Cp4.1LG01g17530 (gene) Cucurbita pepo (Zucchini)

NameCp4.1LG01g17530
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionMads box protein, putative
LocationCp4.1LG01 : 13577459 .. 13578284 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TGCATATGAATCACAAGAATAAAAAAGAAAAAAAAAAAAAAAAAAAAGAAAATCATGACGAGGAAGAAAGTGAAGCTGGCTTACATTGTGAACGACTCCGCAAGAAAGGCGACATTCAAGAAGAGGAAGAGAGGGCTTATGAAGAAGGTGAGTGAATTGAGCACCCTTTGCGGGATTGAGGCATGCGCCATCGTGTTTAGCCCCTACGATGCTCAGCCTGAGCTGTGGCCTTCCCCCATCGGCGTCCAGCGCGTTCTCTCTCAATTCAAGAAGATGCCCGAGATGGAGCAAAGCAAGAAAATGGTGCATTTTTCAGACACCCTTTTGTTTCTTTTCAAAATTGAGTGTCCTAACACAAGCTGCTGCCCTTTCCCTTGACACAGGTGAACCAGGAGACGTTTCTGCGGCAGAGGATCGCCAAGGCCAATGACCAACTGAAGAAGATGAGAAAGGACAACCGGGAGAAAGAGATGACGCGGCTTATGTTTCAAAGCCTCACCGCTGCCAAAGGCCTTCATGCACTCAACATGCTTGACTTGAACGACCTCACTTGGCTCATTGATCAAAATCTCAAAGACATTACTAAACGCATTGACTCTCTCAAGAAGCCTCCGCCCCACTCTCAGCCACACCCTCACCCTCACCCTCACCCTCAGCCGCCTCCCCCGCCCCAGACCGCCGCCTGGCTTATGGAGCTTGTCAGCCCTCAGGACCAAATGGGGTTCGTCGGGGATGACATGCTCTTGCCCTTCGGAGATCAAACTTATAGCCATAATAATGCAATGTGGTCAAATGCCTTTTTCCCTTAGCTTTCTGTAATTTTCTT

mRNA sequence

TGCATATGAATCACAAGAATAAAAAAGAAAAAAAAAAAAAAAAAAAAGAAAATCATGACGAGGAAGAAAGTGAAGCTGGCTTACATTGTGAACGACTCCGCAAGAAAGGCGACATTCAAGAAGAGGAAGAGAGGGCTTATGAAGAAGGTGAGTGAATTGAGCACCCTTTGCGGGATTGAGGCATGCGCCATCGTGTTTAGCCCCTACGATGCTCAGCCTGAGCTGTGGCCTTCCCCCATCGGCGTCCAGCGCGTTCTCTCTCAATTCAAGAAGATGCCCGAGATGGAGCAAAGCAAGAAAATGGTGAACCAGGAGACGTTTCTGCGGCAGAGGATCGCCAAGGCCAATGACCAACTGAAGAAGATGAGAAAGGACAACCGGGAGAAAGAGATGACGCGGCTTATGTTTCAAAGCCTCACCGCTGCCAAAGGCCTTCATGCACTCAACATGCTTGACTTGAACGACCTCACTTGGCTCATTGATCAAAATCTCAAAGACATTACTAAACGCATTGACTCTCTCAAGAAGCCTCCGCCCCACTCTCAGCCACACCCTCACCCTCACCCTCACCCTCAGCCGCCTCCCCCGCCCCAGACCGCCGCCTGGCTTATGGAGCTTGTCAGCCCTCAGGACCAAATGGGGTTCGTCGGGGATGACATGCTCTTGCCCTTCGGAGATCAAACTTATAGCCATAATAATGCAATGTGGTCAAATGCCTTTTTCCCTTAGCTTTCTGTAATTTTCTT

Coding sequence (CDS)

ATGACGAGGAAGAAAGTGAAGCTGGCTTACATTGTGAACGACTCCGCAAGAAAGGCGACATTCAAGAAGAGGAAGAGAGGGCTTATGAAGAAGGTGAGTGAATTGAGCACCCTTTGCGGGATTGAGGCATGCGCCATCGTGTTTAGCCCCTACGATGCTCAGCCTGAGCTGTGGCCTTCCCCCATCGGCGTCCAGCGCGTTCTCTCTCAATTCAAGAAGATGCCCGAGATGGAGCAAAGCAAGAAAATGGTGAACCAGGAGACGTTTCTGCGGCAGAGGATCGCCAAGGCCAATGACCAACTGAAGAAGATGAGAAAGGACAACCGGGAGAAAGAGATGACGCGGCTTATGTTTCAAAGCCTCACCGCTGCCAAAGGCCTTCATGCACTCAACATGCTTGACTTGAACGACCTCACTTGGCTCATTGATCAAAATCTCAAAGACATTACTAAACGCATTGACTCTCTCAAGAAGCCTCCGCCCCACTCTCAGCCACACCCTCACCCTCACCCTCACCCTCAGCCGCCTCCCCCGCCCCAGACCGCCGCCTGGCTTATGGAGCTTGTCAGCCCTCAGGACCAAATGGGGTTCGTCGGGGATGACATGCTCTTGCCCTTCGGAGATCAAACTTATAGCCATAATAATGCAATGTGGTCAAATGCCTTTTTCCCTTAG

Protein sequence

MTRKKVKLAYIVNDSARKATFKKRKRGLMKKVSELSTLCGIEACAIVFSPYDAQPELWPSPIGVQRVLSQFKKMPEMEQSKKMVNQETFLRQRIAKANDQLKKMRKDNREKEMTRLMFQSLTAAKGLHALNMLDLNDLTWLIDQNLKDITKRIDSLKKPPPHSQPHPHPHPHPQPPPPPQTAAWLMELVSPQDQMGFVGDDMLLPFGDQTYSHNNAMWSNAFFP
BLAST of Cp4.1LG01g17530 vs. Swiss-Prot
Match: AGL80_ARATH (Agamous-like MADS-box protein AGL80 OS=Arabidopsis thaliana GN=AGL80 PE=1 SV=1)

HSP 1 Score: 204.1 bits (518), Expect = 1.6e-51
Identity = 103/157 (65.61%), Postives = 130/157 (82.80%), Query Frame = 1

Query: 1   MTRKKVKLAYIVNDSARKATFKKRKRGLMKKVSELSTLCGIEACAIVFSPYDAQPELWPS 60
           MTRKKVKLAYI NDS+RKATFKKRK+GLMKKV ELSTLCGI ACAI++SPYD  PE+WPS
Sbjct: 1   MTRKKVKLAYISNDSSRKATFKKRKKGLMKKVHELSTLCGITACAIIYSPYDTNPEVWPS 60

Query: 61  PIGVQRVLSQFKKMPEMEQSKKMVNQETFLRQRIAKANDQLKKMRKDNREKEMTRLMFQS 120
             GVQRV+S+F+ +PEM+Q KKMV+QE FL+QRIAKA + L++ RKD+RE EMT +MFQ 
Sbjct: 61  NSGVQRVVSEFRTLPEMDQHKKMVDQEGFLKQRIAKATETLRRQRKDSRELEMTEVMFQC 120

Query: 121 LTAAKGLHALNMLDLNDLTWLIDQNLKDITKRIDSLK 158
           L     +  LN++DLNDL ++I+Q LKD+ +RI+ L+
Sbjct: 121 LIGNMEMFHLNIVDLNDLGYMIEQYLKDVNRRIEILR 157

BLAST of Cp4.1LG01g17530 vs. Swiss-Prot
Match: PHE2_ARATH (MADS-box transcription factor PHERES 2 OS=Arabidopsis thaliana GN=PHE2 PE=1 SV=1)

HSP 1 Score: 138.3 bits (347), Expect = 1.0e-31
Identity = 75/167 (44.91%), Postives = 116/167 (69.46%), Query Frame = 1

Query: 3   RKKVKLAYIVNDSARKATFKKRKRGLMKKVSELSTLCGIEACAIVFSPYDAQPELWPSPI 62
           ++K+KL+ I N  +RK TF KRK+G+ KK++EL TLCG+EACA+V+SP+++ PE WPS  
Sbjct: 2   KRKMKLSLIENSVSRKTTFTKRKKGMTKKLTELVTLCGVEACAVVYSPFNSIPEAWPSRE 61

Query: 63  GVQRVLSQFKKMPEMEQSKKMVNQETFLRQRIAKANDQLKKMRKDNREKEMTRLMFQSLT 122
           GV+ V+S+F ++  ++++KKMV+QETF+ QRIAK  +QL+K+R +N   ++  LMF  L 
Sbjct: 62  GVEDVVSKFMELSVLDRTKKMVDQETFISQRIAKEKEQLQKLRDENHNSQIRELMFGCLK 121

Query: 123 AAKGLHALNMLDLNDLTWLIDQNLKDITKRIDSLKKPPPHSQPHPHP 170
               ++ L+  DL DL+  ID+ L  +T+RI+ L +    S   P P
Sbjct: 122 GETNVYNLDGRDLQDLSLYIDKYLNGLTRRIEILIENGESSSSLPLP 168

BLAST of Cp4.1LG01g17530 vs. Swiss-Prot
Match: PHE1_ARATH (MADS-box transcription factor PHERES 1 OS=Arabidopsis thaliana GN=PHE1 PE=1 SV=1)

HSP 1 Score: 136.0 bits (341), Expect = 5.2e-31
Identity = 75/167 (44.91%), Postives = 114/167 (68.26%), Query Frame = 1

Query: 3   RKKVKLAYIVNDSARKATFKKRKRGLMKKVSELSTLCGIEACAIVFSPYDAQPELWPSPI 62
           R K+KL++I NDS RK TF KRK+G++KK +EL TLCG++ACA++ SPY++  E WPS  
Sbjct: 2   RGKMKLSFIENDSVRKTTFTKRKKGMLKKFNELVTLCGVDACAVIRSPYNSIQEPWPSRE 61

Query: 63  GVQRVLSQFKKMPEMEQSKKMVNQETFLRQRIAKANDQLKKMRKDNREKEMTRLMFQSLT 122
           GV+ V+S+F +   ++++KKMV+QETFLRQRIAK  ++L+K+R +NR  ++  LMF  L 
Sbjct: 62  GVEEVMSKFMEFSVLDRTKKMVDQETFLRQRIAKETERLQKLRDENRNSQIRDLMFGCLK 121

Query: 123 AAKGLHALNMLDLNDLTWLIDQNLKDITKRIDSLKKPPPHSQPHPHP 170
               +  L+  DL DL   +++ L  + +R++ LK+    S   P P
Sbjct: 122 GEVDVSHLHGRDLLDLNVFLNKYLNGVIRRVEILKENGESSSSVPPP 168

BLAST of Cp4.1LG01g17530 vs. Swiss-Prot
Match: AGL36_ARATH (Agamous-like MADS-box protein AGL36 OS=Arabidopsis thaliana GN=AGL36 PE=1 SV=1)

HSP 1 Score: 133.7 bits (335), Expect = 2.6e-30
Identity = 69/155 (44.52%), Postives = 104/155 (67.10%), Query Frame = 1

Query: 4   KKVKLAYIVNDSARKATFKKRKRGLMKKVSELSTLCGIEACAIVFSPYDAQPELWPSPIG 63
           KKVKL+ I N+ +RK +F KRK G+ KK+ ELSTLCG++ACA+++SP+   PE WPS  G
Sbjct: 2   KKVKLSLIANERSRKTSFIKRKDGIFKKLHELSTLCGVQACALIYSPFIPVPESWPSREG 61

Query: 64  VQRVLSQFKKMPEMEQSKKMVNQETFLRQRIAKANDQLKKMRKDNREKEMTRLMFQSLTA 123
            ++V S+F +MP   ++KKM++QET+L +RI KA +QLK +  +NRE ++ R MF  +  
Sbjct: 62  AKKVASRFLEMPPTARTKKMMDQETYLMERITKAKEQLKNLAAENRELQVRRFMFDCVEG 121

Query: 124 AKGLHALNMLDLNDLTWLIDQNLKDITKRIDSLKK 159
               +  +  DL DL   I+  L  +  RI+S+K+
Sbjct: 122 KMSQYHYDAKDLQDLQSCINLYLDQLNGRIESIKE 156

BLAST of Cp4.1LG01g17530 vs. Swiss-Prot
Match: AGL90_ARATH (Agamous-like MADS-box protein AGL90 OS=Arabidopsis thaliana GN=AGL90 PE=1 SV=2)

HSP 1 Score: 132.1 bits (331), Expect = 7.5e-30
Identity = 67/155 (43.23%), Postives = 103/155 (66.45%), Query Frame = 1

Query: 4   KKVKLAYIVNDSARKATFKKRKRGLMKKVSELSTLCGIEACAIVFSPYDAQPELWPSPIG 63
           KKVKL+ I N+ +RK +F KRK G+ KK+ ELSTLCG++ACA+++SP+   PE WPS  G
Sbjct: 2   KKVKLSLIANERSRKTSFMKRKNGIFKKLHELSTLCGVQACALIYSPFIPVPESWPSREG 61

Query: 64  VQRVLSQFKKMPEMEQSKKMVNQETFLRQRIAKANDQLKKMRKDNREKEMTRLMFQSLTA 123
            ++V S+F +MP   +++KM++QET L +RI KA +QLK +  +NRE ++ R MF  +  
Sbjct: 62  AKKVASKFLEMPRTARTRKMMDQETHLMERITKAKEQLKNLAAENRELQVRRFMFDCVEG 121

Query: 124 AKGLHALNMLDLNDLTWLIDQNLKDITKRIDSLKK 159
               +  +  DL DL   ++  L  +  RI+S+K+
Sbjct: 122 KMSQYRYDAKDLQDLLSCMNLYLDQLNGRIESIKE 156

BLAST of Cp4.1LG01g17530 vs. TrEMBL
Match: A0A0A0LVS3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G560740 PE=4 SV=1)

HSP 1 Score: 378.6 bits (971), Expect = 5.1e-102
Identity = 200/225 (88.89%), Postives = 206/225 (91.56%), Query Frame = 1

Query: 1   MTRKKVKLAYIVNDSARKATFKKRKRGLMKKVSELSTLCGIEACAIVFSPYDAQPELWPS 60
           MTRKKVKLAYI NDSARKAT+KKRKRGLMKKVSELSTLCGIEACAI+FSPYD+QPELWPS
Sbjct: 1   MTRKKVKLAYIANDSARKATYKKRKRGLMKKVSELSTLCGIEACAIIFSPYDSQPELWPS 60

Query: 61  PIGVQRVLSQFKKMPEMEQSKKMVNQETFLRQRIAKANDQLKKMRKDNREKEMTRLMFQS 120
           PIGVQRVLSQFKKMPEMEQSKKMVNQETFLRQRIAKAN+QLKKMRKDNREKE+TRLMFQS
Sbjct: 61  PIGVQRVLSQFKKMPEMEQSKKMVNQETFLRQRIAKANEQLKKMRKDNREKEITRLMFQS 120

Query: 121 LTAAKGLHALNMLDLNDLTWLIDQNLKDITKRIDSLKKPPPHSQPHPHPHPHPQ-PPPPP 180
           LTAAKGLH LNMLDLNDL WLIDQNLKDIT RIDSLK  P  SQP        Q PP  P
Sbjct: 121 LTAAKGLHGLNMLDLNDLGWLIDQNLKDITIRIDSLKIKPSSSQPQAQVQAQAQAPPTQP 180

Query: 181 QTAAWLMELVSPQDQMGFVGDDMLLPFGDQTYSHNNAMWSNAFFP 225
           QTAAWLMELVSPQDQMGFVGDDMLLPFGDQTY+HNNAMWSNAFFP
Sbjct: 181 QTAAWLMELVSPQDQMGFVGDDMLLPFGDQTYNHNNAMWSNAFFP 225

BLAST of Cp4.1LG01g17530 vs. TrEMBL
Match: B9S273_RICCO (Mads box protein, putative OS=Ricinus communis GN=RCOM_1708810 PE=4 SV=1)

HSP 1 Score: 282.7 bits (722), Expect = 3.8e-73
Identity = 159/260 (61.15%), Postives = 192/260 (73.85%), Query Frame = 1

Query: 1   MTRKKVKLAYIVNDSARKATFKKRKRGLMKKVSELSTLCGIEACAIVFSPYDAQPELWPS 60
           MTRKKVKLAYI ND+ARKATFKKRK+GLMKKVSELSTLCG++ACAI++SPYDAQPE+WPS
Sbjct: 1   MTRKKVKLAYISNDTARKATFKKRKKGLMKKVSELSTLCGVDACAIIYSPYDAQPEVWPS 60

Query: 61  PIGVQRVLSQFKKMPEMEQSKKMVNQETFLRQRIAKANDQLKKMRKDNREKEMTRLMFQS 120
            I VQRVLSQFK MPEMEQSKKMVNQE+FLRQRI KAN+QLKK RKDNREKE+T++MFQS
Sbjct: 61  AIEVQRVLSQFKNMPEMEQSKKMVNQESFLRQRIGKANEQLKKQRKDNREKEVTQVMFQS 120

Query: 121 LTAAKGLHALNMLDLNDLTWLIDQNLKDITKRIDSLKK---------PPPHSQPHPHPHP 180
           LT  K L+ LNM+DLNDL W+I+Q LKDI K+++++ K         PPP     P P P
Sbjct: 121 LTG-KTLNNLNMMDLNDLGWIINQYLKDIYKKVETVSKEINRQVTAAPPP-----PSPPP 180

Query: 181 HPQPPP-----------PPQTAA----------------WLMELVSPQDQMGFVGDDMLL 225
              PPP           P Q AA                W+M+L++P + MGF+GD+M+L
Sbjct: 181 QQLPPPSGPAQAIAEVAPSQQAAERQAFEVNMEAMQRQQWIMDLINPHENMGFIGDEMML 240

BLAST of Cp4.1LG01g17530 vs. TrEMBL
Match: D7UAA8_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_14s0060g00300 PE=4 SV=1)

HSP 1 Score: 280.0 bits (715), Expect = 2.5e-72
Identity = 155/240 (64.58%), Postives = 182/240 (75.83%), Query Frame = 1

Query: 1   MTRKKVKLAYIVNDSARKATFKKRKRGLMKKVSELSTLCGIEACAIVFSPYDAQPELWPS 60
           MTRKKVKLAYI NDSARKATFKKRK+GLMKKVSELSTLCGI+ACAI++SPYD+QPE+WPS
Sbjct: 1   MTRKKVKLAYITNDSARKATFKKRKKGLMKKVSELSTLCGIDACAILYSPYDSQPEVWPS 60

Query: 61  PIGVQRVLSQFKKMPEMEQSKKMVNQETFLRQRIAKANDQLKKMRKDNREKEMTRLMFQS 120
           P+GVQRVL+ FKKMPEMEQSKKMVNQE+FLRQRIAK N+QLKK RKDNREKE+T++M+QS
Sbjct: 61  PLGVQRVLAHFKKMPEMEQSKKMVNQESFLRQRIAKGNEQLKKQRKDNREKEITQVMYQS 120

Query: 121 LTAAKGLHALNMLDLNDLTWLIDQNLKDITKRIDSLKKPPPHSQ---------------- 180
           LT  KGL  LN++DLNDL W+IDQNLKDI KRI+SL K                      
Sbjct: 121 LT-GKGLQNLNIVDLNDLGWMIDQNLKDIHKRIESLNKEAQSQAAAAAAAAAGQLIKTGG 180

Query: 181 PHPHPHPHPQPPPPPQTAAWLMELVSPQDQMGFVGDDMLLPFGDQTYSHNNAMWSNAFFP 225
                 P        Q   W ++LV+P +QMGF GDDM+LPFGD   +++NA+W N FFP
Sbjct: 181 KAQEEKPAFDSMDAIQRQQWFVDLVNPNEQMGFAGDDMMLPFGD---NNHNALWPNGFFP 236

BLAST of Cp4.1LG01g17530 vs. TrEMBL
Match: B9RFR5_RICCO (Mads box protein, putative OS=Ricinus communis GN=RCOM_1436810 PE=4 SV=1)

HSP 1 Score: 271.6 bits (693), Expect = 8.8e-70
Identity = 156/291 (53.61%), Postives = 190/291 (65.29%), Query Frame = 1

Query: 1   MTRKKVKLAYIVNDSARKATFKKRKRGLMKKVSELSTLCGIEACAIVFSPYDAQPELWPS 60
           MTRKKVKLAYI NDSARKATFKKRK+GL+KKV ELSTLCGIEAC I++SPYD QPE+WPS
Sbjct: 1   MTRKKVKLAYITNDSARKATFKKRKKGLIKKVDELSTLCGIEACVIIYSPYDTQPEVWPS 60

Query: 61  PIGVQRVLSQFKKMPEMEQSKKMVNQETFLRQRIAKANDQLKKMRKDNREKEMTRLMFQS 120
           P GVQ VLSQF+ MPEMEQSKKMVNQE+FL+QR+ KANDQLKK RK+NREKE+TR+MFQS
Sbjct: 61  PTGVQHVLSQFRNMPEMEQSKKMVNQESFLKQRLGKANDQLKKQRKENREKEVTRVMFQS 120

Query: 121 LTAAKGLHALNMLDLNDLTWLIDQNLKDITKRIDSLKK------------------PPPH 180
           L   + L  LNM+DLNDL+W+IDQ+LKDI K+ ++  K                  PPP 
Sbjct: 121 LIG-RTLTNLNMIDLNDLSWIIDQHLKDIRKKAETNNKEITSQMIAVAPPPPPPPPPPPP 180

Query: 181 SQPHPHPHPH---------PQPPPP---------PQTAA--------------------- 225
            QP P P P          P PPPP         P+T+                      
Sbjct: 181 PQPQPQPQPQLPLPPPPQLPSPPPPQLPSPPPFTPETSIFAGPIMEVAPFQEEAERQTFE 240

BLAST of Cp4.1LG01g17530 vs. TrEMBL
Match: V4SWL0_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10013728mg PE=4 SV=1)

HSP 1 Score: 268.1 bits (684), Expect = 9.8e-69
Identity = 149/241 (61.83%), Postives = 182/241 (75.52%), Query Frame = 1

Query: 1   MTRKKVKLAYIVNDSARKATFKKRKRGLMKKVSELSTLCGIEACAIVFSPYDAQPELWPS 60
           MTRKKVKLAYI NDSARKATFKKRK+GL+KKVSELSTLCGI+ACAI+FSPYD+QPE+WPS
Sbjct: 1   MTRKKVKLAYISNDSARKATFKKRKKGLLKKVSELSTLCGIDACAIIFSPYDSQPEVWPS 60

Query: 61  PIGVQRVLSQFKKMPEMEQSKKMVNQETFLRQRIAKANDQLKKMRKDNREKEMTRLMFQS 120
           P+GVQRVLSQFKKMPEMEQSKKMVNQ++FLRQRIAKAN+QLKK RKDNREKE+T++MFQS
Sbjct: 61  PLGVQRVLSQFKKMPEMEQSKKMVNQDSFLRQRIAKANEQLKKQRKDNREKEITQVMFQS 120

Query: 121 LTAAKGLHALNMLDLNDLTWLIDQNLKDITKRIDSLKK-----------------PPPHS 180
           LT  K L  LNM+DLNDL WLI+QNLK+I KR+++L K                      
Sbjct: 121 LT-GKALLNLNMMDLNDLGWLIEQNLKEICKRMETLSKGTSTHNSSNYGVVKNNGEASQQ 180

Query: 181 QPHPHPHPHPQPPPPPQTAAWLMELVSPQDQMGFVGDDMLLPFGDQTYSHNNAMWSNAFF 225
           Q               Q   WL++L++PQ+ MGF G++++ PFG+ ++S    +WSN F+
Sbjct: 181 QVDKSSGFDQMSMEAMQKQQWLLDLMNPQEHMGFGGEEIMYPFGESSHS---TLWSNPFY 237

BLAST of Cp4.1LG01g17530 vs. TAIR10
Match: AT5G48670.1 (AT5G48670.1 AGAMOUS-like 80)

HSP 1 Score: 204.1 bits (518), Expect = 8.8e-53
Identity = 103/157 (65.61%), Postives = 130/157 (82.80%), Query Frame = 1

Query: 1   MTRKKVKLAYIVNDSARKATFKKRKRGLMKKVSELSTLCGIEACAIVFSPYDAQPELWPS 60
           MTRKKVKLAYI NDS+RKATFKKRK+GLMKKV ELSTLCGI ACAI++SPYD  PE+WPS
Sbjct: 1   MTRKKVKLAYISNDSSRKATFKKRKKGLMKKVHELSTLCGITACAIIYSPYDTNPEVWPS 60

Query: 61  PIGVQRVLSQFKKMPEMEQSKKMVNQETFLRQRIAKANDQLKKMRKDNREKEMTRLMFQS 120
             GVQRV+S+F+ +PEM+Q KKMV+QE FL+QRIAKA + L++ RKD+RE EMT +MFQ 
Sbjct: 61  NSGVQRVVSEFRTLPEMDQHKKMVDQEGFLKQRIAKATETLRRQRKDSRELEMTEVMFQC 120

Query: 121 LTAAKGLHALNMLDLNDLTWLIDQNLKDITKRIDSLK 158
           L     +  LN++DLNDL ++I+Q LKD+ +RI+ L+
Sbjct: 121 LIGNMEMFHLNIVDLNDLGYMIEQYLKDVNRRIEILR 157

BLAST of Cp4.1LG01g17530 vs. TAIR10
Match: AT5G26630.1 (AT5G26630.1 MADS-box transcription factor family protein)

HSP 1 Score: 159.1 bits (401), Expect = 3.2e-39
Identity = 79/158 (50.00%), Postives = 115/158 (72.78%), Query Frame = 1

Query: 1   MTRKKVKLAYIVNDSARKATFKKRKRGLMKKVSELSTLCGIEACAIVFSPYDAQPELWPS 60
           MTR+KVK+ +I N++ARK+TFKKRK+GL+KK  EL  LCG+   A+V SPY+  PE+WPS
Sbjct: 1   MTRQKVKMTFIENETARKSTFKKRKKGLLKKAQELGILCGVPIFAVVNSPYELNPEVWPS 60

Query: 61  PIGVQRVLSQFKKMPEMEQSKKMVNQETFLRQRIAKANDQLKKMRKDNREKEMTRLMFQS 120
                +V+SQ+K M  M+++KKMVNQETFL+QRI KA +  KK+RK+N+E EM  +MF  
Sbjct: 61  REAANQVVSQWKTMSVMDKTKKMVNQETFLQQRITKATESWKKLRKENKELEMKNIMFDC 120

Query: 121 LTAAKGLHALNMLDLNDLTWLIDQNLKDITKRIDSLKK 159
           L+    + ++   +L D  ++I+Q LKD+ +RI+ LK+
Sbjct: 121 LSGKTLVSSIEKTELRDFGYVIEQQLKDVNRRIEILKR 158

BLAST of Cp4.1LG01g17530 vs. TAIR10
Match: AT3G05860.1 (AT3G05860.1 MADS-box transcription factor family protein)

HSP 1 Score: 139.4 bits (350), Expect = 2.7e-33
Identity = 77/151 (50.99%), Postives = 105/151 (69.54%), Query Frame = 1

Query: 1   MTRKKVKLAYIVNDSARKATFKKRKRGLMKKVSELSTLCGIEACAIVFSPYDAQPELWPS 60
           MTRKK+ L+YI N+S RKATF KRK+GL+KK+ ELS LCGIEACA+++SP+++ PE+WPS
Sbjct: 1   MTRKKLNLSYITNESMRKATFNKRKKGLVKKIHELSVLCGIEACAVIYSPFNSNPEVWPS 60

Query: 61  PIGVQRVLSQFKKMPEMEQSKKMVNQETFLRQRIAKANDQLKKMRKDNREKEMTRLMFQS 120
              V+ V+  F+ + ++EQ KKMV+ E F+RQ I+K  +   K   DN E+ M   MFQ 
Sbjct: 61  NSEVKNVMENFEMLTKLEQEKKMVSHEGFIRQNISKTMESNNKKMIDNAERTMKEAMFQ- 120

Query: 121 LTAAKGLHALNMLDLN--DLTWLIDQNLKDI 150
           L + KG   LN+ D N  DL   IDQ LK++
Sbjct: 121 LLSGKG-EKLNLTDRNREDLCKYIDQYLKEL 149

BLAST of Cp4.1LG01g17530 vs. TAIR10
Match: AT1G65300.1 (AT1G65300.1 AGAMOUS-like 38)

HSP 1 Score: 138.3 bits (347), Expect = 5.9e-33
Identity = 75/167 (44.91%), Postives = 116/167 (69.46%), Query Frame = 1

Query: 3   RKKVKLAYIVNDSARKATFKKRKRGLMKKVSELSTLCGIEACAIVFSPYDAQPELWPSPI 62
           ++K+KL+ I N  +RK TF KRK+G+ KK++EL TLCG+EACA+V+SP+++ PE WPS  
Sbjct: 2   KRKMKLSLIENSVSRKTTFTKRKKGMTKKLTELVTLCGVEACAVVYSPFNSIPEAWPSRE 61

Query: 63  GVQRVLSQFKKMPEMEQSKKMVNQETFLRQRIAKANDQLKKMRKDNREKEMTRLMFQSLT 122
           GV+ V+S+F ++  ++++KKMV+QETF+ QRIAK  +QL+K+R +N   ++  LMF  L 
Sbjct: 62  GVEDVVSKFMELSVLDRTKKMVDQETFISQRIAKEKEQLQKLRDENHNSQIRELMFGCLK 121

Query: 123 AAKGLHALNMLDLNDLTWLIDQNLKDITKRIDSLKKPPPHSQPHPHP 170
               ++ L+  DL DL+  ID+ L  +T+RI+ L +    S   P P
Sbjct: 122 GETNVYNLDGRDLQDLSLYIDKYLNGLTRRIEILIENGESSSSLPLP 168

BLAST of Cp4.1LG01g17530 vs. TAIR10
Match: AT1G65330.1 (AT1G65330.1 MADS-box transcription factor family protein)

HSP 1 Score: 136.0 bits (341), Expect = 2.9e-32
Identity = 75/167 (44.91%), Postives = 114/167 (68.26%), Query Frame = 1

Query: 3   RKKVKLAYIVNDSARKATFKKRKRGLMKKVSELSTLCGIEACAIVFSPYDAQPELWPSPI 62
           R K+KL++I NDS RK TF KRK+G++KK +EL TLCG++ACA++ SPY++  E WPS  
Sbjct: 2   RGKMKLSFIENDSVRKTTFTKRKKGMLKKFNELVTLCGVDACAVIRSPYNSIQEPWPSRE 61

Query: 63  GVQRVLSQFKKMPEMEQSKKMVNQETFLRQRIAKANDQLKKMRKDNREKEMTRLMFQSLT 122
           GV+ V+S+F +   ++++KKMV+QETFLRQRIAK  ++L+K+R +NR  ++  LMF  L 
Sbjct: 62  GVEEVMSKFMEFSVLDRTKKMVDQETFLRQRIAKETERLQKLRDENRNSQIRDLMFGCLK 121

Query: 123 AAKGLHALNMLDLNDLTWLIDQNLKDITKRIDSLKKPPPHSQPHPHP 170
               +  L+  DL DL   +++ L  + +R++ LK+    S   P P
Sbjct: 122 GEVDVSHLHGRDLLDLNVFLNKYLNGVIRRVEILKENGESSSSVPPP 168

BLAST of Cp4.1LG01g17530 vs. NCBI nr
Match: gi|659099266|ref|XP_008450513.1| (PREDICTED: agamous-like MADS-box protein AGL80 [Cucumis melo])

HSP 1 Score: 380.2 bits (975), Expect = 2.5e-102
Identity = 201/226 (88.94%), Postives = 207/226 (91.59%), Query Frame = 1

Query: 1   MTRKKVKLAYIVNDSARKATFKKRKRGLMKKVSELSTLCGIEACAIVFSPYDAQPELWPS 60
           MTRKKVKLAYI NDSARKAT+KKRKRGLMKKVSELSTLCGIEACAI+FSPYD+QPELWPS
Sbjct: 1   MTRKKVKLAYIANDSARKATYKKRKRGLMKKVSELSTLCGIEACAIIFSPYDSQPELWPS 60

Query: 61  PIGVQRVLSQFKKMPEMEQSKKMVNQETFLRQRIAKANDQLKKMRKDNREKEMTRLMFQS 120
           PIGVQRVLSQFKKMPEMEQSKKMVNQETFLRQRIAKAN+QLKKMRKDNREKE+TRLMFQS
Sbjct: 61  PIGVQRVLSQFKKMPEMEQSKKMVNQETFLRQRIAKANEQLKKMRKDNREKEITRLMFQS 120

Query: 121 LTAAKGLHALNMLDLNDLTWLIDQNLKDITKRIDSLKKPPPHSQPHPHPHPHPQPPP--P 180
           LTAAKGLH LNMLDLNDL WLIDQNLKDIT RIDSLKKP   S P P      Q PP   
Sbjct: 121 LTAAKGLHGLNMLDLNDLGWLIDQNLKDITIRIDSLKKP---SLPQPQAQAQAQAPPTTQ 180

Query: 181 PQTAAWLMELVSPQDQMGFVGDDMLLPFGDQTYSHNNAMWSNAFFP 225
           PQTAAWLMELVSPQDQMGFVGDDMLLPFGDQTY+HNNAMWSNAFFP
Sbjct: 181 PQTAAWLMELVSPQDQMGFVGDDMLLPFGDQTYNHNNAMWSNAFFP 223

BLAST of Cp4.1LG01g17530 vs. NCBI nr
Match: gi|449435956|ref|XP_004135760.1| (PREDICTED: agamous-like MADS-box protein AGL80 [Cucumis sativus])

HSP 1 Score: 378.6 bits (971), Expect = 7.4e-102
Identity = 200/225 (88.89%), Postives = 206/225 (91.56%), Query Frame = 1

Query: 1   MTRKKVKLAYIVNDSARKATFKKRKRGLMKKVSELSTLCGIEACAIVFSPYDAQPELWPS 60
           MTRKKVKLAYI NDSARKAT+KKRKRGLMKKVSELSTLCGIEACAI+FSPYD+QPELWPS
Sbjct: 1   MTRKKVKLAYIANDSARKATYKKRKRGLMKKVSELSTLCGIEACAIIFSPYDSQPELWPS 60

Query: 61  PIGVQRVLSQFKKMPEMEQSKKMVNQETFLRQRIAKANDQLKKMRKDNREKEMTRLMFQS 120
           PIGVQRVLSQFKKMPEMEQSKKMVNQETFLRQRIAKAN+QLKKMRKDNREKE+TRLMFQS
Sbjct: 61  PIGVQRVLSQFKKMPEMEQSKKMVNQETFLRQRIAKANEQLKKMRKDNREKEITRLMFQS 120

Query: 121 LTAAKGLHALNMLDLNDLTWLIDQNLKDITKRIDSLKKPPPHSQPHPHPHPHPQ-PPPPP 180
           LTAAKGLH LNMLDLNDL WLIDQNLKDIT RIDSLK  P  SQP        Q PP  P
Sbjct: 121 LTAAKGLHGLNMLDLNDLGWLIDQNLKDITIRIDSLKIKPSSSQPQAQVQAQAQAPPTQP 180

Query: 181 QTAAWLMELVSPQDQMGFVGDDMLLPFGDQTYSHNNAMWSNAFFP 225
           QTAAWLMELVSPQDQMGFVGDDMLLPFGDQTY+HNNAMWSNAFFP
Sbjct: 181 QTAAWLMELVSPQDQMGFVGDDMLLPFGDQTYNHNNAMWSNAFFP 225

BLAST of Cp4.1LG01g17530 vs. NCBI nr
Match: gi|255558128|ref|XP_002520092.1| (PREDICTED: agamous-like MADS-box protein AGL80 [Ricinus communis])

HSP 1 Score: 282.7 bits (722), Expect = 5.5e-73
Identity = 159/260 (61.15%), Postives = 192/260 (73.85%), Query Frame = 1

Query: 1   MTRKKVKLAYIVNDSARKATFKKRKRGLMKKVSELSTLCGIEACAIVFSPYDAQPELWPS 60
           MTRKKVKLAYI ND+ARKATFKKRK+GLMKKVSELSTLCG++ACAI++SPYDAQPE+WPS
Sbjct: 1   MTRKKVKLAYISNDTARKATFKKRKKGLMKKVSELSTLCGVDACAIIYSPYDAQPEVWPS 60

Query: 61  PIGVQRVLSQFKKMPEMEQSKKMVNQETFLRQRIAKANDQLKKMRKDNREKEMTRLMFQS 120
            I VQRVLSQFK MPEMEQSKKMVNQE+FLRQRI KAN+QLKK RKDNREKE+T++MFQS
Sbjct: 61  AIEVQRVLSQFKNMPEMEQSKKMVNQESFLRQRIGKANEQLKKQRKDNREKEVTQVMFQS 120

Query: 121 LTAAKGLHALNMLDLNDLTWLIDQNLKDITKRIDSLKK---------PPPHSQPHPHPHP 180
           LT  K L+ LNM+DLNDL W+I+Q LKDI K+++++ K         PPP     P P P
Sbjct: 121 LTG-KTLNNLNMMDLNDLGWIINQYLKDIYKKVETVSKEINRQVTAAPPP-----PSPPP 180

Query: 181 HPQPPP-----------PPQTAA----------------WLMELVSPQDQMGFVGDDMLL 225
              PPP           P Q AA                W+M+L++P + MGF+GD+M+L
Sbjct: 181 QQLPPPSGPAQAIAEVAPSQQAAERQAFEVNMEAMQRQQWIMDLINPHENMGFIGDEMML 240

BLAST of Cp4.1LG01g17530 vs. NCBI nr
Match: gi|225450435|ref|XP_002279507.1| (PREDICTED: agamous-like MADS-box protein AGL80 [Vitis vinifera])

HSP 1 Score: 280.0 bits (715), Expect = 3.6e-72
Identity = 155/240 (64.58%), Postives = 182/240 (75.83%), Query Frame = 1

Query: 1   MTRKKVKLAYIVNDSARKATFKKRKRGLMKKVSELSTLCGIEACAIVFSPYDAQPELWPS 60
           MTRKKVKLAYI NDSARKATFKKRK+GLMKKVSELSTLCGI+ACAI++SPYD+QPE+WPS
Sbjct: 1   MTRKKVKLAYITNDSARKATFKKRKKGLMKKVSELSTLCGIDACAILYSPYDSQPEVWPS 60

Query: 61  PIGVQRVLSQFKKMPEMEQSKKMVNQETFLRQRIAKANDQLKKMRKDNREKEMTRLMFQS 120
           P+GVQRVL+ FKKMPEMEQSKKMVNQE+FLRQRIAK N+QLKK RKDNREKE+T++M+QS
Sbjct: 61  PLGVQRVLAHFKKMPEMEQSKKMVNQESFLRQRIAKGNEQLKKQRKDNREKEITQVMYQS 120

Query: 121 LTAAKGLHALNMLDLNDLTWLIDQNLKDITKRIDSLKKPPPHSQ---------------- 180
           LT  KGL  LN++DLNDL W+IDQNLKDI KRI+SL K                      
Sbjct: 121 LT-GKGLQNLNIVDLNDLGWMIDQNLKDIHKRIESLNKEAQSQAAAAAAAAAGQLIKTGG 180

Query: 181 PHPHPHPHPQPPPPPQTAAWLMELVSPQDQMGFVGDDMLLPFGDQTYSHNNAMWSNAFFP 225
                 P        Q   W ++LV+P +QMGF GDDM+LPFGD   +++NA+W N FFP
Sbjct: 181 KAQEEKPAFDSMDAIQRQQWFVDLVNPNEQMGFAGDDMMLPFGD---NNHNALWPNGFFP 236

BLAST of Cp4.1LG01g17530 vs. NCBI nr
Match: gi|1009116500|ref|XP_015874807.1| (PREDICTED: agamous-like MADS-box protein AGL80 [Ziziphus jujuba])

HSP 1 Score: 276.9 bits (707), Expect = 3.0e-71
Identity = 160/249 (64.26%), Postives = 184/249 (73.90%), Query Frame = 1

Query: 1   MTRKKVKLAYIVNDSARKATFKKRKRGLMKKVSELSTLCGIEACAIVFSPYDAQPELWPS 60
           MTRKKVKLAYI NDSARKATFKKRK+GL+KKV ELSTLC ++ACAI++SPYD QPEL+PS
Sbjct: 1   MTRKKVKLAYISNDSARKATFKKRKKGLVKKVGELSTLCDVDACAIIYSPYDTQPELFPS 60

Query: 61  PIGVQRVLSQFKKMPEMEQSKKMVNQETFLRQRIAKANDQLKKMRKDNREKEMTRLMFQS 120
           P+GVQRVLS+FKKMPEMEQSKKMVNQE+FLRQRIAKAN+QLKK RKDNREKEMTR+MFQS
Sbjct: 61  PLGVQRVLSKFKKMPEMEQSKKMVNQESFLRQRIAKANEQLKKQRKDNREKEMTRVMFQS 120

Query: 121 LTAAKGLHALNMLDLNDLTWLIDQNLKDITKRIDSLKKPPPHSQPHPHPHP--------- 180
           LT  KGL  LNM+DLNDL WLIDQNLKDI KRI+S  K    SQ H    P         
Sbjct: 121 LTG-KGLQGLNMMDLNDLGWLIDQNLKDINKRIES-HKAEASSQKHDVAAPGMSSAADGM 180

Query: 181 --------HPQPPPPP--------QTAAWLMELVSPQDQMGFVGDDMLLPFGDQTYSHNN 225
                         P         Q   W M+L++PQ+ +GF GD+M+LPFGD    ++N
Sbjct: 181 ARSGENGSQAMAEKPAFEVNVETMQRQQWFMDLMNPQEGLGFGGDEMILPFGDH---NHN 240

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
AGL80_ARATH1.6e-5165.61Agamous-like MADS-box protein AGL80 OS=Arabidopsis thaliana GN=AGL80 PE=1 SV=1[more]
PHE2_ARATH1.0e-3144.91MADS-box transcription factor PHERES 2 OS=Arabidopsis thaliana GN=PHE2 PE=1 SV=1[more]
PHE1_ARATH5.2e-3144.91MADS-box transcription factor PHERES 1 OS=Arabidopsis thaliana GN=PHE1 PE=1 SV=1[more]
AGL36_ARATH2.6e-3044.52Agamous-like MADS-box protein AGL36 OS=Arabidopsis thaliana GN=AGL36 PE=1 SV=1[more]
AGL90_ARATH7.5e-3043.23Agamous-like MADS-box protein AGL90 OS=Arabidopsis thaliana GN=AGL90 PE=1 SV=2[more]
Match NameE-valueIdentityDescription
A0A0A0LVS3_CUCSA5.1e-10288.89Uncharacterized protein OS=Cucumis sativus GN=Csa_1G560740 PE=4 SV=1[more]
B9S273_RICCO3.8e-7361.15Mads box protein, putative OS=Ricinus communis GN=RCOM_1708810 PE=4 SV=1[more]
D7UAA8_VITVI2.5e-7264.58Putative uncharacterized protein OS=Vitis vinifera GN=VIT_14s0060g00300 PE=4 SV=... [more]
B9RFR5_RICCO8.8e-7053.61Mads box protein, putative OS=Ricinus communis GN=RCOM_1436810 PE=4 SV=1[more]
V4SWL0_9ROSI9.8e-6961.83Uncharacterized protein OS=Citrus clementina GN=CICLE_v10013728mg PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT5G48670.18.8e-5365.61 AGAMOUS-like 80[more]
AT5G26630.13.2e-3950.00 MADS-box transcription factor family protein[more]
AT3G05860.12.7e-3350.99 MADS-box transcription factor family protein[more]
AT1G65300.15.9e-3344.91 AGAMOUS-like 38[more]
AT1G65330.12.9e-3244.91 MADS-box transcription factor family protein[more]
Match NameE-valueIdentityDescription
gi|659099266|ref|XP_008450513.1|2.5e-10288.94PREDICTED: agamous-like MADS-box protein AGL80 [Cucumis melo][more]
gi|449435956|ref|XP_004135760.1|7.4e-10288.89PREDICTED: agamous-like MADS-box protein AGL80 [Cucumis sativus][more]
gi|255558128|ref|XP_002520092.1|5.5e-7361.15PREDICTED: agamous-like MADS-box protein AGL80 [Ricinus communis][more]
gi|225450435|ref|XP_002279507.1|3.6e-7264.58PREDICTED: agamous-like MADS-box protein AGL80 [Vitis vinifera][more]
gi|1009116500|ref|XP_015874807.1|3.0e-7164.26PREDICTED: agamous-like MADS-box protein AGL80 [Ziziphus jujuba][more]
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0046983protein dimerization activity
GO:0003677DNA binding
Vocabulary: INTERPRO
TermDefinition
IPR002100TF_MADSbox
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
cellular_component GO:0005634 nucleus
molecular_function GO:0003677 DNA binding
molecular_function GO:0046983 protein dimerization activity

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG01g17530.1Cp4.1LG01g17530.1mRNA


Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002100Transcription factor, MADS-boxPRINTSPR00404MADSDOMAINcoord: 3..23
score: 2.7E-10coord: 38..59
score: 2.7E-10coord: 23..38
score: 2.7
IPR002100Transcription factor, MADS-boxPFAMPF00319SRF-TFcoord: 11..51
score: 3.5
IPR002100Transcription factor, MADS-boxSMARTSM00432madsneu2coord: 1..60
score: 3.8
IPR002100Transcription factor, MADS-boxPROFILEPS50066MADS_BOX_2coord: 1..49
score: 17
IPR002100Transcription factor, MADS-boxunknownSSF55455SRF-likecoord: 2..95
score: 4.45
NoneNo IPR availableunknownCoilCoilcoord: 87..114
scor
NoneNo IPR availablePANTHERPTHR11945MADS BOX PROTEINcoord: 2..158
score: 3.4E
NoneNo IPR availablePANTHERPTHR11945:SF183AGAMOUS-LIKE MADS-BOX PROTEIN AGL80-RELATEDcoord: 2..158
score: 3.4E

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None