Cp4.1LG01g17480 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG01g17480
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionUnknown protein
LocationCp4.1LG01 : 12698050 .. 12698514 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGTCTTGGACTTCCGGACACCGACACCCCAGGGGTTCCCAATCCCGACGACTTCATGAGCATGCAGCATCACCACCACAACCACCACAACCACCACAATCTCAACCCCCACCCACACCATTATTACTTTCTCCACGCCGCGGATTCCAAACCCGCCTTCCCTTCTTCCTCCAATGCCACTCCCTCTGACGCAGCCCCCCAGGAGCAGCGCATGCTGGAGTACACGCGGTCACTATCTCAGGGGACGGCGAGGCGACTGGTGCCCGCGGCCACGTATTTGGCGGTGCTGGTGTGCCTGGCGGCGTCGTTGTTGATCCTTCCGTTGATTCTACCGCCGTTGCCGGCGCCGCCGTTGATGCTGCTGTTGCTTCTTCCCATTGGTATTTTGGGAATGCTGATGGTGTTGGCGTTTATGCCTTCGAATGACGCCAAGGATATTAGTTCCTCTCATACGTATATGTAA

mRNA sequence

ATGAGTCTTGGACTTCCGGACACCGACACCCCAGGGGTTCCCAATCCCGACGACTTCATGAGCATGCAGCATCACCACCACAACCACCACAACCACCACAATCTCAACCCCCACCCACACCATTATTACTTTCTCCACGCCGCGGATTCCAAACCCGCCTTCCCTTCTTCCTCCAATGCCACTCCCTCTGACGCAGCCCCCCAGGAGCAGCGCATGCTGGAGTACACGCGGTCACTATCTCAGGGGACGGCGAGGCGACTGGTGCCCGCGGCCACGTATTTGGCGGTGCTGGTGTGCCTGGCGGCGTCGTTGTTGATCCTTCCGTTGATTCTACCGCCGTTGCCGGCGCCGCCGTTGATGCTGCTGTTGCTTCTTCCCATTGGTATTTTGGGAATGCTGATGGTGTTGGCGTTTATGCCTTCGAATGACGCCAAGGATATTAGTTCCTCTCATACGTATATGTAA

Coding sequence (CDS)

ATGAGTCTTGGACTTCCGGACACCGACACCCCAGGGGTTCCCAATCCCGACGACTTCATGAGCATGCAGCATCACCACCACAACCACCACAACCACCACAATCTCAACCCCCACCCACACCATTATTACTTTCTCCACGCCGCGGATTCCAAACCCGCCTTCCCTTCTTCCTCCAATGCCACTCCCTCTGACGCAGCCCCCCAGGAGCAGCGCATGCTGGAGTACACGCGGTCACTATCTCAGGGGACGGCGAGGCGACTGGTGCCCGCGGCCACGTATTTGGCGGTGCTGGTGTGCCTGGCGGCGTCGTTGTTGATCCTTCCGTTGATTCTACCGCCGTTGCCGGCGCCGCCGTTGATGCTGCTGTTGCTTCTTCCCATTGGTATTTTGGGAATGCTGATGGTGTTGGCGTTTATGCCTTCGAATGACGCCAAGGATATTAGTTCCTCTCATACGTATATGTAA

Protein sequence

MSLGLPDTDTPGVPNPDDFMSMQHHHHNHHNHHNLNPHPHHYYFLHAADSKPAFPSSSNATPSDAAPQEQRMLEYTRSLSQGTARRLVPAATYLAVLVCLAASLLILPLILPPLPAPPLMLLLLLPIGILGMLMVLAFMPSNDAKDISSSHTYM
Homology
[Close]
BLAST of Cp4.1LG01g17480 vs. Swiss-Prot
Match: ARL_ARATH (ARGOS-like protein OS=Arabidopsis thaliana GN=ARL PE=2 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 1.9e-08
Identity = 62/142 (43.66%), Postives = 86/142 (60.56%), Query Frame = 1 

Query: 18  DFMSMQHHHHNHHNHHNLNPHPHHYYFLHAADSKPAFPSSSNATPSDAAPQEQRMLEYTR 77
           +F S+Q+   N   H++LN +          D      S   + P+    ++    E  R
Sbjct: 4   EFSSLQNDIINIQEHYSLNNNMDV-----RGDHNRKNTSFRGSAPAPIMGKQ----ELFR 63

Query: 78  SLS-QGTARRLVPAATY----LAVLVCLAASLLILPLILPPLPAPPLMLLLLLPIGILGM 137
           +LS Q + RRL+ A+ +    + VLV L ASLLILPLILPPLP PP MLLL+ PIGI+ +
Sbjct: 64  TLSSQNSPRRLISASYFSLESMVVLVGLTASLLILPLILPPLPPPPFMLLLI-PIGIMVL 123

Query: 138 LMVLAFMPSNDAKDISSSHTYM 155
           LMVLAFMPS+++K +SSS T+M
Sbjct: 124 LMVLAFMPSSNSKHVSSSSTFM 135

[Close]
BLAST of Cp4.1LG01g17480 vs. Swiss-Prot
Match: ARGOS_BRARP (Protein AUXIN-REGULATED GENE INVOLVED IN ORGAN SIZE OS=Brassica rapa subsp. pekinensis GN=ARGOS PE=2 SV=2)

HSP 1 Score: 58.5 bits (140), Expect = 7.3e-08
Identity = 46/98 (46.94%), Postives = 62/98 (63.27%), Query Frame = 1 

Query: 62  PSDAAPQEQRMLEYTRSLSQGTARRLVPAATY-----LAVLVCLAASLLILPLILPPLPA 121
           P  A   E    E  R+ S  + +RL+  A Y     L +LV L ASLLILPL+LPPLP 
Sbjct: 42  PPPAMTSENSKHELRRTFS--SQKRLMIPANYFSLESLVILVGLTASLLILPLVLPPLPP 101

Query: 122 PPLMLLLLLPIGILGMLMVLAFMPSNDAKDISSSHTYM 155
           PP M LLL+PIGI+ +L++LAFMPS+ ++    + T+M
Sbjct: 102 PPFM-LLLVPIGIMVLLIILAFMPSSSSRAKDVTRTFM 136

[Close]
BLAST of Cp4.1LG01g17480 vs. Swiss-Prot
Match: ARGOS_ARATH (Protein AUXIN-REGULATED GENE INVOLVED IN ORGAN SIZE OS=Arabidopsis thaliana GN=ARGOS PE=2 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 2.3e-06
Identity = 43/78 (55.13%), Postives = 54/78 (69.23%), Query Frame = 1 

Query: 69  EQRMLEYTRSLSQGTARRLVPAATY----LAVLVCLAASLLILPLILPPLPAPPLMLLLL 128
           E+   E  RS S    R ++PA  +    L +LV L ASLLILPL+LPPLP PP M LLL
Sbjct: 42  EKSKQELRRSFS-AQKRMMIPANYFSLESLFLLVGLTASLLILPLVLPPLPPPPFM-LLL 101

Query: 129 LPIGILGMLMVLAFMPSN 143
           +PIGI+ +L+VLAFMPS+
Sbjct: 102 VPIGIMVLLVVLAFMPSS 117

[Close]
BLAST of Cp4.1LG01g17480 vs. TrEMBL
Match: A0A0A0LHQ4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G123610 PE=4 SV=1)

HSP 1 Score: 146.0 bits (367), Expect = 3.9e-32
Identity = 95/157 (60.51%), Postives = 110/157 (70.06%), Query Frame = 1 

Query: 1   MSLGLPDTDTPGVPNPDDFMSMQHHHHNHHNHHNLNPHPHHYYFLHAADSKPAFPSSS-- 60
           M+LG  + +  GVPNP+ F+            H   P  +HYY +  + +   F S S  
Sbjct: 1   MTLGFQEAEKRGVPNPNHFL------------HLHQPSQNHYYSMDGSSNNSNFGSDSTN 60

Query: 61  NATPSDAAPQEQRMLEYTRSLSQGTARRLVPAATYLAVLVCLAASLLILPLILPPLPAPP 120
             T   AA Q++R +EY RSLSQGT RRLVPAA+YL VL+CLAASLLILPL+LPPLP PP
Sbjct: 61  RITYYAAAAQDRRKVEYLRSLSQGTPRRLVPAASYLGVLLCLAASLLILPLVLPPLPPPP 120

Query: 121 LMLLLLLPIGILGMLMVLAFMPSNDAKDI-SSSHTYM 155
           LMLLLLLPIGILGMLMVLAFMPSND KDI SSSHTYM
Sbjct: 121 LMLLLLLPIGILGMLMVLAFMPSNDTKDITSSSHTYM 145

[Close]
BLAST of Cp4.1LG01g17480 vs. TrEMBL
Match: A0A067K392_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19251 PE=4 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 1.1e-13
Identity = 64/112 (57.14%), Postives = 82/112 (73.21%), Query Frame = 1 

Query: 51  KPAFPSSSNATPSDAAP---QEQRMLEYTRSLS-QGTARRLVPAATY----LAVLVCLAA 110
           KP    SS ++P         EQ+ +EY RSLS QG+ARRL+P++ +    L +L+CL A
Sbjct: 35  KPTTAISSQSSPPPPPRFRVVEQKKMEYQRSLSSQGSARRLLPSSYFSLESLLLLICLTA 94

Query: 111 SLLILPLILPPLPAPPLMLLLLLPIGILGMLMVLAFMPSNDAKDISSSHTYM 155
           SLLILPLILPPLP PP  LLLLLPIGILG+LM+LAFMP+N A+DI  ++TY+
Sbjct: 95  SLLILPLILPPLPPPP-FLLLLLPIGILGVLMILAFMPTN-ARDI--TYTYV 142

[Close]
BLAST of Cp4.1LG01g17480 vs. TrEMBL
Match: A0A061ERG1_THECC (Auxin-regulated gene involved in organ size OS=Theobroma cacao GN=TCM_021527 PE=4 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 1.1e-13
Identity = 58/90 (64.44%), Postives = 70/90 (77.78%), Query Frame = 1 

Query: 69  EQRMLEYTRSLSQGTARRLVPAATY----LAVLVCLAASLLILPLILPPLPAPPLMLLLL 128
           E++ +EY RS SQG ARRL+P + +    L +LVCL ASLLILPLILPPLP PP  LLLL
Sbjct: 41  ERKKVEYHRSFSQGGARRLLPVSYFSLESLLLLVCLTASLLILPLILPPLPPPP-FLLLL 100

Query: 129 LPIGILGMLMVLAFMPSNDAKDISSSHTYM 155
           LPIGIL +LM+LAFMPSN  +DI  ++TYM
Sbjct: 101 LPIGILAVLMILAFMPSN-VRDI--TYTYM 126

[Close]
BLAST of Cp4.1LG01g17480 vs. TrEMBL
Match: B9HGA4_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0007s00290g PE=4 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 3.1e-13
Identity = 59/93 (63.44%), Postives = 72/93 (77.42%), Query Frame = 1 

Query: 60  ATPSDAAPQEQRMLEYTRSLSQGTARRLVPAATY----LAVLVCLAASLLILPLILPPLP 119
           ATP +    E+R +EY RSLSQG++RRL+ A+ +    L +LVCL ASLLILPL+LPPLP
Sbjct: 42  ATPPNTRV-EKRKMEYNRSLSQGSSRRLLTASHFSLVSLLLLVCLTASLLILPLVLPPLP 101

Query: 120 APPLMLLLLLPIGILGMLMVLAFMPSNDAKDIS 149
            PP M LLLLPIGIL +LM LAFMPSN A+DI+
Sbjct: 102 PPPFM-LLLLPIGILVLLMFLAFMPSN-ARDIT 131

[Close]
BLAST of Cp4.1LG01g17480 vs. TrEMBL
Match: V4VQI9_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10022861mg PE=4 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 1.2e-12
Identity = 57/96 (59.38%), Postives = 72/96 (75.00%), Query Frame = 1 

Query: 60  ATPSDAAPQEQRMLEYTRSLSQGTARRLVPAATY----LAVLVCLAASLLILPLILPPLP 119
           ATP    P E+R +EY RS SQG +R+L  A+ +    L +LVCL ASLLILPL+LPPLP
Sbjct: 36  ATP----PVEKRKVEYHRSYSQGASRKLFSASYFTLESLLLLVCLTASLLILPLVLPPLP 95

Query: 120 APPLMLLLLLPIGILGMLMVLAFMPSNDAKDISSSH 152
            PP  LLLL+PIGIL +L+VLAFMPSN  +DI+S++
Sbjct: 96  PPP-FLLLLVPIGILAVLLVLAFMPSN-VRDITSTY 125

[Close]
BLAST of Cp4.1LG01g17480 vs. TAIR10
Match: AT2G44080.1 (AT2G44080.1 ARGOS-like)

HSP 1 Score: 60.5 bits (145), Expect = 1.1e-09
Identity = 62/142 (43.66%), Postives = 86/142 (60.56%), Query Frame = 1 

Query: 18  DFMSMQHHHHNHHNHHNLNPHPHHYYFLHAADSKPAFPSSSNATPSDAAPQEQRMLEYTR 77
           +F S+Q+   N   H++LN +          D      S   + P+    ++    E  R
Sbjct: 4   EFSSLQNDIINIQEHYSLNNNMDV-----RGDHNRKNTSFRGSAPAPIMGKQ----ELFR 63

Query: 78  SLS-QGTARRLVPAATY----LAVLVCLAASLLILPLILPPLPAPPLMLLLLLPIGILGM 137
           +LS Q + RRL+ A+ +    + VLV L ASLLILPLILPPLP PP MLLL+ PIGI+ +
Sbjct: 64  TLSSQNSPRRLISASYFSLESMVVLVGLTASLLILPLILPPLPPPPFMLLLI-PIGIMVL 123

Query: 138 LMVLAFMPSNDAKDISSSHTYM 155
           LMVLAFMPS+++K +SSS T+M
Sbjct: 124 LMVLAFMPSSNSKHVSSSSTFM 135

[Close]
BLAST of Cp4.1LG01g17480 vs. TAIR10
Match: AT3G59900.1 (AT3G59900.1 auxin-regulated gene involved in organ size)

HSP 1 Score: 53.5 bits (127), Expect = 1.3e-07
Identity = 43/78 (55.13%), Postives = 54/78 (69.23%), Query Frame = 1 

Query: 69  EQRMLEYTRSLSQGTARRLVPAATY----LAVLVCLAASLLILPLILPPLPAPPLMLLLL 128
           E+   E  RS S    R ++PA  +    L +LV L ASLLILPL+LPPLP PP M LLL
Sbjct: 42  EKSKQELRRSFS-AQKRMMIPANYFSLESLFLLVGLTASLLILPLVLPPLPPPPFM-LLL 101

Query: 129 LPIGILGMLMVLAFMPSN 143
           +PIGI+ +L+VLAFMPS+
Sbjct: 102 VPIGIMVLLVVLAFMPSS 117

[Close]
BLAST of Cp4.1LG01g17480 vs. NCBI nr
Match: gi|659082120|ref|XP_008441681.1| (PREDICTED: ARGOS-like protein [Cucumis melo])

HSP 1 Score: 147.1 bits (370), Expect = 2.5e-32
Identity = 95/157 (60.51%), Postives = 112/157 (71.34%), Query Frame = 1 

Query: 1   MSLGLPDTDTPGVPNPDDFMSMQHHHHNHHNHHNLNPHPHHYYFLHAADSKPAFPSSSNA 60
           M+LG  + +  GVPNP+ F+++     NHH            YF+ A+ +   F S S  
Sbjct: 1   MTLGFQEAEKRGVPNPNHFLNLHQPSRNHH------------YFMDASSNNSNFGSDSTN 60

Query: 61  TPS--DAAPQEQRMLEYTRSLSQGTARRLVPAATYLAVLVCLAASLLILPLILPPLPAPP 120
           T +   AA Q++R +EY RS SQGT RRLVPAA+YL VL+CLAASLLILPL+LPPLP PP
Sbjct: 61  TITYYAAAAQDRRKVEYLRSPSQGTPRRLVPAASYLGVLLCLAASLLILPLVLPPLPPPP 120

Query: 121 LMLLLLLPIGILGMLMVLAFMPSNDAKDI-SSSHTYM 155
           LMLLLLLPIGILGMLMVLAFMPSND KDI SSSHTYM
Sbjct: 121 LMLLLLLPIGILGMLMVLAFMPSNDTKDITSSSHTYM 145

[Close]
BLAST of Cp4.1LG01g17480 vs. NCBI nr
Match: gi|700206331|gb|KGN61450.1| (hypothetical protein Csa_2G123610 [Cucumis sativus])

HSP 1 Score: 146.0 bits (367), Expect = 5.5e-32
Identity = 95/157 (60.51%), Postives = 110/157 (70.06%), Query Frame = 1 

Query: 1   MSLGLPDTDTPGVPNPDDFMSMQHHHHNHHNHHNLNPHPHHYYFLHAADSKPAFPSSS-- 60
           M+LG  + +  GVPNP+ F+            H   P  +HYY +  + +   F S S  
Sbjct: 1   MTLGFQEAEKRGVPNPNHFL------------HLHQPSQNHYYSMDGSSNNSNFGSDSTN 60

Query: 61  NATPSDAAPQEQRMLEYTRSLSQGTARRLVPAATYLAVLVCLAASLLILPLILPPLPAPP 120
             T   AA Q++R +EY RSLSQGT RRLVPAA+YL VL+CLAASLLILPL+LPPLP PP
Sbjct: 61  RITYYAAAAQDRRKVEYLRSLSQGTPRRLVPAASYLGVLLCLAASLLILPLVLPPLPPPP 120

Query: 121 LMLLLLLPIGILGMLMVLAFMPSNDAKDI-SSSHTYM 155
           LMLLLLLPIGILGMLMVLAFMPSND KDI SSSHTYM
Sbjct: 121 LMLLLLLPIGILGMLMVLAFMPSNDTKDITSSSHTYM 145

[Close]
BLAST of Cp4.1LG01g17480 vs. NCBI nr
Match: gi|802677453|ref|XP_012081940.1| (PREDICTED: ARGOS-like protein [Jatropha curcas])

HSP 1 Score: 84.7 bits (208), Expect = 1.5e-13
Identity = 64/112 (57.14%), Postives = 82/112 (73.21%), Query Frame = 1 

Query: 51  KPAFPSSSNATPSDAAP---QEQRMLEYTRSLS-QGTARRLVPAATY----LAVLVCLAA 110
           KP    SS ++P         EQ+ +EY RSLS QG+ARRL+P++ +    L +L+CL A
Sbjct: 35  KPTTAISSQSSPPPPPRFRVVEQKKMEYQRSLSSQGSARRLLPSSYFSLESLLLLICLTA 94

Query: 111 SLLILPLILPPLPAPPLMLLLLLPIGILGMLMVLAFMPSNDAKDISSSHTYM 155
           SLLILPLILPPLP PP  LLLLLPIGILG+LM+LAFMP+N A+DI  ++TY+
Sbjct: 95  SLLILPLILPPLPPPP-FLLLLLPIGILGVLMILAFMPTN-ARDI--TYTYV 142

[Close]
BLAST of Cp4.1LG01g17480 vs. NCBI nr
Match: gi|590627539|ref|XP_007026465.1| (Auxin-regulated gene involved in organ size [Theobroma cacao])

HSP 1 Score: 84.7 bits (208), Expect = 1.5e-13
Identity = 58/90 (64.44%), Postives = 70/90 (77.78%), Query Frame = 1 

Query: 69  EQRMLEYTRSLSQGTARRLVPAATY----LAVLVCLAASLLILPLILPPLPAPPLMLLLL 128
           E++ +EY RS SQG ARRL+P + +    L +LVCL ASLLILPLILPPLP PP  LLLL
Sbjct: 41  ERKKVEYHRSFSQGGARRLLPVSYFSLESLLLLVCLTASLLILPLILPPLPPPP-FLLLL 100

Query: 129 LPIGILGMLMVLAFMPSNDAKDISSSHTYM 155
           LPIGIL +LM+LAFMPSN  +DI  ++TYM
Sbjct: 101 LPIGILAVLMILAFMPSN-VRDI--TYTYM 126

[Close]
BLAST of Cp4.1LG01g17480 vs. NCBI nr
Match: gi|224095294|ref|XP_002310372.1| (hypothetical protein POPTR_0007s00290g [Populus trichocarpa])

HSP 1 Score: 83.2 bits (204), Expect = 4.4e-13
Identity = 59/93 (63.44%), Postives = 72/93 (77.42%), Query Frame = 1 

Query: 60  ATPSDAAPQEQRMLEYTRSLSQGTARRLVPAATY----LAVLVCLAASLLILPLILPPLP 119
           ATP +    E+R +EY RSLSQG++RRL+ A+ +    L +LVCL ASLLILPL+LPPLP
Sbjct: 42  ATPPNTRV-EKRKMEYNRSLSQGSSRRLLTASHFSLVSLLLLVCLTASLLILPLVLPPLP 101

Query: 120 APPLMLLLLLPIGILGMLMVLAFMPSNDAKDIS 149
            PP M LLLLPIGIL +LM LAFMPSN A+DI+
Sbjct: 102 PPPFM-LLLLPIGILVLLMFLAFMPSN-ARDIT 131

The following BLAST results are available for this feature:
BLAST of Cp4.1LG01g17480 vs. Swiss-Prot
Match NameE-valueIdentityDescription
ARL_ARATH1.9e-0843.66ARGOS-like protein OS=Arabidopsis thaliana GN=ARL PE=2 SV=1[more]
ARGOS_BRARP7.3e-0846.94Protein AUXIN-REGULATED GENE INVOLVED IN ORGAN SIZE OS=Brassica rapa subsp. peki... [more]
ARGOS_ARATH2.3e-0655.13Protein AUXIN-REGULATED GENE INVOLVED IN ORGAN SIZE OS=Arabidopsis thaliana GN=A... [more]
BLAST of Cp4.1LG01g17480 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LHQ4_CUCSA3.9e-3260.51Uncharacterized protein OS=Cucumis sativus GN=Csa_2G123610 PE=4 SV=1[more]
A0A067K392_JATCU1.1e-1357.14Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19251 PE=4 SV=1[more]
A0A061ERG1_THECC1.1e-1364.44Auxin-regulated gene involved in organ size OS=Theobroma cacao GN=TCM_021527 PE=... [more]
B9HGA4_POPTR3.1e-1363.44Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0007s00290g PE=4 SV=1[more]
V4VQI9_9ROSI1.2e-1259.38Uncharacterized protein OS=Citrus clementina GN=CICLE_v10022861mg PE=4 SV=1[more]
BLAST of Cp4.1LG01g17480 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G44080.11.1e-0943.66 ARGOS-like[more]
AT3G59900.11.3e-0755.13 auxin-regulated gene involved in organ size[more]
BLAST of Cp4.1LG01g17480 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659082120|ref|XP_008441681.1|2.5e-3260.51PREDICTED: ARGOS-like protein [Cucumis melo][more]
gi|700206331|gb|KGN61450.1|5.5e-3260.51hypothetical protein Csa_2G123610 [Cucumis sativus][more]
gi|802677453|ref|XP_012081940.1|1.5e-1357.14PREDICTED: ARGOS-like protein [Jatropha curcas][more]
gi|590627539|ref|XP_007026465.1|1.5e-1364.44Auxin-regulated gene involved in organ size [Theobroma cacao][more]
gi|224095294|ref|XP_002310372.1|4.4e-1363.44hypothetical protein POPTR_0007s00290g [Populus trichocarpa][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG01g17480.1Cp4.1LG01g17480.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR36023FAMILY NOT NAMEDcoord: 68..154
score: 2.9
NoneNo IPR availablePANTHERPTHR36023:SF3ARGOS-LIKE PROTEIN-RELATEDcoord: 68..154
score: 2.9

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG01g17480Cucurbita maxima (Rimu)cmacpeB721
Cp4.1LG01g17480Cucurbita moschata (Rifu)cmocpeB673
Cp4.1LG01g17480Cucurbita moschata (Rifu)cmocpeB680
Cp4.1LG01g17480Cucurbita moschata (Rifu)cmocpeB682