Cp4.1LG01g14710 (gene) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG01g14710
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	Major facilitator superfamily protein
Location	Cp4.1LG01 : 7513181 .. 7513468 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGGTGGAGCACGAGGAGGATGAGCTGAGGGTTTTTTACAGGTTTTTGTATATCTCGTTGGGGCTGGCTGGGTTTTTGATGCTGATGATAATTTTGCAGCAGAAATTTAGTTTTGGGAGAGGGGAGTACGGTGGCAGTGCGGCGGTGGTTACTCTGTTGCTCCTTTTGCCGATTGTGGTTGTTGTTGCTCAGGAATTCAAGGCGTGGCGGCGCTTGAATAAGCCTCCGGTGATTGAGAATGGGCTTTCCTCCAAGCCGGTGAGTGAAAATTTAATCAATTTTTAA

mRNA sequence

ATGAAGGTGGAGCACGAGGAGGATGAGCTGAGGGTTTTTTACAGGTTTTTGTATATCTCGTTGGGGCTGGCTGGGTTTTTGATGCTGATGATAATTTTGCAGCAGAAATTTAGTTTTGGGAGAGGGGAGTACGGTGGCAGTGCGGCGGTGGTTACTCTGTTGCTCCTTTTGCCGATTGTGGTTGTTGTTGCTCAGGAATTCAAGGCGTGGCGGCGCTTGAATAAGCCTCCGGTGATTGAGAATGGGCTTTCCTCCAAGCCGGTGAGTGAAAATTTAATCAATTTTTAA

Coding sequence (CDS)

ATGAAGGTGGAGCACGAGGAGGATGAGCTGAGGGTTTTTTACAGGTTTTTGTATATCTCGTTGGGGCTGGCTGGGTTTTTGATGCTGATGATAATTTTGCAGCAGAAATTTAGTTTTGGGAGAGGGGAGTACGGTGGCAGTGCGGCGGTGGTTACTCTGTTGCTCCTTTTGCCGATTGTGGTTGTTGTTGCTCAGGAATTCAAGGCGTGGCGGCGCTTGAATAAGCCTCCGGTGATTGAGAATGGGCTTTCCTCCAAGCCGGTGAGTGAAAATTTAATCAATTTTTAA

Protein sequence

MKVEHEEDELRVFYRFLYISLGLAGFLMLMIILQQKFSFGRGEYGGSAAVVTLLLLLPIVVVVAQEFKAWRRLNKPPVIENGLSSKPVSENLINF

Homology

[Close]

BLAST of Cp4.1LG01g14710 vs. TrEMBL
Match: A0A0A0KWQ1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G622530 PE=4 SV=1)

HSP 1 Score: 152.1 bits (383), Expect = 3.3e-34
Identity = 77/94 (81.91%), Postives = 83/94 (88.30%), Query Frame = 1


Query: 1   MKVEHEEDELRVFYRFLYISLGLAGFLMLMIILQQKFSFGRGEYGGSAAVVTLLLLLPIV 60
           MKVEHEEDEL+VFYRFLYISLGLAGFLM+MIILQQKFSF RGE+GGSAAVVT LLLLPI 
Sbjct: 45  MKVEHEEDELKVFYRFLYISLGLAGFLMIMIILQQKFSFDRGEFGGSAAVVTFLLLLPIA 104

Query: 61  VVVAQEFKAWRRLNKPPVIENGLSSKPVSENLIN 95
           VVVAQEFK+WRRLNKP  +ENG+S  P S  L N
Sbjct: 105 VVVAQEFKSWRRLNKPAALENGISPSPGSPPLKN 138

[Close]

BLAST of Cp4.1LG01g14710 vs. TrEMBL
Match: F6HNC1_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_13s0019g05070 PE=4 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 4.3e-18
Identity = 51/99 (51.52%), Postives = 73/99 (73.74%), Query Frame = 1


Query: 1   MKVEHEEDELRVFYRFLYISLGLAGFLMLMIILQQKFSFGRGEYGGSAAVVTLLLLLPIV 60
           MKV  +E+EL+VFY FLYISLGLAGFLM++II++++ +F + EYGGSAA+V LLL LP+ 
Sbjct: 210 MKVIRQENELKVFYNFLYISLGLAGFLMIIIIVEKELTFSQSEYGGSAALVLLLLFLPLA 269

Query: 61  VVVAQEFKAWR----RLNKPP---VIENGLSSKPVSENL 93
           VV+ +EFK W+     L +PP   +I   L+++  S +L
Sbjct: 270 VVIQEEFKLWKIKQEALREPPQLKIIAENLNTETSSSSL 308

[Close]

BLAST of Cp4.1LG01g14710 vs. TrEMBL
Match: A5ANB9_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_011832 PE=4 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 4.3e-18
Identity = 51/99 (51.52%), Postives = 73/99 (73.74%), Query Frame = 1


Query: 1   MKVEHEEDELRVFYRFLYISLGLAGFLMLMIILQQKFSFGRGEYGGSAAVVTLLLLLPIV 60
           MKV  +E+EL+VFY FLYISLGLAGFLM++II++++ +F + EYGGSAA+V LLL LP+ 
Sbjct: 210 MKVIRQENELKVFYNFLYISLGLAGFLMIIIIVEKELTFSQSEYGGSAALVLLLLFLPLA 269

Query: 61  VVVAQEFKAWR----RLNKPP---VIENGLSSKPVSENL 93
           VV+ +EFK W+     L +PP   +I   L+++  S +L
Sbjct: 270 VVIQEEFKLWKIXQZALREPPQLKIIAENLNTETSSSSL 308

[Close]

BLAST of Cp4.1LG01g14710 vs. TrEMBL
Match: A0A061FVJ4_THECC (Major facilitator superfamily protein OS=Theobroma cacao GN=TCM_043319 PE=4 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 1.7e-17
Identity = 51/94 (54.26%), Postives = 70/94 (74.47%), Query Frame = 1


Query: 1   MKVEHEEDELRVFYRFLYISLGLAGFLMLMIILQQKFSFGRGEYGGSAAVVTLLLLLPIV 60
           MKV H+ +E++VFY+FLYISLGLA FLM++II+++KF F R EYGGSAA+V  LL LP+ 
Sbjct: 208 MKVAHQANEVKVFYKFLYISLGLASFLMIIIIVEKKFLFTRPEYGGSAAMVLFLLFLPLG 267

Query: 61  VVVAQEFKAW----RRLNKPPVIENGLSSKPVSE 91
           VV+ +E+K W    R LN P  ++  ++ KP SE
Sbjct: 268 VVIMEEYKLWEAKNRALNDPSPLKI-VTEKPSSE 300

[Close]

BLAST of Cp4.1LG01g14710 vs. TrEMBL
Match: A0A103Y9J3_CYNCS (Major facilitator superfamily OS=Cynara cardunculus var. scolymus GN=Ccrd_016639 PE=4 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 8.2e-17
Identity = 49/98 (50.00%), Postives = 65/98 (66.33%), Query Frame = 1


Query: 1   MKVEHEEDELRVFYRFLYISLGLAGFLMLMIILQQKFSFGRGEYGGSAAVVTLLLLLPIV 60
           MKV  + +EL+VFY  LYISLGLAGFLM++II+++   F R EYGGSAAVV  LL LPI 
Sbjct: 207 MKVTRQANELKVFYDLLYISLGLAGFLMIIIIVEKTIQFPRAEYGGSAAVVVFLLFLPIA 266

Query: 61  VVVAQEFKAWRR----LNKPPVIENGLSSKPVSENLIN 95
           VV+ +E+  W+     LN PP I+    + PV    ++
Sbjct: 267 VVIREEYSIWKNKKASLNDPPQIKVVTDNPPVPNTTVS 304

[Close]

BLAST of Cp4.1LG01g14710 vs. TAIR10
Match: AT2G39210.1 (AT2G39210.1 Major facilitator superfamily protein)

HSP 1 Score: 88.6 bits (218), Expect = 2.3e-18
Identity = 49/91 (53.85%), Postives = 66/91 (72.53%), Query Frame = 1


Query: 1   MKVEHEEDELRVFYRFLYISLGLAGFLMLMIILQQKFSFGRGEYGGSAAVVTLLLLLPIV 60
           MKV+ + +EL+VFY FLYISLGLA FLM++II+ +   F + E+GGSAAVV +LLLLPI+
Sbjct: 204 MKVKRQTNELKVFYNFLYISLGLATFLMVVIIINKLSGFTQSEFGGSAAVVIVLLLLPII 263

Query: 61  VVVAQEFKAWRR----LNKPPVIENGLSSKP 88
           VV+ +E K W+     LN P  I N ++ KP
Sbjct: 264 VVILEEKKLWKEKQVALNDPAPI-NVVTEKP 293

[Close]

BLAST of Cp4.1LG01g14710 vs. TAIR10
Match: AT2G28120.1 (AT2G28120.1 Major facilitator superfamily protein)

HSP 1 Score: 63.5 bits (153), Expect = 7.8e-11
Identity = 32/75 (42.67%), Postives = 45/75 (60.00%), Query Frame = 1


Query: 2   KVEHEEDELRVFYRFLYISLGLAGFLMLMIILQQKFSFGRGEYGGSAAVVTLLLLLPIVV 61
           KV  + +EL VFY+FLYIS+ LA FLM M I +++  F +  Y  SA +   LL +P+ V
Sbjct: 201 KVVRQRNELSVFYQFLYISIFLALFLMAMNIAEKQVHFSKAAYAASATICCALLFVPLTV 260

Query: 62  VVAQEFKAWRRLNKP 77
            V QE + W  +  P
Sbjct: 261 SVKQELEVWNMMKLP 275

[Close]

BLAST of Cp4.1LG01g14710 vs. NCBI nr
Match: gi|659091946|ref|XP_008446818.1| (PREDICTED: uncharacterized protein LOC103489434 [Cucumis melo])

HSP 1 Score: 154.5 bits (389), Expect = 9.6e-35
Identity = 79/94 (84.04%), Postives = 83/94 (88.30%), Query Frame = 1


Query: 1   MKVEHEEDELRVFYRFLYISLGLAGFLMLMIILQQKFSFGRGEYGGSAAVVTLLLLLPIV 60
           MKVEHEEDEL+VFYRFLYISLGLAGFLM+MIILQQKFSF RGEYGGSAAVVT LLLLPI 
Sbjct: 199 MKVEHEEDELKVFYRFLYISLGLAGFLMIMIILQQKFSFDRGEYGGSAAVVTFLLLLPIA 258

Query: 61  VVVAQEFKAWRRLNKPPVIENGLSSKPVSENLIN 95
           VVVAQEFK+WRRLNKP  IENG+S  P S  L N
Sbjct: 259 VVVAQEFKSWRRLNKPAAIENGISPSPGSPPLKN 292

[Close]

BLAST of Cp4.1LG01g14710 vs. NCBI nr
Match: gi|449449501|ref|XP_004142503.1| (PREDICTED: uncharacterized protein LOC101205503 [Cucumis sativus])

HSP 1 Score: 152.1 bits (383), Expect = 4.8e-34
Identity = 77/94 (81.91%), Postives = 83/94 (88.30%), Query Frame = 1


Query: 1   MKVEHEEDELRVFYRFLYISLGLAGFLMLMIILQQKFSFGRGEYGGSAAVVTLLLLLPIV 60
           MKVEHEEDEL+VFYRFLYISLGLAGFLM+MIILQQKFSF RGE+GGSAAVVT LLLLPI 
Sbjct: 199 MKVEHEEDELKVFYRFLYISLGLAGFLMIMIILQQKFSFDRGEFGGSAAVVTFLLLLPIA 258

Query: 61  VVVAQEFKAWRRLNKPPVIENGLSSKPVSENLIN 95
           VVVAQEFK+WRRLNKP  +ENG+S  P S  L N
Sbjct: 259 VVVAQEFKSWRRLNKPAALENGISPSPGSPPLKN 292

[Close]

BLAST of Cp4.1LG01g14710 vs. NCBI nr
Match: gi|700197059|gb|KGN52236.1| (hypothetical protein Csa_5G622530 [Cucumis sativus])

HSP 1 Score: 152.1 bits (383), Expect = 4.8e-34
Identity = 77/94 (81.91%), Postives = 83/94 (88.30%), Query Frame = 1


Query: 1   MKVEHEEDELRVFYRFLYISLGLAGFLMLMIILQQKFSFGRGEYGGSAAVVTLLLLLPIV 60
           MKVEHEEDEL+VFYRFLYISLGLAGFLM+MIILQQKFSF RGE+GGSAAVVT LLLLPI 
Sbjct: 45  MKVEHEEDELKVFYRFLYISLGLAGFLMIMIILQQKFSFDRGEFGGSAAVVTFLLLLPIA 104

Query: 61  VVVAQEFKAWRRLNKPPVIENGLSSKPVSENLIN 95
           VVVAQEFK+WRRLNKP  +ENG+S  P S  L N
Sbjct: 105 VVVAQEFKSWRRLNKPAALENGISPSPGSPPLKN 138

[Close]

BLAST of Cp4.1LG01g14710 vs. NCBI nr
Match: gi|659113366|ref|XP_008456537.1| (PREDICTED: uncharacterized protein LOC103496460 [Cucumis melo])

HSP 1 Score: 101.3 bits (251), Expect = 9.6e-19
Identity = 48/71 (67.61%), Postives = 58/71 (81.69%), Query Frame = 1


Query: 1   MKVEHEEDELRVFYRFLYISLGLAGFLMLMIILQQKFSFGRGEYGGSAAVVTLLLLLPIV 60
           MKV+H  +EL VFYRFLY+SLGLAGFLM+MI+LQQKF F R EY  SAAVV  LL LPI 
Sbjct: 223 MKVQHRPNELTVFYRFLYVSLGLAGFLMVMIVLQQKFKFSRIEYSSSAAVVVFLLFLPIF 282

Query: 61  VVVAQEFKAWR 72
           +V+A+++K WR
Sbjct: 283 IVIAEDYKFWR 293

[Close]

BLAST of Cp4.1LG01g14710 vs. NCBI nr
Match: gi|147841867|emb|CAN66928.1| (hypothetical protein VITISV_011832 [Vitis vinifera])

HSP 1 Score: 98.6 bits (244), Expect = 6.2e-18
Identity = 51/99 (51.52%), Postives = 73/99 (73.74%), Query Frame = 1


Query: 1   MKVEHEEDELRVFYRFLYISLGLAGFLMLMIILQQKFSFGRGEYGGSAAVVTLLLLLPIV 60
           MKV  +E+EL+VFY FLYISLGLAGFLM++II++++ +F + EYGGSAA+V LLL LP+ 
Sbjct: 210 MKVIRQENELKVFYNFLYISLGLAGFLMIIIIVEKELTFSQSEYGGSAALVLLLLFLPLA 269

Query: 61  VVVAQEFKAWR----RLNKPP---VIENGLSSKPVSENL 93
           VV+ +EFK W+     L +PP   +I   L+++  S +L
Sbjct: 270 VVIQEEFKLWKIXQZALREPPQLKIIAENLNTETSSSSL 308

The following BLAST results are available for this feature:

BLAST of Cp4.1LG01g14710 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG01g14710 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KWQ1_CUCSA	3.3e-34	81.91	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G622530 PE=4 SV=1	[more]
F6HNC1_VITVI	4.3e-18	51.52	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_13s0019g05070 PE=4 SV=...	[more]
A5ANB9_VITVI	4.3e-18	51.52	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_011832 PE=4 SV=1	[more]
A0A061FVJ4_THECC	1.7e-17	54.26	Major facilitator superfamily protein OS=Theobroma cacao GN=TCM_043319 PE=4 SV=1	[more]
A0A103Y9J3_CYNCS	8.2e-17	50.00	Major facilitator superfamily OS=Cynara cardunculus var. scolymus GN=Ccrd_016639...	[more]

BLAST of Cp4.1LG01g14710 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G39210.1	2.3e-18	53.85	Major facilitator superfamily protein	[more]
AT2G28120.1	7.8e-11	42.67	Major facilitator superfamily protein	[more]

BLAST of Cp4.1LG01g14710 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659091946\|ref\|XP_008446818.1\|	9.6e-35	84.04	PREDICTED: uncharacterized protein LOC103489434 [Cucumis melo]	[more]
gi\|449449501\|ref\|XP_004142503.1\|	4.8e-34	81.91	PREDICTED: uncharacterized protein LOC101205503 [Cucumis sativus]	[more]
gi\|700197059\|gb\|KGN52236.1\|	4.8e-34	81.91	hypothetical protein Csa_5G622530 [Cucumis sativus]	[more]
gi\|659113366\|ref\|XP_008456537.1\|	9.6e-19	67.61	PREDICTED: uncharacterized protein LOC103496460 [Cucumis melo]	[more]
gi\|147841867\|emb\|CAN66928.1\|	6.2e-18	51.52	hypothetical protein VITISV_011832 [Vitis vinifera]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR010658	Nodulin-like

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0044765	single-organism transport
biological_process	GO:0002239	response to oomycetes
biological_process	GO:0055085	transmembrane transport
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0009506	plasmodesma
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG01g14710.1	Cp4.1LG01g14710.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR010658	Nodulin-like	PFAM	PF06813	Nodulin-like	coord: 3..63 score: 1.
None	No IPR available	PANTHER	PTHR21576	UNCHARACTERIZED NODULIN-LIKE PROTEIN	coord: 1..75 score: 1.2
None	No IPR available	PANTHER	PTHR21576:SF40	SUBFAMILY NOT NAMED	coord: 1..75 score: 1.2

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cp4.1LG01g14710	MELO3C012398.2	Melon (DHL92) v3.6.1	cpemedB423
Cp4.1LG01g14710	MELO3C019835.2	Melon (DHL92) v3.6.1	cpemedB469
Cp4.1LG01g14710	CsaV3_5G035920	Cucumber (Chinese Long) v3	cpecucB0543
Cp4.1LG01g14710	Bhi04G001056	Wax gourd	cpewgoB0535
Cp4.1LG01g14710	Bhi07G000695	Wax gourd	cpewgoB0569
Cp4.1LG01g14710	CsGy5G026220	Cucumber (Gy14) v2	cgybcpeB648

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cp4.1LG01g14710	Silver-seed gourd	carcpeB0369
Cp4.1LG01g14710	Silver-seed gourd	carcpeB0678
Cp4.1LG01g14710	Silver-seed gourd	carcpeB0963
Cp4.1LG01g14710	Silver-seed gourd	carcpeB1177
Cp4.1LG01g14710	Cucurbita pepo (Zucchini)	cpecpeB040
Cp4.1LG01g14710	Cucurbita pepo (Zucchini)	cpecpeB208
Cp4.1LG01g14710	Cucurbita pepo (Zucchini)	cpecpeB379
Cp4.1LG01g14710	Cucumber (Gy14) v1	cgycpeB0806
Cp4.1LG01g14710	Cucurbita maxima (Rimu)	cmacpeB313
Cp4.1LG01g14710	Cucurbita maxima (Rimu)	cmacpeB429
Cp4.1LG01g14710	Cucurbita maxima (Rimu)	cmacpeB720
Cp4.1LG01g14710	Cucurbita maxima (Rimu)	cmacpeB733
Cp4.1LG01g14710	Cucurbita moschata (Rifu)	cmocpeB275
Cp4.1LG01g14710	Cucurbita moschata (Rifu)	cmocpeB392
Cp4.1LG01g14710	Cucurbita moschata (Rifu)	cmocpeB673
Cp4.1LG01g14710	Cucurbita moschata (Rifu)	cmocpeB689
Cp4.1LG01g14710	Wild cucumber (PI 183967)	cpecpiB439
Cp4.1LG01g14710	Cucumber (Chinese Long) v2	cpecuB439
Cp4.1LG01g14710	Bottle gourd (USVL1VR-Ls)	cpelsiB352
Cp4.1LG01g14710	Bottle gourd (USVL1VR-Ls)	cpelsiB384
Cp4.1LG01g14710	Watermelon (Charleston Gray)	cpewcgB388
Cp4.1LG01g14710	Watermelon (Charleston Gray)	cpewcgB416
Cp4.1LG01g14710	Watermelon (97103) v1	cpewmB394
Cp4.1LG01g14710	Watermelon (97103) v1	cpewmB427
Cp4.1LG01g14710	Melon (DHL92) v3.5.1	cpemeB363
Cp4.1LG01g14710	Melon (DHL92) v3.5.1	cpemeB404