTGGCCGAAGAATCGTAAGAGTACGAGTTATGAGTTGTAAATTACTTCCCCTTCCAACCTCTCTGAACAGCCTTATCAATTCAGGGCGGACCTTGAAACATGCCACTCAAATTCATTCCCATCTCATCACCACTGCCTTCCTTTCCCTCCCTTTCCTCTTCAATAACCTCCTCAACTTGTACGCCAAATCTGGTTCTCTCGACCAAACCTTGTTGTTCTTCTCCTCAACCCCACATGACTCCAAGAACGTTGTCTCTTGGACTTCTCTTATCACCCAATTTTCCCGTTCTAAAAGACCCTTTCACGCCTTGGCTTTCTTTAACCATATGAGTGCTTTGAGTGCTTGTGCCAATGTTGGTAACTGGGAGTTTGGGAAACAAGTTCATGGAGTTGCTCTCAAGCTTGGTGTCAGGAATTTGGTTTATGTAAATAACTCGCTGATTGACATGTATAGTAAGTGTGGCTTGTTTGACGACGTTGTGAAGTTGTTTTCAAACATTGGAGCTAGAGATGTTGTTACTTGGAACATTATGATCATGGCATGCGTTTATAATAACAATTATGAAGATGCCTGCAATAATTTTTGGATGATGAGGAGGGAAGGTTTAATACCTGATGAAGCGTCATACTCCTCTTACCCAATTTTCAATCATTGGGTTCTTGACCTCTTCTTGACTGTACACCAACACCTGTCACAGAACAAGAATAGCATGCTCTTTCACACACACAGAGGTGTAATAATGAAAACTAAGAAGCGCCTGAAGAAACTTAAGTAG

Protein sequence

MDSMPRTAVGFVNLVDRSGRRIVRVRVMSCKLLPLPTSLNSLINSGRTLKHATQIHSHLITTAFLSLPFLFNNLLNLYAKSGSLDQTLLFFSSTPHDSKNVVSWTSLITQFSRSKRPFHALAFFNHMSALSACANVGNWEFGKQVHGVALKLGVRNLVYVNNSLIDMYSKCGLFDDVVKLFSNIGARDVVTWNIMIMACVYNNNYEDACNNFWMMRREGLIPDEASYSSYPIFNHWVLDLFLTVHQHLSQNKNSMLFHTHRGVIMKTKKRLKKLK

Homology

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BLAST of Cp4.1LG01g17540 vs. Swiss-Prot
Match: PPR32_ARATH (Pentatricopeptide repeat-containing protein At1g11290, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H40 PE=2 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 3.2e-22
Identity = 65/200 (32.50%), Postives = 103/200 (51.50%), Query Frame = 1


Query: 43  INSGRTLKHATQIHSHLITTAFLSLPFLFNNLLNLYAKSGSLDQTLLFFSSTPHDSKNVV 102
           +++ R +    +IH + + + F SL  +   L+++YAK GSL+     F       +NVV
Sbjct: 246 VSALRLISVGKEIHGYAMRSGFDSLVNISTALVDMYAKCGSLETARQLFDGMLE--RNVV 305

Query: 103 SWTSLITQFSRSKRPFHALAFFNHM-------------SALSACANVGNWEFGKQVHGVA 162
           SW S+I  + +++ P  A+  F  M              AL ACA++G+ E G+ +H ++
Sbjct: 306 SWNSMIDAYVQNENPKEAMLIFQKMLDEGVKPTDVSVMGALHACADLGDLERGRFIHKLS 365

Query: 163 LKLGVRNLVYVNNSLIDMYSKCGLFDDVVKLFSNIGARDVVTWNIMIMACVYNNNYEDAC 222
           ++LG+   V V NSLI MY KC   D    +F  + +R +V+WN MI+    N    DA 
Sbjct: 366 VELGLDRNVSVVNSLISMYCKCKEVDTAASMFGKLQSRTLVSWNAMILGFAQNGRPIDAL 425

Query: 223 NNFWMMRREGLIPDEASYSS 230
           N F  MR   + PD  +Y S
Sbjct: 426 NYFSQMRSRTVKPDTFTYVS 443

[Close]

BLAST of Cp4.1LG01g17540 vs. Swiss-Prot
Match: PP252_ARATH (Pentatricopeptide repeat-containing protein At3g24000, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H87 PE=3 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 5.4e-22
Identity = 63/188 (33.51%), Postives = 99/188 (52.66%), Query Frame = 1


Query: 55  IHSHLITTAFLSLPFLFNNLLNLYAKSGSLDQTLLFFSSTPHDSKNVVSWTSLITQFSRS 114
           +H+H++ + F     + N LLN+YAK GSL++    F   P   ++ V+WT+LI+ +S+ 
Sbjct: 82  VHAHILQSIFRHDIVMGNTLLNMYAKCGSLEEARKVFEKMPQ--RDFVTWTTLISGYSQH 141

Query: 115 KRPFHALAFFNHM-------------SALSACANVGNWEFGKQVHGVALKLGVRNLVYVN 174
            RP  AL FFN M             S + A A       G Q+HG  +K G  + V+V 
Sbjct: 142 DRPCDALLFFNQMLRFGYSPNEFTLSSVIKAAAAERRGCCGHQLHGFCVKCGFDSNVHVG 201

Query: 175 NSLIDMYSKCGLFDDVVKLFSNIGARDVVTWNIMIMACVYNNNYEDACNNFWMMRREGLI 230
           ++L+D+Y++ GL DD   +F  + +R+ V+WN +I      +  E A   F  M R+G  
Sbjct: 202 SALLDLYTRYGLMDDAQLVFDALESRNDVSWNALIAGHARRSGTEKALELFQGMLRDGFR 261

[Close]

BLAST of Cp4.1LG01g17540 vs. Swiss-Prot
Match: PP330_ARATH (Pentatricopeptide repeat-containing protein At4g21065 OS=Arabidopsis thaliana GN=PCMP-H28 PE=2 SV=2)

HSP 1 Score: 100.5 bits (249), Expect = 3.0e-20
Identity = 60/187 (32.09%), Postives = 101/187 (54.01%), Query Frame = 1


Query: 55  IHSHLITTAFLSLPFLFNNLLNLYAKSGSLDQTLLFFSSTPHDSKNVVSWTSLITQFSRS 114
           IHS +I + F SL ++ N+LL+LYA  G +      F   P   K++V+W S+I  F+ +
Sbjct: 143 IHSVVIRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPE--KDLVAWNSVINGFAEN 202

Query: 115 KRPFHALAFFNHM-------------SALSACANVGNWEFGKQVHGVALKLGVRNLVYVN 174
            +P  ALA +  M             S LSACA +G    GK+VH   +K+G+   ++ +
Sbjct: 203 GKPEEALALYTEMNSKGIKPDGFTIVSLLSACAKIGALTLGKRVHVYMIKVGLTRNLHSS 262

Query: 175 NSLIDMYSKCGLFDDVVKLFSNIGARDVVTWNIMIMACVYNNNYEDACNNF-WMMRREGL 228
           N L+D+Y++CG  ++   LF  +  ++ V+W  +I+    N   ++A   F +M   EGL
Sbjct: 263 NVLLDLYARCGRVEEAKTLFDEMVDKNSVSWTSLIVGLAVNGFGKEAIELFKYMESTEGL 322

[Close]

BLAST of Cp4.1LG01g17540 vs. Swiss-Prot
Match: PP353_ARATH (Pentatricopeptide repeat-containing protein At4g37170 OS=Arabidopsis thaliana GN=PCMP-H5 PE=3 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 3.9e-20
Identity = 53/194 (27.32%), Postives = 97/194 (50.00%), Query Frame = 1


Query: 47  RTLKHATQIHSHLITTAFLSLPFLFNNLLNLYAKSGSLDQTLLFFSSTPHDSKNVVSWTS 106
           + ++   +IH H++     S   L+++L+++Y K G +D+    F       K+VVSWTS
Sbjct: 232 KCIRRGKEIHGHIVRAGLDSDEVLWSSLMDMYGKCGCIDEARNIFDKIVE--KDVVSWTS 291

Query: 107 LITQFSRSKRPFHALAFFNHM-------------SALSACANVGNWEFGKQVHGVALKLG 166
           +I ++ +S R     + F+ +               L+ACA++   E GKQVHG   ++G
Sbjct: 292 MIDRYFKSSRWREGFSLFSELVGSCERPNEYTFAGVLNACADLTTEELGKQVHGYMTRVG 351

Query: 167 VRNLVYVNNSLIDMYSKCGLFDDVVKLFSNIGARDVVTWNIMIMACVYNNNYEDACNNFW 226
                + ++SL+DMY+KCG  +    +       D+V+W  +I  C  N   ++A   F 
Sbjct: 352 FDPYSFASSSLVDMYTKCGNIESAKHVVDGCPKPDLVSWTSLIGGCAQNGQPDEALKYFD 411

Query: 227 MMRREGLIPDEASY 228
           ++ + G  PD  ++
Sbjct: 412 LLLKSGTKPDHVTF 423

[Close]

BLAST of Cp4.1LG01g17540 vs. Swiss-Prot
Match: PPR8_ARATH (Pentatricopeptide repeat-containing protein At1g03540 OS=Arabidopsis thaliana GN=PCMP-E4 PE=2 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 5.1e-20
Identity = 59/190 (31.05%), Postives = 98/190 (51.58%), Query Frame = 1


Query: 47  RTLKHATQIHSHLITTAFLSLPFLFNNLLNLYAKSGSLDQTLLFFSSTPHDSKNVVSWTS 106
           R LK   +IH  LIT    S   + ++LL++Y K GS+ +    F+      KN VSW++
Sbjct: 279 RRLKQGKEIHGKLITNGIGSNVVVESSLLDMYGKCGSVREARQVFNGM--SKKNSVSWSA 338

Query: 107 LITQFSRSKRPFHALAFFNHM---------SALSACANVGNWEFGKQVHGVALKLGVRNL 166
           L+  + ++     A+  F  M         + L ACA +     GK++HG  ++ G    
Sbjct: 339 LLGGYCQNGEHEKAIEIFREMEEKDLYCFGTVLKACAGLAAVRLGKEIHGQYVRRGCFGN 398

Query: 167 VYVNNSLIDMYSKCGLFDDVVKLFSNIGARDVVTWNIMIMACVYNNNYEDACNNFWMMRR 226
           V V ++LID+Y K G  D   +++S +  R+++TWN M+ A   N   E+A + F  M +
Sbjct: 399 VIVESALIDLYGKSGCIDSASRVYSKMSIRNMITWNAMLSALAQNGRGEEAVSFFNDMVK 458

Query: 227 EGLIPDEASY 228
           +G+ PD  S+
Sbjct: 459 KGIKPDYISF 466

[Close]

BLAST of Cp4.1LG01g17540 vs. TrEMBL
Match: A0A0A0LVV0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G560780 PE=4 SV=1)

HSP 1 Score: 183.3 bits (464), Expect = 3.9e-43
Identity = 88/110 (80.00%), Postives = 94/110 (85.45%), Query Frame = 1


Query: 120 ALAFFNHMSALSACANVGNWEFGKQVHGVALKLGVRNLVYVNNSLIDMYSKCGLFDDVVK 179
           AL   +  S  SACAN GN EFGKQVHGVALKLGV NLVY+NNSL DMY KCGLF+DV K
Sbjct: 185 ALDEVSFSSVFSACANAGNLEFGKQVHGVALKLGVWNLVYINNSLSDMYGKCGLFNDVAK 244

Query: 180 LFSNIGARDVVTWNIMIMACVYNNNYEDACNNFWMMRREGLIPDEASYSS 230
           LFSN GARDVVTWNIMIMA VYN+NYEDACN+FWMMRR+G IPDEASYSS
Sbjct: 245 LFSNTGARDVVTWNIMIMAYVYNHNYEDACNSFWMMRRKGSIPDEASYSS 294

[Close]

BLAST of Cp4.1LG01g17540 vs. TrEMBL
Match: A0A0S3S001_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.04G378000 PE=4 SV=1)

HSP 1 Score: 166.0 bits (419), Expect = 6.4e-38
Identity = 91/192 (47.40%), Postives = 115/192 (59.90%), Query Frame = 1


Query: 49  LKHATQIHSHLITTAFLSLPFLFNNLLNLYAKSGSLDQTLLFFSSTPHDSKNVVSWTSLI 108
           L    QIH+ L+  AF +  F+   LL++YA  GS+      F   PH  +N+VSW S+I
Sbjct: 143 LSQGQQIHALLLKHAFHTDTFVATALLHMYASCGSMSLAENVFDQMPH--RNLVSWNSMI 202

Query: 109 TQFSRSKRPFHALAFFNHM-----------SALSACANVGNWEFGKQVHGVALKLGVRNL 168
             F ++K    A+ FF  +           S LSACA +    FGKQVHG  +K G+  L
Sbjct: 203 VGFLKNKMYGRAIGFFREVLSLEPDQVSFSSVLSACAGLVELGFGKQVHGSIVKRGLVGL 262

Query: 169 VYVNNSLIDMYSKCGLFDDVVKLFSNIGARDVVTWNIMIMACVYNNNYEDACNNFWMMRR 228
           VYV NSL+DMY KCGLF+D  KLF   G RDVVTWN+MI  CV++ N+E AC  F  M R
Sbjct: 263 VYVKNSLVDMYCKCGLFEDATKLFCGGGERDVVTWNVMITGCVHSQNFEQACTFFQAMIR 322

Query: 229 EGLIPDEASYSS 230
           EG+ PDEASYSS
Sbjct: 323 EGVEPDEASYSS 332

[Close]

BLAST of Cp4.1LG01g17540 vs. TrEMBL
Match: A0A0L9U9B3_PHAAN (Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan03g269300 PE=4 SV=1)

HSP 1 Score: 166.0 bits (419), Expect = 6.4e-38
Identity = 91/192 (47.40%), Postives = 115/192 (59.90%), Query Frame = 1


Query: 49  LKHATQIHSHLITTAFLSLPFLFNNLLNLYAKSGSLDQTLLFFSSTPHDSKNVVSWTSLI 108
           L    QIH+ L+  AF +  F+   LL++YA  GS+      F   PH  +N+VSW S+I
Sbjct: 146 LSQGQQIHALLLKHAFHTDTFVATALLHMYASCGSMSLAENVFDQMPH--RNLVSWNSMI 205

Query: 109 TQFSRSKRPFHALAFFNHM-----------SALSACANVGNWEFGKQVHGVALKLGVRNL 168
             F ++K    A+ FF  +           S LSACA +    FGKQVHG  +K G+  L
Sbjct: 206 VGFLKNKMYGRAIGFFREVLSLEPDQVSFSSVLSACAGLVELGFGKQVHGSIVKRGLVGL 265

Query: 169 VYVNNSLIDMYSKCGLFDDVVKLFSNIGARDVVTWNIMIMACVYNNNYEDACNNFWMMRR 228
           VYV NSL+DMY KCGLF+D  KLF   G RDVVTWN+MI  CV++ N+E AC  F  M R
Sbjct: 266 VYVKNSLVDMYCKCGLFEDATKLFCGGGERDVVTWNVMITGCVHSQNFEQACTFFQAMIR 325

Query: 229 EGLIPDEASYSS 230
           EG+ PDEASYSS
Sbjct: 326 EGVEPDEASYSS 335

[Close]

BLAST of Cp4.1LG01g17540 vs. TrEMBL
Match: A0A0B2PYI8_GLYSO (Pentatricopeptide repeat-containing protein, chloroplastic OS=Glycine soja GN=glysoja_028603 PE=4 SV=1)

HSP 1 Score: 165.2 bits (417), Expect = 1.1e-37
Identity = 91/192 (47.40%), Postives = 115/192 (59.90%), Query Frame = 1


Query: 49  LKHATQIHSHLITTAFLSLPFLFNNLLNLYAKSGSLDQTLLFFSSTPHDSKNVVSWTSLI 108
           L    QIH+ +    FL+ PF+   LL++YAK GS+      F   PH  +N+VSW S+I
Sbjct: 145 LSEGQQIHALIHKHCFLNDPFVATALLDMYAKCGSMLLAENVFDEMPH--RNLVSWNSMI 204

Query: 109 TQFSRSKRPFHALAFFNHM-----------SALSACANVGNWEFGKQVHGVALKLGVRNL 168
             F ++K    A+  F  +           S LSACA +   +FGKQVHG  +K G+  L
Sbjct: 205 VGFVKNKLYGRAIGVFREVLSLGPDQVSISSVLSACAGLVELDFGKQVHGSIVKRGLVGL 264

Query: 169 VYVNNSLIDMYSKCGLFDDVVKLFSNIGARDVVTWNIMIMACVYNNNYEDACNNFWMMRR 228
           VYV NSL+DMY KCGLF+D  KLF   G RDVVTWN+MIM C +  N+E AC  F  M R
Sbjct: 265 VYVKNSLVDMYCKCGLFEDATKLFCGGGDRDVVTWNVMIMGCFHCQNFEQACTYFQAMIR 324

Query: 229 EGLIPDEASYSS 230
           EG+ PDEASYSS
Sbjct: 325 EGVEPDEASYSS 334

[Close]

BLAST of Cp4.1LG01g17540 vs. TrEMBL
Match: I1JR12_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_03G227900 PE=4 SV=2)

HSP 1 Score: 163.7 bits (413), Expect = 3.2e-37
Identity = 91/192 (47.40%), Postives = 114/192 (59.38%), Query Frame = 1


Query: 49  LKHATQIHSHLITTAFLSLPFLFNNLLNLYAKSGSLDQTLLFFSSTPHDSKNVVSWTSLI 108
           L    QIH+ +    FL+ PF+   LL++YAK GS+      F   PH  +N+VSW S+I
Sbjct: 148 LSEGQQIHALIHKHCFLNDPFVATALLDMYAKCGSMLLAENVFDEMPH--RNLVSWNSMI 207

Query: 109 TQFSRSKRPFHALAFFNHM-----------SALSACANVGNWEFGKQVHGVALKLGVRNL 168
             F ++K    A+  F  +           S LSACA +   +FGKQVHG  +K G+  L
Sbjct: 208 VGFVKNKLYGRAIGVFREVLSLGPDQVSISSVLSACAGLVELDFGKQVHGSIVKRGLVGL 267

Query: 169 VYVNNSLIDMYSKCGLFDDVVKLFSNIGARDVVTWNIMIMACVYNNNYEDACNNFWMMRR 228
           VYV NSL+DMY KCGLF+D  KLF   G RDVVTWN+MIM C    N+E AC  F  M R
Sbjct: 268 VYVKNSLVDMYCKCGLFEDATKLFCGGGDRDVVTWNVMIMGCFRCRNFEQACTYFQAMIR 327

Query: 229 EGLIPDEASYSS 230
           EG+ PDEASYSS
Sbjct: 328 EGVEPDEASYSS 337

[Close]

BLAST of Cp4.1LG01g17540 vs. TAIR10
Match: AT1G11290.1 (AT1G11290.1 Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 107.1 bits (266), Expect = 1.8e-23
Identity = 65/200 (32.50%), Postives = 103/200 (51.50%), Query Frame = 1


Query: 43  INSGRTLKHATQIHSHLITTAFLSLPFLFNNLLNLYAKSGSLDQTLLFFSSTPHDSKNVV 102
           +++ R +    +IH + + + F SL  +   L+++YAK GSL+     F       +NVV
Sbjct: 246 VSALRLISVGKEIHGYAMRSGFDSLVNISTALVDMYAKCGSLETARQLFDGMLE--RNVV 305

Query: 103 SWTSLITQFSRSKRPFHALAFFNHM-------------SALSACANVGNWEFGKQVHGVA 162
           SW S+I  + +++ P  A+  F  M              AL ACA++G+ E G+ +H ++
Sbjct: 306 SWNSMIDAYVQNENPKEAMLIFQKMLDEGVKPTDVSVMGALHACADLGDLERGRFIHKLS 365

Query: 163 LKLGVRNLVYVNNSLIDMYSKCGLFDDVVKLFSNIGARDVVTWNIMIMACVYNNNYEDAC 222
           ++LG+   V V NSLI MY KC   D    +F  + +R +V+WN MI+    N    DA 
Sbjct: 366 VELGLDRNVSVVNSLISMYCKCKEVDTAASMFGKLQSRTLVSWNAMILGFAQNGRPIDAL 425

Query: 223 NNFWMMRREGLIPDEASYSS 230
           N F  MR   + PD  +Y S
Sbjct: 426 NYFSQMRSRTVKPDTFTYVS 443

[Close]

BLAST of Cp4.1LG01g17540 vs. TAIR10
Match: AT3G61170.1 (AT3G61170.1 Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 106.7 bits (265), Expect = 2.3e-23
Identity = 69/208 (33.17%), Postives = 107/208 (51.44%), Query Frame = 1


Query: 35  LPTSLNSLINSGRTLKHATQIHSHLITTAFLSLPFLFNNLLNLYAKSGSLDQTLLFFSST 94
           +P+ LN    S   +K A+  H  ++ T + +   + N L+++YAK G +D  L  F   
Sbjct: 331 IPSILNCFALSRTEMKIASSAHCLIVKTGYATYKLVNNALVDMYAKRGIMDSALKVFEGM 390

Query: 95  PHDSKNVVSWTSLITQFSRSKRPFHALAFFNHM-------------SALSACANVGNWEF 154
               K+V+SWT+L+T  + +     AL  F +M             S LSA A +   EF
Sbjct: 391 IE--KDVISWTALVTGNTHNGSYDEALKLFCNMRVGGITPDKIVTASVLSASAELTLLEF 450

Query: 155 GKQVHGVALKLGVRNLVYVNNSLIDMYSKCGLFDDVVKLFSNIGARDVVTWNIMIMACVY 214
           G+QVHG  +K G  + + VNNSL+ MY+KCG  +D   +F+++  RD++TW  +I+    
Sbjct: 451 GQQVHGNYIKSGFPSSLSVNNSLVTMYTKCGSLEDANVIFNSMEIRDLITWTCLIVGYAK 510

Query: 215 NNNYEDACNNFWMMRR-EGLIPDEASYS 229
           N   EDA   F  MR   G+ P    Y+
Sbjct: 511 NGLLEDAQRYFDSMRTVYGITPGPEHYA 536

[Close]

BLAST of Cp4.1LG01g17540 vs. TAIR10
Match: AT3G24000.1 (AT3G24000.1 Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 106.3 bits (264), Expect = 3.1e-23
Identity = 63/188 (33.51%), Postives = 99/188 (52.66%), Query Frame = 1


Query: 55  IHSHLITTAFLSLPFLFNNLLNLYAKSGSLDQTLLFFSSTPHDSKNVVSWTSLITQFSRS 114
           +H+H++ + F     + N LLN+YAK GSL++    F   P   ++ V+WT+LI+ +S+ 
Sbjct: 82  VHAHILQSIFRHDIVMGNTLLNMYAKCGSLEEARKVFEKMPQ--RDFVTWTTLISGYSQH 141

Query: 115 KRPFHALAFFNHM-------------SALSACANVGNWEFGKQVHGVALKLGVRNLVYVN 174
            RP  AL FFN M             S + A A       G Q+HG  +K G  + V+V 
Sbjct: 142 DRPCDALLFFNQMLRFGYSPNEFTLSSVIKAAAAERRGCCGHQLHGFCVKCGFDSNVHVG 201

Query: 175 NSLIDMYSKCGLFDDVVKLFSNIGARDVVTWNIMIMACVYNNNYEDACNNFWMMRREGLI 230
           ++L+D+Y++ GL DD   +F  + +R+ V+WN +I      +  E A   F  M R+G  
Sbjct: 202 SALLDLYTRYGLMDDAQLVFDALESRNDVSWNALIAGHARRSGTEKALELFQGMLRDGFR 261

[Close]

BLAST of Cp4.1LG01g17540 vs. TAIR10
Match: AT4G21065.1 (AT4G21065.1 Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 100.5 bits (249), Expect = 1.7e-21
Identity = 60/187 (32.09%), Postives = 101/187 (54.01%), Query Frame = 1


Query: 55  IHSHLITTAFLSLPFLFNNLLNLYAKSGSLDQTLLFFSSTPHDSKNVVSWTSLITQFSRS 114
           IHS +I + F SL ++ N+LL+LYA  G +      F   P   K++V+W S+I  F+ +
Sbjct: 143 IHSVVIRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPE--KDLVAWNSVINGFAEN 202

Query: 115 KRPFHALAFFNHM-------------SALSACANVGNWEFGKQVHGVALKLGVRNLVYVN 174
            +P  ALA +  M             S LSACA +G    GK+VH   +K+G+   ++ +
Sbjct: 203 GKPEEALALYTEMNSKGIKPDGFTIVSLLSACAKIGALTLGKRVHVYMIKVGLTRNLHSS 262

Query: 175 NSLIDMYSKCGLFDDVVKLFSNIGARDVVTWNIMIMACVYNNNYEDACNNF-WMMRREGL 228
           N L+D+Y++CG  ++   LF  +  ++ V+W  +I+    N   ++A   F +M   EGL
Sbjct: 263 NVLLDLYARCGRVEEAKTLFDEMVDKNSVSWTSLIVGLAVNGFGKEAIELFKYMESTEGL 322

[Close]

BLAST of Cp4.1LG01g17540 vs. TAIR10
Match: AT4G37170.1 (AT4G37170.1 Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 100.1 bits (248), Expect = 2.2e-21
Identity = 53/194 (27.32%), Postives = 97/194 (50.00%), Query Frame = 1


Query: 47  RTLKHATQIHSHLITTAFLSLPFLFNNLLNLYAKSGSLDQTLLFFSSTPHDSKNVVSWTS 106
           + ++   +IH H++     S   L+++L+++Y K G +D+    F       K+VVSWTS
Sbjct: 232 KCIRRGKEIHGHIVRAGLDSDEVLWSSLMDMYGKCGCIDEARNIFDKIVE--KDVVSWTS 291

Query: 107 LITQFSRSKRPFHALAFFNHM-------------SALSACANVGNWEFGKQVHGVALKLG 166
           +I ++ +S R     + F+ +               L+ACA++   E GKQVHG   ++G
Sbjct: 292 MIDRYFKSSRWREGFSLFSELVGSCERPNEYTFAGVLNACADLTTEELGKQVHGYMTRVG 351

Query: 167 VRNLVYVNNSLIDMYSKCGLFDDVVKLFSNIGARDVVTWNIMIMACVYNNNYEDACNNFW 226
                + ++SL+DMY+KCG  +    +       D+V+W  +I  C  N   ++A   F 
Sbjct: 352 FDPYSFASSSLVDMYTKCGNIESAKHVVDGCPKPDLVSWTSLIGGCAQNGQPDEALKYFD 411

Query: 227 MMRREGLIPDEASY 228
           ++ + G  PD  ++
Sbjct: 412 LLLKSGTKPDHVTF 423

[Close]

BLAST of Cp4.1LG01g17540 vs. NCBI nr
Match: gi|778662180|ref|XP_011659482.1| (PREDICTED: pentatricopeptide repeat-containing protein At3g24000, mitochondrial-like [Cucumis sativus])

HSP 1 Score: 194.9 bits (494), Expect = 1.9e-46
Identity = 111/207 (53.62%), Postives = 134/207 (64.73%), Query Frame = 1


Query: 37  TSLNSLINSGRTLKHATQIHSHLITTAFLSLPFLFNNLLNLYAKSGSLDQTLLFFSSTPH 96
           TSLNSL+N  RT KHATQIHS LITTA LSLPFLFNNLLNLYAK GS+DQTLL FSS P 
Sbjct: 31  TSLNSLLNCSRTSKHATQIHSQLITTALLSLPFLFNNLLNLYAKCGSVDQTLLLFSSAPD 90

Query: 97  DSKNVVSWTSLITQFSRSKRPFHALAFFNHM-------------SALSACANVGNWEFGK 156
           DSKNVVSWTSLITQ +R KRPF AL FFNHM             + LSAC +      G+
Sbjct: 91  DSKNVVSWTSLITQLTRFKRPFKALTFFNHMRRSGVYPNHYTFSAVLSACTDTTASVHGE 150

Query: 157 QVHGVALKLGVRNLVYVNNSLIDMYSKCGLFDDVVKLFSNIGARDVVTWNIMIMACVYNN 216
           Q+H +  K G    V+V ++L+DMY+KC       K+F  +  R++V+WN MI+  + N 
Sbjct: 151 QMHSLVWKHGFLAEVFVVSALVDMYAKCCDMLMAEKVFEEMPVRNLVSWNTMIVGFLQNK 210

Query: 217 NYEDACNNFWMMRREGLIP-DEASYSS 230
            Y+ A   F  +  E L   DE S+SS
Sbjct: 211 LYDQAIFFFKTLLLENLTALDEVSFSS 237

[Close]

BLAST of Cp4.1LG01g17540 vs. NCBI nr
Match: gi|659099256|ref|XP_008450508.1| (PREDICTED: pentatricopeptide repeat-containing protein At3g24000, mitochondrial-like [Cucumis melo])

HSP 1 Score: 191.4 bits (485), Expect = 2.0e-45
Identity = 109/208 (52.40%), Postives = 134/208 (64.42%), Query Frame = 1


Query: 36  PTSLNSLINSGRTLKHATQIHSHLITTAFLSLPFLFNNLLNLYAKSGSLDQTLLFFSSTP 95
           PTS N+L+NSGRT KHATQIHS LITTA LSLPFLFNNLLNLYAK G +DQTLL FSS P
Sbjct: 30  PTSFNNLLNSGRTSKHATQIHSQLITTALLSLPFLFNNLLNLYAKCGCVDQTLLLFSSAP 89

Query: 96  HDSKNVVSWTSLITQFSRSKRPFHALAFFNHM-------------SALSACANVGNWEFG 155
             SK+VVSWTSLITQ +RSKRPF AL FFN M             + LSAC +      G
Sbjct: 90  DVSKDVVSWTSLITQLTRSKRPFKALTFFNQMRLSGVYPNHYTLSAVLSACTDTMVSVHG 149

Query: 156 KQVHGVALKLGVRNLVYVNNSLIDMYSKCGLFDDVVKLFSNIGARDVVTWNIMIMACVYN 215
           +Q+H +  K G    V+V ++L+DMY+KC       K+F  +  R++V+WN MI+  + N
Sbjct: 150 EQMHSLVWKHGFHAEVFVVSALVDMYAKCCDMRMAEKVFEEMPVRNLVSWNSMIVGFLQN 209

Query: 216 NNYEDACNNFWMMRREGLIP-DEASYSS 230
             Y+ A   F  +  E L   DE S+SS
Sbjct: 210 KLYDQAIFFFKTLLLENLTALDEVSFSS 237

[Close]

BLAST of Cp4.1LG01g17540 vs. NCBI nr
Match: gi|700210899|gb|KGN65995.1| (hypothetical protein Csa_1G560780 [Cucumis sativus])

HSP 1 Score: 183.3 bits (464), Expect = 5.6e-43
Identity = 88/110 (80.00%), Postives = 94/110 (85.45%), Query Frame = 1


Query: 120 ALAFFNHMSALSACANVGNWEFGKQVHGVALKLGVRNLVYVNNSLIDMYSKCGLFDDVVK 179
           AL   +  S  SACAN GN EFGKQVHGVALKLGV NLVY+NNSL DMY KCGLF+DV K
Sbjct: 185 ALDEVSFSSVFSACANAGNLEFGKQVHGVALKLGVWNLVYINNSLSDMYGKCGLFNDVAK 244

Query: 180 LFSNIGARDVVTWNIMIMACVYNNNYEDACNNFWMMRREGLIPDEASYSS 230
           LFSN GARDVVTWNIMIMA VYN+NYEDACN+FWMMRR+G IPDEASYSS
Sbjct: 245 LFSNTGARDVVTWNIMIMAYVYNHNYEDACNSFWMMRRKGSIPDEASYSS 294

[Close]

BLAST of Cp4.1LG01g17540 vs. NCBI nr
Match: gi|720076691|ref|XP_010240804.1| (PREDICTED: putative pentatricopeptide repeat-containing protein At3g13770, mitochondrial [Nelumbo nucifera])

HSP 1 Score: 172.2 bits (435), Expect = 1.3e-39
Identity = 87/193 (45.08%), Postives = 123/193 (63.73%), Query Frame = 1


Query: 51  HATQIHSHLITTAFLSLPFLFNNLLNLYAKSGSLDQTLLFFSSTPHDSKNVVSWTSLITQ 110
           H  QIHS +    F +  F+ + ++++YAK  ++D     F   P   +N+VSW ++I  
Sbjct: 162 HGQQIHSLIHKHGFGTDVFVGSAMIDMYAKCSNMDSAEKVFDEMPE--RNLVSWNAMIVG 221

Query: 111 FSRSKRPFHALAFFNHM--------------SALSACANVGNWEFGKQVHGVALKLGVRN 170
           FS +K    A+  F  +              S LSACANVG+ +FG+QVHGV +K G+ +
Sbjct: 222 FSHNKIFDRAIDVFKEVLRDKSVSPDQVSFSSVLSACANVGSLDFGRQVHGVVVKHGLMH 281

Query: 171 LVYVNNSLIDMYSKCGLFDDVVKLFSNIGARDVVTWNIMIMACVYNNNYEDACNNFWMMR 230
           L YV NSL+DMY+KCG F D ++LF +I  RDVVTWN+M M CV N+ +E+ACN FW+MR
Sbjct: 282 LAYVKNSLVDMYNKCGCFQDSIQLFGSIPDRDVVTWNVMAMGCVQNDRFEEACNYFWVMR 341

[Close]

BLAST of Cp4.1LG01g17540 vs. NCBI nr
Match: gi|950948959|ref|XP_014495064.1| (PREDICTED: pentatricopeptide repeat-containing protein At3g24000, mitochondrial-like [Vigna radiata var. radiata])

HSP 1 Score: 168.7 bits (426), Expect = 1.4e-38
Identity = 92/192 (47.92%), Postives = 116/192 (60.42%), Query Frame = 1


Query: 49  LKHATQIHSHLITTAFLSLPFLFNNLLNLYAKSGSLDQTLLFFSSTPHDSKNVVSWTSLI 108
           L    QIH+ L+  AF +  F+   LL++YA  GS+      F   PH  +N+VSW S+I
Sbjct: 143 LSQGQQIHALLLKHAFYTDTFVATALLHMYASCGSMSFAENVFDQMPH--RNLVSWNSMI 202

Query: 109 TQFSRSKRPFHALAFFNHM-----------SALSACANVGNWEFGKQVHGVALKLGVRNL 168
             F ++K    A+ FF  +           S LSACA +    FGKQVHG  +K G+  L
Sbjct: 203 VGFVKNKMYCRAIGFFREVLSLDPDQVSFSSVLSACAGLVELGFGKQVHGSIVKRGLVGL 262

Query: 169 VYVNNSLIDMYSKCGLFDDVVKLFSNIGARDVVTWNIMIMACVYNNNYEDACNNFWMMRR 228
           VYV NSL+DMY KCGLF+D  KLF   G RDVVTWN+MIM CV++ N+E AC  F  M R
Sbjct: 263 VYVKNSLVDMYCKCGLFEDATKLFCGGGDRDVVTWNVMIMGCVHSQNFEQACTFFQAMIR 322

Query: 229 EGLIPDEASYSS 230
           EG+ PDEASYSS
Sbjct: 323 EGVEPDEASYSS 332

The following BLAST results are available for this feature:

BLAST of Cp4.1LG01g17540 vs. Swiss-Prot


Match Name	E-value	Identity	Description
PPR32_ARATH	3.2e-22	32.50	Pentatricopeptide repeat-containing protein At1g11290, chloroplastic OS=Arabidop...	[more]
PP252_ARATH	5.4e-22	33.51	Pentatricopeptide repeat-containing protein At3g24000, mitochondrial OS=Arabidop...	[more]
PP330_ARATH	3.0e-20	32.09	Pentatricopeptide repeat-containing protein At4g21065 OS=Arabidopsis thaliana GN...	[more]
PP353_ARATH	3.9e-20	27.32	Pentatricopeptide repeat-containing protein At4g37170 OS=Arabidopsis thaliana GN...	[more]
PPR8_ARATH	5.1e-20	31.05	Pentatricopeptide repeat-containing protein At1g03540 OS=Arabidopsis thaliana GN...	[more]

BLAST of Cp4.1LG01g17540 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LVV0_CUCSA	3.9e-43	80.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G560780 PE=4 SV=1	[more]
A0A0S3S001_PHAAN	6.4e-38	47.40	Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.04G378000 PE=...	[more]
A0A0L9U9B3_PHAAN	6.4e-38	47.40	Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan03g269300 PE=4 SV=1	[more]
A0A0B2PYI8_GLYSO	1.1e-37	47.40	Pentatricopeptide repeat-containing protein, chloroplastic OS=Glycine soja GN=gl...	[more]
I1JR12_SOYBN	3.2e-37	47.40	Uncharacterized protein OS=Glycine max GN=GLYMA_03G227900 PE=4 SV=2	[more]

BLAST of Cp4.1LG01g17540 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G11290.1	1.8e-23	32.50	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT3G61170.1	2.3e-23	33.17	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT3G24000.1	3.1e-23	33.51	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT4G21065.1	1.7e-21	32.09	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT4G37170.1	2.2e-21	27.32	Pentatricopeptide repeat (PPR) superfamily protein	[more]

BLAST of Cp4.1LG01g17540 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778662180\|ref\|XP_011659482.1\|	1.9e-46	53.62	PREDICTED: pentatricopeptide repeat-containing protein At3g24000, mitochondrial-...	[more]
gi\|659099256\|ref\|XP_008450508.1\|	2.0e-45	52.40	PREDICTED: pentatricopeptide repeat-containing protein At3g24000, mitochondrial-...	[more]
gi\|700210899\|gb\|KGN65995.1\|	5.6e-43	80.00	hypothetical protein Csa_1G560780 [Cucumis sativus]	[more]
gi\|720076691\|ref\|XP_010240804.1\|	1.3e-39	45.08	PREDICTED: putative pentatricopeptide repeat-containing protein At3g13770, mitoc...	[more]
gi\|950948959\|ref\|XP_014495064.1\|	1.4e-38	47.92	PREDICTED: pentatricopeptide repeat-containing protein At3g24000, mitochondrial-...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR002885	Pentatricopeptide_repeat

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG01g17540.1	Cp4.1LG01g17540.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002885	Pentatricopeptide repeat	PFAM	PF01535	PPR	coord: 102..127 score: 0.0049coord: 162..182 score: 0.
IPR002885	Pentatricopeptide repeat	PFAM	PF13041	PPR_2	coord: 188..229 score: 2.
IPR002885	Pentatricopeptide repeat	TIGRFAMs	TIGR00756	TIGR00756	coord: 190..224 score: 4.
IPR002885	Pentatricopeptide repeat	PROFILE	PS51375	PPR	coord: 100..134 score: 7.805coord: 188..222 score: 10.698coord: 157..187 score: 6.741coord: 67..97 score: 5
None	No IPR available	unknown	Coil	Coil	coord: 264..275 scor
None	No IPR available	PANTHER	PTHR24015	FAMILY NOT NAMED	coord: 4..229 score: 3.0

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cp4.1LG01g17540	Cucurbita maxima (Rimu)	cmacpeB436
Cp4.1LG01g17540	Cucurbita maxima (Rimu)	cmacpeB721
Cp4.1LG01g17540	Cucurbita moschata (Rifu)	cmocpeB286
Cp4.1LG01g17540	Cucurbita moschata (Rifu)	cmocpeB400
Cp4.1LG01g17540	Cucurbita moschata (Rifu)	cmocpeB673
Cp4.1LG01g17540	Cucurbita moschata (Rifu)	cmocpeB680
Cp4.1LG01g17540	Cucurbita moschata (Rifu)	cmocpeB685
Cp4.1LG01g17540	Wild cucumber (PI 183967)	cpecpiB429
Cp4.1LG01g17540	Wild cucumber (PI 183967)	cpecpiB435
Cp4.1LG01g17540	Cucumber (Chinese Long) v2	cpecuB434
Cp4.1LG01g17540	Cucumber (Chinese Long) v2	cpecuB436
Cp4.1LG01g17540	Bottle gourd (USVL1VR-Ls)	cpelsiB313
Cp4.1LG01g17540	Watermelon (Charleston Gray)	cpewcgB381
Cp4.1LG01g17540	Watermelon (Charleston Gray)	cpewcgB400
Cp4.1LG01g17540	Watermelon (97103) v1	cpewmB401
Cp4.1LG01g17540	Watermelon (97103) v1	cpewmB439
Cp4.1LG01g17540	Melon (DHL92) v3.5.1	cpemeB352
Cp4.1LG01g17540	Melon (DHL92) v3.5.1	cpemeB387
Cp4.1LG01g17540	Cucumber (Gy14) v2	cgybcpeB639
Cp4.1LG01g17540	Cucumber (Gy14) v2	cgybcpeB640
Cp4.1LG01g17540	Melon (DHL92) v3.6.1	cpemedB413
Cp4.1LG01g17540	Melon (DHL92) v3.6.1	cpemedB448
Cp4.1LG01g17540	Silver-seed gourd	carcpeB1450
Cp4.1LG01g17540	Cucumber (Chinese Long) v3	cpecucB0530
Cp4.1LG01g17540	Cucumber (Chinese Long) v3	cpecucB0535
Cp4.1LG01g17540	Wax gourd	cpewgoB0574
Cp4.1LG01g17540	Cucurbita pepo (Zucchini)	cpecpeB037
Cp4.1LG01g17540	Cucumber (Gy14) v1	cgycpeB0757