Cp4.1LG01g17010 (gene) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG01g17010
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	Calcium-binding EF-hand family protein, putative
Location	Cp4.1LG01 : 10982963 .. 10993787 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

CATTGGTATAACAATGTTTATCCCCAAACTTCAAGCTTCCACGGCTAAGTATGAAGCAAGTGAGATGATCAAAAAGTGTACTAGAAATGGTGATAATGTTCAACTAAAAGCTTTTAGTGGCATTGCTCGAGCTTCAACTCAAGTCAACAATCAAGGTATGGTATCGGAAATCTTTAGAGATAATAAGAATGTCGGGCCCAAGCTTAGTTCAAATACTCAACTAAAGGCATCTACTATGCAATTTAGTCGAGAGCAGATGAAGAAGATTTTTAAATATCATGATAGCGATAAGGATGGTTTTCTCAACCTAAGGGAGCTAACAAAAGCTTTTGCTTTTCTAGGCTCAATTATTCCATTTGAGAAAGCTTCCTATGGCATGTCATATGCTGATGCAGATAAAGATGGCCTTATTAGTGAGTCTTAACTTGACAAACTCATAGATTATGCCCAAAAATTTATGAAGAAGAAATGAGCTTCTAGACTGTGCCCAAAAATGTCCCTTAAACCCCGGCTCAAATGCAAACCGAACAGTTTGGGATGCATATGACAAAAAGGGTAAGGGGAAATATAAGATTCCTACTGACCGCAAACCCAAGGTTCAAAATGCAGATAATGGAAAATGTTTCCATTGAAATGAAAACGGGCACAGGAAAAGTGATTGCCCAAAATACCTTGCGGAGAAGAAGGCTGAAAAGGCACAACATAGTAAATATGATTTACTAGTTGTAGAAATATATTTAGTAGAGTATGATCACTCAACCTGGATACTAGATTCAGGGGCCACTAATCATATTTGTTCTTTTCTTCAAGAAACTAGTTCCTGGAGAATGCTTGCGGAAGGCGAGATAACACTCGGGGTTGGAACAGAAGAAGTTGTCTCAGAAGGATTAGTAGGAAATTTAAAGTTGTTTTTTGGAGATGGATTCATTATATTAGATAATGTACTTTTTGTTCCTAGAATAGAAAGAAATCTAATATCTATCTCTTGTTTATTAGAACAATTATATAAAGTATCTTTTGAAATTAATGAAGTGTTCATTTGCAAAAGAGGTATTCATATTTGTTCTGCAAAACTAGAAAACAACTTATATATGTTAAAATCGAGTGAAACAAAAGCTATTTTAAATATCGTGATGTTTAAAACCGCTGAAACTCAACATAAACGACAAAAGATTTCTCCTAATACCTATTTTTGGCACTTAAGACTAGGTCACATTAATCTCAATAGGATTGAAAGATTGGTTAAAAGAGGACTTCTAAATCAGTTAGAAGACAACTCTTTACCTCCATGTGAGTTCTGTCTTGAGGGTAAAATGACTCAACGACCTTTTTCCGAAAAAGGTTATAGAGCCAAAGAAATCTTACAACTCGTGCATACTGATCTTTGTGGTCCAATAAATGTCAAAGCACGAGGAGGGTATGAATATTTCATCAGTTTTATTGATGATTATTCAAGGTATGACTATATTTACCTAATGCATTACAAGTCCGAAACTCTTGAAAAGTTCAGAGAGTGTAAGACTAAGGTTGAGAATCTATTAGGAAAAACTATTAAAACACTTCGATCAGATCGAGGTGGAGAATATATGGACTTAAGATTCCAGGACTATATGATAGAACATGGAATAACGTCTCAACTCTCAGCCCCTGGTATGCCACAACAGAACGGTGTATCAGAAATGAGAAATAGAACTCTGTTAAATATGGTTCGATCTATGATGAGTTTTGCTCAATTACCTTATTCGTTTTAGGGATATGTAGTGGAGACTGCTGCATACATTTTGAACATGGTTCCTTCTAAGAGTGTTTCAGAAACACCTTATGAGTTATGAGAGTGCGTAAAAGTAGTTTAGGTCACTTCAGGATTTAGGGATGCCCAGCACATGTGTTGGTGGAAAACCTTAAGAAATTAGAACGTCGTTCAAAATTATGCCTATTCGTAGGATATCCCAAAGAGACGAAAAGTGGAATGTTTTATGACCCTCAAGAAAATAGAGTGTTTGTATCAANTCGTGATGTTTAAAACCGCTGAAACTCAACATAAACGACAAAAGATTTCTCCTAATACCTATTTTTGGCACTTAAGACTAGGTCACATTAATCTCAATAGGATTGAAAGATTGGTTAAAAGAGGACTTCTAAATCAGTTAGAAGACAACTCTTTACCTCCATGTGAGTTCTGTCTTGAGGGTAAAATGACTCAACGACCTTTTTCCGAAAAAGGTTATAGAGCCAAAGAAATCTTACAACTCGTGCATACTGATCTTTGTGGTCCAATAAATGTCAAAGCACGAGGAGGGTATGAATATTTCATCAGTTTTATTGATGATTATTCAAGGTATGACTATATTTACCTAATGCATTACAAGTCCGAAACTCTTGAAAAGTTCAGAGAGTGTAAGACTAAGGTTGAGAATCTATTAGGAAAAACTATTAAAACACTTCGATCAGATCGAGGTGGAGAATATATGGACTTAAGATTCCAGGACTATATGATAGAACATGGAATAACGTCTCAACTCTCAGCCCCTGGTATGCCACAACAGAACGGTGTATCAGAAATGAGAAATAGAACTCTGTTAAATATGGTTCGATCTATGATGAGTTTTGCTCAATTACCTTATTCGTTTTAGGGATATGTAGTGGAGACTGCTGCATACATTTTGAACATGGTTCCTTCTAAGAGTGTTTCAGAAACACCTTATGAGTTATGAGAGTGCGTAAAAGTAGTTTAGGTCACTTCAGGATTTAGGGATGCCCAGCACATGTGTTGGTGGAAAACCTTAAGAAATTAGAACGTCGTTCAAAATTATGCCTATTCGTAGGATATCCCAAAGAGACGAAAAGTGGAATGTTTTATGACCCTCAAGAAAATAGAGTGTTTGTATCAACAAGCGCTACATTCTTAGAGGAAGACCTCGTAAGAAATCATCAACCTCGCAGCAAACTAGTATTGAGTGAGATTTCTAAGGAAGCTACTGATAAAACAACAAGAGTTGTTGATCAGGCTGGTTCTTCAACAAGAGTTGTTGATGGAGCTGACACTTCTGGCAATCACATCCTTCTCAAGAGTTGAGAATGCCTCGACGTAGTGGGAGGGTTATAACTCAACATGGTCGTTACTTGGGTTTGGCAGAAACACAGGTCATCATACCTGATGATGGCGTTGAGGATCCATTGACCTATAAATAGGCAATGAATGATGAAGATAGAGATCAGTGGATCAAAGCCATGAATCTTGAAATGGAGTCAATGTACTTCAATTCAGTTTGCGAACTTGTAGATCAACCAGATGGGGTAAAACCTATTGGTTGCAAATGGATCTACAAGAGGAAACGAGACCAAGCCGATAAGGTACAGACCTTTAAAGCTCGACTTGTAGCAAAGAGTTATACCCAAAGAGAGGGGGTAGACTATGAAGAAACCTTCTCTCCTGTTGTTATGCTTAAATCGATTAGAATACTCTTGTCCATTGCCACATTTTATGATTATGAAACTTGGCAAATGGATGTCAAGACTACCTTTCTAAACGACAATCTTAAGGAGAATATCTATATGGCTCAACTAGAAGGGTTCATTGAACAGGATCACGAGCAAAAGGTTTGCAAGCTTAAAAGATCCATTTATGGGTTGAAGCAAGCATCTCGATCCTAGAATATAAGGTTTGGTACTGCGATCAAATCTTATGGCTTTAAACAGAATGTTGACGAACCTTGTGTTTACAAGAAGATAGTCAACTCTACAGTAGTTTTCTTGGTGTTGTACGTTGACGATATCCTACTCATTGGAAATGATGTGGGATTTCTGACTGACATTAAGTATTGGCTAGCGACAGAATTCCAAATGAAAGATTTGGGAGAGGCTCAGTTTGTTCTTGGAATCTAAATTGTTCAGAATCGAAGAACAAAACACTAGCATTGTCTCAGGCATCGTACATCGACAAACTGTTGATTCGATATAAGATGCAGGACTTCAAGAAAGGATTATTACCTTTCAGGCACGGAGTTCATTTGTCAAAGGAACAAAGTCCTAAGACACCTCAAGAAGTTGAGGATATGAGACACATTCCCTATGCATCAGCAGTCGGTAGTCTGATGTATGTCATGCTATGTACCCGATCCGACATATGCTATGCTGTAGAAATTGTCAGCAGATATCAAGTATCTTAGGAGAACGAGGGACTATATGCTAATGTACGGCACTAAGGATCTGATCCTTACAGGGTACACTGACTAAGATTTTCAGACCGATATAGATTTGAGAAAATCAACATCAGAATNACCTTTCTAAACGACAATCTTAAGGAGAATATCTATATGGCTCAACTAGAAGGGTTCATTGAACAGGATCACGAGCAAAAGGTTTGCAAGCTTAAAAGATCCATTTATGGGTTGAAGCAAGCATCTCGATCCTAGAATATAAGGTTTGGTACTGCGATCAAATCTTATGGCTTTAAACAGAATGTTGACGAACCTTGTGTTTACAAGAAGATAGTCAACTCTACAGTAGTTTTCTTGGTGTTGTACGTTGACGATATCCTACTCATTGGAAATGATGTGGGATTTCTGACTGACATTAAGTATTGGCTAGCGACAGAATTCCAAATGAAAGATTTGGGAGAGGCTCAGTTTGTTCTTGGAATCTAAATTGTTCAGAATCGAAGAACAAAACACTAGCATTGTCTCAGGCATCGTACATCGACAAACTGTTGATTCGATATAAGATGCAGGACTTCAAGAAAGGATTATTACCTTTCAGGCACGGAGTTCATTTGTCAAAGGAACAAAGTCCTAAGACACCTCAAGAAGTTGAGGATATGAGACACATTCCCTATGCATCAGCAGTCGGTAGTCTGATGTATGTCATGCTATGTACCCGATCCGACATATGCTATGCTGTAGAAATTGTCAGCAGATATCAAGTATCTTAGGAGAACGAGGGACTATATGCTAATGTACGGCACTAAGGATCTGATCCTTACAGGGTACACTGACTAAGATTTTCAGACCGATATAGATTTGAGAAAATCAACATCAGAATTTGTCTTCACTCTGAACAGAGGAGCAATAATATGGAGAAGCATAAAGCAAGGTTGCATTGCTTTATGCTAATGTACGACACTAAGGATAAATATCCTCAAGTATCTTAGGAGAACGAGGGACTATATGCTAATGTACGGCGCTAAGGATCTGATCCTTACAGGGTACACTGACTAAGATTTTCAGACCGATATAGATTTGAGAAAATCAACATCAGAATTTGTCTTCACTCTGAACAGAGGAGCAATAATATGGAGAAGCATAAAGCAAGGTTGCATTGCTTTATGCTAATGTACGACACTAAGGATAAATATCCTCAAGTATCTTAGGAGAACGAGGGACTATATGCTAATGTACGGCGCTAAGGATCTGATCCTTACAGGGTACACTGACTAAGATTTTCAGACCGATATAGATTTGAGAAAATCAACATCAGAATTTGTCTTCACTCTGAACAGAGGAGCAATAATATGGAGAAGCATAAAGCAAGGTTGCATTGTTGATTCCACTATGGAGGCTGAGTATGTTGCTGCTTGTTTAGCAGCGAAAGAATCAGTATGGCTTTGGAAGTTCTTAACTGATGTGAAAGTCATTCCAAATATGCATCTGCCCATCACTCTTTATTGTGATAACAATGTAGCAGTTGCAAATTCTAAAGAACCAAGAAGCCACAAGCGAGGGAAACATATTGAGTGCAAATATCATCTCCTAAGGGAGATTGTGCAACGAGGAGATGTGATCATCACACAGATAGCTTCTGAGAACAACATTGTTGATCCATTTACAAAGCCCCTCACGGCTAAAGTGTTTGAAGGGCACCTAGTGAGTCTAGGACTACGAGTTATGTAATTTAGGGCAAGTGGGAGAAAATGCATGGGTATGTGATGCCATAGTTCATTGTGTTTATGTCTTTCTCTCTACTCAACATTATAAAACCCCACCAGAGTTTTAGTTCAAGTGGGAGTTTGTTGAATTTTATGTCCTAAAACTCATAGTTTGTAAACAAAAACATATTTTATTTTCAATAAAGTTATTATTGATGTTTATTCATTAAAGATTGTTATTGAATAAAGTGATGTTACGATCATTAATCTAAATCCAATAAACTAAGAAAACTTTGACTATAGTATGATTACTTGAACTATATGTAGAGACATAAGAGTGGATCAAGTTCAAGTATATAGTCAAAATGATCGGTAGTACAGGGATAAGGTTAAGTACCTTATTCTGGGGACACTATGGATGCGGCCCAGTTTTGTATATGATATAAACAATGTGATCACTAAATTGTATATGTGGAGGCATGTGAGTGGGGGCGTTCTATGCAATGAGTATTGCAGAAGATCGGACCATGAAGAAAACCACTCTCACTTTATCATGTCATTTACTGTTGAGACTGATTTTTGCATTCGATGACCTAGGTAACTCCATCTTAATCCTGAGCTAACTATGAACTGCTATTTATCCGAAATTATCCTTAGATTTGCATGGGTGAGAGTGGCCCAAGTTTGCAGACTCAATAAGACTCCCATTTCAGAGGTAAGACTGGGTGAATAGCTGGGGACATAGGGTGTAAGATGGNTGTTACGATCATTAATCTAAATCCAATAAACTAAGAAAACTTTGACTATAGTATGATTACTTGAACTATATGTAGAGACATAAGAGTGGATCAAGTTCAAGTATATAGTCAAAATGATCGGTAGTACAGGGATAAGGTTAAGTACCTTATTCTGGGGACACTATGGATGCGGCCCAGTTTTGTATATGATATAAACAATGTGATCACTAAATTGTATATGTGGAGGCATGTGAGTGGGGGCGTTCTATGCAATGAGTATTGCAGAAGATCGGACCATGAAGAAAACCACTCTCACTTTATCATGTCATTTACTGTTGAGACTGATTTTTGCATTCGATGACCTAGGTAACTCCATCTTAATCCTGAGCTAACTATGAACTGCTATTTATCCGAAATTATCCTTAGATTTGCATGGGTGAGAGTGGCCCAAGTTTGCAGACTCAATAAGACTCCCATTTCAGAGGTAAGACTGGGTGAATAGCTGGGGACATAGGGTGTAAGATGGAATTCACTCCTACCCGCTTTTATGGATAGTAGAGAAGTTGTTCCCTTAAATACTGACTCCAAGTCTTGAACTAGGGGCCCCACCCTCTCATTGGCCTGAGAGGGATTCGATTTGGTGGTTGGACCATAAACCAATTGTTGAGGATTAGTGGGACTTAAGGAACAAAAAATAACTTTAGGGGTAAAACATTAAATTGACCCAACTCTAGTTACGAACAACCTGTGAAGGATTNGCATGTGAGTGGGGGCGTTCTATGCAATGAGTATTGCAGAAGATCGGACCATGAAGAAAACCACTCTCACTTTATCATGTCATTTACTGTTGAGACTGATTTTTGCATTCGATGACCTAGGTAACTCCATCTTAATCCTGAGCTAACTATGAACTGCTATTTATCCGAAATTATCCTTAGATTTGCATGGGTGAGAGTGGCCCAAGTTTGCAGACTCAATAAGACTCCCATTTCAGAGGTAAGACTGGGTGAATAGCTGGGGACATAGGGTGTAAGATGGAATTCACTCCTACCCGCTTTTATGGATAGTAGAGAAGTTGTTCCCTTAAATACTGACTCCAAGTCTTGAACTAGGGGCCCCACCCTCTCATTGGCCTGAGAGGGATTCGATTTGGTGGTTGGACCATAAACCAATTGTTGAGGATTAGTGGGACTTAAGGAACAAAAAATAACTTTAGGGGTAAAACATTAAATTGACCCAACTCTAGTTACGAACAACCTGTGAAGGATTGACTTACTAATCATGGTTATATCAAATGGACAGAAATATATTTATAGTGAGGGGAGTGCAACTACTAGGCTATAGTGGAGTGTCCTAGTAGTTAACGAATGTTGGTTAACAAGGTTAATGAGTTTAGCCGATTAATCTCGGATCGTTGGAGTCCATGATCTGTAGGTCCATTAGGTCCCTCTGCTAGCTCATATCGGACTAAACCTTAGAACAGTATGACAAGTGAGTTTGAAGTGTTCGAATTCAAATTAGGGAATACACTCTAAATATATACGATATATTTAACCACATTTTGTTTTAATTATGAATTGAACAAAAAGAGAGAATTAAATATATTTAAATAAGATTTAAATATTTTAATTCTTAACCGTGATTCATAATCAATATGTGCAAAAATTGGTTGGGTTAAATATTAATTAAATTGTTTAATTAATAATTTAATATTATTTTGATTTGAAATTAATTGTTGAATTAAAATAAAGAAAGTCAAAATGTTGCCTTCACCTAATGGAAAAATTCATGTCTCAGTTAGTGGAAATGTCAATATATGGTTTAACCAAACTTGCATGTTTGCTACATAATCTCAAAATTTTGGGTGGAATTTTGAGTGTCAAAATTTGGTTTGAGTGAAATTTTGAATGTCAATATTTGGTTAACTCAAACTTGCCCACATAATCCCACAAATTTGAGTTGAATTTTGAGTGTCAAAATTTGGTAATCTCAAATTTGCATCAACATGCAAATATGACTCTATAAATTGAGTGATCAAGGTACATGGAAATTCTTCTCGAAAAACTTTGAGAAAATATATCAAAACTCTCTCTTTACGTATACTAAATTCCTATCAAGTTTCATCACTCACCGGATTCCACAATCCCGTTCTAAGGCCGGAGAATAGTAAGGAAGACACTAGTGGTGGTTCGAAACTGTTCGTGAGGAAAAAGAAATTTGAATTAGAAAAGGTTAGTATTCAAACTCATTGAATTTTAATTTTTTTGAACATGCTAGTAATTTACTATAATTGATGTATTTAGAGTGCCTAAGATCCAAATTGCTTCTGCACGTGTTATAGTAACACCATCATATTTATGTATAGAAATGATTACGCCATGATGACGGCGACGACTCTAGGCAAGTAGAAATTTAGAGTCGTTACATCTGTTTTCCTCCAGACGTCGTTACGGAAAGCTAGCTCGACTATGAGGGGTCCAGGGGGTGTGAACCTCCTAGGGATCCACACTCACACGTGTGAGTTGTTTGTAGGCAAGTACTACACATCCAAGTTTGCCTTGACTGGAGGGCACCCCTATGATGGTTTTAATAATAGGTCCTTAATCATGAGTGACATGTATTTGCTTTTCTCAAACTCATAAGTGAGGTCACTTATAGAGTATTTCTTAAAATACTCAAATCATGTGCTTGTTCTATTTCAAGTAAAGCCAAGGAACTCTTGTACGGCTGATGACAGCATCACAAGCTGATACTATGACACATACATAGGATAAGTATATTTATTTTCTTAGACTTATGTTAGAATAGGGTGTTTTTATCATGTTTATTTGTTTTGTTTTGAAATTTATTATGCTCTTTAAAGATATTTTCGAATACGTAAATCTATGACAGTGTTTTATCTTGAAGTTTTAATTGATTATTTCTTCACAAATTAGTCTGTTATATATACGGTAGCGACTTTAGACTATAAAAATCTAGAGCCGTTGCATTAAAACAGCGAGAGTGTTATCTCTTAAAAAAAAAATGAAACAAATTGCACTATGCCATTGAAATAAGAGAATATGTGATGTCTAAAAACTTTTAGCAAAATCTTAGAATTGCCAAGAATAGGGTGCGACATGTATTGCCCAAGAAACTTTGAAATCTACCCAACTTTATTAAAGATATAGATTTCCATAAAGATTTATGTGAGGAAACTTCTATAATCTATTTATTTTCGACATTATTTTTAAGTATTTTATTTCTTTATAAAAATCACGAGTGACGTTTGACATTTTTTTCTTCATTAAAGTTTAAAAGAGAATAAAGGTAAAAAAAATATTTGTTTAACTAAATAATTAATCTTATTGTTTGACTAAATGGTAAATTAAAGTGATTTTTTATTTTTTTTTTCTTTTTAAAATTATGAGTATTAACTAAACGTTTGAAAGTTGAATTGNATTATTAGTATTAAGTTATAACGGTCTTGAAATCACTATTTCAAATCTTATTTAAAGGTAATAAAATCTAGTTAGAGAAAAAGAATCTTCTATTCTTTTTTTCATATGAAACACGTTCTCTACTTCATGTGTAAAGCAATATTTTAAAATATTTTAACAATAATATTTTTTAGTAATATTTTTCCTTGATTCAATGCATCTGAAAGAGGAATAGAGGAATAAGGCAGTAAAAGCAAACCAAGTTTGATTAGTATAAAAGACTAAATATAGGATTGAGGTTTGTTCATCTTCAAACTTTCCTTACAAACAAATATAGCATTGGCATAGAAATGTTTATCCCCAAACTGCAAGCTTCCATGGCTAAGTATGAAGCAAGCGAGATGATCAAGAAGAATACTAGAAATGGTGATAATGTTCAACTAAAAGCTTTTAATGGCATTGCTCGAGCTTCAACCCAAGTCAACAATCAAGGCATGGTACCAGAAATTCTTAGAGATAACAAAAATGTCGGGCCCAAGTTTAGTTCAAATACTCATCTAAAAGCATCAAATATGCAATTTAGTCGAGAGAAGATGAAGGAGATCTTTAGATATCATGATAGTGATAAAGATGGTTTTCTCAATATAAGAGAGCTAACAAAAGCTTTTGCTTTTCTAGGCTCAATTATTCCATTTGAGAAAGCTTCCTATGGCATGACATATGCTGATGCAAATAAAGATGGCCTTATTAGCGAGGCTGAACTTGACAAACTCGTTGATTATGCCCAAAAGTTTATGAAGAAGAAA

mRNA sequence

CATTGGTATAACAATGTTTATCCCCAAACTTCAAGCTTCCACGGCTAAGTATGAAGCAAGTGAGATGATCAAAAAGTGTACTAGAAATGGTGATAATGTTCAACTAAAAGCTTTTAGTGGCATTGCTCGAGCTTCAACTCAAGTCAACAATCAAGGTATGGTATCGGAAATCTTTAGAGATAATAAGAATGTCGGGCCCAAGCTTAGTTCAAATACTCAACTAAAGGCATCTACTATGCAATTTAGTCGAGAGCAGATGAAGAAGATTTTTAAATATCATGATAGCGATAAGGATGGTTTTCTCAACCTAAGGGAGCTAACAAAAGCTTTTGCTTTTCTAGGCTCAATTATTCCATTTGAGAAAGCTTCCTATGGCATGTCATATGCTGATGCAGATAAAGATGGCCTTATTAAAATGTTTATCCCCAAACTGCAAGCTTCCATGGCTAAGTATGAAGCAAGCGAGATGATCAAGAAGAATACTAGAAATGGTGATAATGTTCAACTAAAAGCTTTTAATGGCATTGCTCGAGCTTCAACCCAAGTCAACAATCAAGGCATGGTACCAGAAATTCTTAGAGATAACAAAAATGTCGGGCCCAAGTTTAGTTCAAATACTCATCTAAAAGCATCAAATATGCAATTTAGTCGAGAGAAGATGAAGGAGATCTTTAGATATCATGATAGTGATAAAGATGGTTTTCTCAATATAAGAGAGCTAACAAAAGCTTTTGCTTTTCTAGGCTCAATTATTCCATTTGAGAAAGCTTCCTATGGCATGACATATGCTGATGCAAATAAAGATGGCCTTATTAGCGAGGCTGAACTTGACAAACTCGTTGATTATGCCCAAAAGTTTATGAAGAAGAAA

Coding sequence (CDS)

ATGTTTATCCCCAAACTTCAAGCTTCCACGGCTAAGTATGAAGCAAGTGAGATGATCAAAAAGTGTACTAGAAATGGTGATAATGTTCAACTAAAAGCTTTTAGTGGCATTGCTCGAGCTTCAACTCAAGTCAACAATCAAGGTATGGTATCGGAAATCTTTAGAGATAATAAGAATGTCGGGCCCAAGCTTAGTTCAAATACTCAACTAAAGGCATCTACTATGCAATTTAGTCGAGAGCAGATGAAGAAGATTTTTAAATATCATGATAGCGATAAGGATGGTTTTCTCAACCTAAGGGAGCTAACAAAAGCTTTTGCTTTTCTAGGCTCAATTATTCCATTTGAGAAAGCTTCCTATGGCATGTCATATGCTGATGCAGATAAAGATGGCCTTATTAAAATGTTTATCCCCAAACTGCAAGCTTCCATGGCTAAGTATGAAGCAAGCGAGATGATCAAGAAGAATACTAGAAATGGTGATAATGTTCAACTAAAAGCTTTTAATGGCATTGCTCGAGCTTCAACCCAAGTCAACAATCAAGGCATGGTACCAGAAATTCTTAGAGATAACAAAAATGTCGGGCCCAAGTTTAGTTCAAATACTCATCTAAAAGCATCAAATATGCAATTTAGTCGAGAGAAGATGAAGGAGATCTTTAGATATCATGATAGTGATAAAGATGGTTTTCTCAATATAAGAGAGCTAACAAAAGCTTTTGCTTTTCTAGGCTCAATTATTCCATTTGAGAAAGCTTCCTATGGCATGACATATGCTGATGCAAATAAAGATGGCCTTATTAGCGAGGCTGAACTTGACAAACTCGTTGATTATGCCCAAAAGTTTATGAAGAAGAAA

Protein sequence

MFIPKLQASTAKYEASEMIKKCTRNGDNVQLKAFSGIARASTQVNNQGMVSEIFRDNKNVGPKLSSNTQLKASTMQFSREQMKKIFKYHDSDKDGFLNLRELTKAFAFLGSIIPFEKASYGMSYADADKDGLIKMFIPKLQASMAKYEASEMIKKNTRNGDNVQLKAFNGIARASTQVNNQGMVPEILRDNKNVGPKFSSNTHLKASNMQFSREKMKEIFRYHDSDKDGFLNIRELTKAFAFLGSIIPFEKASYGMTYADANKDGLISEAELDKLVDYAQKFMKKK

Homology

[Close]

BLAST of Cp4.1LG01g17010 vs. TrEMBL
Match: A0A0A0KLF3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G067670 PE=4 SV=1)

HSP 1 Score: 191.8 bits (486), Expect = 1.1e-45
Identity = 108/195 (55.38%), Postives = 130/195 (66.67%), Query Frame = 1


Query: 113 IPFEKASYGMSYADADKDGLIKMFIPKLQASMAKYEASEMIKKNTRNGDNVQLKAFNGIA 172
           +P  K+SY   Y DA       M IP+LQ S AKYEAS+++KK  +NG+ V L AFN  A
Sbjct: 6   VPSSKSSYRNKYMDAITKPNQTMHIPQLQMSKAKYEASKLMKKYEQNGEGVILSAFNDNA 65

Query: 173 RASTQVN-NQGMVPEILRDNKNVGPKFSSNTHL--------------------KASNMQF 232
           R STQ+N N+ M  + L+ N +V  K SSN  L                    KASNMQF
Sbjct: 66  RGSTQINTNREMATKKLKPNDDVAHKLSSNAQLKSNNQIRGKAQVPIKRVYDTKASNMQF 125

Query: 233 SREKMKEIFRYHDSDKDGFLNIRELTKAFAFLGSIIPFEKASYGMTYADANKDGLISEAE 287
           SRE++KEIF+Y+DSD+DGFLNIRE+TKAFA LGSI PF KA +GM YAD NKDGLI E E
Sbjct: 126 SREQIKEIFQYYDSDRDGFLNIREVTKAFALLGSIFPFNKAYHGMVYADTNKDGLIGEDE 185

[Close]

BLAST of Cp4.1LG01g17010 vs. TrEMBL
Match: A0A0A0KMQ1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G067410 PE=4 SV=1)

HSP 1 Score: 174.1 bits (440), Expect = 2.5e-40
Identity = 95/172 (55.23%), Postives = 120/172 (69.77%), Query Frame = 1


Query: 135 MFIPKLQASMAKYEASEMIKKNTRNGDNVQLKAFNGIARASTQVNNQGMVPEILRDNKNV 194
           M+I KLQASMA YEAS +IK+  +NGD V++KAF+ + R+STQ+ N+  V +IL+ +  V
Sbjct: 1   MYISKLQASMAMYEASMLIKQYEKNGDAVKVKAFDDV-RSSTQIGNRESVLKILKPSDGV 60

Query: 195 GPKFSSNTHL--------------------KASNMQFSREKMKEIFRYHDSDKDGFLNIR 254
             K  S  H+                    K+SNM  SRE++KEIF+YHD++ DGFLN  
Sbjct: 61  AHKLRSEAHIQPTQRTGGKGKKSITRVLDRKSSNMSLSRERIKEIFQYHDNNNDGFLNRM 120

Query: 255 ELTKAFAFLGSIIPFEKASYGMTYADANKDGLISEAELDKLVDYAQKFMKKK 287
           ELTKAFAFLGS+ PF KA YGM YADAN+DGLISEAELDKL+DYA K +KKK
Sbjct: 121 ELTKAFAFLGSMFPFYKACYGMVYADANEDGLISEAELDKLIDYASKIIKKK 171

[Close]

BLAST of Cp4.1LG01g17010 vs. TrEMBL
Match: A0A0A0KIY4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G068170 PE=4 SV=1)

HSP 1 Score: 173.3 bits (438), Expect = 4.2e-40
Identity = 97/176 (55.11%), Postives = 120/176 (68.18%), Query Frame = 1


Query: 135 MFIPKLQASMAKYEASEMIKKNTRNGDNVQLKAFNGIARASTQVNN-QGMVPEILRDNKN 194
           M+I  LQ S AKYEAS+++KK+  N + V LKAFNGI  AST++NN Q M  EI+    N
Sbjct: 1   MYISNLQVSKAKYEASKLMKKHENNDEGVPLKAFNGIPPASTKINNKQAMATEIILKPSN 60

Query: 195 --VGPKFSSNTHL---------------------KASNMQFSREKMKEIFRYHDSDKDGF 254
             V    +SN ++                     KASNMQFSRE++KEIF+YHDSD DGF
Sbjct: 61  HPVAHYLTSNAYMIPSKQLGAGKAQVTTTSVLDIKASNMQFSREQIKEIFQYHDSDNDGF 120

Query: 255 LNIRELTKAFAFLGSIIPFEKASYGMTYADANKDGLISEAELDKLVDYAQKFMKKK 287
           LN+RE+TKAFAFLG+I+P  KA +GM YADANKDGLIS+ EL+KLVDYA KF  K+
Sbjct: 121 LNLREVTKAFAFLGTILPLYKAYHGMVYADANKDGLISKDELEKLVDYAYKFFNKR 176

[Close]

BLAST of Cp4.1LG01g17010 vs. TrEMBL
Match: A0A0A0LRC8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G359950 PE=4 SV=1)

HSP 1 Score: 153.7 bits (387), Expect = 3.4e-34
Identity = 91/172 (52.91%), Postives = 117/172 (68.02%), Query Frame = 1


Query: 135 MFIPKLQASMAKYEASEMIKKNTRNGDNV----QLKAFNGIARASTQVNNQGMVPE--IL 194
           M +  LQA  AK EA+E+IKK  RNGD V    +L++F   AR STQ+NN   V    + 
Sbjct: 1   MSVSHLQA-WAKNEANELIKKYDRNGDGVLTKEELQSFLRDARGSTQLNNIRNVSSSTVP 60

Query: 195 RDNKNVGPKFSSNTHL--------------KASNMQFSREKMKEIFRYHDSDKDGFLNIR 254
           + N+N+  K SSNT +              K SN+  SRE++KEIF+YHDS+KDGFL+IR
Sbjct: 61  KTNENLAQKVSSNTCITPKKQLLDKAQGSSKQSNVPLSREQIKEIFKYHDSNKDGFLSIR 120

Query: 255 ELTKAFAFLGSIIPFEKASYGMTYADANKDGLISEAELDKLVDYAQKFMKKK 287
           ELTKAF+ +GSI+PF KA Y M YAD ++DGL+SEAELDKL+DYA K +KKK
Sbjct: 121 ELTKAFSSMGSIVPFCKARYAMAYADVDEDGLVSEAELDKLIDYAHKIIKKK 171

[Close]

BLAST of Cp4.1LG01g17010 vs. TrEMBL
Match: A0A0A0LKX1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G359940 PE=4 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 3.7e-20
Identity = 52/80 (65.00%), Postives = 60/80 (75.00%), Query Frame = 1


Query: 207 SNMQFSREKMKEIFRYHDSDKDGFLNIRELTKAFAFLGSIIPFEKASYGMTYADANKDGL 266
           S   FSRE+MKEIFR HD D DG+L+I EL KA  FLG  IPF KA YGM Y D N DGL
Sbjct: 7   SKFNFSREEMKEIFREHDIDGDGYLSISELIKAMGFLGHSIPFYKAHYGMAYCDENGDGL 66

Query: 267 ISEAELDKLVDYAQKFMKKK 287
           ISE ELDKL+DYA++F K++
Sbjct: 67  ISEDELDKLIDYAERFQKRR 86

[Close]

BLAST of Cp4.1LG01g17010 vs. NCBI nr
Match: gi|700194512|gb|KGN49689.1| (hypothetical protein Csa_5G067670 [Cucumis sativus])

HSP 1 Score: 191.8 bits (486), Expect = 1.6e-45
Identity = 108/195 (55.38%), Postives = 130/195 (66.67%), Query Frame = 1


Query: 113 IPFEKASYGMSYADADKDGLIKMFIPKLQASMAKYEASEMIKKNTRNGDNVQLKAFNGIA 172
           +P  K+SY   Y DA       M IP+LQ S AKYEAS+++KK  +NG+ V L AFN  A
Sbjct: 6   VPSSKSSYRNKYMDAITKPNQTMHIPQLQMSKAKYEASKLMKKYEQNGEGVILSAFNDNA 65

Query: 173 RASTQVN-NQGMVPEILRDNKNVGPKFSSNTHL--------------------KASNMQF 232
           R STQ+N N+ M  + L+ N +V  K SSN  L                    KASNMQF
Sbjct: 66  RGSTQINTNREMATKKLKPNDDVAHKLSSNAQLKSNNQIRGKAQVPIKRVYDTKASNMQF 125

Query: 233 SREKMKEIFRYHDSDKDGFLNIRELTKAFAFLGSIIPFEKASYGMTYADANKDGLISEAE 287
           SRE++KEIF+Y+DSD+DGFLNIRE+TKAFA LGSI PF KA +GM YAD NKDGLI E E
Sbjct: 126 SREQIKEIFQYYDSDRDGFLNIREVTKAFALLGSIFPFNKAYHGMVYADTNKDGLIGEDE 185

[Close]

BLAST of Cp4.1LG01g17010 vs. NCBI nr
Match: gi|700194510|gb|KGN49687.1| (hypothetical protein Csa_5G067410 [Cucumis sativus])

HSP 1 Score: 174.1 bits (440), Expect = 3.5e-40
Identity = 95/172 (55.23%), Postives = 120/172 (69.77%), Query Frame = 1


Query: 135 MFIPKLQASMAKYEASEMIKKNTRNGDNVQLKAFNGIARASTQVNNQGMVPEILRDNKNV 194
           M+I KLQASMA YEAS +IK+  +NGD V++KAF+ + R+STQ+ N+  V +IL+ +  V
Sbjct: 1   MYISKLQASMAMYEASMLIKQYEKNGDAVKVKAFDDV-RSSTQIGNRESVLKILKPSDGV 60

Query: 195 GPKFSSNTHL--------------------KASNMQFSREKMKEIFRYHDSDKDGFLNIR 254
             K  S  H+                    K+SNM  SRE++KEIF+YHD++ DGFLN  
Sbjct: 61  AHKLRSEAHIQPTQRTGGKGKKSITRVLDRKSSNMSLSRERIKEIFQYHDNNNDGFLNRM 120

Query: 255 ELTKAFAFLGSIIPFEKASYGMTYADANKDGLISEAELDKLVDYAQKFMKKK 287
           ELTKAFAFLGS+ PF KA YGM YADAN+DGLISEAELDKL+DYA K +KKK
Sbjct: 121 ELTKAFAFLGSMFPFYKACYGMVYADANEDGLISEAELDKLIDYASKIIKKK 171

[Close]

BLAST of Cp4.1LG01g17010 vs. NCBI nr
Match: gi|700194513|gb|KGN49690.1| (hypothetical protein Csa_5G068170 [Cucumis sativus])

HSP 1 Score: 173.3 bits (438), Expect = 6.0e-40
Identity = 97/176 (55.11%), Postives = 120/176 (68.18%), Query Frame = 1


Query: 135 MFIPKLQASMAKYEASEMIKKNTRNGDNVQLKAFNGIARASTQVNN-QGMVPEILRDNKN 194
           M+I  LQ S AKYEAS+++KK+  N + V LKAFNGI  AST++NN Q M  EI+    N
Sbjct: 1   MYISNLQVSKAKYEASKLMKKHENNDEGVPLKAFNGIPPASTKINNKQAMATEIILKPSN 60

Query: 195 --VGPKFSSNTHL---------------------KASNMQFSREKMKEIFRYHDSDKDGF 254
             V    +SN ++                     KASNMQFSRE++KEIF+YHDSD DGF
Sbjct: 61  HPVAHYLTSNAYMIPSKQLGAGKAQVTTTSVLDIKASNMQFSREQIKEIFQYHDSDNDGF 120

Query: 255 LNIRELTKAFAFLGSIIPFEKASYGMTYADANKDGLISEAELDKLVDYAQKFMKKK 287
           LN+RE+TKAFAFLG+I+P  KA +GM YADANKDGLIS+ EL+KLVDYA KF  K+
Sbjct: 121 LNLREVTKAFAFLGTILPLYKAYHGMVYADANKDGLISKDELEKLVDYAYKFFNKR 176

[Close]

BLAST of Cp4.1LG01g17010 vs. NCBI nr
Match: gi|449470190|ref|XP_004152801.1| (PREDICTED: probable calcium-binding protein CML11 [Cucumis sativus])

HSP 1 Score: 153.7 bits (387), Expect = 4.9e-34
Identity = 91/172 (52.91%), Postives = 117/172 (68.02%), Query Frame = 1


Query: 135 MFIPKLQASMAKYEASEMIKKNTRNGDNV----QLKAFNGIARASTQVNNQGMVPE--IL 194
           M +  LQA  AK EA+E+IKK  RNGD V    +L++F   AR STQ+NN   V    + 
Sbjct: 1   MSVSHLQA-WAKNEANELIKKYDRNGDGVLTKEELQSFLRDARGSTQLNNIRNVSSSTVP 60

Query: 195 RDNKNVGPKFSSNTHL--------------KASNMQFSREKMKEIFRYHDSDKDGFLNIR 254
           + N+N+  K SSNT +              K SN+  SRE++KEIF+YHDS+KDGFL+IR
Sbjct: 61  KTNENLAQKVSSNTCITPKKQLLDKAQGSSKQSNVPLSREQIKEIFKYHDSNKDGFLSIR 120

Query: 255 ELTKAFAFLGSIIPFEKASYGMTYADANKDGLISEAELDKLVDYAQKFMKKK 287
           ELTKAF+ +GSI+PF KA Y M YAD ++DGL+SEAELDKL+DYA K +KKK
Sbjct: 121 ELTKAFSSMGSIVPFCKARYAMAYADVDEDGLVSEAELDKLIDYAHKIIKKK 171

[Close]

BLAST of Cp4.1LG01g17010 vs. NCBI nr
Match: gi|659089539|ref|XP_008445564.1| (PREDICTED: probable calcium-binding protein CML11 [Cucumis melo])

HSP 1 Score: 142.1 bits (357), Expect = 1.5e-30
Identity = 87/171 (50.88%), Postives = 112/171 (65.50%), Query Frame = 1


Query: 135 MFIPKLQASMAKYEASEMIKKNTRNGDNV----QLKAFNGIARAST-QVNNQGMVPEILR 194
           M +  LQA  AK EASE+IKK  RNGD V    +L++F   AR    +  +   +P   +
Sbjct: 1   MSVSHLQA-WAKIEASELIKKYDRNGDGVLTKEELQSFLHDARLKNIRFVSSSTIP---K 60

Query: 195 DNKNVGPKFSSNTHLKA--------------SNMQFSREKMKEIFRYHDSDKDGFLNIRE 254
            N+N+  K SSNT +K               SN+  SRE++KEIF+YHDS+KDGFL+IRE
Sbjct: 61  TNENLDQKVSSNTRIKPKKQLLDKAQDSLRQSNVPLSREQIKEIFKYHDSNKDGFLSIRE 120

Query: 255 LTKAFAFLGSIIPFEKASYGMTYADANKDGLISEAELDKLVDYAQKFMKKK 287
           LTKAF  LGSI+PF KA + M YAD ++DGLISEAEL KL+DYA+K +KKK
Sbjct: 121 LTKAFGSLGSIVPFAKARHAMAYADVDEDGLISEAELHKLIDYAEKIIKKK 167

The following BLAST results are available for this feature:

BLAST of Cp4.1LG01g17010 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG01g17010 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KLF3_CUCSA	1.1e-45	55.38	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G067670 PE=4 SV=1	[more]
A0A0A0KMQ1_CUCSA	2.5e-40	55.23	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G067410 PE=4 SV=1	[more]
A0A0A0KIY4_CUCSA	4.2e-40	55.11	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G068170 PE=4 SV=1	[more]
A0A0A0LRC8_CUCSA	3.4e-34	52.91	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G359950 PE=4 SV=1	[more]
A0A0A0LKX1_CUCSA	3.7e-20	65.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G359940 PE=4 SV=1	[more]

BLAST of Cp4.1LG01g17010 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG01g17010 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700194512\|gb\|KGN49689.1\|	1.6e-45	55.38	hypothetical protein Csa_5G067670 [Cucumis sativus]	[more]
gi\|700194510\|gb\|KGN49687.1\|	3.5e-40	55.23	hypothetical protein Csa_5G067410 [Cucumis sativus]	[more]
gi\|700194513\|gb\|KGN49690.1\|	6.0e-40	55.11	hypothetical protein Csa_5G068170 [Cucumis sativus]	[more]
gi\|449470190\|ref\|XP_004152801.1\|	4.9e-34	52.91	PREDICTED: probable calcium-binding protein CML11 [Cucumis sativus]	[more]
gi\|659089539\|ref\|XP_008445564.1\|	1.5e-30	50.88	PREDICTED: probable calcium-binding protein CML11 [Cucumis melo]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0005509	calcium ion binding

Vocabulary: **INTERPRO**
Term	Definition
IPR018247	EF_Hand_1_Ca_BS
IPR011992	EF-hand-dom_pair
IPR002048	EF_hand_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0005509	calcium ion binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG01g17010.1	Cp4.1LG01g17010.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002048	EF-hand domain	PFAM	PF13202	EF-hand_5	coord: 259..276 score:
IPR002048	EF-hand domain	PFAM	PF13405	EF-hand_6	coord: 215..243 score: 8.3E-6coord: 82..109 score: 1.
IPR002048	EF-hand domain	SMART	SM00054	efh_1	coord: 81..109 score: 2.1coord: 215..243 score:
IPR002048	EF-hand domain	PROFILE	PS50222	EF_HAND_2	coord: 211..246 score: 12.617coord: 260..282 score: 6.703coord: 77..112 score: 12
IPR011992	EF-hand domain pair	GENE3D	G3DSA:1.10.238.10		coord: 73..134 score: 1.6E-9coord: 205..277 score: 1.1
IPR011992	EF-hand domain pair	unknown	SSF47473	EF-hand	coord: 77..147 score: 2.59E-21coord: 203..276 score: 2.59
IPR018247	EF-Hand 1, calcium-binding site	PROSITE	PS00018	EF_HAND_1	coord: 224..236 score: -coord: 260..272 score: -coord: 90..102 scor
None	No IPR available	PANTHER	PTHR10891	EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN	coord: 207..271 score: 1.2E-14coord: 69..137 score: 1.2
None	No IPR available	PANTHER	PTHR10891:SF592	CALCIUM-BINDING PROTEIN CML38-RELATED	coord: 207..271 score: 1.2E-14coord: 69..137 score: 1.2

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cp4.1LG01g17010	Wax gourd	cpewgoB0559
Cp4.1LG01g17010	Cucurbita maxima (Rimu)	cmacpeB720
Cp4.1LG01g17010	Cucurbita maxima (Rimu)	cmacpeB732
Cp4.1LG01g17010	Cucurbita moschata (Rifu)	cmocpeB673
Cp4.1LG01g17010	Cucurbita moschata (Rifu)	cmocpeB680
Cp4.1LG01g17010	Cucurbita moschata (Rifu)	cmocpeB682
Cp4.1LG01g17010	Cucurbita moschata (Rifu)	cmocpeB686
Cp4.1LG01g17010	Wild cucumber (PI 183967)	cpecpiB449
Cp4.1LG01g17010	Cucumber (Chinese Long) v2	cpecuB449
Cp4.1LG01g17010	Bottle gourd (USVL1VR-Ls)	cpelsiB319
Cp4.1LG01g17010	Watermelon (Charleston Gray)	cpewcgB365
Cp4.1LG01g17010	Watermelon (Charleston Gray)	cpewcgB369
Cp4.1LG01g17010	Watermelon (97103) v1	cpewmB455
Cp4.1LG01g17010	Melon (DHL92) v3.5.1	cpemeB374
Cp4.1LG01g17010	Cucumber (Gy14) v2	cgybcpeB663
Cp4.1LG01g17010	Melon (DHL92) v3.6.1	cpemedB433
Cp4.1LG01g17010	Cucumber (Chinese Long) v3	cpecucB0557