Cp4.1LG01g13940 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG01g13940
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionATP synthase subunit beta
LocationCp4.1LG01 : 7913254 .. 7915598 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GGGAGTCGATCACAGCCTCCATAGAACCATCCACTCCTCAGCTCTCTGAAGCCCTTCTCATGGCTTCACGCAGACTTCTCTCCTCTCTTCTCAGATCCTCCGCCGGAAGAGCTTCCTCCAGATCTCCTCTCTCCAATCGCAATCCAAGAATTTCACCCACTACAACTTCACGCGCTTCTCCTTACGGGTATATTCTCTCTCGCGTGGCCGAGTATGCGACTTCTGCTGCGGCGGCTGCGCCTCCATCACCACTGCCTCTGGCGAAGGATGCCGCAAAAGGAGGGAAGATTACTGATGAGTTTACTGGTGCCGTGCGCTTGGACAGGTGTGTCAGGTGATTGGTGCTGTCGTCGATGTGAGATTCGATGAAGGATTGCCGCCTATCCTAAGGGCTCTTGAGGTGCTTGGCAACCCGATCCGTTTAGTGCTCGAGGTTGCTCAGCATTTGGGGGAGAACATGGTTCGGACTATTGCTATGGATGGGACTAAAGGGCTTGTTAGAGGACAGCGAGTGCTCAATACTGGTTCTCCTATCACTGTGAGTTTTGGTATTTGCTTCGTCGCTGCTACTCATTTGATTAGGTTAAATGGCGTTTTCTTGTTTATTTACGTTTTGACATTTGGTTGTGTCGTCATATCGGTGTGGTATGAATGAAGTGGAGATGGATTTCTTTTTCGCATGACATGGACTTGGTGATCAATGATATCCTCAGATCCCTTTATTATTGTTACATTTCTACAAATTTGTACACAATGTAAGATTTTATGTTGGAAATTTGAGCAGAATGAGTTGATGTGGACAACTATTGTAGGGAATTATAATTCGGTAGTTCGACTTATTTCCCCTTGTTATGATAACTTCAATGTAAGGAAAGTCTTCTAGACCTGTTCCTTTGTGAAATATGTTAGTTTTAAAGTAGGCTAATGCTTAATAAAGGAGATTTGAACATTGTCTAATTTTTACCAAATCTCGTGCTCCGGTTTACTATCTTTGATTGAATGGTGAACTGGTATTTTGTAGATGGTCATCAATTCTGTATTTTCTGTTGAATCCTGCAGCTGATGCACGTTCTTGAGTTTGATTGCTTCTTCCACAGATCAAGACATCATGCGTTTTATTATGTTTCGCTCCTATCTTTATTATGTATTATGTTTTGCTCTGCCTTTTGGACAATTTGTTTCTTGGTTAGGTTGTAAATGTTCATAACATTTGATTTGAATTGGTTATTTGGATTAGATTTGATTTGGTTACTATGAATTAGATTTAATCATAGAGATTTGGGGAGTTTTGTGTGTCACATTGTATTTCTTGATTTCTTGAGTGACATAACACTTTGTTTATTAGTGATTGGTTGCTACCCGTAGATGTAGGGGAACTTCTTCTCTCCGAACCACATAATGGTGTCTGTCTATTTGTGTAATTTCGTTCATTGATGTTGTGAGTGTTGGTGTCTCTTTGTGTAATTTCGTTCATTGGTGTTGTGAGTATTGGTGTCTCTTTGTGTAATTCCGTCCATTGGTGTTGTGAGTCTTGATGTCTCTTTGTGTAATTCCATTCATTGGTGTTGTGAGTATTGGTGTCTCTTTGTGTAATTCCGTTCATTGGTGTTGTGAGTCTTGATGTCTCTTTGTGTAATTTCGTTCATTGGTGTTGTGAGTATTGGTGTCTCTTTGTGTAATTCCGTTCATTGGTGTTGTGAGTCTTGATGTCTCTTTGTGTAATTCCATTCATTGGTGTTGTGAGTATTGGTGTCTCTTTGTGTAATTCCGTTCATTGGTGTTGTGAGTCTTGATGTCTCTTTGTGTAATTTCGTTCATTGGTGTTGTGAGTATTGGTGTCTCTTTGTGTAATTCCGTTCATTGGTGTTGTGAGTCTTAGTGTCTCTTTGTGTAATTCCATTCATTGGTGTTGTGAGTACATTTGTTCCACATTGGGCGTACACCATTTTAGCCCAACTTTTTTCAGGATAATCCATGGGATTTTTCTTTTCTAACATTTAAAAACTTGACAGGTGCCCGTTGGTAGGGCTACACTTCCTTCATTCTGAAAATTATGAAGATTGATCACTGAGGAGGTGCTGGAGAATAATACCAGCTACTACAGGGTTTCAATTTTTGGTTGAGATGCAACGCAAGCAGAGATCTTCTGCTCTGTTTCTAAGTTTTGTTGCAGAATCTGAAAGAGAGTTTCACCAGCATACGGCTTCTCCCTGTGCCCCTTTGGCCTTTGCTGTGTTCTTTTAACTAGGGGAGGAAGAAACAGCAGGACATGTACTAATTTTGCCATTTTTTCTTTACAACAATTTACCACATTTTATAGTATAATCAAATGGTTGAGTATTATT

mRNA sequence

GGGAGTCGATCACAGCCTCCATAGAACCATCCACTCCTCAGCTCTCTGAAGCCCTTCTCATGGCTTCACGCAGACTTCTCTCCTCTCTTCTCAGATCCTCCGCCGGAAGAGCTTCCTCCAGATCTCCTCTCTCCAATCGCAATCCAAGAATTTCACCCACTACAACTTCACGCGCTTCTCCTTACGGGTGTGTCAGGTGATTGGTGCTGTCGTCGATGTGAGATTCGATGAAGGATTGCCGCCTATCCTAAGGGCTCTTGAGGTGCTTGGCAACCCGATCCGTTTAGTGCTCGAGGTTGCTCAGCATTTGGGGGAGAACATGGTTCGGACTATTGCTATGGATGGGACTAAAGGGCTTGTTAGAGGACAGCGAGTGCTCAATACTGGTTCTCCTATCACTGTGCCCGTTGGTAGGGCTACACTTCCTTCATTCTGAAAATTATGAAGATTGATCACTGAGGAGGTGCTGGAGAATAATACCAGCTACTACAGGGTTTCAATTTTTGGTTGAGATGCAACGCAAGCAGAGATCTTCTGCTCTGTTTCTAAGTTTTGTTGCAGAATCTGAAAGAGAGTTTCACCAGCATACGGCTTCTCCCTGTGCCCCTTTGGCCTTTGCTGTGTTCTTTTAACTAGGGGAGGAAGAAACAGCAGGACATGTACTAATTTTGCCATTTTTTCTTTACAACAATTTACCACATTTTATAGTATAATCAAATGGTTGAGTATTATT

Coding sequence (CDS)

ATGGCTTCACGCAGACTTCTCTCCTCTCTTCTCAGATCCTCCGCCGGAAGAGCTTCCTCCAGATCTCCTCTCTCCAATCGCAATCCAAGAATTTCACCCACTACAACTTCACGCGCTTCTCCTTACGGGTGTGTCAGGTGA

Protein sequence

MASRRLLSSLLRSSAGRASSRSPLSNRNPRISPTTTSRASPYGCVR
Homology
[Close]
BLAST of Cp4.1LG01g13940 vs. Swiss-Prot
Match: ATPBM_HEVBR (ATP synthase subunit beta, mitochondrial OS=Hevea brasiliensis GN=ATPB PE=2 SV=1)

HSP 1 Score: 51.6 bits (122), Expect = 2.7e-06
Identity = 31/46 (67.39%), Postives = 39/46 (84.78%), Query Frame = 1 

Query: 1  MASRRLLSSLLRSSAGRASSRSPLSNRNPRI---SPTTTSRASPYG 44
          MASRRLLSSLLRSS+ R+ S+SP+SN NP++   SP++ SRASPYG
Sbjct: 1  MASRRLLSSLLRSSSRRSVSKSPISNINPKLSSSSPSSKSRASPYG 46

[Close]
BLAST of Cp4.1LG01g13940 vs. TrEMBL
Match: A0A0A0KTA5_CUCSA (ATP synthase subunit beta OS=Cucumis sativus GN=Csa_5G611600 PE=3 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 2.0e-08
Identity = 38/45 (84.44%), Postives = 40/45 (88.89%), Query Frame = 1 

Query: 1  MASRRLLSSLLRSSAGRASSRSPLSNRNPRISPTTTSRASPYGCV 46
          MASRRLLSSLLRSSA RASSRSP SN NPRISP+TTSRASP G +
Sbjct: 1  MASRRLLSSLLRSSARRASSRSPFSNPNPRISPSTTSRASPRGYI 45

[Close]
BLAST of Cp4.1LG01g13940 vs. TrEMBL
Match: A0A0A0KPJ2_CUCSA (ATP synthase subunit beta OS=Cucumis sativus GN=Csa_5G576620 PE=3 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 3.2e-06
Identity = 34/43 (79.07%), Postives = 38/43 (88.37%), Query Frame = 1 

Query: 1  MASRRLLSSLLRSSAGRASSRSPLSNRNPRISPTTTSRASPYG 44
          MASRRLLSSLLRSSA R+SSRSP+S+ NPRI  + TSRASPYG
Sbjct: 1  MASRRLLSSLLRSSARRSSSRSPISSPNPRIPLSNTSRASPYG 43

[Close]
BLAST of Cp4.1LG01g13940 vs. NCBI nr
Match: gi|449434570|ref|XP_004135069.1| (PREDICTED: ATP synthase subunit beta, mitochondrial [Cucumis sativus])

HSP 1 Score: 65.5 bits (158), Expect = 2.8e-08
Identity = 38/45 (84.44%), Postives = 40/45 (88.89%), Query Frame = 1 

Query: 1  MASRRLLSSLLRSSAGRASSRSPLSNRNPRISPTTTSRASPYGCV 46
          MASRRLLSSLLRSSA RASSRSP SN NPRISP+TTSRASP G +
Sbjct: 1  MASRRLLSSLLRSSARRASSRSPFSNPNPRISPSTTSRASPRGYI 45

[Close]
BLAST of Cp4.1LG01g13940 vs. NCBI nr
Match: gi|659091685|ref|XP_008446677.1| (PREDICTED: ATP synthase subunit beta, mitochondrial [Cucumis melo])

HSP 1 Score: 63.9 bits (154), Expect = 8.2e-08
Identity = 37/45 (82.22%), Postives = 39/45 (86.67%), Query Frame = 1 

Query: 1  MASRRLLSSLLRSSAGRASSRSPLSNRNPRISPTTTSRASPYGCV 46
          MASRRLLSS LRSSA RASSRSP SN NPRISP+TTSRASP G +
Sbjct: 1  MASRRLLSSFLRSSARRASSRSPFSNPNPRISPSTTSRASPCGYI 45

[Close]
BLAST of Cp4.1LG01g13940 vs. NCBI nr
Match: gi|449465916|ref|XP_004150673.1| (PREDICTED: ATP synthase subunit beta, mitochondrial-like [Cucumis sativus])

HSP 1 Score: 58.2 bits (139), Expect = 4.5e-06
Identity = 34/43 (79.07%), Postives = 38/43 (88.37%), Query Frame = 1 

Query: 1  MASRRLLSSLLRSSAGRASSRSPLSNRNPRISPTTTSRASPYG 44
          MASRRLLSSLLRSSA R+SSRSP+S+ NPRI  + TSRASPYG
Sbjct: 1  MASRRLLSSLLRSSARRSSSRSPISSPNPRIPLSNTSRASPYG 43

The following BLAST results are available for this feature:
BLAST of Cp4.1LG01g13940 vs. Swiss-Prot
Match NameE-valueIdentityDescription
ATPBM_HEVBR2.7e-0667.39ATP synthase subunit beta, mitochondrial OS=Hevea brasiliensis GN=ATPB PE=2 SV=1[more]
BLAST of Cp4.1LG01g13940 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KTA5_CUCSA2.0e-0884.44ATP synthase subunit beta OS=Cucumis sativus GN=Csa_5G611600 PE=3 SV=1[more]
A0A0A0KPJ2_CUCSA3.2e-0679.07ATP synthase subunit beta OS=Cucumis sativus GN=Csa_5G576620 PE=3 SV=1[more]
BLAST of Cp4.1LG01g13940 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG01g13940 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449434570|ref|XP_004135069.1|2.8e-0884.44PREDICTED: ATP synthase subunit beta, mitochondrial [Cucumis sativus][more]
gi|659091685|ref|XP_008446677.1|8.2e-0882.22PREDICTED: ATP synthase subunit beta, mitochondrial [Cucumis melo][more]
gi|449465916|ref|XP_004150673.1|4.5e-0679.07PREDICTED: ATP synthase subunit beta, mitochondrial-like [Cucumis sativus][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0016887ATPase activity
GO:0005524ATP binding
Vocabulary: Biological Process
TermDefinition
GO:0006754ATP biosynthetic process
Vocabulary: Cellular Component
TermDefinition
GO:0000275mitochondrial proton-transporting ATP synthase complex, catalytic core F(1)
Vocabulary: INTERPRO
TermDefinition
IPR020971ATP_synth_F1_beta_su
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015991 ATP hydrolysis coupled proton transport
biological_process GO:0015986 ATP synthesis coupled proton transport
biological_process GO:0006754 ATP biosynthetic process
cellular_component GO:0000275 mitochondrial proton-transporting ATP synthase complex, catalytic core F(1)
molecular_function GO:0005524 ATP binding
molecular_function GO:0046933 proton-transporting ATP synthase activity, rotational mechanism
molecular_function GO:0016887 ATPase activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG01g13940.1Cp4.1LG01g13940.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR020971ATP synthase, F1 beta subunitPFAMPF11421Synthase_betacoord: 1..43
score: 3.3

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG01g13940Wax gourdcpewgoB0557
Cp4.1LG01g13940Cucurbita pepo (Zucchini)cpecpeB040
Cp4.1LG01g13940Cucurbita pepo (Zucchini)cpecpeB205
Cp4.1LG01g13940Cucumber (Gy14) v1cgycpeB0750
Cp4.1LG01g13940Cucurbita maxima (Rimu)cmacpeB323
Cp4.1LG01g13940Cucurbita maxima (Rimu)cmacpeB429
Cp4.1LG01g13940Cucurbita maxima (Rimu)cmacpeB720
Cp4.1LG01g13940Cucurbita maxima (Rimu)cmacpeB737
Cp4.1LG01g13940Cucurbita moschata (Rifu)cmocpeB285
Cp4.1LG01g13940Cucurbita moschata (Rifu)cmocpeB392
Cp4.1LG01g13940Cucurbita moschata (Rifu)cmocpeB673
Cp4.1LG01g13940Cucurbita moschata (Rifu)cmocpeB691
Cp4.1LG01g13940Wild cucumber (PI 183967)cpecpiB439
Cp4.1LG01g13940Cucumber (Chinese Long) v2cpecuB439
Cp4.1LG01g13940Bottle gourd (USVL1VR-Ls)cpelsiB352
Cp4.1LG01g13940Watermelon (Charleston Gray)cpewcgB388
Cp4.1LG01g13940Watermelon (Charleston Gray)cpewcgB401
Cp4.1LG01g13940Watermelon (97103) v1cpewmB427
Cp4.1LG01g13940Melon (DHL92) v3.5.1cpemeB363
Cp4.1LG01g13940Cucumber (Gy14) v2cgybcpeB648
Cp4.1LG01g13940Melon (DHL92) v3.6.1cpemedB423
Cp4.1LG01g13940Silver-seed gourdcarcpeB1177
Cp4.1LG01g13940Silver-seed gourdcarcpeB1466
Cp4.1LG01g13940Cucumber (Chinese Long) v3cpecucB0539
Cp4.1LG01g13940Cucumber (Chinese Long) v3cpecucB0543