Cp4.1LG01g17440 (gene) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG01g17440
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	40S ribosomal protein S4
Location	Cp4.1LG01 : 12490066 .. 12492495 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TAACCAATATTATTCTCCTACTCAGGCTTTCATATAACGTATTACCGCCATTAGAACAATCTCTTGTTCGCCTCTGCAGAAGCTCTACCTCTTTCCAACTTCGTTTTGAGGATATGGTCAGTGGATCTCTTTATCAACTCTTCTCTTTTCTCCTTTGGTTGATGTCTTCATTGTCCTTTAAGATGTTCTATATTGTTGTTTCCATATTCATTTGGATTTTTTTTTTTAACCCCCTGTAATATGAGATTTGTGAGCCTGCTCATTTGTTAGTTCTGGATTTTTCAAGTGTCTCGTTATAAGAGTGATGCTTATTGTGAGGTACCCTGTGAAATGGCCACAGCGAAGGCCTCGGCTAATTCATCCATGATACACCAACTCCTCCACTCTACTTCTTTTGGGTCTGATTTTTTTTTTTTTTCATATAGGAATTATGTGTCCTAGAGAGTGTTTTGAGTTTGGTTCTGGAACCGTCCATCATAAAATTTAATTGTGTTGTGTCAAAGGCTGTGACGGAAAAAAGGCATGGAAGCTGTTTAGTAAAAAAAAAAAAAAAAATTACAAATAGTTTGGTCGTCCTACAATCCCAGAAATATGCACAGCATAATAGTTTCTGCAAGATGTTCATCCACATATTTTTGTTTACTTTCATTTTCTTATTCAAAATTGATAACTTCGCCATGAAATTAATGTCGGCTTTGATAGGCAAGAGGATTGAAGAAGCATTTGAAGAGGCTCAATGCTCCAAAGCATTGGATGCTCGACAAACTCGGTGGTGCATTTGTGAGTGAAATTTCTAGTTTCCATTTCAGTTTACATTTTTATTTTTGGGACAAACTTATTGATGACATTTTGTTCGACCTTTTTGATTCCTTTGTAGGCCCCCAAACCTTCATCTGGACCTCACAAATCAAGGGAATGTCTCCCACTTATTTTGATATTGCGTAACAGATTGAAATATGCTCTCACATACCGTGAGGTAATTTCAATTTTGATGCAACGACATGTTTTAGTTGATGGGAAGGTGAGGACAGACAAGACGTACCCTGCTGGGTTCATGGGTATGCTTACCTCAAACTTTGCATGCATACTATTATTTCAATTTCGATACTTATTCACCATTGTTCATAAGTCCCACAAATGCACATATCTTTCTAGGCAAATTACTATTTGCAAACGAGATACATAACAGTGTCCTGATAATAGAATGTGTTCCAATGACTTGATTGTCTGCTCTTATCTAAATCATTCTCTTAACCATGGTACTGCTTTCATCCAATGTCTCTTAATTGCTTAATATGCAATCCATTCATTATTTTTTTATGTACATTTCGAGCATGATACTTTTGTTTTTTTAGATGTTGTGTCGATTCCCAAAACAAATGAGAATTTCCGGCTTCTCTACGACACAAAAGGCCGATTCCGTCTTCACTCAGTCAGGGATGAAGAGGCTAAGGTTAGCTTTTGTTCTTTCATGACGAAGTTTGATATGTCTGTTACGACAATTCCTGTTGTATAGAATGTATACTGTCAGGATTCAGAGGAAATTAGATGCAATTGCAATCAGAGGTCTTACAACTTGTCCAGACAGAAAATATCATATTTTTAAAACCATTGTGCATTTTTTAGATGCTGTTTTTCACCTTGATTATTATCATGTGAGGTTCATGAAGGCAAATTAATTTCCAAATCCTCTGAAGTAATAAGTTTGTCTGTTTTCCATGATATATGGAATGGGATGATTGGTGATGACCGATTGATTTTGCAGTTTAAGCTGTGCAAAGTCCGATCAGTGCAGTTTGGGCAGAAGGGAATTCCTTATCTGAACACTTACGATGGACGAACAATCCGATATCCCGACCCCCTGATCAAGGCAAACGACACCATCAAGCTAGACCTCGACTCGAACAAGATTGCTGATTTCATCAAGTTTGATGTGGGAAACGTTGTGATGGTGACTGGTGGAAGAAATAGAGGACGAGTTGGAGTAATTAAAAACAGGGAGAAGCACAAGGGAAGCTTTGAGACAATTCACATTCAGGATGCTACCGGGCATGAATTTGCAACTCGGCTGGGCAATGTGTTTACGATTGGGAAGGGGACAAAGCCATGGGTGTCCCTTCCCAAGGGCAAGGGTATAAAACTATCCATCATTGAAGAAGCCAGGAAGAGGCTTGCCAACCAAGCAGCCGTTACGGTTTAAGAGTTGAGTATTGTAGTCATGATTCTAAGACCATTTTTGTTTAATATTTTGTGTTCTAATATGATGATAAATTAGATGTTGAGACTACTTCTGTTGCTTCTATAATTTTTTGATACAACATTGTTCCAATGACTCGATTTATTTATTTATTTTTAATATGGAGATGGAAATATTAGCATCTATTAGGGATCTATAATTAACATTTGACCAAAGCTGTTAAATTTTATAAG

mRNA sequence

TAACCAATATTATTCTCCTACTCAGGCTTTCATATAACGTATTACCGCCATTAGAACAATCTCTTGTTCGCCTCTGCAGAAGCTCTACCTCTTTCCAACTTCGTTTTGAGGATATGGCAAGAGGATTGAAGAAGCATTTGAAGAGGCTCAATGCTCCAAAGCATTGGATGCTCGACAAACTCGGTGGTGCATTTGCCCCCAAACCTTCATCTGGACCTCACAAATCAAGGGAATGTCTCCCACTTATTTTGATATTGCGTAACAGATTGAAATATGCTCTCACATACCGTGAGGTAATTTCAATTTTGATGCAACGACATGTTTTAGTTGATGGGAAGGTGAGGACAGACAAGACGTACCCTGCTGGGTTCATGGATGTTGTGTCGATTCCCAAAACAAATGAGAATTTCCGGCTTCTCTACGACACAAAAGGCCGATTCCGTCTTCACTCAGTCAGGGATGAAGAGGCTAAGTTTAAGCTGTGCAAAGTCCGATCAGTGCAGTTTGGGCAGAAGGGAATTCCTTATCTGAACACTTACGATGGACGAACAATCCGATATCCCGACCCCCTGATCAAGGCAAACGACACCATCAAGCTAGACCTCGACTCGAACAAGATTGCTGATTTCATCAAGTTTGATGTGGGAAACGTTGTGATGGTGACTGGTGGAAGAAATAGAGGACGAGTTGGAGTAATTAAAAACAGGGAGAAGCACAAGGGAAGCTTTGAGACAATTCACATTCAGGATGCTACCGGGCATGAATTTGCAACTCGGCTGGGCAATGTGTTTACGATTGGGAAGGGGACAAAGCCATGGGTGTCCCTTCCCAAGGGCAAGGGTATAAAACTATCCATCATTGAAGAAGCCAGGAAGAGGCTTGCCAACCAAGCAGCCGTTACGGTTTAAGAGTTGAGTATTGTAGTCATGATTCTAAGACCATTTTTGTTTAATATTTTGTGTTCTAATATGATGATAAATTAGATGTTGAGACTACTTCTGTTGCTTCTATAATTTTTTGATACAACATTGTTCCAATGACTCGATTTATTTATTTATTTTTAATATGGAGATGGAAATATTAGCATCTATTAGGGATCTATAATTAACATTTGACCAAAGCTGTTAAATTTTATAAG

Coding sequence (CDS)

ATGGCAAGAGGATTGAAGAAGCATTTGAAGAGGCTCAATGCTCCAAAGCATTGGATGCTCGACAAACTCGGTGGTGCATTTGCCCCCAAACCTTCATCTGGACCTCACAAATCAAGGGAATGTCTCCCACTTATTTTGATATTGCGTAACAGATTGAAATATGCTCTCACATACCGTGAGGTAATTTCAATTTTGATGCAACGACATGTTTTAGTTGATGGGAAGGTGAGGACAGACAAGACGTACCCTGCTGGGTTCATGGATGTTGTGTCGATTCCCAAAACAAATGAGAATTTCCGGCTTCTCTACGACACAAAAGGCCGATTCCGTCTTCACTCAGTCAGGGATGAAGAGGCTAAGTTTAAGCTGTGCAAAGTCCGATCAGTGCAGTTTGGGCAGAAGGGAATTCCTTATCTGAACACTTACGATGGACGAACAATCCGATATCCCGACCCCCTGATCAAGGCAAACGACACCATCAAGCTAGACCTCGACTCGAACAAGATTGCTGATTTCATCAAGTTTGATGTGGGAAACGTTGTGATGGTGACTGGTGGAAGAAATAGAGGACGAGTTGGAGTAATTAAAAACAGGGAGAAGCACAAGGGAAGCTTTGAGACAATTCACATTCAGGATGCTACCGGGCATGAATTTGCAACTCGGCTGGGCAATGTGTTTACGATTGGGAAGGGGACAAAGCCATGGGTGTCCCTTCCCAAGGGCAAGGGTATAAAACTATCCATCATTGAAGAAGCCAGGAAGAGGCTTGCCAACCAAGCAGCCGTTACGGTTTAA

Protein sequence

MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVISILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSVRDEEAKFKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLDSNKIADFIKFDVGNVVMVTGGRNRGRVGVIKNREKHKGSFETIHIQDATGHEFATRLGNVFTIGKGTKPWVSLPKGKGIKLSIIEEARKRLANQAAVTV

Homology

[Close]

BLAST of Cp4.1LG01g17440 vs. Swiss-Prot
Match: RS43_ARATH (40S ribosomal protein S4-3 OS=Arabidopsis thaliana GN=RPS4D PE=2 SV=2)

HSP 1 Score: 509.6 bits (1311), Expect = 2.0e-143
Identity = 244/261 (93.49%), Postives = 257/261 (98.47%), Query Frame = 1


Query: 1   MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE 60
           MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPL+LI+RNRLKYALTYRE
Sbjct: 1   MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVLIIRNRLKYALTYRE 60

Query: 61  VISILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSVRDEEAK 120
           VISILMQRH+ VDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHS++DEEAK
Sbjct: 61  VISILMQRHIQVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIKDEEAK 120

Query: 121 FKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLDSNKIADFIKFDVGNV 180
           FKLCKVRS+QFGQKGIPYLNTYDGRTIRYPDPLIK NDTIKLDL++NKI +FIKFDVGNV
Sbjct: 121 FKLCKVRSIQFGQKGIPYLNTYDGRTIRYPDPLIKPNDTIKLDLEANKIVEFIKFDVGNV 180

Query: 181 VMVTGGRNRGRVGVIKNREKHKGSFETIHIQDATGHEFATRLGNVFTIGKGTKPWVSLPK 240
           VMVTGGRNRGRVGVIKNREKHKGSFETIHIQD+TGHEFATRLGNV+TIGKGTKPWVSLPK
Sbjct: 181 VMVTGGRNRGRVGVIKNREKHKGSFETIHIQDSTGHEFATRLGNVYTIGKGTKPWVSLPK 240

Query: 241 GKGIKLSIIEEARKRLANQAA 262
           GKGIKL+IIEEARKRLA+Q A
Sbjct: 241 GKGIKLTIIEEARKRLASQQA 261

[Close]

BLAST of Cp4.1LG01g17440 vs. Swiss-Prot
Match: RS42_ARATH (40S ribosomal protein S4-2 OS=Arabidopsis thaliana GN=RPS4B PE=2 SV=4)

HSP 1 Score: 509.2 bits (1310), Expect = 2.7e-143
Identity = 244/261 (93.49%), Postives = 256/261 (98.08%), Query Frame = 1


Query: 1   MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE 60
           MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPL+LI+RNRLKYALTYRE
Sbjct: 1   MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVLIIRNRLKYALTYRE 60

Query: 61  VISILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSVRDEEAK 120
           VISILMQRH+ VDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHS++DEEAK
Sbjct: 61  VISILMQRHIQVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIKDEEAK 120

Query: 121 FKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLDSNKIADFIKFDVGNV 180
           FKLCKVRS+QFGQKGIPYLNTYDGRTIRYPDPLIK NDTIKLDL+ NKI +FIKFDVGNV
Sbjct: 121 FKLCKVRSIQFGQKGIPYLNTYDGRTIRYPDPLIKPNDTIKLDLEENKIVEFIKFDVGNV 180

Query: 181 VMVTGGRNRGRVGVIKNREKHKGSFETIHIQDATGHEFATRLGNVFTIGKGTKPWVSLPK 240
           VMVTGGRNRGRVGVIKNREKHKGSFETIHIQD+TGHEFATRLGNV+TIGKGTKPWVSLPK
Sbjct: 181 VMVTGGRNRGRVGVIKNREKHKGSFETIHIQDSTGHEFATRLGNVYTIGKGTKPWVSLPK 240

Query: 241 GKGIKLSIIEEARKRLANQAA 262
           GKGIKL+IIEEARKRLA+Q A
Sbjct: 241 GKGIKLTIIEEARKRLASQQA 261

[Close]

BLAST of Cp4.1LG01g17440 vs. Swiss-Prot
Match: RS4_SOLTU (40S ribosomal protein S4 OS=Solanum tuberosum GN=RPS4 PE=2 SV=1)

HSP 1 Score: 507.7 bits (1306), Expect = 7.8e-143
Identity = 244/261 (93.49%), Postives = 257/261 (98.47%), Query Frame = 1


Query: 1   MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE 60
           MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPL++I+RNRLKYALTYRE
Sbjct: 1   MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVIIMRNRLKYALTYRE 60

Query: 61  VISILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSVRDEEAK 120
           VISILMQR V+VDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHS+RDEE+K
Sbjct: 61  VISILMQRQVMVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEESK 120

Query: 121 FKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLDSNKIADFIKFDVGNV 180
           FKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDL+SNKI DFIKFDVGNV
Sbjct: 121 FKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLESNKIVDFIKFDVGNV 180

Query: 181 VMVTGGRNRGRVGVIKNREKHKGSFETIHIQDATGHEFATRLGNVFTIGKGTKPWVSLPK 240
           VMVTGGRNRGRVGVIKNREKHKGSFET+HIQD+ GHEFATRLGNVFT+GKGTKPWVSLPK
Sbjct: 181 VMVTGGRNRGRVGVIKNREKHKGSFETLHIQDSQGHEFATRLGNVFTLGKGTKPWVSLPK 240

Query: 241 GKGIKLSIIEEARKRLANQAA 262
           GKGIKL+IIE+ARKRLA Q+A
Sbjct: 241 GKGIKLTIIEDARKRLAAQSA 261

[Close]

BLAST of Cp4.1LG01g17440 vs. Swiss-Prot
Match: RS41_ARATH (40S ribosomal protein S4-1 OS=Arabidopsis thaliana GN=RPS4A PE=2 SV=1)

HSP 1 Score: 506.9 bits (1304), Expect = 1.3e-142
Identity = 243/261 (93.10%), Postives = 255/261 (97.70%), Query Frame = 1


Query: 1   MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE 60
           MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPL+LI+RNRLKYALTYRE
Sbjct: 1   MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVLIIRNRLKYALTYRE 60

Query: 61  VISILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSVRDEEAK 120
           VISILMQRH+ VDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHS++DEEAK
Sbjct: 61  VISILMQRHIQVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIKDEEAK 120

Query: 121 FKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLDSNKIADFIKFDVGNV 180
           FKLCKVRS+QFGQKGIPYLNTYDGRTIRYPDPLIK NDTIKLDL+ NKI +FIKFDVGNV
Sbjct: 121 FKLCKVRSIQFGQKGIPYLNTYDGRTIRYPDPLIKPNDTIKLDLEENKIVEFIKFDVGNV 180

Query: 181 VMVTGGRNRGRVGVIKNREKHKGSFETIHIQDATGHEFATRLGNVFTIGKGTKPWVSLPK 240
           VMVTGGRNRGRVGVIKNREKHKGSFETIHIQD+TGHEFATRLGNV+TIGKGTKPWVSLPK
Sbjct: 181 VMVTGGRNRGRVGVIKNREKHKGSFETIHIQDSTGHEFATRLGNVYTIGKGTKPWVSLPK 240

Query: 241 GKGIKLSIIEEARKRLANQAA 262
           GKGIKL+IIEEARKRL+ Q A
Sbjct: 241 GKGIKLTIIEEARKRLSAQQA 261

[Close]

BLAST of Cp4.1LG01g17440 vs. Swiss-Prot
Match: RS4_GOSHI (40S ribosomal protein S4 OS=Gossypium hirsutum GN=RPS4 PE=2 SV=1)

HSP 1 Score: 499.2 bits (1284), Expect = 2.8e-140
Identity = 243/261 (93.10%), Postives = 252/261 (96.55%), Query Frame = 1


Query: 1   MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE 60
           MARGLKKHLKRLNAP+HWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE
Sbjct: 1   MARGLKKHLKRLNAPRHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE 60

Query: 61  VISILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSVRDEEAK 120
           VI+ILMQRHV+VDGKVRTDKTYPAGFMDVVSIPKTNE+FRLLYDTKGRF LH++  +E K
Sbjct: 61  VIAILMQRHVMVDGKVRTDKTYPAGFMDVVSIPKTNEDFRLLYDTKGRFCLHAITGDETK 120

Query: 121 FKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLDSNKIADFIKFDVGNV 180
           FKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDL+SNKI DFIKFDVGNV
Sbjct: 121 FKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLESNKIVDFIKFDVGNV 180

Query: 181 VMVTGGRNRGRVGVIKNREKHKGSFETIHIQDATGHEFATRLGNVFTIGKGTKPWVSLPK 240
           VMVTGGRNRGRVGVIKNREKHKGSFETIH+QDA GHEFATRLGNVFTIGKGTKPWVSLPK
Sbjct: 181 VMVTGGRNRGRVGVIKNREKHKGSFETIHVQDAAGHEFATRLGNVFTIGKGTKPWVSLPK 240

Query: 241 GKGIKLSIIEEARKRLANQAA 262
            KGIKLSIIEEARKRLA Q A
Sbjct: 241 RKGIKLSIIEEARKRLAAQNA 261

[Close]

BLAST of Cp4.1LG01g17440 vs. TrEMBL
Match: A0A0A0K4K7_CUCSA (40S ribosomal protein S4 OS=Cucumis sativus GN=Csa_7G282410 PE=3 SV=1)

HSP 1 Score: 523.9 bits (1348), Expect = 1.2e-145
Identity = 256/263 (97.34%), Postives = 263/263 (100.00%), Query Frame = 1


Query: 1   MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE 60
           MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE
Sbjct: 1   MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE 60

Query: 61  VISILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSVRDEEAK 120
           VI+ILMQRHVLVDGKVRTDKT+PAGFMDVVSIPKT+ENFRLLYDTKGRFRLHSVRDEEAK
Sbjct: 61  VIAILMQRHVLVDGKVRTDKTFPAGFMDVVSIPKTSENFRLLYDTKGRFRLHSVRDEEAK 120

Query: 121 FKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLDSNKIADFIKFDVGNV 180
           +KLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDL+SNKIADFIKFDVGNV
Sbjct: 121 YKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLESNKIADFIKFDVGNV 180

Query: 181 VMVTGGRNRGRVGVIKNREKHKGSFETIHIQDATGHEFATRLGNVFTIGKGTKPWVSLPK 240
           VMVTGGRNRGRVGVIKNREKHKGSFETIHIQDATGHEFATRLGNVFT+GKGTKPWVSLPK
Sbjct: 181 VMVTGGRNRGRVGVIKNREKHKGSFETIHIQDATGHEFATRLGNVFTVGKGTKPWVSLPK 240

Query: 241 GKGIKLSIIEEARKRLANQAAVT 264
           GKGIKLSIIEEARKRLA+QAAVT
Sbjct: 241 GKGIKLSIIEEARKRLASQAAVT 263

[Close]

BLAST of Cp4.1LG01g17440 vs. TrEMBL
Match: A0A0A0K3Y8_CUCSA (40S ribosomal protein S4 OS=Cucumis sativus GN=Csa_7G281390 PE=3 SV=1)

HSP 1 Score: 522.3 bits (1344), Expect = 3.4e-145
Identity = 256/263 (97.34%), Postives = 261/263 (99.24%), Query Frame = 1


Query: 1   MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE 60
           MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE
Sbjct: 1   MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE 60

Query: 61  VISILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSVRDEEAK 120
           VI+ILMQRHVLVDGKVRTDKT+PAGFMDVVSIPKTNENFRLLYDTKGRFRLHSVRDEEAK
Sbjct: 61  VIAILMQRHVLVDGKVRTDKTFPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSVRDEEAK 120

Query: 121 FKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLDSNKIADFIKFDVGNV 180
           +KLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDL+SNKIADFIKFDVGNV
Sbjct: 121 YKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLESNKIADFIKFDVGNV 180

Query: 181 VMVTGGRNRGRVGVIKNREKHKGSFETIHIQDATGHEFATRLGNVFTIGKGTKPWVSLPK 240
           VMVTGGRNRGRVGVIKNREKH GSFETIHIQDATGHEFATRLGNVFTIGKGTKPWVSLPK
Sbjct: 181 VMVTGGRNRGRVGVIKNREKHTGSFETIHIQDATGHEFATRLGNVFTIGKGTKPWVSLPK 240

Query: 241 GKGIKLSIIEEARKRLANQAAVT 264
           GKGIKLSIIEEARKRLA+QA VT
Sbjct: 241 GKGIKLSIIEEARKRLASQATVT 263

[Close]

BLAST of Cp4.1LG01g17440 vs. TrEMBL
Match: A0A0A0KQK7_CUCSA (40S ribosomal protein S4 OS=Cucumis sativus GN=Csa_5G212590 PE=3 SV=1)

HSP 1 Score: 521.9 bits (1343), Expect = 4.4e-145
Identity = 255/263 (96.96%), Postives = 262/263 (99.62%), Query Frame = 1


Query: 1   MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE 60
           MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE
Sbjct: 1   MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE 60

Query: 61  VISILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSVRDEEAK 120
           VI+ILMQRHVLVD KVRTDKTYPAGFMDVVSIPKT+ENFRLLYDTKGRFRLHS+RDEEAK
Sbjct: 61  VIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTSENFRLLYDTKGRFRLHSIRDEEAK 120

Query: 121 FKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLDSNKIADFIKFDVGNV 180
           FKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDL+SNKIADFIKFDVGNV
Sbjct: 121 FKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLESNKIADFIKFDVGNV 180

Query: 181 VMVTGGRNRGRVGVIKNREKHKGSFETIHIQDATGHEFATRLGNVFTIGKGTKPWVSLPK 240
           VMVTGGRNRGRVGVIKNREKHKGSFETIHIQDATGHEFATRLGNVFTIGKGTKPWVSLPK
Sbjct: 181 VMVTGGRNRGRVGVIKNREKHKGSFETIHIQDATGHEFATRLGNVFTIGKGTKPWVSLPK 240

Query: 241 GKGIKLSIIEEARKRLANQAAVT 264
           GKGIKL+IIEEARKRLA+Q+AVT
Sbjct: 241 GKGIKLTIIEEARKRLASQSAVT 263

[Close]

BLAST of Cp4.1LG01g17440 vs. TrEMBL
Match: A0A067K6J4_JATCU (40S ribosomal protein S4 OS=Jatropha curcas GN=JCGZ_16213 PE=3 SV=1)

HSP 1 Score: 517.7 bits (1332), Expect = 8.3e-144
Identity = 253/262 (96.56%), Postives = 257/262 (98.09%), Query Frame = 1


Query: 1   MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE 60
           MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE
Sbjct: 1   MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE 60

Query: 61  VISILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSVRDEEAK 120
           VI+ILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHS+RD+EAK
Sbjct: 61  VIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDDEAK 120

Query: 121 FKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLDSNKIADFIKFDVGNV 180
           FKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDL+SNKI DFIKFDVGNV
Sbjct: 121 FKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLESNKITDFIKFDVGNV 180

Query: 181 VMVTGGRNRGRVGVIKNREKHKGSFETIHIQDATGHEFATRLGNVFTIGKGTKPWVSLPK 240
           VMVTGGRNRGRVGVIKNREKHKGSFETIHIQDATGHEFATRLGNVFTIGKGTKPWVSLPK
Sbjct: 181 VMVTGGRNRGRVGVIKNREKHKGSFETIHIQDATGHEFATRLGNVFTIGKGTKPWVSLPK 240

Query: 241 GKGIKLSIIEEARKRLANQAAV 263
           GKGIKLSIIEEARKRLA    V
Sbjct: 241 GKGIKLSIIEEARKRLATAQTV 262

[Close]

BLAST of Cp4.1LG01g17440 vs. TrEMBL
Match: A0A067L9J7_JATCU (40S ribosomal protein S4 OS=Jatropha curcas GN=JCGZ_17463 PE=3 SV=1)

HSP 1 Score: 516.5 bits (1329), Expect = 1.9e-143
Identity = 257/264 (97.35%), Postives = 259/264 (98.11%), Query Frame = 1


Query: 1   MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE 60
           MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE
Sbjct: 1   MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE 60

Query: 61  VISILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSVRDEEAK 120
           VI+ILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSVRDEEAK
Sbjct: 61  VIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSVRDEEAK 120

Query: 121 FKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLDSNKIADFIKFDVGNV 180
           FKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDL+SNKI DFIKFDVGNV
Sbjct: 121 FKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLESNKITDFIKFDVGNV 180

Query: 181 VMVTGGRNRGRVGVIKNREKHKGSFETIHIQDATGHEFATRLGNVFTIGKGTKPWVSLPK 240
           VMVTGGRNRGRVGVIKNREKHKGSFETIHIQDATGHEFATRLGNVFTIGKGTKPWVSLPK
Sbjct: 181 VMVTGGRNRGRVGVIKNREKHKGSFETIHIQDATGHEFATRLGNVFTIGKGTKPWVSLPK 240

Query: 241 GKGIKLSIIEEARKRLANQAAVTV 265
           GKGIKLSIIEEARKR A  AA TV
Sbjct: 241 GKGIKLSIIEEARKRQA-AAAQTV 263

[Close]

BLAST of Cp4.1LG01g17440 vs. TAIR10
Match: AT5G58420.1 (AT5G58420.1 Ribosomal protein S4 (RPS4A) family protein)

HSP 1 Score: 509.6 bits (1311), Expect = 1.2e-144
Identity = 244/261 (93.49%), Postives = 257/261 (98.47%), Query Frame = 1


Query: 1   MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE 60
           MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPL+LI+RNRLKYALTYRE
Sbjct: 1   MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVLIIRNRLKYALTYRE 60

Query: 61  VISILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSVRDEEAK 120
           VISILMQRH+ VDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHS++DEEAK
Sbjct: 61  VISILMQRHIQVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIKDEEAK 120

Query: 121 FKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLDSNKIADFIKFDVGNV 180
           FKLCKVRS+QFGQKGIPYLNTYDGRTIRYPDPLIK NDTIKLDL++NKI +FIKFDVGNV
Sbjct: 121 FKLCKVRSIQFGQKGIPYLNTYDGRTIRYPDPLIKPNDTIKLDLEANKIVEFIKFDVGNV 180

Query: 181 VMVTGGRNRGRVGVIKNREKHKGSFETIHIQDATGHEFATRLGNVFTIGKGTKPWVSLPK 240
           VMVTGGRNRGRVGVIKNREKHKGSFETIHIQD+TGHEFATRLGNV+TIGKGTKPWVSLPK
Sbjct: 181 VMVTGGRNRGRVGVIKNREKHKGSFETIHIQDSTGHEFATRLGNVYTIGKGTKPWVSLPK 240

Query: 241 GKGIKLSIIEEARKRLANQAA 262
           GKGIKL+IIEEARKRLA+Q A
Sbjct: 241 GKGIKLTIIEEARKRLASQQA 261

[Close]

BLAST of Cp4.1LG01g17440 vs. TAIR10
Match: AT5G07090.1 (AT5G07090.1 Ribosomal protein S4 (RPS4A) family protein)

HSP 1 Score: 509.2 bits (1310), Expect = 1.5e-144
Identity = 244/261 (93.49%), Postives = 256/261 (98.08%), Query Frame = 1


Query: 1   MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE 60
           MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPL+LI+RNRLKYALTYRE
Sbjct: 1   MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVLIIRNRLKYALTYRE 60

Query: 61  VISILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSVRDEEAK 120
           VISILMQRH+ VDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHS++DEEAK
Sbjct: 61  VISILMQRHIQVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIKDEEAK 120

Query: 121 FKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLDSNKIADFIKFDVGNV 180
           FKLCKVRS+QFGQKGIPYLNTYDGRTIRYPDPLIK NDTIKLDL+ NKI +FIKFDVGNV
Sbjct: 121 FKLCKVRSIQFGQKGIPYLNTYDGRTIRYPDPLIKPNDTIKLDLEENKIVEFIKFDVGNV 180

Query: 181 VMVTGGRNRGRVGVIKNREKHKGSFETIHIQDATGHEFATRLGNVFTIGKGTKPWVSLPK 240
           VMVTGGRNRGRVGVIKNREKHKGSFETIHIQD+TGHEFATRLGNV+TIGKGTKPWVSLPK
Sbjct: 181 VMVTGGRNRGRVGVIKNREKHKGSFETIHIQDSTGHEFATRLGNVYTIGKGTKPWVSLPK 240

Query: 241 GKGIKLSIIEEARKRLANQAA 262
           GKGIKL+IIEEARKRLA+Q A
Sbjct: 241 GKGIKLTIIEEARKRLASQQA 261

[Close]

BLAST of Cp4.1LG01g17440 vs. TAIR10
Match: AT2G17360.1 (AT2G17360.1 Ribosomal protein S4 (RPS4A) family protein)

HSP 1 Score: 506.9 bits (1304), Expect = 7.5e-144
Identity = 243/261 (93.10%), Postives = 255/261 (97.70%), Query Frame = 1


Query: 1   MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE 60
           MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPL+LI+RNRLKYALTYRE
Sbjct: 1   MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVLIIRNRLKYALTYRE 60

Query: 61  VISILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSVRDEEAK 120
           VISILMQRH+ VDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHS++DEEAK
Sbjct: 61  VISILMQRHIQVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIKDEEAK 120

Query: 121 FKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLDSNKIADFIKFDVGNV 180
           FKLCKVRS+QFGQKGIPYLNTYDGRTIRYPDPLIK NDTIKLDL+ NKI +FIKFDVGNV
Sbjct: 121 FKLCKVRSIQFGQKGIPYLNTYDGRTIRYPDPLIKPNDTIKLDLEENKIVEFIKFDVGNV 180

Query: 181 VMVTGGRNRGRVGVIKNREKHKGSFETIHIQDATGHEFATRLGNVFTIGKGTKPWVSLPK 240
           VMVTGGRNRGRVGVIKNREKHKGSFETIHIQD+TGHEFATRLGNV+TIGKGTKPWVSLPK
Sbjct: 181 VMVTGGRNRGRVGVIKNREKHKGSFETIHIQDSTGHEFATRLGNVYTIGKGTKPWVSLPK 240

Query: 241 GKGIKLSIIEEARKRLANQAA 262
           GKGIKL+IIEEARKRL+ Q A
Sbjct: 241 GKGIKLTIIEEARKRLSAQQA 261

[Close]

BLAST of Cp4.1LG01g17440 vs. NCBI nr
Match: gi|449465362|ref|XP_004150397.1| (PREDICTED: 40S ribosomal protein S4-3 [Cucumis sativus])

HSP 1 Score: 523.9 bits (1348), Expect = 1.7e-145
Identity = 256/263 (97.34%), Postives = 263/263 (100.00%), Query Frame = 1


Query: 1   MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE 60
           MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE
Sbjct: 1   MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE 60

Query: 61  VISILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSVRDEEAK 120
           VI+ILMQRHVLVDGKVRTDKT+PAGFMDVVSIPKT+ENFRLLYDTKGRFRLHSVRDEEAK
Sbjct: 61  VIAILMQRHVLVDGKVRTDKTFPAGFMDVVSIPKTSENFRLLYDTKGRFRLHSVRDEEAK 120

Query: 121 FKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLDSNKIADFIKFDVGNV 180
           +KLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDL+SNKIADFIKFDVGNV
Sbjct: 121 YKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLESNKIADFIKFDVGNV 180

Query: 181 VMVTGGRNRGRVGVIKNREKHKGSFETIHIQDATGHEFATRLGNVFTIGKGTKPWVSLPK 240
           VMVTGGRNRGRVGVIKNREKHKGSFETIHIQDATGHEFATRLGNVFT+GKGTKPWVSLPK
Sbjct: 181 VMVTGGRNRGRVGVIKNREKHKGSFETIHIQDATGHEFATRLGNVFTVGKGTKPWVSLPK 240

Query: 241 GKGIKLSIIEEARKRLANQAAVT 264
           GKGIKLSIIEEARKRLA+QAAVT
Sbjct: 241 GKGIKLSIIEEARKRLASQAAVT 263

[Close]

BLAST of Cp4.1LG01g17440 vs. NCBI nr
Match: gi|659123052|ref|XP_008461463.1| (PREDICTED: 40S ribosomal protein S4-3-like [Cucumis melo])

HSP 1 Score: 523.1 bits (1346), Expect = 2.9e-145
Identity = 256/263 (97.34%), Postives = 263/263 (100.00%), Query Frame = 1


Query: 1   MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE 60
           MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE
Sbjct: 1   MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE 60

Query: 61  VISILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSVRDEEAK 120
           VI+ILMQRHVLVDGKVRTDKT+PAGFMDVVSIPKT+ENFRLLYDTKGRFRLHSVRDEEAK
Sbjct: 61  VIAILMQRHVLVDGKVRTDKTFPAGFMDVVSIPKTSENFRLLYDTKGRFRLHSVRDEEAK 120

Query: 121 FKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLDSNKIADFIKFDVGNV 180
           +KLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDL+SNKIADFIKFDVGNV
Sbjct: 121 YKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLESNKIADFIKFDVGNV 180

Query: 181 VMVTGGRNRGRVGVIKNREKHKGSFETIHIQDATGHEFATRLGNVFTIGKGTKPWVSLPK 240
           VMVTGGRNRGRVGVIKNREKHKGSFETIHIQDATGHEFATRLGNVFTIGKGTKPWVS+PK
Sbjct: 181 VMVTGGRNRGRVGVIKNREKHKGSFETIHIQDATGHEFATRLGNVFTIGKGTKPWVSVPK 240

Query: 241 GKGIKLSIIEEARKRLANQAAVT 264
           GKGIKLSIIEEARKRLA+QAAVT
Sbjct: 241 GKGIKLSIIEEARKRLASQAAVT 263

[Close]

BLAST of Cp4.1LG01g17440 vs. NCBI nr
Match: gi|659109681|ref|XP_008454823.1| (PREDICTED: 40S ribosomal protein S4-3 [Cucumis melo])

HSP 1 Score: 523.1 bits (1346), Expect = 2.9e-145
Identity = 256/263 (97.34%), Postives = 262/263 (99.62%), Query Frame = 1


Query: 1   MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE 60
           MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE
Sbjct: 1   MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE 60

Query: 61  VISILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSVRDEEAK 120
           VI+ILMQRHVLVD KVRTDKTYPAGFMDVVSIPKT+ENFRLLYDTKGRFRLHS+RDEEAK
Sbjct: 61  VIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTSENFRLLYDTKGRFRLHSIRDEEAK 120

Query: 121 FKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLDSNKIADFIKFDVGNV 180
           FKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDL+SNKIADFIKFDVGNV
Sbjct: 121 FKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLESNKIADFIKFDVGNV 180

Query: 181 VMVTGGRNRGRVGVIKNREKHKGSFETIHIQDATGHEFATRLGNVFTIGKGTKPWVSLPK 240
           VMVTGGRNRGRVGVIKNREKHKGSFETIHIQDATGHEFATRLGNVFTIGKGTKPWVSLPK
Sbjct: 181 VMVTGGRNRGRVGVIKNREKHKGSFETIHIQDATGHEFATRLGNVFTIGKGTKPWVSLPK 240

Query: 241 GKGIKLSIIEEARKRLANQAAVT 264
           GKGIKL+IIEEARKRLA+QAAVT
Sbjct: 241 GKGIKLTIIEEARKRLASQAAVT 263

[Close]

BLAST of Cp4.1LG01g17440 vs. NCBI nr
Match: gi|659123125|ref|XP_008461503.1| (PREDICTED: 40S ribosomal protein S4-3-like [Cucumis melo])

HSP 1 Score: 523.1 bits (1346), Expect = 2.9e-145
Identity = 255/263 (96.96%), Postives = 263/263 (100.00%), Query Frame = 1


Query: 1   MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE 60
           MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE
Sbjct: 1   MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE 60

Query: 61  VISILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSVRDEEAK 120
           VI+ILMQRHVLVDGKVRTDKT+PAGFMD++SIPKTNENFRLLYDTKGRFRLHSVRDEEAK
Sbjct: 61  VIAILMQRHVLVDGKVRTDKTFPAGFMDILSIPKTNENFRLLYDTKGRFRLHSVRDEEAK 120

Query: 121 FKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLDSNKIADFIKFDVGNV 180
           +KLCKVRSVQFGQKGIPYLNT+DGRTIRYPDPLIKANDTIKLDL+SNKIADFIKFDVGNV
Sbjct: 121 YKLCKVRSVQFGQKGIPYLNTFDGRTIRYPDPLIKANDTIKLDLESNKIADFIKFDVGNV 180

Query: 181 VMVTGGRNRGRVGVIKNREKHKGSFETIHIQDATGHEFATRLGNVFTIGKGTKPWVSLPK 240
           VMVTGGRNRGRVGVIKNREKHKGSFETIHIQDATGHEFATRLGNVFTIGKGTKPWVSLPK
Sbjct: 181 VMVTGGRNRGRVGVIKNREKHKGSFETIHIQDATGHEFATRLGNVFTIGKGTKPWVSLPK 240

Query: 241 GKGIKLSIIEEARKRLANQAAVT 264
           GKGIKLSIIEEARKRLA+QAAVT
Sbjct: 241 GKGIKLSIIEEARKRLASQAAVT 263

[Close]

BLAST of Cp4.1LG01g17440 vs. NCBI nr
Match: gi|778726350|ref|XP_004150395.2| (PREDICTED: 40S ribosomal protein S4-3-like [Cucumis sativus])

HSP 1 Score: 522.3 bits (1344), Expect = 4.9e-145
Identity = 256/263 (97.34%), Postives = 261/263 (99.24%), Query Frame = 1


Query: 1   MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE 60
           MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE
Sbjct: 1   MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE 60

Query: 61  VISILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSVRDEEAK 120
           VI+ILMQRHVLVDGKVRTDKT+PAGFMDVVSIPKTNENFRLLYDTKGRFRLHSVRDEEAK
Sbjct: 61  VIAILMQRHVLVDGKVRTDKTFPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSVRDEEAK 120

Query: 121 FKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLDSNKIADFIKFDVGNV 180
           +KLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDL+SNKIADFIKFDVGNV
Sbjct: 121 YKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLESNKIADFIKFDVGNV 180

Query: 181 VMVTGGRNRGRVGVIKNREKHKGSFETIHIQDATGHEFATRLGNVFTIGKGTKPWVSLPK 240
           VMVTGGRNRGRVGVIKNREKH GSFETIHIQDATGHEFATRLGNVFTIGKGTKPWVSLPK
Sbjct: 181 VMVTGGRNRGRVGVIKNREKHTGSFETIHIQDATGHEFATRLGNVFTIGKGTKPWVSLPK 240

Query: 241 GKGIKLSIIEEARKRLANQAAVT 264
           GKGIKLSIIEEARKRLA+QA VT
Sbjct: 241 GKGIKLSIIEEARKRLASQATVT 263

The following BLAST results are available for this feature:

BLAST of Cp4.1LG01g17440 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RS43_ARATH	2.0e-143	93.49	40S ribosomal protein S4-3 OS=Arabidopsis thaliana GN=RPS4D PE=2 SV=2	[more]
RS42_ARATH	2.7e-143	93.49	40S ribosomal protein S4-2 OS=Arabidopsis thaliana GN=RPS4B PE=2 SV=4	[more]
RS4_SOLTU	7.8e-143	93.49	40S ribosomal protein S4 OS=Solanum tuberosum GN=RPS4 PE=2 SV=1	[more]
RS41_ARATH	1.3e-142	93.10	40S ribosomal protein S4-1 OS=Arabidopsis thaliana GN=RPS4A PE=2 SV=1	[more]
RS4_GOSHI	2.8e-140	93.10	40S ribosomal protein S4 OS=Gossypium hirsutum GN=RPS4 PE=2 SV=1	[more]

BLAST of Cp4.1LG01g17440 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K4K7_CUCSA	1.2e-145	97.34	40S ribosomal protein S4 OS=Cucumis sativus GN=Csa_7G282410 PE=3 SV=1	[more]
A0A0A0K3Y8_CUCSA	3.4e-145	97.34	40S ribosomal protein S4 OS=Cucumis sativus GN=Csa_7G281390 PE=3 SV=1	[more]
A0A0A0KQK7_CUCSA	4.4e-145	96.96	40S ribosomal protein S4 OS=Cucumis sativus GN=Csa_5G212590 PE=3 SV=1	[more]
A0A067K6J4_JATCU	8.3e-144	96.56	40S ribosomal protein S4 OS=Jatropha curcas GN=JCGZ_16213 PE=3 SV=1	[more]
A0A067L9J7_JATCU	1.9e-143	97.35	40S ribosomal protein S4 OS=Jatropha curcas GN=JCGZ_17463 PE=3 SV=1	[more]

BLAST of Cp4.1LG01g17440 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G58420.1	1.2e-144	93.49	Ribosomal protein S4 (RPS4A) family protein	[more]
AT5G07090.1	1.5e-144	93.49	Ribosomal protein S4 (RPS4A) family protein	[more]
AT2G17360.1	7.5e-144	93.10	Ribosomal protein S4 (RPS4A) family protein	[more]

BLAST of Cp4.1LG01g17440 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449465362\|ref\|XP_004150397.1\|	1.7e-145	97.34	PREDICTED: 40S ribosomal protein S4-3 [Cucumis sativus]	[more]
gi\|659123052\|ref\|XP_008461463.1\|	2.9e-145	97.34	PREDICTED: 40S ribosomal protein S4-3-like [Cucumis melo]	[more]
gi\|659109681\|ref\|XP_008454823.1\|	2.9e-145	97.34	PREDICTED: 40S ribosomal protein S4-3 [Cucumis melo]	[more]
gi\|659123125\|ref\|XP_008461503.1\|	2.9e-145	96.96	PREDICTED: 40S ribosomal protein S4-3-like [Cucumis melo]	[more]
gi\|778726350\|ref\|XP_004150395.2\|	4.9e-145	97.34	PREDICTED: 40S ribosomal protein S4-3-like [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0003723	RNA binding
GO:0003735	structural constituent of ribosome

Vocabulary: **Biological Process**
Term	Definition
GO:0006412	translation

Vocabulary: **Cellular Component**
Term	Definition
GO:0005840	ribosome
GO:0005622	intracellular

Vocabulary: **INTERPRO**
Term	Definition
IPR018199	Ribosomal_S4e_N_CS
IPR013845	Ribosomal_S4e_central_region
IPR013843	Ribosomal_S4e_N
IPR005824	KOW
IPR002942	S4_RNA-bd
IPR000876	Ribosomal_S4e

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0006412	translation
cellular_component	GO:0005840	ribosome
cellular_component	GO:0005622	intracellular
molecular_function	GO:0019843	rRNA binding
molecular_function	GO:0003735	structural constituent of ribosome
molecular_function	GO:0003723	RNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG01g17440.1	Cp4.1LG01g17440.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000876	Ribosomal protein S4e	HAMAP	MF_00485	Ribosomal_S4e	coord: 7..238 score: 36
IPR000876	Ribosomal protein S4e	PIR	PIRSF002116	RPS4a_RPS4e	coord: 1..241 score: 1.3
IPR000876	Ribosomal protein S4e	PANTHER	PTHR11581	30S/40S RIBOSOMAL PROTEIN S4	coord: 2..264 score: 2.9E
IPR002942	RNA-binding S4 domain	PFAM	PF01479	S4	coord: 47..90 score: 4.
IPR002942	RNA-binding S4 domain	SMART	SM00363	s4_6	coord: 42..106 score: 9.
IPR002942	RNA-binding S4 domain	PROFILE	PS50889	S4	coord: 42..104 score: 9
IPR005824	KOW	PFAM	PF00467	KOW	coord: 177..210 score: 1.
IPR005824	KOW	SMART	SM00739	kow_9	coord: 174..201 score: 7.
IPR013843	Ribosomal protein S4e, N-terminal	PFAM	PF08071	RS4NT	coord: 3..39 score: 1.3
IPR013845	Ribosomal protein S4e, central region	PRODOM	PD002667		coord: 87..176 score: 3.0
IPR013845	Ribosomal protein S4e, central region	PFAM	PF00900	Ribosomal_S4e	coord: 95..169 score: 8.5
IPR018199	Ribosomal protein S4e, N-terminal, conserved site	PROSITE	PS00528	RIBOSOMAL_S4E	coord: 8..22 scor
None	No IPR available	PANTHER	PTHR11581:SF11	SUBFAMILY NOT NAMED	coord: 2..264 score: 2.9E

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cp4.1LG01g17440	Cucurbita maxima (Rimu)	cmacpeB721
Cp4.1LG01g17440	Cucurbita maxima (Rimu)	cmacpeB725
Cp4.1LG01g17440	Cucurbita moschata (Rifu)	cmocpeB673
Cp4.1LG01g17440	Cucurbita moschata (Rifu)	cmocpeB677
Cp4.1LG01g17440	Cucurbita moschata (Rifu)	cmocpeB680
Cp4.1LG01g17440	Cucurbita moschata (Rifu)	cmocpeB682
Cp4.1LG01g17440	Cucurbita moschata (Rifu)	cmocpeB686
Cp4.1LG01g17440	Wild cucumber (PI 183967)	cpecpiB453
Cp4.1LG01g17440	Cucumber (Chinese Long) v2	cpecuB448
Cp4.1LG01g17440	Bottle gourd (USVL1VR-Ls)	cpelsiB321
Cp4.1LG01g17440	Melon (DHL92) v3.5.1	cpemeB371
Cp4.1LG01g17440	Melon (DHL92) v3.6.1	cpemedB429
Cp4.1LG01g17440	Wax gourd	cpewgoB0540