Cp4.1LG01g15550 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG01g15550
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionHomeobox transcription factor KN4
LocationCp4.1LG01 : 9233599 .. 9234767 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTGGTGGGGGGCATTGCAGTACTGCTCATGGGATATCGTCGAGGGAGGGAGGAGGTTCTTATTAACCTCGAAGCTCTCGTGGGTCATTGCAGAAAGTGGATTTATGTCGCCGTTCAGTCTTGTCTATTCTGACAGTGAGTTCTTCACCCCCCCCCNGAACGACTTAACCAGACACTGCTGAAACGCAGCTTGGCTTCCCTTTTCCTTCTTCCTCTTTTGCAGTTAGCAGTCAAATCCTTGTTTTACCTTTGAAATGCCTTTTTTGTGGGGTCCTATCTTCCTGCCGTGCCCTTTCAATATCAATCTGCACTTCTTCTTTAAGACATTGAATCGTACATTTTTTCATTTCATTTACCATGGAGCTTTATTTCTTGCTTATACATGATCTGAATTACTACTGCCAAGTAAGAATATGTTTTCGATCTCGTAAACAGATGAAGGAGCTGTCTCGTCGGATGAAGAATTGAGCGGAGGAGAGATGGAAGTTGTGGAGCCGGAAACTCAAACCAAAGGCGAGAACAGGGATCTCAAGGACAAGCTTTTACGTCGATTTGGCAGTCATATTAGTAGCTTAAAATTGGAGTTCTCAAAGAAGAAGAAAAAAGGAAAATTACCAAAAGAAGCCAGGCAGACACTCCTTGAATGGTGGAACGTTCACTATAGATGGCCATATCCTACGGTATGTTTGCTTATAAGCTTACGTAAATTTTGTAATGGACATCGTATGGTCACACATAAAAGTTCACAGCATAGAAAATACGGACTGGACAATGGTTGATGCATTAATTCACTTCATCATGCCTTAGTCACGTGCTACGAATCAGGCAAAAGACGGTCTAAAGTTTTTAATTATTTCACTAAGTTGCCATCTATCCCAAATATAGTTCATTACGGAATTCATGATATTAAAAGTTGCTTAACTAAATAAAGAAATCCCTCATCGAGGAATATTTTATGATTGTTCTTGAATTAGAGGGCCAAAATCCGCTGCTTTTAATCATGCAGGAAGCCGATAAGGTTGCACTGGCAGAGAGAACAGGGCTTGACCAGAAGCAAATTAACAATTGGTTCATAAATCAGCGGAAACGCCACTGGAAGCCATCAGACAATATGCAGTTTGAGGGAATGGATGGGCTTTCTTCTAGTAGATTATTCAGAGAGGACTGA

mRNA sequence

ATGTGGTGGGGGGCATTGCAGTACTGCTCATGGGATATCGTCGAGGGAGGGAGGAGGTTCTTATTAACCTCGAAGCTCTCGTGGGTCATTGCAGAAAGTGGATTTATGTCGCCGTTCAGTCTTGTCTATTCTGACAATGAAGGAGCTGTCTCGTCGGATGAAGAATTGAGCGGAGGAGAGATGGAAGTTGTGGAGCCGGAAACTCAAACCAAAGGCGAGAACAGGGATCTCAAGGACAAGCTTTTACGTCGATTTGGCAGTCATATTAGTAGCTTAAAATTGGAGTTCTCAAAGAAGAAGAAAAAAGGAAAATTACCAAAAGAAGCCAGGCAGACACTCCTTGAATGGTGGAACGTTCACTATAGATGGCCATATCCTACGGTATGTTTGCTTATAAGCTTACAGGGCCAAAATCCGCTGCTTTTAATCATGCAGGAAGCCGATAAGGTTGCACTGGCAGAGAGAACAGGGCTTGACCAGAAGCAAATTAACAATTGGTTCATAAATCAGCGGAAACGCCACTGGAAGCCATCAGACAATATGCAGTTTGAGGGAATGGATGGGCTTTCTTCTAGTAGATTATTCAGAGAGGACTGA

Coding sequence (CDS)

ATGTGGTGGGGGGCATTGCAGTACTGCTCATGGGATATCGTCGAGGGAGGGAGGAGGTTCTTATTAACCTCGAAGCTCTCGTGGGTCATTGCAGAAAGTGGATTTATGTCGCCGTTCAGTCTTGTCTATTCTGACAATGAAGGAGCTGTCTCGTCGGATGAAGAATTGAGCGGAGGAGAGATGGAAGTTGTGGAGCCGGAAACTCAAACCAAAGGCGAGAACAGGGATCTCAAGGACAAGCTTTTACGTCGATTTGGCAGTCATATTAGTAGCTTAAAATTGGAGTTCTCAAAGAAGAAGAAAAAAGGAAAATTACCAAAAGAAGCCAGGCAGACACTCCTTGAATGGTGGAACGTTCACTATAGATGGCCATATCCTACGGTATGTTTGCTTATAAGCTTACAGGGCCAAAATCCGCTGCTTTTAATCATGCAGGAAGCCGATAAGGTTGCACTGGCAGAGAGAACAGGGCTTGACCAGAAGCAAATTAACAATTGGTTCATAAATCAGCGGAAACGCCACTGGAAGCCATCAGACAATATGCAGTTTGAGGGAATGGATGGGCTTTCTTCTAGTAGATTATTCAGAGAGGACTGA

Protein sequence

MWWGALQYCSWDIVEGGRRFLLTSKLSWVIAESGFMSPFSLVYSDNEGAVSSDEELSGGEMEVVEPETQTKGENRDLKDKLLRRFGSHISSLKLEFSKKKKKGKLPKEARQTLLEWWNVHYRWPYPTVCLLISLQGQNPLLLIMQEADKVALAERTGLDQKQINNWFINQRKRHWKPSDNMQFEGMDGLSSSRLFRED
Homology
[Close]
BLAST of Cp4.1LG01g15550 vs. Swiss-Prot
Match: KNAT6_ARATH (Homeobox protein knotted-1-like 6 OS=Arabidopsis thaliana GN=KNAT6 PE=1 SV=1)

HSP 1 Score: 186.8 bits (473), Expect = 2.3e-46
Identity = 97/152 (63.82%), Postives = 113/152 (74.34%), Query Frame = 1 

Query: 47  EGAVSSDEELSGGEMEVVEPETQTKGENRDLKDKLLRRFGSHISSLKLEFSKKKKKGKLP 106
           +G +SSDEELSGG+ EV E   Q + E+RDLKD+LLR+FGS IS+LKLEFSKKKKKGKLP
Sbjct: 196 DGVISSDEELSGGDHEVAEDGRQ-RCEDRDLKDRLLRKFGSRISTLKLEFSKKKKKGKLP 255

Query: 107 KEARQTLLEWWNVHYRWPYPTVCLLISLQGQNPLLLIMQEADKVALAERTGLDQKQINNW 166
           +EARQ LL+WWN+HY+WPYPT                  E DK+ALA+ TGLDQKQINNW
Sbjct: 256 REARQALLDWWNLHYKWPYPT------------------EGDKIALADATGLDQKQINNW 315

Query: 167 FINQRKRHWKPSDNMQFEGMDGLSSSRLFRED 199
           FINQRKRHWKPS+NM F  MD  SS   F E+
Sbjct: 316 FINQRKRHWKPSENMPFAMMDD-SSGSFFTEE 327

[Close]
BLAST of Cp4.1LG01g15550 vs. Swiss-Prot
Match: KNAT2_ARATH (Homeobox protein knotted-1-like 2 OS=Arabidopsis thaliana GN=KNAT2 PE=1 SV=3)

HSP 1 Score: 182.2 bits (461), Expect = 5.6e-45
Identity = 95/160 (59.38%), Postives = 114/160 (71.25%), Query Frame = 1 

Query: 38  PFSLVYSDNEGAVSSDEELSGGEMEVVEPETQTKGENRDLKDKLLRRFGSHISSLKLEFS 97
           P S     ++GAVSSDEEL   + ++   ++Q +  +RDLKD+LLR+FGSHISSLKLEFS
Sbjct: 171 PASATALSDDGAVSSDEELREDD-DIAADDSQQRSNDRDLKDQLLRKFGSHISSLKLEFS 230

Query: 98  KKKKKGKLPKEARQTLLEWWNVHYRWPYPTVCLLISLQGQNPLLLIMQEADKVALAERTG 157
           KKKKKGKLP+EARQ LL+WWNVH +WPYPT                  E DK++LAE TG
Sbjct: 231 KKKKKGKLPREARQALLDWWNVHNKWPYPT------------------EGDKISLAEETG 290

Query: 158 LDQKQINNWFINQRKRHWKPSDNMQFEGMDGLSSSRLFRE 198
           LDQKQINNWFINQRKRHWKPS+NM F+ MD  S+   F E
Sbjct: 291 LDQKQINNWFINQRKRHWKPSENMPFDMMDD-SNETFFTE 310

[Close]
BLAST of Cp4.1LG01g15550 vs. Swiss-Prot
Match: KNAP1_MALDO (Homeobox protein knotted-1-like 1 OS=Malus domestica PE=2 SV=1)

HSP 1 Score: 165.6 bits (418), Expect = 5.4e-40
Identity = 84/142 (59.15%), Postives = 102/142 (71.83%), Query Frame = 1 

Query: 48  GAVSSDEELSGGEMEVVEPETQTKGENRDLKDKLLRRFGSHISSLKLEFSKKKKKGKLPK 107
           G+   ++E SGGE EV  PE   + E+R+LK+ LLR++  ++SSLK E SKKKKKGKLPK
Sbjct: 254 GSSEDEQENSGGETEV--PEIDPRAEDRELKNHLLRKYSGYLSSLKQELSKKKKKGKLPK 313

Query: 108 EARQTLLEWWNVHYRWPYPTVCLLISLQGQNPLLLIMQEADKVALAERTGLDQKQINNWF 167
           EARQ LL WW +HY+WPYP+                  E++KVALAE TGLDQKQINNWF
Sbjct: 314 EARQKLLSWWELHYKWPYPS------------------ESEKVALAESTGLDQKQINNWF 373

Query: 168 INQRKRHWKPSDNMQFEGMDGL 190
           INQRKRHWKPS++MQF  MDGL
Sbjct: 374 INQRKRHWKPSEDMQFMVMDGL 375

[Close]
BLAST of Cp4.1LG01g15550 vs. Swiss-Prot
Match: KNAP2_MALDO (Homeobox protein knotted-1-like 2 OS=Malus domestica PE=2 SV=1)

HSP 1 Score: 164.9 bits (416), Expect = 9.3e-40
Identity = 87/145 (60.00%), Postives = 104/145 (71.72%), Query Frame = 1 

Query: 47  EGAVSSDEEL--SGGEMEVVEPETQTKGENRDLKDKLLRRFGSHISSLKLEFSKKKKKGK 106
           EG  SS+EE   SGGE EV  PE   + E+R+LK+ LLR++  ++SSLK E SKKKKKGK
Sbjct: 250 EGIGSSEEEQENSGGETEV--PEIDPRAEDRELKNHLLRKYSGYLSSLKQELSKKKKKGK 309

Query: 107 LPKEARQTLLEWWNVHYRWPYPTVCLLISLQGQNPLLLIMQEADKVALAERTGLDQKQIN 166
           LPK+ARQ LL WW +HY+WPYP+                  E++KVALAE TGLDQKQIN
Sbjct: 310 LPKDARQKLLSWWELHYKWPYPS------------------ESEKVALAESTGLDQKQIN 369

Query: 167 NWFINQRKRHWKPSDNMQFEGMDGL 190
           NWFINQRKRHWKPS++MQF  MDGL
Sbjct: 370 NWFINQRKRHWKPSEDMQFMVMDGL 374

[Close]
BLAST of Cp4.1LG01g15550 vs. Swiss-Prot
Match: KNAT1_ARATH (Homeobox protein knotted-1-like 1 OS=Arabidopsis thaliana GN=KNAT1 PE=1 SV=1)

HSP 1 Score: 164.1 bits (414), Expect = 1.6e-39
Identity = 89/149 (59.73%), Postives = 106/149 (71.14%), Query Frame = 1 

Query: 44  SDNEGAVSSDEEL---SGGEMEVVEPETQTKGENRDLKDKLLRRFGSHISSLKLEFSKKK 103
           SDN G  SSDEE    SGGE E+  PE   + E+R+LK+ LL+++  ++SSLK E SKKK
Sbjct: 248 SDNMG--SSDEEQENNSGGETEL--PEIDPRAEDRELKNHLLKKYSGYLSSLKQELSKKK 307

Query: 104 KKGKLPKEARQTLLEWWNVHYRWPYPTVCLLISLQGQNPLLLIMQEADKVALAERTGLDQ 163
           KKGKLPKEARQ LL WW +HY+WPYP+                  E++KVALAE TGLDQ
Sbjct: 308 KKGKLPKEARQKLLTWWELHYKWPYPS------------------ESEKVALAESTGLDQ 367

Query: 164 KQINNWFINQRKRHWKPSDNMQFEGMDGL 190
           KQINNWFINQRKRHWKPS++MQF  MDGL
Sbjct: 368 KQINNWFINQRKRHWKPSEDMQFMVMDGL 374

[Close]
BLAST of Cp4.1LG01g15550 vs. TrEMBL
Match: A0A0A0KVK5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G600390 PE=4 SV=1)

HSP 1 Score: 249.2 bits (635), Expect = 4.2e-63
Identity = 129/160 (80.62%), Postives = 133/160 (83.12%), Query Frame = 1 

Query: 39  FSLVYSDNEGAVSSDEELSGGEMEVVEPETQTKGENRDLKDKLLRRFGSHISSLKLEFSK 98
           FS   SD +GAVSSDEELSGGEMEVVE E QTKGENRDLKDKLLRRFGSHIS+LKLEFSK
Sbjct: 184 FSRSLSD-DGAVSSDEELSGGEMEVVEAEAQTKGENRDLKDKLLRRFGSHISTLKLEFSK 243

Query: 99  KKKKGKLPKEARQTLLEWWNVHYRWPYPTVCLLISLQGQNPLLLIMQEADKVALAERTGL 158
           KKKKGKLPKEARQTL EWWNVHY+WPYPT                  EADKVALAERTGL
Sbjct: 244 KKKKGKLPKEARQTLFEWWNVHYKWPYPT------------------EADKVALAERTGL 303

Query: 159 DQKQINNWFINQRKRHWKPSDNMQFEGMDGLSSSRLFRED 199
           DQKQINNWFINQRKRHWKPS+NMQFEGMDGLSS R FRED
Sbjct: 304 DQKQINNWFINQRKRHWKPSENMQFEGMDGLSSGRFFRED 324

[Close]
BLAST of Cp4.1LG01g15550 vs. TrEMBL
Match: Q20CF2_BETVU (Fgenesh protein 1 OS=Beta vulgaris PE=4 SV=1)

HSP 1 Score: 203.8 bits (517), Expect = 2.0e-49
Identity = 103/154 (66.88%), Postives = 124/154 (80.52%), Query Frame = 1 

Query: 46  NEGAVSSDEELSGGEMEVVEPETQTKGENRDLKDKLLRRFGSHISSLKLEFSKKKKKGKL 105
           +EG VSSDE+ SGGE++V   + Q K E RDLKD+LLRRFGSHISSLKLEFSKKKKKGKL
Sbjct: 9   DEGVVSSDEDYSGGEIDV--QDLQPKDEERDLKDQLLRRFGSHISSLKLEFSKKKKKGKL 68

Query: 106 PKEARQTLLEWWNVHYRWPYPTVC-LLISLQGQNPLLLIMQEADKVALAERTGLDQKQIN 165
           P+EARQ L EWWN HY+WPYPT+    +S+  Q+P + + QEADK+ALAE TGLDQ+QIN
Sbjct: 69  PREARQMLFEWWNAHYKWPYPTLAWTYVSIISQHPAIAV-QEADKIALAEMTGLDQRQIN 128

Query: 166 NWFINQRKRHWKPSDNMQFEGMDGLSSSRLFRED 199
           NWFINQRKRHWKPS+NMQ+  M+   S + F +D
Sbjct: 129 NWFINQRKRHWKPSENMQYALMENF-SGQYFTDD 158

[Close]
BLAST of Cp4.1LG01g15550 vs. TrEMBL
Match: A0A061EE17_THECC (KNOTTED1-like homeobox gene 6 OS=Theobroma cacao GN=TCM_010433 PE=4 SV=1)

HSP 1 Score: 203.0 bits (515), Expect = 3.4e-49
Identity = 105/159 (66.04%), Postives = 122/159 (76.73%), Query Frame = 1 

Query: 40  SLVYSDNEGAVSSDEELSGGEMEVVEPETQTKGENRDLKDKLLRRFGSHISSLKLEFSKK 99
           S+  + +EGA SSDE+LSGGE++    E Q + E+RDLKD+LLRRFGSHIS+LKLEFSKK
Sbjct: 177 SIQGASDEGAASSDEDLSGGEVDA--QEAQPRSEDRDLKDRLLRRFGSHISTLKLEFSKK 236

Query: 100 KKKGKLPKEARQTLLEWWNVHYRWPYPTVCLLISLQGQNPLLLIMQEADKVALAERTGLD 159
           KKKGKLP+EARQTLL+WWNVHY+WPYPT                  EADK+ALAE TGLD
Sbjct: 237 KKKGKLPREARQTLLDWWNVHYKWPYPT------------------EADKIALAESTGLD 296

Query: 160 QKQINNWFINQRKRHWKPSDNMQFEGMDGLSSSRLFRED 199
           QKQINNWFINQRKRHWKPS++MQF  MD L S + F ED
Sbjct: 297 QKQINNWFINQRKRHWKPSESMQFAVMDSL-SGQFFTED 314

[Close]
BLAST of Cp4.1LG01g15550 vs. TrEMBL
Match: A0A0B0NTB3_GOSAR (Homeobox protein knotted-1-like 6 OS=Gossypium arboreum GN=F383_01019 PE=4 SV=1)

HSP 1 Score: 202.6 bits (514), Expect = 4.5e-49
Identity = 107/154 (69.48%), Postives = 119/154 (77.27%), Query Frame = 1 

Query: 45  DNEGAVSSDEELSGGEMEVVEPETQTKGENRDLKDKLLRRFGSHISSLKLEFSKKKKKGK 104
           D+EG VSSDE++SGGE+E    E Q K E+R LKD+LLRRFGSHISSLKLEFSKKKKKGK
Sbjct: 3   DDEGGVSSDEDISGGEVE--GQEGQGKSEDRGLKDRLLRRFGSHISSLKLEFSKKKKKGK 62

Query: 105 LPKEARQTLLEWWNVHYRWPYPTVCLLISLQGQNPLLLIMQEADKVALAERTGLDQKQIN 164
           LP+EARQTLLEWWNVHY+WPYPT                  EADK+ALAE TGLDQKQIN
Sbjct: 63  LPREARQTLLEWWNVHYKWPYPT------------------EADKLALAESTGLDQKQIN 122

Query: 165 NWFINQRKRHWKPSDNMQFEGMDGLSSSRLFRED 199
           NWFINQRKRHWKPS++MQF  MD L S + F ED
Sbjct: 123 NWFINQRKRHWKPSESMQFAVMDNL-SGQFFSED 135

[Close]
BLAST of Cp4.1LG01g15550 vs. TrEMBL
Match: V5K953_9ROSI (KNOX transcription factor 2 OS=Betula luminifera GN=KNOX2 PE=2 SV=1)

HSP 1 Score: 202.2 bits (513), Expect = 5.8e-49
Identity = 104/153 (67.97%), Postives = 117/153 (76.47%), Query Frame = 1 

Query: 46  NEGAVSSDEELSGGEMEVVEPETQTKGENRDLKDKLLRRFGSHISSLKLEFSKKKKKGKL 105
           +EGAVSSDE+ SGGEMEV   E Q K E+RDLKD+L+RRFG+HI SLKLEFSKKKKKGKL
Sbjct: 188 DEGAVSSDEDFSGGEMEV--QEGQLKSEDRDLKDRLIRRFGNHIGSLKLEFSKKKKKGKL 247

Query: 106 PKEARQTLLEWWNVHYRWPYPTVCLLISLQGQNPLLLIMQEADKVALAERTGLDQKQINN 165
           P+EARQTLL+WWN HY+WPYPT                  E DK+ALAE TGLDQKQINN
Sbjct: 248 PREARQTLLDWWNAHYKWPYPT------------------EGDKIALAESTGLDQKQINN 307

Query: 166 WFINQRKRHWKPSDNMQFEGMDGLSSSRLFRED 199
           WFINQRKRHWKPS+NMQF  MD L S + F +D
Sbjct: 308 WFINQRKRHWKPSENMQFAVMDNL-SGQYFADD 319

[Close]
BLAST of Cp4.1LG01g15550 vs. TAIR10
Match: AT1G23380.2 (AT1G23380.2 KNOTTED1-like homeobox gene 6)

HSP 1 Score: 186.8 bits (473), Expect = 1.3e-47
Identity = 97/152 (63.82%), Postives = 113/152 (74.34%), Query Frame = 1 

Query: 47  EGAVSSDEELSGGEMEVVEPETQTKGENRDLKDKLLRRFGSHISSLKLEFSKKKKKGKLP 106
           +G +SSDEELSGG+ EV E   Q + E+RDLKD+LLR+FGS IS+LKLEFSKKKKKGKLP
Sbjct: 198 DGVISSDEELSGGDHEVAEDGRQ-RCEDRDLKDRLLRKFGSRISTLKLEFSKKKKKGKLP 257

Query: 107 KEARQTLLEWWNVHYRWPYPTVCLLISLQGQNPLLLIMQEADKVALAERTGLDQKQINNW 166
           +EARQ LL+WWN+HY+WPYPT                  E DK+ALA+ TGLDQKQINNW
Sbjct: 258 REARQALLDWWNLHYKWPYPT------------------EGDKIALADATGLDQKQINNW 317

Query: 167 FINQRKRHWKPSDNMQFEGMDGLSSSRLFRED 199
           FINQRKRHWKPS+NM F  MD  SS   F E+
Sbjct: 318 FINQRKRHWKPSENMPFAMMDD-SSGSFFTEE 329

[Close]
BLAST of Cp4.1LG01g15550 vs. TAIR10
Match: AT1G70510.1 (AT1G70510.1 KNOTTED-like from Arabidopsis thaliana 2)

HSP 1 Score: 182.2 bits (461), Expect = 3.2e-46
Identity = 95/160 (59.38%), Postives = 114/160 (71.25%), Query Frame = 1 

Query: 38  PFSLVYSDNEGAVSSDEELSGGEMEVVEPETQTKGENRDLKDKLLRRFGSHISSLKLEFS 97
           P S     ++GAVSSDEEL   + ++   ++Q +  +RDLKD+LLR+FGSHISSLKLEFS
Sbjct: 171 PASATALSDDGAVSSDEELREDD-DIAADDSQQRSNDRDLKDQLLRKFGSHISSLKLEFS 230

Query: 98  KKKKKGKLPKEARQTLLEWWNVHYRWPYPTVCLLISLQGQNPLLLIMQEADKVALAERTG 157
           KKKKKGKLP+EARQ LL+WWNVH +WPYPT                  E DK++LAE TG
Sbjct: 231 KKKKKGKLPREARQALLDWWNVHNKWPYPT------------------EGDKISLAEETG 290

Query: 158 LDQKQINNWFINQRKRHWKPSDNMQFEGMDGLSSSRLFRE 198
           LDQKQINNWFINQRKRHWKPS+NM F+ MD  S+   F E
Sbjct: 291 LDQKQINNWFINQRKRHWKPSENMPFDMMDD-SNETFFTE 310

[Close]
BLAST of Cp4.1LG01g15550 vs. TAIR10
Match: AT4G08150.1 (AT4G08150.1 KNOTTED-like from Arabidopsis thaliana)

HSP 1 Score: 164.1 bits (414), Expect = 8.9e-41
Identity = 89/149 (59.73%), Postives = 106/149 (71.14%), Query Frame = 1 

Query: 44  SDNEGAVSSDEEL---SGGEMEVVEPETQTKGENRDLKDKLLRRFGSHISSLKLEFSKKK 103
           SDN G  SSDEE    SGGE E+  PE   + E+R+LK+ LL+++  ++SSLK E SKKK
Sbjct: 248 SDNMG--SSDEEQENNSGGETEL--PEIDPRAEDRELKNHLLKKYSGYLSSLKQELSKKK 307

Query: 104 KKGKLPKEARQTLLEWWNVHYRWPYPTVCLLISLQGQNPLLLIMQEADKVALAERTGLDQ 163
           KKGKLPKEARQ LL WW +HY+WPYP+                  E++KVALAE TGLDQ
Sbjct: 308 KKGKLPKEARQKLLTWWELHYKWPYPS------------------ESEKVALAESTGLDQ 367

Query: 164 KQINNWFINQRKRHWKPSDNMQFEGMDGL 190
           KQINNWFINQRKRHWKPS++MQF  MDGL
Sbjct: 368 KQINNWFINQRKRHWKPSEDMQFMVMDGL 374

[Close]
BLAST of Cp4.1LG01g15550 vs. TAIR10
Match: AT1G62360.1 (AT1G62360.1 KNOX/ELK homeobox transcription factor)

HSP 1 Score: 146.4 bits (368), Expect = 1.9e-35
Identity = 78/154 (50.65%), Postives = 99/154 (64.29%), Query Frame = 1 

Query: 45  DNEGAVSSDEELSGGEMEVVEPETQTKGENRDLKDKLLRRFGSHISSLKLEFSKKKKKGK 104
           D     SS+EE+     E V+P+     E+R+LK +LLR++  ++ SLK EF KK+KKGK
Sbjct: 236 DRNNNGSSEEEVDMNN-EFVDPQA----EDRELKGQLLRKYSGYLGSLKQEFMKKRKKGK 295

Query: 105 LPKEARQTLLEWWNVHYRWPYPTVCLLISLQGQNPLLLIMQEADKVALAERTGLDQKQIN 164
           LPKEARQ LL+WW+ HY+WPYP+                  E  K+ALAE TGLDQKQIN
Sbjct: 296 LPKEARQQLLDWWSRHYKWPYPS------------------EQQKLALAESTGLDQKQIN 355

Query: 165 NWFINQRKRHWKPSDNMQFEGMDGLSSSRLFRED 199
           NWFINQRKRHWKPS++MQF  MD       F ++
Sbjct: 356 NWFINQRKRHWKPSEDMQFVVMDATHPHHYFMDN 366

[Close]
BLAST of Cp4.1LG01g15550 vs. TAIR10
Match: AT4G32040.1 (AT4G32040.1 KNOTTED1-like homeobox gene 5)

HSP 1 Score: 86.3 bits (212), Expect = 2.4e-17
Identity = 42/106 (39.62%), Postives = 57/106 (53.77%), Query Frame = 1 

Query: 75  RDLKDKLLRRFGSHISSLKLEFSKKKKKGKLPKEARQTLLEWWNVHYRWPYPTVCLLISL 134
           ++LK +L + F   I  ++ E  +K++ GKLP +    L EWW  H +WPYPT       
Sbjct: 280 KELKHELKQGFKEKIVDIREEIMRKRRAGKLPGDTTSVLKEWWRTHSKWPYPT------- 339

Query: 135 QGQNPLLLIMQEADKVALAERTGLDQKQINNWFINQRKRHWKPSDN 181
                      E DK  L + TGL  KQINNWFINQRKR+W  + +
Sbjct: 340 -----------EEDKAKLVQETGLQLKQINNWFINQRKRNWNSNSS 367

[Close]
BLAST of Cp4.1LG01g15550 vs. NCBI nr
Match: gi|778704993|ref|XP_004135481.2| (PREDICTED: homeobox protein knotted-1-like 6 [Cucumis sativus])

HSP 1 Score: 249.2 bits (635), Expect = 6.0e-63
Identity = 129/160 (80.62%), Postives = 133/160 (83.12%), Query Frame = 1 

Query: 39  FSLVYSDNEGAVSSDEELSGGEMEVVEPETQTKGENRDLKDKLLRRFGSHISSLKLEFSK 98
           FS   SD +GAVSSDEELSGGEMEVVE E QTKGENRDLKDKLLRRFGSHIS+LKLEFSK
Sbjct: 184 FSRSLSD-DGAVSSDEELSGGEMEVVEAEAQTKGENRDLKDKLLRRFGSHISTLKLEFSK 243

Query: 99  KKKKGKLPKEARQTLLEWWNVHYRWPYPTVCLLISLQGQNPLLLIMQEADKVALAERTGL 158
           KKKKGKLPKEARQTL EWWNVHY+WPYPT                  EADKVALAERTGL
Sbjct: 244 KKKKGKLPKEARQTLFEWWNVHYKWPYPT------------------EADKVALAERTGL 303

Query: 159 DQKQINNWFINQRKRHWKPSDNMQFEGMDGLSSSRLFRED 199
           DQKQINNWFINQRKRHWKPS+NMQFEGMDGLSS R FRED
Sbjct: 304 DQKQINNWFINQRKRHWKPSENMQFEGMDGLSSGRFFRED 324

[Close]
BLAST of Cp4.1LG01g15550 vs. NCBI nr
Match: gi|659090761|ref|XP_008446187.1| (PREDICTED: homeobox protein knotted-1-like 6 [Cucumis melo])

HSP 1 Score: 244.6 bits (623), Expect = 1.5e-61
Identity = 129/161 (80.12%), Postives = 133/161 (82.61%), Query Frame = 1 

Query: 39  FSLVYSDNEGAVSSDEELSGGEMEVVEPETQTKGENRDLKDKLLRRFGSHISSLKLEFSK 98
           FS   SD +GAVSSDEELSGGEMEVVE E QTKGENRDLKDKLLRRFGSHIS+LKLEFSK
Sbjct: 184 FSRSLSD-DGAVSSDEELSGGEMEVVEAEAQTKGENRDLKDKLLRRFGSHISTLKLEFSK 243

Query: 99  KKKKGKLPKEARQTLLEWWNVHYRWPYPTVCLLISLQGQNPLLLIMQEADKVALAERTGL 158
           KKKKGKLPKEARQTL EWWNVHY+WPYPT                  EADKVALAERTGL
Sbjct: 244 KKKKGKLPKEARQTLFEWWNVHYKWPYPT------------------EADKVALAERTGL 303

Query: 159 DQKQINNWFINQRKRHWKPSDNMQFEGMD-GLSSSRLFRED 199
           DQKQINNWFINQRKRHWKPS+NMQFEGMD GLSS R FRED
Sbjct: 304 DQKQINNWFINQRKRHWKPSENMQFEGMDNGLSSGRFFRED 325

[Close]
BLAST of Cp4.1LG01g15550 vs. NCBI nr
Match: gi|1009153536|ref|XP_015894690.1| (PREDICTED: homeobox protein knotted-1-like 6 [Ziziphus jujuba])

HSP 1 Score: 208.0 bits (528), Expect = 1.5e-50
Identity = 104/147 (70.75%), Postives = 118/147 (80.27%), Query Frame = 1 

Query: 44  SDNEGAVSSDEELSGGEMEVVEPETQTKGENRDLKDKLLRRFGSHISSLKLEFSKKKKKG 103
           SD  G  SSDEE SGGE++V   E+Q +GE+RDLKD+LLRRFGSHIS+LKLEFSKKKKKG
Sbjct: 187 SDEGGGASSDEEFSGGEVDV--QESQLRGEDRDLKDRLLRRFGSHISTLKLEFSKKKKKG 246

Query: 104 KLPKEARQTLLEWWNVHYRWPYPTVCLLISLQGQNPLLLIMQEADKVALAERTGLDQKQI 163
           KLPKEARQTLL+WWNVHY+WPYPT                  E+DK+ALAE TGLDQKQI
Sbjct: 247 KLPKEARQTLLDWWNVHYKWPYPT------------------ESDKIALAETTGLDQKQI 306

Query: 164 NNWFINQRKRHWKPSDNMQFEGMDGLS 191
           NNWFINQRKRHWKPS+NMQF+ MDG+S
Sbjct: 307 NNWFINQRKRHWKPSENMQFDVMDGIS 313

[Close]
BLAST of Cp4.1LG01g15550 vs. NCBI nr
Match: gi|89953327|gb|ABD83273.1| (Fgenesh protein 1 [Beta vulgaris])

HSP 1 Score: 203.8 bits (517), Expect = 2.9e-49
Identity = 103/154 (66.88%), Postives = 124/154 (80.52%), Query Frame = 1 

Query: 46  NEGAVSSDEELSGGEMEVVEPETQTKGENRDLKDKLLRRFGSHISSLKLEFSKKKKKGKL 105
           +EG VSSDE+ SGGE++V   + Q K E RDLKD+LLRRFGSHISSLKLEFSKKKKKGKL
Sbjct: 9   DEGVVSSDEDYSGGEIDV--QDLQPKDEERDLKDQLLRRFGSHISSLKLEFSKKKKKGKL 68

Query: 106 PKEARQTLLEWWNVHYRWPYPTVC-LLISLQGQNPLLLIMQEADKVALAERTGLDQKQIN 165
           P+EARQ L EWWN HY+WPYPT+    +S+  Q+P + + QEADK+ALAE TGLDQ+QIN
Sbjct: 69  PREARQMLFEWWNAHYKWPYPTLAWTYVSIISQHPAIAV-QEADKIALAEMTGLDQRQIN 128

Query: 166 NWFINQRKRHWKPSDNMQFEGMDGLSSSRLFRED 199
           NWFINQRKRHWKPS+NMQ+  M+   S + F +D
Sbjct: 129 NWFINQRKRHWKPSENMQYALMENF-SGQYFTDD 158

[Close]
BLAST of Cp4.1LG01g15550 vs. NCBI nr
Match: gi|590694807|ref|XP_007044712.1| (KNOTTED1-like homeobox gene 6 [Theobroma cacao])

HSP 1 Score: 203.0 bits (515), Expect = 4.9e-49
Identity = 105/159 (66.04%), Postives = 122/159 (76.73%), Query Frame = 1 

Query: 40  SLVYSDNEGAVSSDEELSGGEMEVVEPETQTKGENRDLKDKLLRRFGSHISSLKLEFSKK 99
           S+  + +EGA SSDE+LSGGE++    E Q + E+RDLKD+LLRRFGSHIS+LKLEFSKK
Sbjct: 177 SIQGASDEGAASSDEDLSGGEVDA--QEAQPRSEDRDLKDRLLRRFGSHISTLKLEFSKK 236

Query: 100 KKKGKLPKEARQTLLEWWNVHYRWPYPTVCLLISLQGQNPLLLIMQEADKVALAERTGLD 159
           KKKGKLP+EARQTLL+WWNVHY+WPYPT                  EADK+ALAE TGLD
Sbjct: 237 KKKGKLPREARQTLLDWWNVHYKWPYPT------------------EADKIALAESTGLD 296

Query: 160 QKQINNWFINQRKRHWKPSDNMQFEGMDGLSSSRLFRED 199
           QKQINNWFINQRKRHWKPS++MQF  MD L S + F ED
Sbjct: 297 QKQINNWFINQRKRHWKPSESMQFAVMDSL-SGQFFTED 314

The following BLAST results are available for this feature:
BLAST of Cp4.1LG01g15550 vs. Swiss-Prot
Match NameE-valueIdentityDescription
KNAT6_ARATH2.3e-4663.82Homeobox protein knotted-1-like 6 OS=Arabidopsis thaliana GN=KNAT6 PE=1 SV=1[more]
KNAT2_ARATH5.6e-4559.38Homeobox protein knotted-1-like 2 OS=Arabidopsis thaliana GN=KNAT2 PE=1 SV=3[more]
KNAP1_MALDO5.4e-4059.15Homeobox protein knotted-1-like 1 OS=Malus domestica PE=2 SV=1[more]
KNAP2_MALDO9.3e-4060.00Homeobox protein knotted-1-like 2 OS=Malus domestica PE=2 SV=1[more]
KNAT1_ARATH1.6e-3959.73Homeobox protein knotted-1-like 1 OS=Arabidopsis thaliana GN=KNAT1 PE=1 SV=1[more]
BLAST of Cp4.1LG01g15550 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KVK5_CUCSA4.2e-6380.63Uncharacterized protein OS=Cucumis sativus GN=Csa_5G600390 PE=4 SV=1[more]
Q20CF2_BETVU2.0e-4966.88Fgenesh protein 1 OS=Beta vulgaris PE=4 SV=1[more]
A0A061EE17_THECC3.4e-4966.04KNOTTED1-like homeobox gene 6 OS=Theobroma cacao GN=TCM_010433 PE=4 SV=1[more]
A0A0B0NTB3_GOSAR4.5e-4969.48Homeobox protein knotted-1-like 6 OS=Gossypium arboreum GN=F383_01019 PE=4 SV=1[more]
V5K953_9ROSI5.8e-4967.97KNOX transcription factor 2 OS=Betula luminifera GN=KNOX2 PE=2 SV=1[more]
BLAST of Cp4.1LG01g15550 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G23380.21.3e-4763.82 KNOTTED1-like homeobox gene 6[more]
AT1G70510.13.2e-4659.38 KNOTTED-like from Arabidopsis thaliana 2[more]
AT4G08150.18.9e-4159.73 KNOTTED-like from Arabidopsis thaliana[more]
AT1G62360.11.9e-3550.65 KNOX/ELK homeobox transcription factor[more]
AT4G32040.12.4e-1739.62 KNOTTED1-like homeobox gene 5[more]
BLAST of Cp4.1LG01g15550 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778704993|ref|XP_004135481.2|6.0e-6380.63PREDICTED: homeobox protein knotted-1-like 6 [Cucumis sativus][more]
gi|659090761|ref|XP_008446187.1|1.5e-6180.12PREDICTED: homeobox protein knotted-1-like 6 [Cucumis melo][more]
gi|1009153536|ref|XP_015894690.1|1.5e-5070.75PREDICTED: homeobox protein knotted-1-like 6 [Ziziphus jujuba][more]
gi|89953327|gb|ABD83273.1|2.9e-4966.88Fgenesh protein 1 [Beta vulgaris][more]
gi|590694807|ref|XP_007044712.1|4.9e-4966.04KNOTTED1-like homeobox gene 6 [Theobroma cacao][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0043565sequence-specific DNA binding
GO:0003677DNA binding
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
Vocabulary: INTERPRO
TermDefinition
IPR017970Homeobox_CS
IPR009057Homeobox-like_sf
IPR008422Homeobox_KN_domain
IPR005539ELK_dom
IPR001356Homeobox_dom
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
cellular_component GO:0005634 nucleus
cellular_component GO:0005575 cellular_component
molecular_function GO:0043565 sequence-specific DNA binding
molecular_function GO:0003677 DNA binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG01g15550.1Cp4.1LG01g15550.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001356Homeobox domainSMARTSM00389HOX_1coord: 98..181
score: 2.
IPR001356Homeobox domainPROFILEPS50071HOMEOBOX_2coord: 148..177
score: 9
IPR005539ELK domainPFAMPF03789ELKcoord: 76..97
score: 7.
IPR005539ELK domainSMARTSM01188ELK_2coord: 76..97
score: 5.
IPR005539ELK domainPROFILEPS51213ELKcoord: 76..96
score: 9
IPR008422Homeobox KN domainPFAMPF05920Homeobox_KNcoord: 146..173
score: 1.8
IPR009057Homeodomain-likeGENE3DG3DSA:1.10.10.60coord: 101..178
score: 1.2
IPR009057Homeodomain-likeunknownSSF46689Homeodomain-likecoord: 97..186
score: 8.98
IPR017970Homeobox, conserved sitePROSITEPS00027HOMEOBOX_1coord: 152..175
scor
NoneNo IPR availablePANTHERPTHR11850HOMEOBOX PROTEIN TRANSCRIPTION FACTORScoord: 46..127
score: 9.9E-76coord: 146..190
score: 9.9
NoneNo IPR availablePANTHERPTHR11850:SF101SUBFAMILY NOT NAMEDcoord: 146..190
score: 9.9E-76coord: 46..127
score: 9.9

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG01g15550Cla000813Watermelon (97103) v1cpewmB376
Cp4.1LG01g15550Csa2G348930Cucumber (Chinese Long) v2cpecuB384
Cp4.1LG01g15550ClCG08G017820Watermelon (Charleston Gray)cpewcgB418
Cp4.1LG01g15550CSPI02G17200Wild cucumber (PI 183967)cpecpiB383
Cp4.1LG01g15550Lsi08G016620Bottle gourd (USVL1VR-Ls)cpelsiB383
Cp4.1LG01g15550Carg14482Silver-seed gourdcarcpeB1019
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG01g15550Wax gourdcpewgoB0529
Cp4.1LG01g15550Wax gourdcpewgoB0555
Cp4.1LG01g15550Cucurbita pepo (Zucchini)cpecpeB033
Cp4.1LG01g15550Cucurbita pepo (Zucchini)cpecpeB116
Cp4.1LG01g15550Cucurbita pepo (Zucchini)cpecpeB406
Cp4.1LG01g15550Cucumber (Gy14) v1cgycpeB0751
Cp4.1LG01g15550Cucumber (Gy14) v1cgycpeB1041
Cp4.1LG01g15550Cucurbita maxima (Rimu)cmacpeB186
Cp4.1LG01g15550Cucurbita maxima (Rimu)cmacpeB431
Cp4.1LG01g15550Cucurbita maxima (Rimu)cmacpeB720
Cp4.1LG01g15550Cucurbita maxima (Rimu)cmacpeB776
Cp4.1LG01g15550Cucurbita moschata (Rifu)cmocpeB162
Cp4.1LG01g15550Cucurbita moschata (Rifu)cmocpeB396
Cp4.1LG01g15550Cucurbita moschata (Rifu)cmocpeB673
Cp4.1LG01g15550Cucurbita moschata (Rifu)cmocpeB731
Cp4.1LG01g15550Wild cucumber (PI 183967)cpecpiB440
Cp4.1LG01g15550Cucumber (Chinese Long) v2cpecuB440
Cp4.1LG01g15550Bottle gourd (USVL1VR-Ls)cpelsiB353
Cp4.1LG01g15550Watermelon (Charleston Gray)cpewcgB389
Cp4.1LG01g15550Watermelon (97103) v1cpewmB428
Cp4.1LG01g15550Melon (DHL92) v3.5.1cpemeB364
Cp4.1LG01g15550Cucumber (Gy14) v2cgybcpeB210
Cp4.1LG01g15550Cucumber (Gy14) v2cgybcpeB649
Cp4.1LG01g15550Melon (DHL92) v3.6.1cpemedB424
Cp4.1LG01g15550Melon (DHL92) v3.6.1cpemedB467
Cp4.1LG01g15550Silver-seed gourdcarcpeB0344
Cp4.1LG01g15550Silver-seed gourdcarcpeB0710
Cp4.1LG01g15550Silver-seed gourdcarcpeB0888
Cp4.1LG01g15550Cucumber (Chinese Long) v3cpecucB0478
Cp4.1LG01g15550Cucumber (Chinese Long) v3cpecucB0544