Cp4.1LG01g13860 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG01g13860
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionElongator complex protein 2
LocationCp4.1LG01 : 7991857 .. 7994150 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTTCTGGCGGCGGCGACGAGGTGGAAGTCAATGGAGCGTTCATAGGAGCAGGGTGTAACATAATAGTGAACAACGTTCCTTGGGGAGCCTGTGATTTAGTGGCTTTCGGCGCTCAAAATGCCGACGCTATCGCTATCGCTATCTTCTCCCCTAAGGTGCGTTAAGTACTACGATGCACTTCCTCTTTCGATTTTACATAACCGGAGAAATGCCGAACTCCGCTTCCTTTTTGTTCTCCTCAATTTCGAATTTCACAGTCTGCACAAATTTTGACGACCTTTTCCGGTCACAAATTTCATGGGCTAGATCCGGCGATTATATTATTTCAGTCGGGCATGACCAGGTGAGGTGCAACCAATTTGGCTATCTGCCTTGTCATCATAACTCATTGTGTGGATTGAACCTGAATATGAAAATTTTGCTAGTATGCCTCGTTTTATCTCGTTGTGTCATATGAAAGTGTATTTTATGAACCCTAGTTTTTCTCATCACTCCAGCTAAGAAAAAATTGTGAGATTTTCTGGCTCTCACAATTAGAAAGTTGGTAGAGACTTTGAAGCTCCATTATCGTTTTTGAAGTCACTGAGTCATGCCACACTGCACAAATTTGTGGCCACGGATGATGATCTTGTGTTCATATTTTAGGTGCTAGTCGCCTCTTGGGCTTTCGCAGAAACCTATTGCTGTTCACTGTGAGTCTTTCTTCAATCTTCCCCCATTGACTGGCCGTTTCTCAGTCTCTCAGTTTCAGTTTGGCTGATCACGGACGAGTTACTGATCATCACCTTCGGAAGTTATTGCCTCACCAACTAGCTAACCAGACACAAGCCCCTCTTCGGGCAGATTCCTCCTCTTGCTCTTCAGCGTACAGGGTATTAGCAACCATTTCTAGCTGTTGTTCCCCTCTCAAGGGCAGGTTCTTATGCGTTACTCACCCGTCTGCCATTTGATTAAGTTAAATCCATATTTTTTAATTCTATGAACCCTTATTTCTTTTTTCGAAACCATTATTACTATTATAGAATATATCCGACCTAATACATAATTAAATTGGTTTGCGAGATCCTCTCAAATAATCATTCGGAATATGGAACCATGGTGAAACTTCTAACTCAACTTGAGGCAGTTATATCTTGGATAATGGCTGTCGAGTCTTTGCTATCTTTTTTGTGTTATATTATCATAAAAGGTTAAGGATGTGGAAACTGATTATAGGAGATTCACTTTGCAATGGAAGTCAAGTTTCTTTGCTTGAGTATCAATTTGTTGGTACAAGAATATGTATATTGAAATGTTCCAAGTTCTAACCAGTCATCTTTATGCAGCTGGTGATAAGACTTAAGACAGGAGTGGAAATGAAGGTCTTGACACCCTTGAAACCATTCCCAATGCAGTTCCTGACGTTCTTATTGAACCTCCCATTGAACATCAACTGGCATGGCATACACTTTGGCCAGAGTCGCACAAACTTTATGATGATCATGGGAATGAGCTATTTTCTCTATGTTGTGATCTCATGGGGAAGCTTGTTACTTCATCCTGTAAGGTATAATCAGTTCATCTATTGTTCATAATTATAGAAAATAATTATTCATTTCTATTTAATATTAGTCAACCCAAAAGACAATGTCTTTTGTTTCTTACCCTGCTTGAACAAAAAAACAATAGTTTTATAGATCAAGGGAGGGGCACAAAAGAATCACTTGATCATGTTCTTGGAACCCATATGGTCATGAGTTTGCAACAGGCTCTAGGGATAAGACTGCGAAGATATGGGCTTTGAAAGTCGAATCTTCAGTTAAACAAGCAGCTAACAACTCTGCCACAGTTCAAATCTAGTTTCACTGCTTTATAAACGGGTGGCTCTTGATCCCGAGAGCAATGGGCTCCCTTGAGTTTTGGAGTTTGTCTATCAAAAGAACAGATGATGTTTGCTCAAATGTAGTGTCTTAATCAATTTGTGTGCCATGTTTCCTCAGTCAAGTGTTTGGCATGAAAGCAAACGGAGAAGAGTGAAAAGTGCAGGAAGCTGCAACTTGAATCCTGTGGCACGAACCACTGTGTGAAGTGTGTTTGAGGTAAATGTTCCTGTTATGAAAAGGTATGTATCATTGTATTGCTTGTTCTTGTAGATTATGATCACTTTCAATTTTGCCCCCACAGAAAGTGGCACTTAACTGAAATTGTTTCCTCTTGTATTTGGGCTGCTGATCTGTCTATTCATTTCCATTTCCATTTCTGAAAAACTTTGGAGTAAATAACGAATTATACCGTCCAGTCTCTTCCCTTT

mRNA sequence

ATGGCTTCTGGCGGCGGCGACGAGGTGGAAGTCAATGGAGCGTTCATAGGAGCAGGGTGTAACATAATAGTGAACAACGTTCCTTGGGGAGCCTGTGATTTAGTGGCTTTCGGCGCTCAAAATGCCGACGCTATCGCTATCGCTATCTTCTCCCCTAAGTCTGCACAAATTTTGACGACCTTTTCCGGTCACAAATTTCATGGGCTAGATCCGGCGATTATATTATTTCAGTCGGGCATGACCAGGAGTGGAAATGAAGGTCTTGACACCCTTGAAACCATTCCCAATGCAGTTCCTGACGTTCTTATTGAACCTCCCATTGAACATCAACTGGCATGGCATACACTTTGGCCAGAGTCGCACAAACTTTATGATGATCATGGGAATGAGCTATTTTCTCTATGTTGTGATCTCATGGGGAAGCTTGTTACTTCATCCTGTAAGTCAAGTGTTTGGCATGAAAGCAAACGGAGAAGAGTGAAAAGTGCAGGAAGCTGCAACTTGAATCCTGTGGCACGAACCACTGTGTGAAGTGTGTTTGAGGTAAATGTTCCTGTTATGAAAAGGTATGTATCATTGTATTGCTTGTTCTTGTAGATTATGATCACTTTCAATTTTGCCCCCACAGAAAGTGGCACTTAACTGAAATTGTTTCCTCTTGTATTTGGGCTGCTGATCTGTCTATTCATTTCCATTTCCATTTCTGAAAAACTTTGGAGTAAATAACGAATTATACCGTCCAGTCTCTTCCCTTT

Coding sequence (CDS)

ATGGCTTCTGGCGGCGGCGACGAGGTGGAAGTCAATGGAGCGTTCATAGGAGCAGGGTGTAACATAATAGTGAACAACGTTCCTTGGGGAGCCTGTGATTTAGTGGCTTTCGGCGCTCAAAATGCCGACGCTATCGCTATCGCTATCTTCTCCCCTAAGTCTGCACAAATTTTGACGACCTTTTCCGGTCACAAATTTCATGGGCTAGATCCGGCGATTATATTATTTCAGTCGGGCATGACCAGGAGTGGAAATGAAGGTCTTGACACCCTTGAAACCATTCCCAATGCAGTTCCTGACGTTCTTATTGAACCTCCCATTGAACATCAACTGGCATGGCATACACTTTGGCCAGAGTCGCACAAACTTTATGATGATCATGGGAATGAGCTATTTTCTCTATGTTGTGATCTCATGGGGAAGCTTGTTACTTCATCCTGTAAGTCAAGTGTTTGGCATGAAAGCAAACGGAGAAGAGTGAAAAGTGCAGGAAGCTGCAACTTGAATCCTGTGGCACGAACCACTGTGTGA

Protein sequence

MASGGGDEVEVNGAFIGAGCNIIVNNVPWGACDLVAFGAQNADAIAIAIFSPKSAQILTTFSGHKFHGLDPAIILFQSGMTRSGNEGLDTLETIPNAVPDVLIEPPIEHQLAWHTLWPESHKLYDDHGNELFSLCCDLMGKLVTSSCKSSVWHESKRRRVKSAGSCNLNPVARTTV
Homology
[Close]
BLAST of Cp4.1LG01g13860 vs. Swiss-Prot
Match: ELP2_ARATH (Elongator complex protein 2 OS=Arabidopsis thaliana GN=ELP2 PE=1 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 2.5e-20
Identity = 48/66 (72.73%), Postives = 51/66 (77.27%), Query Frame = 1 

Query: 84  GNEGLDTLETIPNAVPDVLIEPPIEHQLAWHTLWPESHKLYDDHGNELFSLCCDLMGKLV 143
           G EGLDT ET+P A P  L EPPIE QLA+HTLWPESHKLY  HGNELFSLC D  G LV
Sbjct: 555 GGEGLDTFETVPEAAPAELKEPPIEDQLAFHTLWPESHKLY-GHGNELFSLCSDHKGNLV 614

Query: 144 TSSCKS 150
            SSCK+
Sbjct: 615 ASSCKA 619

[Close]
BLAST of Cp4.1LG01g13860 vs. Swiss-Prot
Match: ELP2_DICDI (Probable elongator complex protein 2 OS=Dictyostelium discoideum GN=elp2 PE=3 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 6.4e-08
Identity = 30/69 (43.48%), Postives = 40/69 (57.97%), Query Frame = 1 

Query: 84  GNEGLDT--LETIPNAVPDVLIEPPIEHQLAWHTLWPESHKLYDDHGNELFSLCCDLMGK 143
           G EG+DT   E      P+VL EPP E  L   +LWPE HK Y  HGNE+ ++ C   G 
Sbjct: 610 GGEGMDTGYFEDEIPFNPEVLSEPPFEEHLLQSSLWPEIHKFYG-HGNEIVAVACSADGM 669

Query: 144 LVTSSCKSS 151
            + S+C++S
Sbjct: 670 YLASTCRAS 677

[Close]
BLAST of Cp4.1LG01g13860 vs. Swiss-Prot
Match: ELP2_XENTR (Elongator complex protein 2 OS=Xenopus tropicalis GN=elp2 PE=2 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 1.4e-07
Identity = 37/111 (33.33%), Postives = 54/111 (48.65%), Query Frame = 1 

Query: 66  FHGLDPAIILFQSGMTRSGNEGLDTLETIPNAVPDVLIEPPIEHQLAWHTLWPESHKLYD 125
           FHG     IL QS         +    + PN  P  L EPP E  L  +TLWPE  KLY 
Sbjct: 507 FHGE----ILIQSTQEEGKYNSVSEQYSQPNFQPLNLTEPPTEDHLLQNTLWPEVQKLYG 566

Query: 126 DHGNELFSLCCDLMGKLVTSSCKSS--------VWHESKRRRVKSAGSCNL 169
            HG E+F++ C+    ++ S+CK+S        +W  +  ++++S    NL
Sbjct: 567 -HGYEIFAVACNSAKTVIASACKASKREHAAIILWSTTSWKQLQSLSYHNL 612

[Close]
BLAST of Cp4.1LG01g13860 vs. TrEMBL
Match: A0A0A0KR67_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G610440 PE=4 SV=1)

HSP 1 Score: 121.3 bits (303), Expect = 1.2e-24
Identity = 56/68 (82.35%), Postives = 60/68 (88.24%), Query Frame = 1 

Query: 82  RSGNEGLDTLETIPNAVPDVLIEPPIEHQLAWHTLWPESHKLYDDHGNELFSLCCDLMGK 141
           RSGNEG+DTLETIP+AVP +L EPPIE QLAWHTLWPESHKLY  HGNELFSLCCD  GK
Sbjct: 553 RSGNEGIDTLETIPDAVPVILTEPPIEDQLAWHTLWPESHKLY-GHGNELFSLCCDNKGK 612

Query: 142 LVTSSCKS 150
           LV SSCK+
Sbjct: 613 LVASSCKA 619

[Close]
BLAST of Cp4.1LG01g13860 vs. TrEMBL
Match: A0A103YA92_CYNCS (WD40 repeat-containing protein OS=Cynara cardunculus var. scolymus GN=Ccrd_016283 PE=4 SV=1)

HSP 1 Score: 120.6 bits (301), Expect = 2.0e-24
Identity = 57/83 (68.67%), Postives = 63/83 (75.90%), Query Frame = 1 

Query: 69  LDPAIILFQSGMTRSGNEGLDTLETIPNAVPDVLIEPPIEHQLAWHTLWPESHKLYDDHG 128
           +D  ++       RSG+EG DTLETIP+AVP VL EPPIE QLAWHTLWPESHKLY  HG
Sbjct: 510 VDVQVLASSETTDRSGSEGFDTLETIPDAVPSVLTEPPIEEQLAWHTLWPESHKLY-GHG 569

Query: 129 NELFSLCCDLMGKLVTSSCKSSV 152
           NELFSLCCD  GKLV SSC  S+
Sbjct: 570 NELFSLCCDHGGKLVASSCPISI 591

[Close]
BLAST of Cp4.1LG01g13860 vs. TrEMBL
Match: M1CE81_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400025502 PE=4 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 2.2e-23
Identity = 59/85 (69.41%), Postives = 62/85 (72.94%), Query Frame = 1 

Query: 68  GLDPAIILFQSGMT---RSGNEGLDTLETIPNAVPDVLIEPPIEHQLAWHTLWPESHKLY 127
           GL    I  Q+  T   RS  EG DTLET+P AVP VL EPPIE QLAWHTLWPESHKLY
Sbjct: 403 GLSQKPIYVQAASTPTDRSNTEGFDTLETVPEAVPVVLTEPPIEEQLAWHTLWPESHKLY 462

Query: 128 DDHGNELFSLCCDLMGKLVTSSCKS 150
             HGNELFSLCCD  GKLV SSCK+
Sbjct: 463 -GHGNELFSLCCDHDGKLVASSCKA 486

[Close]
BLAST of Cp4.1LG01g13860 vs. TrEMBL
Match: A0A0V0IUG6_SOLCH (Putative ovule protein OS=Solanum chacoense PE=4 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 2.2e-23
Identity = 59/85 (69.41%), Postives = 62/85 (72.94%), Query Frame = 1 

Query: 68  GLDPAIILFQSGMT---RSGNEGLDTLETIPNAVPDVLIEPPIEHQLAWHTLWPESHKLY 127
           GL    I  Q+  T   RS  EG DTLET+P AVP VL EPPIE QLAWHTLWPESHKLY
Sbjct: 197 GLSQKPIYVQAASTPTDRSNTEGFDTLETVPEAVPVVLTEPPIEEQLAWHTLWPESHKLY 256

Query: 128 DDHGNELFSLCCDLMGKLVTSSCKS 150
             HGNELFSLCCD  GKLV SSCK+
Sbjct: 257 -GHGNELFSLCCDHDGKLVASSCKA 280

[Close]
BLAST of Cp4.1LG01g13860 vs. TrEMBL
Match: M1CE80_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400025502 PE=4 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 2.2e-23
Identity = 59/85 (69.41%), Postives = 62/85 (72.94%), Query Frame = 1 

Query: 68  GLDPAIILFQSGMT---RSGNEGLDTLETIPNAVPDVLIEPPIEHQLAWHTLWPESHKLY 127
           GL    I  Q+  T   RS  EG DTLET+P AVP VL EPPIE QLAWHTLWPESHKLY
Sbjct: 523 GLSQKPIYVQAASTPTDRSNTEGFDTLETVPEAVPVVLTEPPIEEQLAWHTLWPESHKLY 582

Query: 128 DDHGNELFSLCCDLMGKLVTSSCKS 150
             HGNELFSLCCD  GKLV SSCK+
Sbjct: 583 -GHGNELFSLCCDHDGKLVASSCKA 606

[Close]
BLAST of Cp4.1LG01g13860 vs. TAIR10
Match: AT1G49540.2 (AT1G49540.2 elongator protein 2)

HSP 1 Score: 100.1 bits (248), Expect = 1.4e-21
Identity = 48/66 (72.73%), Postives = 51/66 (77.27%), Query Frame = 1 

Query: 84  GNEGLDTLETIPNAVPDVLIEPPIEHQLAWHTLWPESHKLYDDHGNELFSLCCDLMGKLV 143
           G EGLDT ET+P A P  L EPPIE QLA+HTLWPESHKLY  HGNELFSLC D  G LV
Sbjct: 557 GGEGLDTFETVPEAAPAELKEPPIEDQLAFHTLWPESHKLY-GHGNELFSLCSDHKGNLV 616

Query: 144 TSSCKS 150
            SSCK+
Sbjct: 617 ASSCKA 621

[Close]
BLAST of Cp4.1LG01g13860 vs. NCBI nr
Match: gi|778706067|ref|XP_011655793.1| (PREDICTED: elongator complex protein 2 [Cucumis sativus])

HSP 1 Score: 121.3 bits (303), Expect = 1.7e-24
Identity = 56/68 (82.35%), Postives = 60/68 (88.24%), Query Frame = 1 

Query: 82  RSGNEGLDTLETIPNAVPDVLIEPPIEHQLAWHTLWPESHKLYDDHGNELFSLCCDLMGK 141
           RSGNEG+DTLETIP+AVP +L EPPIE QLAWHTLWPESHKLY  HGNELFSLCCD  GK
Sbjct: 553 RSGNEGIDTLETIPDAVPVILTEPPIEDQLAWHTLWPESHKLY-GHGNELFSLCCDNKGK 612

Query: 142 LVTSSCKS 150
           LV SSCK+
Sbjct: 613 LVASSCKA 619

[Close]
BLAST of Cp4.1LG01g13860 vs. NCBI nr
Match: gi|659091615|ref|XP_008446640.1| (PREDICTED: elongator complex protein 2 [Cucumis melo])

HSP 1 Score: 121.3 bits (303), Expect = 1.7e-24
Identity = 56/68 (82.35%), Postives = 60/68 (88.24%), Query Frame = 1 

Query: 82  RSGNEGLDTLETIPNAVPDVLIEPPIEHQLAWHTLWPESHKLYDDHGNELFSLCCDLMGK 141
           RSGNEG+DTLETIP+AVP +L EPPIE QLAWHTLWPESHKLY  HGNELFSLCCD  GK
Sbjct: 555 RSGNEGIDTLETIPDAVPVILTEPPIEDQLAWHTLWPESHKLY-GHGNELFSLCCDNKGK 614

Query: 142 LVTSSCKS 150
           LV SSCK+
Sbjct: 615 LVASSCKA 621

[Close]
BLAST of Cp4.1LG01g13860 vs. NCBI nr
Match: gi|976920679|gb|KVI05393.1| (WD40 repeat-containing protein [Cynara cardunculus var. scolymus])

HSP 1 Score: 120.6 bits (301), Expect = 2.8e-24
Identity = 57/83 (68.67%), Postives = 63/83 (75.90%), Query Frame = 1 

Query: 69  LDPAIILFQSGMTRSGNEGLDTLETIPNAVPDVLIEPPIEHQLAWHTLWPESHKLYDDHG 128
           +D  ++       RSG+EG DTLETIP+AVP VL EPPIE QLAWHTLWPESHKLY  HG
Sbjct: 510 VDVQVLASSETTDRSGSEGFDTLETIPDAVPSVLTEPPIEEQLAWHTLWPESHKLY-GHG 569

Query: 129 NELFSLCCDLMGKLVTSSCKSSV 152
           NELFSLCCD  GKLV SSC  S+
Sbjct: 570 NELFSLCCDHGGKLVASSCPISI 591

[Close]
BLAST of Cp4.1LG01g13860 vs. NCBI nr
Match: gi|460389704|ref|XP_004240490.1| (PREDICTED: elongator complex protein 2 [Solanum lycopersicum])

HSP 1 Score: 117.1 bits (292), Expect = 3.1e-23
Identity = 55/79 (69.62%), Postives = 60/79 (75.95%), Query Frame = 1 

Query: 71  PAIILFQSGMTRSGNEGLDTLETIPNAVPDVLIEPPIEHQLAWHTLWPESHKLYDDHGNE 130
           P  +   + + RS  EG DTLET+P AVP VL EPPIE QLAWHTLWPESHKLY  HGNE
Sbjct: 531 PIYVQASTPIDRSNTEGFDTLETVPEAVPVVLTEPPIEEQLAWHTLWPESHKLY-GHGNE 590

Query: 131 LFSLCCDLMGKLVTSSCKS 150
           LFSLCCD  GKLV SSCK+
Sbjct: 591 LFSLCCDHDGKLVASSCKA 608

[Close]
BLAST of Cp4.1LG01g13860 vs. NCBI nr
Match: gi|970033816|ref|XP_015078212.1| (PREDICTED: elongator complex protein 2 isoform X2 [Solanum pennellii])

HSP 1 Score: 117.1 bits (292), Expect = 3.1e-23
Identity = 55/79 (69.62%), Postives = 60/79 (75.95%), Query Frame = 1 

Query: 71  PAIILFQSGMTRSGNEGLDTLETIPNAVPDVLIEPPIEHQLAWHTLWPESHKLYDDHGNE 130
           P  +   + + RS  EG DTLET+P AVP VL EPPIE QLAWHTLWPESHKLY  HGNE
Sbjct: 531 PIYVQASTPIDRSNTEGFDTLETVPEAVPVVLTEPPIEEQLAWHTLWPESHKLY-GHGNE 590

Query: 131 LFSLCCDLMGKLVTSSCKS 150
           LFSLCCD  GKLV SSCK+
Sbjct: 591 LFSLCCDHDGKLVASSCKA 608

The following BLAST results are available for this feature:
BLAST of Cp4.1LG01g13860 vs. Swiss-Prot
Match NameE-valueIdentityDescription
ELP2_ARATH2.5e-2072.73Elongator complex protein 2 OS=Arabidopsis thaliana GN=ELP2 PE=1 SV=1[more]
ELP2_DICDI6.4e-0843.48Probable elongator complex protein 2 OS=Dictyostelium discoideum GN=elp2 PE=3 SV... [more]
ELP2_XENTR1.4e-0733.33Elongator complex protein 2 OS=Xenopus tropicalis GN=elp2 PE=2 SV=1[more]
BLAST of Cp4.1LG01g13860 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KR67_CUCSA1.2e-2482.35Uncharacterized protein OS=Cucumis sativus GN=Csa_5G610440 PE=4 SV=1[more]
A0A103YA92_CYNCS2.0e-2468.67WD40 repeat-containing protein OS=Cynara cardunculus var. scolymus GN=Ccrd_01628... [more]
M1CE81_SOLTU2.2e-2369.41Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400025502 PE=4 SV=1[more]
A0A0V0IUG6_SOLCH2.2e-2369.41Putative ovule protein OS=Solanum chacoense PE=4 SV=1[more]
M1CE80_SOLTU2.2e-2369.41Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400025502 PE=4 SV=1[more]
BLAST of Cp4.1LG01g13860 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G49540.21.4e-2172.73 elongator protein 2[more]
BLAST of Cp4.1LG01g13860 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778706067|ref|XP_011655793.1|1.7e-2482.35PREDICTED: elongator complex protein 2 [Cucumis sativus][more]
gi|659091615|ref|XP_008446640.1|1.7e-2482.35PREDICTED: elongator complex protein 2 [Cucumis melo][more]
gi|976920679|gb|KVI05393.1|2.8e-2468.67WD40 repeat-containing protein [Cynara cardunculus var. scolymus][more]
gi|460389704|ref|XP_004240490.1|3.1e-2369.62PREDICTED: elongator complex protein 2 [Solanum lycopersicum][more]
gi|970033816|ref|XP_015078212.1|3.1e-2369.62PREDICTED: elongator complex protein 2 isoform X2 [Solanum pennellii][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
molecular_function GO:0005515 protein binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG01g13860.1Cp4.1LG01g13860.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR22847WD40 REPEAT PROTEINcoord: 1..65
score: 1.6
NoneNo IPR availablePANTHERPTHR22847:SF447ELONGATOR COMPLEX PROTEIN 2coord: 1..65
score: 1.6

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG01g13860Cucsa.283290Cucumber (Gy14) v1cgycpeB0750
Cp4.1LG01g13860CmaCh18G009950Cucurbita maxima (Rimu)cmacpeB429
Cp4.1LG01g13860CmaCh04G014870Cucurbita maxima (Rimu)cmacpeB720
Cp4.1LG01g13860CmoCh18G010040Cucurbita moschata (Rifu)cmocpeB392
Cp4.1LG01g13860Cla020421Watermelon (97103) v1cpewmB427
Cp4.1LG01g13860Csa5G610440Cucumber (Chinese Long) v2cpecuB439
Cp4.1LG01g13860MELO3C012277Melon (DHL92) v3.5.1cpemeB363
Cp4.1LG01g13860ClCG05G022460Watermelon (Charleston Gray)cpewcgB388
Cp4.1LG01g13860CSPI05G25570Wild cucumber (PI 183967)cpecpiB439
Cp4.1LG01g13860Lsi04G002220Bottle gourd (USVL1VR-Ls)cpelsiB352
Cp4.1LG01g13860MELO3C012277.2Melon (DHL92) v3.6.1cpemedB423
Cp4.1LG01g13860CsaV3_5G034620Cucumber (Chinese Long) v3cpecucB0543
Cp4.1LG01g13860Bhi07G001070Wax gourdcpewgoB0557
Cp4.1LG01g13860CsGy5G025010Cucumber (Gy14) v2cgybcpeB648
Cp4.1LG01g13860Carg19044Silver-seed gourdcarcpeB1466
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Cp4.1LG01g13860Cp4.1LG09g03190Cucurbita pepo (Zucchini)cpecpeB040
The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG01g13860Cucurbita pepo (Zucchini)cpecpeB205
Cp4.1LG01g13860Cucurbita pepo (Zucchini)cpecpeB345
Cp4.1LG01g13860Cucurbita pepo (Zucchini)cpecpeB399
Cp4.1LG01g13860Cucurbita maxima (Rimu)cmacpeB323
Cp4.1LG01g13860Cucurbita maxima (Rimu)cmacpeB737
Cp4.1LG01g13860Cucurbita moschata (Rifu)cmocpeB115
Cp4.1LG01g13860Cucurbita moschata (Rifu)cmocpeB285
Cp4.1LG01g13860Cucurbita moschata (Rifu)cmocpeB673
Cp4.1LG01g13860Cucurbita moschata (Rifu)cmocpeB691
Cp4.1LG01g13860Wild cucumber (PI 183967)cpecpiB381
Cp4.1LG01g13860Cucumber (Chinese Long) v2cpecuB381
Cp4.1LG01g13860Bottle gourd (USVL1VR-Ls)cpelsiB371
Cp4.1LG01g13860Watermelon (Charleston Gray)cpewcgB401
Cp4.1LG01g13860Watermelon (97103) v1cpewmB470
Cp4.1LG01g13860Melon (DHL92) v3.5.1cpemeB395
Cp4.1LG01g13860Cucumber (Gy14) v2cgybcpeB063
Cp4.1LG01g13860Melon (DHL92) v3.6.1cpemedB458
Cp4.1LG01g13860Silver-seed gourdcarcpeB1177
Cp4.1LG01g13860Cucumber (Chinese Long) v3cpecucB0474
Cp4.1LG01g13860Cucumber (Chinese Long) v3cpecucB0539
Cp4.1LG01g13860Wax gourdcpewgoB0514