Cp4.1LG01g17520 (gene) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG01g17520
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	GRIP and coiled-coil domain-containing protein
Location	Cp4.1LG01 : 13589571 .. 13591136 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TGTAACGATGAAAAATAATAGAGAACTAAAAGGAATGGTATATCATCATCCTCATCCTCATCAATAATTCCAGGCAAGATCATGTGACAAAAAGTGTGTCAGTGACAGACTGGTTTTGGCTGCTTCTTCTCTTTACTCTTCTACTGACTTGGTCGAGCTTTTCCGAGTTCTTCCCGACCGCCTCATTCCTTTCCTTCATTTCTTCATCTTCTTTCAATCTCCATCCTTAACCACTCCGACAGCCGCCGCTTTGTTCTTCAATCCACAATCATTATGGCTACATCCGATGAGGTGAGTTTTTCCTTAATCATTAATGGATGTGAAGATCGTTTGTTCATGTTCTTAGATTCTTGATCAATACCCACTTCTTAGTTTCTTCTATTTTTAACTTTAAACACCCTTCTCTGTGATATGTTTCATACTTCATTTGGGTAAGAGATCATTACCAACATCATGATAGATTAGAACAGAGCTATGGTTGATTCAATCTGTCAATTCCTTCACCAATATGTTATGGATTCTTACAGTTAATTAAGGCAATGGATGAGCCTCCTGTTTCTGAGAGGCCATCGAATGAACCCATTGGAGGAGAAGCAACAGAGCTGCCAGTTACTCCGTTCATGGAAAATGGTATAAAGGAGGAGTTCGATGCAGCTGACAATAAAGGAGAAGTGATACAAAAAGAGAGTCTGGAGGTTCCACAAAATGTAGAAGAACAAGCATCAGAGATTGTGGGCCTTGTTCCAAAAGCACAAGACGAATCATCAGTAATGGCAGAGTGTGGCAAGGGTCCAGCAGACAAGGAAGCAGAGAACAATGTTCCAGAACAACCTGATGAACCACAAAACAAAGAAGCTGAAGCGATTGAGGTTGTTCCAATGGAAGAAATGATTGGAACAGCTGAATCTCCAACACAACAGGAGTTTGTAAGTGCAGAGAAAGAGGCAAGTTGTGTTGTGGCAGAAGACACTACTGAATCCATTACAGCTTCCAAGAACAAAGAGCAGCAAAATGAAGAACATCCTGTGGTAGCAGGCAAGTCATTAGTTGATCTGATAGCACAAACCAAGATAGAAGAACCCCAAGTAGCAGGGCTTGAAGCTGCCAATGTACCTGAGGTGGAAGTAAAAGATGAACAAATTGTGAGCACAAAGGGAGAAGTGCCATCAAACCCCACTCATAAGCATTCGCACAATCTCTTATCCAAACTAAAACACTCATTGGTGAAGGCAAGGAAGGCCATCATTGGGAAGTCACCCACCTCAAAAACTCTTTCCTCCCAACCAAAGGATGATATTAAACTCAAGTGATGCTCTGCACTTAATAGCCAGATTCAGAGTTAAGTACTTATCAGAATATATGTTGTGAGGATTGGATTTTTTTTTGCATAGTTTCTTATAGTTGCGATGTAAAATTTGATATTATACCGTCATGTGTACATCGATTTCAAATTTGTGGATTTTGTGTGTGAAGTGATAAAGGTATTACTTAGCGTGTTGTCTGTGGCTACATGTTGGATGTTTCAATCATGTTTGTTCTCTGTTGGTACGAGGCCTTTTAGGGAAG

mRNA sequence

TGTAACGATGAAAAATAATAGAGAACTAAAAGGAATGGTATATCATCATCCTCATCCTCATCAATAATTCCAGGCAAGATCATGTGACAAAAAGTGTGTCAGTGACAGACTGGTTTTGGCTGCTTCTTCTCTTTACTCTTCTACTGACTTGGTCGAGCTTTTCCGAGTTCTTCCCGACCGCCTCATTCCTTTCCTTCATTTCTTCATCTTCTTTCAATCTCCATCCTTAACCACTCCGACAGCCGCCGCTTTGTTCTTCAATCCACAATCATTATGGCTACATCCGATGAGTTAATTAAGGCAATGGATGAGCCTCCTGTTTCTGAGAGGCCATCGAATGAACCCATTGGAGGAGAAGCAACAGAGCTGCCAGTTACTCCGTTCATGGAAAATGGTATAAAGGAGGAGTTCGATGCAGCTGACAATAAAGGAGAAGTGATACAAAAAGAGAGTCTGGAGGTTCCACAAAATGTAGAAGAACAAGCATCAGAGATTGTGGGCCTTGTTCCAAAAGCACAAGACGAATCATCAGTAATGGCAGAGTGTGGCAAGGGTCCAGCAGACAAGGAAGCAGAGAACAATGTTCCAGAACAACCTGATGAACCACAAAACAAAGAAGCTGAAGCGATTGAGGTTGTTCCAATGGAAGAAATGATTGGAACAGCTGAATCTCCAACACAACAGGAGTTTGTAAGTGCAGAGAAAGAGGCAAGTTGTGTTGTGGCAGAAGACACTACTGAATCCATTACAGCTTCCAAGAACAAAGAGCAGCAAAATGAAGAACATCCTGTGGTAGCAGGCAAGTCATTAGTTGATCTGATAGCACAAACCAAGATAGAAGAACCCCAAGTAGCAGGGCTTGAAGCTGCCAATGTACCTGAGGTGGAAGTAAAAGATGAACAAATTGTGAGCACAAAGGGAGAAGTGCCATCAAACCCCACTCATAAGCATTCGCACAATCTCTTATCCAAACTAAAACACTCATTGGTGAAGGCAAGGAAGGCCATCATTGGGAAGTCACCCACCTCAAAAACTCTTTCCTCCCAACCAAAGGATGATATTAAACTCAAGTGATGCTCTGCACTTAATAGCCAGATTCAGAGTTAAGTACTTATCAGAATATATGTTGTGAGGATTGGATTTTTTTTTGCATAGTTTCTTATAGTTGCGATGTAAAATTTGATATTATACCGTCATGTGTACATCGATTTCAAATTTGTGGATTTTGTGTGTGAAGTGATAAAGGTATTACTTAGCGTGTTGTCTGTGGCTACATGTTGGATGTTTCAATCATGTTTGTTCTCTGTTGGTACGAGGCCTTTTAGGGAAG

Coding sequence (CDS)

ATGGCTACATCCGATGAGTTAATTAAGGCAATGGATGAGCCTCCTGTTTCTGAGAGGCCATCGAATGAACCCATTGGAGGAGAAGCAACAGAGCTGCCAGTTACTCCGTTCATGGAAAATGGTATAAAGGAGGAGTTCGATGCAGCTGACAATAAAGGAGAAGTGATACAAAAAGAGAGTCTGGAGGTTCCACAAAATGTAGAAGAACAAGCATCAGAGATTGTGGGCCTTGTTCCAAAAGCACAAGACGAATCATCAGTAATGGCAGAGTGTGGCAAGGGTCCAGCAGACAAGGAAGCAGAGAACAATGTTCCAGAACAACCTGATGAACCACAAAACAAAGAAGCTGAAGCGATTGAGGTTGTTCCAATGGAAGAAATGATTGGAACAGCTGAATCTCCAACACAACAGGAGTTTGTAAGTGCAGAGAAAGAGGCAAGTTGTGTTGTGGCAGAAGACACTACTGAATCCATTACAGCTTCCAAGAACAAAGAGCAGCAAAATGAAGAACATCCTGTGGTAGCAGGCAAGTCATTAGTTGATCTGATAGCACAAACCAAGATAGAAGAACCCCAAGTAGCAGGGCTTGAAGCTGCCAATGTACCTGAGGTGGAAGTAAAAGATGAACAAATTGTGAGCACAAAGGGAGAAGTGCCATCAAACCCCACTCATAAGCATTCGCACAATCTCTTATCCAAACTAAAACACTCATTGGTGAAGGCAAGGAAGGCCATCATTGGGAAGTCACCCACCTCAAAAACTCTTTCCTCCCAACCAAAGGATGATATTAAACTCAAGTGA

Protein sequence

MATSDELIKAMDEPPVSERPSNEPIGGEATELPVTPFMENGIKEEFDAADNKGEVIQKESLEVPQNVEEQASEIVGLVPKAQDESSVMAECGKGPADKEAENNVPEQPDEPQNKEAEAIEVVPMEEMIGTAESPTQQEFVSAEKEASCVVAEDTTESITASKNKEQQNEEHPVVAGKSLVDLIAQTKIEEPQVAGLEAANVPEVEVKDEQIVSTKGEVPSNPTHKHSHNLLSKLKHSLVKARKAIIGKSPTSKTLSSQPKDDIKLK

Homology

[Close]

BLAST of Cp4.1LG01g17520 vs. TrEMBL
Match: A0A0A0LYU4_CUCSA (GRIP and coiled-coil domain-containing protein OS=Cucumis sativus GN=Csa_1G560750 PE=4 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 2.4e-13
Identity = 85/239 (35.56%), Postives = 124/239 (51.88%), Query Frame = 1


Query: 68  EEQASEIVGLVPKAQDESSVMAECGKGPADKEAENNVPEQPDEPQNKEAEAIEVVPMEEM 127
           EEQ  E         D+   + + G+   +  A +  P    E + KE+  I+VV     
Sbjct: 142 EEQCKE-------QSDKQDSVYQKGQPSVNLVAPDIPPHDVKEDEKKESGNIDVVAQ--- 201

Query: 128 IGTAESPTQQEFVSAEKEASCVV--AEDTT----ESITASKNK--EQQNEEHPVVAGKSL 187
           +   E+P  ++     KE       A++ T    + IT  + +   +  E   VV GKS+
Sbjct: 202 LSVEEAPAMEKVGEENKEKGMKTEKADEATHENIQKITLPREEVAPRDYETDVVVEGKSI 261

Query: 188 VD--------LIAQTKIEEP----QVAGLEAANVP-----------EVEVKDEQIV---- 247
            D        LIA+TK++E     ++A +E A+V            E+EVKD++ V    
Sbjct: 262 DDQKAGKVANLIAETKVDESITDEKLAPVETASVQVNETPKEPQELELEVKDKENVRAEA 321

Query: 248 -----STKGEVPSNPTHKHSHNLLSKLKHSLVKARKAIIGKSPTSKTLSSQPKDDIKLK 267
                + K EVPS P+HKHSHN+LSK+K SLVKA+KAIIGKSP+SKTLSS+ +DDIK+K
Sbjct: 322 EVPKVNDKKEVPSKPSHKHSHNILSKVKQSLVKAKKAIIGKSPSSKTLSSEARDDIKVK 370

[Close]

BLAST of Cp4.1LG01g17520 vs. TrEMBL
Match: A0A067JHB8_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23159 PE=4 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 2.1e-09
Identity = 79/243 (32.51%), Postives = 121/243 (49.79%), Query Frame = 1


Query: 43  KEEFDAADNKGEVIQKESLEVPQNVEEQASEIVGLVPKAQDESSVMAECGKGPAD---KE 102
           KEE   + ++  V+ K+ +E      +  S +  +  K   E       G    +   KE
Sbjct: 648 KEEKPISVSEQVVLAKQEVETDSKKSKVESSLPDVAEKTGVEDGDKGSNGTVVVESPSKE 707

Query: 103 AENNVPEQPDEPQNKE-----------AEAIEVVPMEEMIGTAESPTQQEFVSAEKEASC 162
           AE  + +  ++ Q K            A+ I V  ++E++   +  T++ FV  +KE S 
Sbjct: 708 AEVEIKKSGEDKQEKTIKAEGENVQEVAQPINVDHIKEVVSNVQV-TERSFVEDKKEES- 767

Query: 163 VVAEDTTESITASKNKEQQ-NEEHPVVAGKSLVDLIAQTKIEEPQVAG---LEAANVPEV 222
              E+T   +  SK+ E++ +E  P V      D  +Q K EE    G   LE  NV E+
Sbjct: 768 -TREETLALVETSKDVEEKLDEATPAVTEP---DKESQVKEEESAKTGEDKLEKENVKEI 827

Query: 223 EVKD-EQIVSTKGEVPSNPTHKHSHNLLSKLKHSLVKARKAIIGKSPTSKTLSSQPKDDI 267
              D E       +V + PT K S+N+L+K+K SLVKA+KAIIGKSP+SKTLSS  KDD+
Sbjct: 828 SKSDAETAQDLPKQVKAKPTQKQSNNILTKVKQSLVKAKKAIIGKSPSSKTLSSDTKDDV 884

[Close]

BLAST of Cp4.1LG01g17520 vs. TrEMBL
Match: U5GCT7_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0005s00350g PE=4 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 8.7e-08
Identity = 81/257 (31.52%), Postives = 121/257 (47.08%), Query Frame = 1


Query: 18  ERPSNEPIGGEATELPVTPFM----ENGIKEEFDAADNKGEVIQKESLEVPQNVEEQASE 77
           E    E  G +  E+PV   +    + G ++E     ++GE I  E+L+     EE A  
Sbjct: 527 EDEKREAEGTDPVEVPVKEVVVEAEKGGEEKEAQTTKDEGENIASETLK-----EELAHP 586

Query: 78  I-VGLVPKAQDESSVMAECGKGPADKEAENNVPEQPDEPQNKEAEAIEVVPMEEMIGTAE 137
           I V  V  A   + V  +  +G  +K  EN VP   D+              EE+    E
Sbjct: 587 IKVEDVSDAVSNAEVTEKSFEG--EKTVENVVPAVEDKK-------------EEIPAGKE 646

Query: 138 SPTQQEFVSAEKEASCVVAEDTTESITASKNKEQQNEEHPVVAGKSLVDLIAQTKIEEPQ 197
           +   Q+      EA+ + +E   ES       E + EE    + K+  +   Q K++E  
Sbjct: 647 TEKDQKIEGKLDEATTIGSETVKES--QDSGLEAKEEE----SAKNNKENSEQEKVDE-- 706

Query: 198 VAGLEAANVPEVEVKDEQIVSTKG----EVPSNPTHKHSHNLLSKLKHSLVKARKAIIGK 257
           +A  +  N+     KD   +        EVP+ PT KHS+N+L+K+K SLVKA+KAIIGK
Sbjct: 707 IAKSDTQNLEPSTTKDADDIKVSQDLPREVPAKPTQKHSNNILTKVKQSLVKAKKAIIGK 755

Query: 258 SPTSKTLSSQPKDDIKL 266
           SPT KT+SS  K D+K+
Sbjct: 767 SPTPKTVSSDTKGDVKV 755

[Close]

BLAST of Cp4.1LG01g17520 vs. TrEMBL
Match: A0A072VNB6_MEDTR (Uncharacterized protein OS=Medicago truncatula GN=MTR_1g084990 PE=4 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 1.5e-07
Identity = 60/188 (31.91%), Postives = 98/188 (52.13%), Query Frame = 1


Query: 79   PKAQDESSVMAECGKGPADKEAENNVPEQPDEPQNKEAEAIEVVPMEEMIGTAESPTQQE 138
            P  + E  ++ E GK    KE      ++  EP+   ++A++V   E+      +    E
Sbjct: 961  PSPEVEEKIVVEDGK----KEVVVAAEDEKKEPE--ASDAVQVSSREQNEAKTATIEAGE 1020

Query: 139  FVSAEKEASCVVAEDTTESITASKNKEQQNEEHPVVAGKSLVDLIAQTKIEEPQVAGLEA 198
              +  +E S  V E   E++ +   K +++EE  +  G   VD + + +IEEP    +E+
Sbjct: 1021 TETKVEEISKAVNEPVRETLAS---KFEKDEEETIQNG---VDNLEKERIEEPVKTEVES 1080

Query: 199  ANVPEVEVKDEQIVSTKGEVPSNPTHKHSHNLLSKLKHSLVKARKAIIGKSPTSKTLSSQ 258
                +     + +     E P+ P  K S+N+++K+K SLVKA+KAI GKSP+SK LSS 
Sbjct: 1081 TKENDTTTISKDLPK---ETPAKPAQKQSNNIIAKVKQSLVKAKKAITGKSPSSKNLSSD 1133

Query: 259  PKDDIKLK 267
            PK DIK+K
Sbjct: 1141 PKGDIKVK 1133

[Close]

BLAST of Cp4.1LG01g17520 vs. TrEMBL
Match: G7IAC6_MEDTR (Uncharacterized protein OS=Medicago truncatula GN=MTR_1g084990 PE=4 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 1.5e-07
Identity = 60/188 (31.91%), Postives = 98/188 (52.13%), Query Frame = 1


Query: 79   PKAQDESSVMAECGKGPADKEAENNVPEQPDEPQNKEAEAIEVVPMEEMIGTAESPTQQE 138
            P  + E  ++ E GK    KE      ++  EP+   ++A++V   E+      +    E
Sbjct: 960  PSPEVEEKIVVEDGK----KEVVVAAEDEKKEPE--ASDAVQVSSREQNEAKTATIEAGE 1019

Query: 139  FVSAEKEASCVVAEDTTESITASKNKEQQNEEHPVVAGKSLVDLIAQTKIEEPQVAGLEA 198
              +  +E S  V E   E++ +   K +++EE  +  G   VD + + +IEEP    +E+
Sbjct: 1020 TETKVEEISKAVNEPVRETLAS---KFEKDEEETIQNG---VDNLEKERIEEPVKTEVES 1079

Query: 199  ANVPEVEVKDEQIVSTKGEVPSNPTHKHSHNLLSKLKHSLVKARKAIIGKSPTSKTLSSQ 258
                +     + +     E P+ P  K S+N+++K+K SLVKA+KAI GKSP+SK LSS 
Sbjct: 1080 TKENDTTTISKDLPK---ETPAKPAQKQSNNIIAKVKQSLVKAKKAITGKSPSSKNLSSD 1132

Query: 259  PKDDIKLK 267
            PK DIK+K
Sbjct: 1140 PKGDIKVK 1132

[Close]

BLAST of Cp4.1LG01g17520 vs. TAIR10
Match: AT3G05900.1 (AT3G05900.1 neurofilament protein-related)

HSP 1 Score: 49.3 bits (116), Expect = 4.3e-06
Identity = 79/291 (27.15%), Postives = 140/291 (48.11%), Query Frame = 1


Query: 2   ATSDELIKAM-DEPPVSERPSNEPIGGEATE-------LPVTPFMENGIKEEFDA-ADNK 61
           A +D + KA+ +E  V + PS +    E+         +P    ++   K+E +    + 
Sbjct: 398 APADVIEKAITEEKYVVDEPSKDETTSESGSALCPEKAVPTNQDLDTEPKKETEEDVSSP 457

Query: 62  GEVIQKESLEVPQNVEEQASEIVGLVPKAQDESSVMAECGKGPADKEAENNVPEQPDEPQ 121
            ++I+K   E    VEE + +      K  +  S ++     P +++++    ++ +   
Sbjct: 458 ADIIEKAITEEKHVVEEPSKD-----EKTSESGSALSPEKVVPTNQDSDTEPKKETEGDV 517

Query: 122 NKEAEAIEVVPMEEMIGTAESPTQQEFVSAEKEASCVVAEDTTESITASKNKEQQNEEHP 181
              A+ IE    +E     E P + E  +  +      A+D    + A     +++ + P
Sbjct: 518 PSPADVIEKAITDEK-HVVEEPLKDEQENVSE------AKDVVTKLAAEDENIKKDTDTP 577

Query: 182 VVAGKSLVDL-----------IAQTKIEEP---QVAGL-EAANVPEV--EVKDEQIVSTK 241
           V  GKS   L            A  K EEP   +VA + E A V +   E K +  V+TK
Sbjct: 578 VAEGKSEETLKETDTESVEKEAAANKQEEPITEKVAEVVETAPVAKEIDEAKQQPEVTTK 637

Query: 242 GEVPSNPTHKHSHNLLSKLKHSLVKARKAIIGKSPTSKTLSS-QPKDDIKL 266
            E P+    KHS++++SK+K SLVKA+KAIIG+SP+SKT+++ +PK++IK+
Sbjct: 638 -EAPAK--QKHSNSIISKVKQSLVKAKKAIIGRSPSSKTITTEEPKEEIKV 673

[Close]

BLAST of Cp4.1LG01g17520 vs. NCBI nr
Match: gi|659099260|ref|XP_008450510.1| (PREDICTED: titin-like isoform X2 [Cucumis melo])

HSP 1 Score: 85.1 bits (209), Expect = 2.0e-13
Identity = 79/221 (35.75%), Postives = 115/221 (52.04%), Query Frame = 1


Query: 83   DESSVMAECGKGPADKEAENNVPEQPDEPQNKEAEAIEVVP---MEEMIGTAESPTQQEF 142
            D+   +   G+   D  A +  P    E + KE+  I+VV    +EE     +   + E 
Sbjct: 1067 DKQDSVYHRGQPSVDLVAPDFPPHDVKEDEKKESSNIDVVAQLSVEEAPAMEKVGEENEE 1126

Query: 143  VSAEKEASCVVAEDTTESITASKNK--EQQNEEHPVVAGKSL--------VDLIAQT--- 202
               + E +     +  ++IT  + +   +  E   VVAGKS+         DLIA+T   
Sbjct: 1127 KGMKTEKADEATHENIQNITLPREEVAPRDYETDVVVAGKSIDDQKAGEVADLIAETKVE 1186

Query: 203  -KIEEPQVAGLEAANVP-----------EVEVKDEQIV---------STKGEVPSNPTHK 262
              I + ++A +E  N             E+EVKD++ V         + K EVPS P+HK
Sbjct: 1187 ESITDEKLAPVETVNAQVNETPKEPQELELEVKDKENVREEAEVPKVNDKKEVPSKPSHK 1246

Query: 263  HSHNLLSKLKHSLVKARKAIIGKSPTSKTLSSQPKDDIKLK 267
            HSHN+LSK+K SLVKA+KAIIGKSP+SKTLSS+ +DDIK+K
Sbjct: 1247 HSHNILSKVKQSLVKAKKAIIGKSPSSKTLSSEARDDIKVK 1287

[Close]

BLAST of Cp4.1LG01g17520 vs. NCBI nr
Match: gi|659099258|ref|XP_008450509.1| (PREDICTED: titin-like isoform X1 [Cucumis melo])

HSP 1 Score: 85.1 bits (209), Expect = 2.0e-13
Identity = 79/221 (35.75%), Postives = 115/221 (52.04%), Query Frame = 1


Query: 83   DESSVMAECGKGPADKEAENNVPEQPDEPQNKEAEAIEVVP---MEEMIGTAESPTQQEF 142
            D+   +   G+   D  A +  P    E + KE+  I+VV    +EE     +   + E 
Sbjct: 1074 DKQDSVYHRGQPSVDLVAPDFPPHDVKEDEKKESSNIDVVAQLSVEEAPAMEKVGEENEE 1133

Query: 143  VSAEKEASCVVAEDTTESITASKNK--EQQNEEHPVVAGKSL--------VDLIAQT--- 202
               + E +     +  ++IT  + +   +  E   VVAGKS+         DLIA+T   
Sbjct: 1134 KGMKTEKADEATHENIQNITLPREEVAPRDYETDVVVAGKSIDDQKAGEVADLIAETKVE 1193

Query: 203  -KIEEPQVAGLEAANVP-----------EVEVKDEQIV---------STKGEVPSNPTHK 262
              I + ++A +E  N             E+EVKD++ V         + K EVPS P+HK
Sbjct: 1194 ESITDEKLAPVETVNAQVNETPKEPQELELEVKDKENVREEAEVPKVNDKKEVPSKPSHK 1253

Query: 263  HSHNLLSKLKHSLVKARKAIIGKSPTSKTLSSQPKDDIKLK 267
            HSHN+LSK+K SLVKA+KAIIGKSP+SKTLSS+ +DDIK+K
Sbjct: 1254 HSHNILSKVKQSLVKAKKAIIGKSPSSKTLSSEARDDIKVK 1294

[Close]

BLAST of Cp4.1LG01g17520 vs. NCBI nr
Match: gi|778662177|ref|XP_011659475.1| (PREDICTED: uncharacterized protein LOC105436184 [Cucumis sativus])

HSP 1 Score: 84.3 bits (207), Expect = 3.4e-13
Identity = 85/239 (35.56%), Postives = 124/239 (51.88%), Query Frame = 1


Query: 68  EEQASEIVGLVPKAQDESSVMAECGKGPADKEAENNVPEQPDEPQNKEAEAIEVVPMEEM 127
           EEQ  E         D+   + + G+   +  A +  P    E + KE+  I+VV     
Sbjct: 142 EEQCKE-------QSDKQDSVYQKGQPSVNLVAPDIPPHDVKEDEKKESGNIDVVAQ--- 201

Query: 128 IGTAESPTQQEFVSAEKEASCVV--AEDTT----ESITASKNK--EQQNEEHPVVAGKSL 187
           +   E+P  ++     KE       A++ T    + IT  + +   +  E   VV GKS+
Sbjct: 202 LSVEEAPAMEKVGEENKEKGMKTEKADEATHENIQKITLPREEVAPRDYETDVVVEGKSI 261

Query: 188 VD--------LIAQTKIEEP----QVAGLEAANVP-----------EVEVKDEQIV---- 247
            D        LIA+TK++E     ++A +E A+V            E+EVKD++ V    
Sbjct: 262 DDQKAGKVANLIAETKVDESITDEKLAPVETASVQVNETPKEPQELELEVKDKENVRAEA 321

Query: 248 -----STKGEVPSNPTHKHSHNLLSKLKHSLVKARKAIIGKSPTSKTLSSQPKDDIKLK 267
                + K EVPS P+HKHSHN+LSK+K SLVKA+KAIIGKSP+SKTLSS+ +DDIK+K
Sbjct: 322 EVPKVNDKKEVPSKPSHKHSHNILSKVKQSLVKAKKAIIGKSPSSKTLSSEARDDIKVK 370

[Close]

BLAST of Cp4.1LG01g17520 vs. NCBI nr
Match: gi|1009116506|ref|XP_015874810.1| (PREDICTED: neurofilament heavy polypeptide [Ziziphus jujuba])

HSP 1 Score: 77.0 bits (188), Expect = 5.4e-11
Identity = 76/236 (32.20%), Postives = 115/236 (48.73%), Query Frame = 1


Query: 39  ENGIKEEFDAADNKGEVIQKES----LEVPQNVEEQASEIVGLVPKAQDESSVMAECGKG 98
           E  I+EE     +K +V++K S    LE  +  EE A+E   ++ +   + S++    K 
Sbjct: 518 ETVIEEEEKKETSKVDVVEKISKDISLETGKVGEENAAEKGNVITEDSTQPSIL----KD 577

Query: 99  PADKEAENNVPEQPDEPQNKEAEAIEVVPMEEMIGTAESPTQQEFVSAEKEASCVVAEDT 158
            A  ++     ++  EPQ +   A E       I   E+PT  E    E        E+ 
Sbjct: 578 EAADDSSLKKEDRDAEPQEENKIAAE------QIKDGETPTSAETKKNEN------VEEV 637

Query: 159 TESITASKNKEQQNEEHPVVAGKSLVDLIAQTKIEEPQVAGLEAANVPEVEVKDEQIVST 218
           T ++     + QQ EE            + + +  + +   LE    PE   K++ +  T
Sbjct: 638 TSAVNKPVEESQQPEEE-----------VKKEETVKTEAKELEKVQNPETPTKEDDLTKT 697

Query: 219 KG----EVPSNPTHKHSHNLLSKLKHSLVKARKAIIGKSPTSKTLSSQPKDDIKLK 267
                 EVP+ PT K S+NL+SK+KHSLVKA+KAIIGKSP SKT +S+PK DIK+K
Sbjct: 698 SQDQPKEVPAKPTQKQSNNLISKVKHSLVKAKKAIIGKSPNSKTPASEPKGDIKVK 726

[Close]

BLAST of Cp4.1LG01g17520 vs. NCBI nr
Match: gi|802755017|ref|XP_012088809.1| (PREDICTED: titin [Jatropha curcas])

HSP 1 Score: 71.2 bits (173), Expect = 3.0e-09
Identity = 79/243 (32.51%), Postives = 121/243 (49.79%), Query Frame = 1


Query: 43  KEEFDAADNKGEVIQKESLEVPQNVEEQASEIVGLVPKAQDESSVMAECGKGPAD---KE 102
           KEE   + ++  V+ K+ +E      +  S +  +  K   E       G    +   KE
Sbjct: 648 KEEKPISVSEQVVLAKQEVETDSKKSKVESSLPDVAEKTGVEDGDKGSNGTVVVESPSKE 707

Query: 103 AENNVPEQPDEPQNKE-----------AEAIEVVPMEEMIGTAESPTQQEFVSAEKEASC 162
           AE  + +  ++ Q K            A+ I V  ++E++   +  T++ FV  +KE S 
Sbjct: 708 AEVEIKKSGEDKQEKTIKAEGENVQEVAQPINVDHIKEVVSNVQV-TERSFVEDKKEES- 767

Query: 163 VVAEDTTESITASKNKEQQ-NEEHPVVAGKSLVDLIAQTKIEEPQVAG---LEAANVPEV 222
              E+T   +  SK+ E++ +E  P V      D  +Q K EE    G   LE  NV E+
Sbjct: 768 -TREETLALVETSKDVEEKLDEATPAVTEP---DKESQVKEEESAKTGEDKLEKENVKEI 827

Query: 223 EVKD-EQIVSTKGEVPSNPTHKHSHNLLSKLKHSLVKARKAIIGKSPTSKTLSSQPKDDI 267
              D E       +V + PT K S+N+L+K+K SLVKA+KAIIGKSP+SKTLSS  KDD+
Sbjct: 828 SKSDAETAQDLPKQVKAKPTQKQSNNILTKVKQSLVKAKKAIIGKSPSSKTLSSDTKDDV 884

The following BLAST results are available for this feature:

BLAST of Cp4.1LG01g17520 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG01g17520 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LYU4_CUCSA	2.4e-13	35.56	GRIP and coiled-coil domain-containing protein OS=Cucumis sativus GN=Csa_1G56075...	[more]
A0A067JHB8_JATCU	2.1e-09	32.51	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23159 PE=4 SV=1	[more]
U5GCT7_POPTR	8.7e-08	31.52	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0005s00350g PE=4 SV=1	[more]
A0A072VNB6_MEDTR	1.5e-07	31.91	Uncharacterized protein OS=Medicago truncatula GN=MTR_1g084990 PE=4 SV=1	[more]
G7IAC6_MEDTR	1.5e-07	31.91	Uncharacterized protein OS=Medicago truncatula GN=MTR_1g084990 PE=4 SV=1	[more]

BLAST of Cp4.1LG01g17520 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G05900.1	4.3e-06	27.15	neurofilament protein-related	[more]

BLAST of Cp4.1LG01g17520 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659099260\|ref\|XP_008450510.1\|	2.0e-13	35.75	PREDICTED: titin-like isoform X2 [Cucumis melo]	[more]
gi\|659099258\|ref\|XP_008450509.1\|	2.0e-13	35.75	PREDICTED: titin-like isoform X1 [Cucumis melo]	[more]
gi\|778662177\|ref\|XP_011659475.1\|	3.4e-13	35.56	PREDICTED: uncharacterized protein LOC105436184 [Cucumis sativus]	[more]
gi\|1009116506\|ref\|XP_015874810.1\|	5.4e-11	32.20	PREDICTED: neurofilament heavy polypeptide [Ziziphus jujuba]	[more]
gi\|802755017\|ref\|XP_012088809.1\|	3.0e-09	32.51	PREDICTED: titin [Jatropha curcas]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG01g17520.1	Cp4.1LG01g17520.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cp4.1LG01g17520	Melon (DHL92) v3.6.1	cpemedB413
Cp4.1LG01g17520	Melon (DHL92) v3.6.1	cpemedB448
Cp4.1LG01g17520	Silver-seed gourd	carcpeB1450
Cp4.1LG01g17520	Cucumber (Chinese Long) v3	cpecucB0530
Cp4.1LG01g17520	Cucumber (Chinese Long) v3	cpecucB0535
Cp4.1LG01g17520	Wax gourd	cpewgoB0574
Cp4.1LG01g17520	Cucurbita pepo (Zucchini)	cpecpeB037
Cp4.1LG01g17520	Cucumber (Gy14) v1	cgycpeB0757
Cp4.1LG01g17520	Cucurbita maxima (Rimu)	cmacpeB436
Cp4.1LG01g17520	Cucurbita maxima (Rimu)	cmacpeB721
Cp4.1LG01g17520	Cucurbita moschata (Rifu)	cmocpeB286
Cp4.1LG01g17520	Cucurbita moschata (Rifu)	cmocpeB400
Cp4.1LG01g17520	Cucurbita moschata (Rifu)	cmocpeB673
Cp4.1LG01g17520	Cucurbita moschata (Rifu)	cmocpeB680
Cp4.1LG01g17520	Cucurbita moschata (Rifu)	cmocpeB685
Cp4.1LG01g17520	Wild cucumber (PI 183967)	cpecpiB429
Cp4.1LG01g17520	Wild cucumber (PI 183967)	cpecpiB435
Cp4.1LG01g17520	Cucumber (Chinese Long) v2	cpecuB434
Cp4.1LG01g17520	Cucumber (Chinese Long) v2	cpecuB436
Cp4.1LG01g17520	Bottle gourd (USVL1VR-Ls)	cpelsiB313
Cp4.1LG01g17520	Watermelon (Charleston Gray)	cpewcgB381
Cp4.1LG01g17520	Watermelon (Charleston Gray)	cpewcgB400
Cp4.1LG01g17520	Watermelon (97103) v1	cpewmB401
Cp4.1LG01g17520	Watermelon (97103) v1	cpewmB439
Cp4.1LG01g17520	Melon (DHL92) v3.5.1	cpemeB352
Cp4.1LG01g17520	Melon (DHL92) v3.5.1	cpemeB387
Cp4.1LG01g17520	Cucumber (Gy14) v2	cgybcpeB639
Cp4.1LG01g17520	Cucumber (Gy14) v2	cgybcpeB640