Cp4.1LG01g12990 (gene) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG01g12990
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	Cyclin-D1-1
Location	Cp4.1LG01 : 8468168 .. 8472018 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AATAAATAGCGTCGCTATTAAATTGACATCATATATATGCAGACAAAGCGGTGCAAGCTTCCAAGCCCCAACTTCAACCAAAACCACTTTTTCAGTTTTTCTTTACGTCACACCGGCGTTAAGTATTCCGTCCAACTTCTCCTCTCTCTTCTCAGCTACTTTTGAATCTCTCTCATCGGCAAGATGGCAATAGAATGAGGAGTCGGAAGAGGTCATCATGTCCGTATCGATTTCCAACTGCTTCTCTAATTTAATCTGCCCGGAGGATTCCTCCGGCGTCTTGTCCGGCGAGTCGCCGGGGTGTTCTTCCGACTTCGATTCGACGGCCTGCGTTGAGGAATCTATCGCCGTCTTCATCAAGGATGAGCGTCGCTTCGTCCCTGATTACGACTGTTTCTCGCGCTTCCAATCTCCATCGCTGGATGCGGCCGCTAGACTAGACTCTGTTGCATGGATTCTTAAGGTAAGAATTTCTCCTCTGCTTTTCCGATTCGTTTCACAGTCATTTATTACCAAAATGCCACTCTTCACGTGACGAATATTGCGGTTGAATTATCACACCAGAATCCGTCGGCGATCACTGATACTCAGTCAGATCCGAGTCGATCAAATCGGAGTCCGTATCAGTGGCCGTCGACGAATCCATTTGATATATTATGACCATGTAGTACAGTTAACTTTTATATTTACCTCCGTCTCCGTCGCATACGGCGGTTATTTATGCGATTATACCTTTTGCAGGTTCAAGCCTATTACGGTTTTCAGCCTTTGACAGCGTATCTCTCCGTCAACTACTTGGATCGCTTCCTTTGTTCACGCCGTTTGCCGGTGAGATTCTTTAGAGAGAAAATAATTATTTGTGTGAATTATTTTGAAGATTCAAGATGTTCGTGGATGGATGCTAGTGATCGTCATTTTTTTTTGTTACATTTAATGGGAGTAATTATATTTGACTTATTCAAACCATGAAAAGGACTAGACTGTAGCAATTCTGAGCATGAAACGTATTATTTAATATCTTATTTATTTATTTTTTCTGTATTCAGATTAAGACTGCATTAATTTGTTTTCGAAATAAAATATCTAACTATCTAAAAATATGTGAGTGTTTGTGTAAGTTAACTTTTTGGGAATTGGGGAAATAGTTAATCGAATAATAAGTAAATTATGAGTGAAGATCATCGTGCACTTCACTCTGTTAAAGGATTGCTAAAGTTCTGAAAGTATGATTTGATATTCATTATGCCTTTTACAAGCTTTTGTTTCTTCTGTCACGGCACATGCAATGTGCGTGCACAGTGCCGGCAAAGAAACGGATAGGATGAACTAATTTGATATGACAAAATCACCAATGAACTCTCACCTAAAATAGCGGTGGCATTTATTGTTTGCTTATCTCTACTTAATGACGATGTTGATTCATTGGGATATGGAATGATTAGCGCCTAATGGTTGGTTAAATTTTCTATTCTTTGTATTGTTTTCAGCAAACAAATGGGTGGCCATTGCAACTCCTCTCTGTTGCTTGCCTGTCACTGGCTGCTAAAATGGAGGAACCTCTTGTTCCCGCTTTACTAGATCTTCAGGTTGGTTTAATTGGACATATATTATTCCTTCTCTTTGTGGAGAATGGGTAATGTTGGGTTTTTTTTCTTCTTTCTTGGTGTATTATAATGGATTGTTTTCTTTTTCCTTTTCAGGTTGAGGGGGCTAAATATATATTTGAACCCAGAACAATATGCAGGATGGAGTTGTTGGTGCTGAGGGTATTGGATTGGCGGCTGCGTTCAATAACGCCGTTCAATTTCATAGCATTCTTTGCTTGCAAGCTCGACCCATCGGGAGATTTCATCGGGTTTCTTATATCAAGAGCAACAGAAATTATAGTATCGAATATCCGAGGTAAAAAAGAAAACTAAACTGGGCTCTTTTTTAGACATGGATTATAAATATGGGACTTGAAAGTGAAATCAAAGTTGTGTATCTGGTCCACAGAGGTAATCTTTCTGGATAACTGGCCATCGTGTATTGCGGCAGCCGCCTTGCTTTGTGCAGCAAATGAAGTCCCGGGTTTGTCTGTTGTCAATCCAGAACATGCTGAATCATGGTGCAGCGGCCTGAGGAAAGTAAGTGCCAGATTGTGATTATGTTGGGCATGTGTGTTTTATACTAAAAAAATATATCCTCATTCGAATATATTAGCAGGAAAATATCACCGGCTGCTACCGGTTAATGCAAGAGATTGTTCTTGTTAGTAGCCGGAGCAAGTCCCCCAAAATCCTACCCGGCCAGTTTAGAGTGACTGTCCGCACTAGGATGACATCCAGCGACTTATCCTCCTACTCCTCCTCTTCCTCATCTTCGTCATCACCAAACAAAAGGAGAAAATTAAACCAGAGCAGCGTCTGGATAGATGATGACAAAGGTAACACCGAAGAATGAGAGGTAGCCGAACTTTGTCTAAAAGAAAAAAAAAAAAAAAAGTAGAATCCTCAATATTTTTTGGGAGGGTTTAGATAATAAGTTAACATAACTAGAGTGGTGCGTGTTAATTATAGTATGTAGTGTATGAAATCTCAGAGTTCGGGTGAGCTGGGAGATTTCAATAATTTATTTATTTATGATCTTGTTGGTGGGAAATTGCCATTCATTAATGGCTTTGCAGATTCCCAATGGGGGGAAACTAAAGGAAAGGGGTTTGTTTGATTTTGAGGGAAATGGCGGAGTGTTGAATAAGTGGAGGAGTCCACATGGAGTGTGGAACACAAAAGTTTGATTAATTTTCCCATCTCCAACAACTATATTTTGCTCCCCATTGGTTGGGCAGTAAATAAATTGAGTGGTTGTTTATGCACATGCTTTTTGGTGCGTGGCATGCTCTTGGGTGTCAGTGTGTACTGTACGAGTGGACTGCCCGCCCCTTCGGCTGGAGGAAGTGCCTCTTCTTTTTCATTGGACTTAAGCCAATCGGCCTGGCCCTTCTGAGTTCTGTGAGTTTATCTTCTTCCTTTCTACTTCTTTATTTTTCAAAGCCTGCGTTAGATGAAGGGAAAAAATCCCAAGTATACAAAAAGGTCTTTGGGGCCTTTGACTGCTTGTTGTATTTGTTTCAATCAATGTGATTAATTTTCATTCATTTCCCTCTCTCTCTTACTCTGTTCATCGCATGTGATTGACAATCAATATTTTGTAGTTTTGTGAATGGGTTTTTCTTCTCCGCATCATAGTGTTTATGTATTATATGAGAATGAGCTCTCTCAACCAGCTGGCTGGCCCTTAAGATCAACTGTTCTCAATTTTAGGACTAAAAGTGTATATTATCTTAACAACTTATGTGGTGATTGGAAAGTTCAGTAGTTCAAAAAACAGAATTGGGAGGGCAACCAAAAAAAAACACAGTAGAAATTGTCATATAGCCCTTAGATTCCCGACATAACAGGTATTATTGTGCATAACTATGGCCCCTTTACTTATCGATTGCAAAAATCCAGCCAGGCGTTTATCACTTTCTTGTTGATTCCACCACCCAAATTTAGGCACTGTCTTCCCTTCTTGTACCCCTTATCTTCTTTTAATTGTAATTTGTAAGAATACATAGCGACAATTATTACTCAACAATCTTCTTCTGCTGGATGGGTACTTTTAGATTGCACCATATTACATGGTCATCCTTCTAGGACCATCATGTTGGTTACGTATTTGAATAGTTTATTTCGTCTCAATTTAAATACAAAAAATCATCCACCTTTCTTTTTATAGGCTTACTTTGGAGTAGCTTTTCTAGTCCATGATGGGTTTCATTCGTGTATAGACTTGGACGTTTCTACAACTACTTTGCCAATCTTGTCAAG

mRNA sequence

AATAAATAGCGTCGCTATTAAATTGACATCATATATATGCAGACAAAGCGGTGCAAGCTTCCAAGCCCCAACTTCAACCAAAACCACTTTTTCAGTTTTTCTTTACGTCACACCGGCGTTAAGTATTCCGTCCAACTTCTCCTCTCTCTTCTCAGCTACTTTTGAATCTCTCTCATCGGCAAGATGGCAATAGAATGAGGAGTCGGAAGAGGTCATCATGTCCGTATCGATTTCCAACTGCTTCTCTAATTTAATCTGCCCGGAGGATTCCTCCGGCGTCTTGTCCGGCGAGTCGCCGGGGTGTTCTTCCGACTTCGATTCGACGGCCTGCGTTGAGGAATCTATCGCCGTCTTCATCAAGGATGAGCGTCGCTTCGTCCCTGATTACGACTGTTTCTCGCGCTTCCAATCTCCATCGCTGGATGCGGCCGCTAGACTAGACTCTGTTGCATGGATTCTTAAGGTTCAAGCCTATTACGGTTTTCAGCCTTTGACAGCGTATCTCTCCGTCAACTACTTGGATCGCTTCCTTTGTTCACGCCGTTTGCCGCAAACAAATGGGTGGCCATTGCAACTCCTCTCTGTTGCTTGCCTGTCACTGGCTGCTAAAATGGAGGAACCTCTTGTTCCCGCTTTACTAGATCTTCAGGTTGAGGGGGCTAAATATATATTTGAACCCAGAACAATATGCAGGATGGAGTTGTTGGTGCTGAGGGTATTGGATTGGCGGCTGCGTTCAATAACGCCGTTCAATTTCATAGCATTCTTTGCTTGCAAGCTCGACCCATCGGGAGATTTCATCGGGTTTCTTATATCAAGAGCAACAGAAATTATAGTATCGAATATCCGAGAGGTAATCTTTCTGGATAACTGGCCATCGTGTATTGCGGCAGCCGCCTTGCTTTGTGCAGCAAATGAAGTCCCGGGTTTGTCTGTTGTCAATCCAGAACATGCTGAATCATGGTGCAGCGGCCTGAGGAAAGAAAATATCACCGGCTGCTACCGGTTAATGCAAGAGATTGTTCTTGTTAGTAGCCGGAGCAAGTCCCCCAAAATCCTACCCGGCCAGTTTAGAGTGACTGTCCGCACTAGGATGACATCCAGCGACTTATCCTCCTACTCCTCCTCTTCCTCATCTTCGTCATCACCAAACAAAAGGAGAAAATTAAACCAGAGCAGCGTCTGGATAGATGATGACAAAGGTAACACCGAAGAATGAGAGGTAGCCGAACTTTGTCTAAAAGAAAAAAAAAAAAAAAAGTAGAATCCTCAATATTTTTTGGGAGGGTTTAGATAATAAGTTAACATAACTAGAGTGGTGCGTGTTAATTATAGTATGTAGTGTATGAAATCTCAGAGTTCGGGTGAGCTGGGAGATTTCAATAATTTATTTATTTATGATCTTGTTGGTGGGAAATTGCCATTCATTAATGGCTTTGCAGATTCCCAATGGGGGGAAACTAAAGGAAAGGGGTTTGTTTGATTTTGAGGGAAATGGCGGAGTGTTGAATAAGTGGAGGAGTCCACATGGAGTGTGGAACACAAAAGTTTGATTAATTTTCCCATCTCCAACAACTATATTTTGCTCCCCATTGGTTGGGCAGTAAATAAATTGAGTGGTTGTTTATGCACATGCTTTTTGGTGCGTGGCATGCTCTTGGGTGTCAGTGTGTACTGTACGAGTGGACTGCCCGCCCCTTCGGCTGGAGGAAGTGCCTCTTCTTTTTCATTGGACTTAAGCCAATCGGCCTGGCCCTTCTGAGTTCTGTGAGTTTATCTTCTTCCTTTCTACTTCTTTATTTTTCAAAGCCTGCGTTAGATGAAGGGAAAAAATCCCAAGTATACAAAAAGGTCTTTGGGGCCTTTGACTGCTTGTTGTATTTGTTTCAATCAATGTGATTAATTTTCATTCATTTCCCTCTCTCTCTTACTCTGTTCATCGCATGTGATTGACAATCAATATTTTGTAGTTTTGTGAATGGGTTTTTCTTCTCCGCATCATAGTGTTTATGTATTATATGAGAATGAGCTCTCTCAACCAGCTGGCTGGCCCTTAAGATCAACTGTTCTCAATTTTAGGACTAAAAGTGTATATTATCTTAACAACTTATGTGGTGATTGGAAAGTTCAGTAGTTCAAAAAACAGAATTGGGAGGGCAACCAAAAAAAAACACAGTAGAAATTGTCATATAGCCCTTAGATTCCCGACATAACAGGTATTATTGTGCATAACTATGGCCCCTTTACTTATCGATTGCAAAAATCCAGCCAGGCGTTTATCACTTTCTTGTTGATTCCACCACCCAAATTTAGGCACTGTCTTCCCTTCTTGTACCCCTTATCTTCTTTTAATTGTAATTTGTAAGAATACATAGCGACAATTATTACTCAACAATCTTCTTCTGCTGGATGGGTACTTTTAGATTGCACCATATTACATGGTCATCCTTCTAGGACCATCATGTTGGTTACGTATTTGAATAGTTTATTTCGTCTCAATTTAAATACAAAAAATCATCCACCTTTCTTTTTATAGGCTTACTTTGGAGTAGCTTTTCTAGTCCATGATGGGTTTCATTCGTGTATAGACTTGGACGTTTCTACAACTACTTTGCCAATCTTGTCAAG

Coding sequence (CDS)

ATGTCCGTATCGATTTCCAACTGCTTCTCTAATTTAATCTGCCCGGAGGATTCCTCCGGCGTCTTGTCCGGCGAGTCGCCGGGGTGTTCTTCCGACTTCGATTCGACGGCCTGCGTTGAGGAATCTATCGCCGTCTTCATCAAGGATGAGCGTCGCTTCGTCCCTGATTACGACTGTTTCTCGCGCTTCCAATCTCCATCGCTGGATGCGGCCGCTAGACTAGACTCTGTTGCATGGATTCTTAAGGTTCAAGCCTATTACGGTTTTCAGCCTTTGACAGCGTATCTCTCCGTCAACTACTTGGATCGCTTCCTTTGTTCACGCCGTTTGCCGCAAACAAATGGGTGGCCATTGCAACTCCTCTCTGTTGCTTGCCTGTCACTGGCTGCTAAAATGGAGGAACCTCTTGTTCCCGCTTTACTAGATCTTCAGGTTGAGGGGGCTAAATATATATTTGAACCCAGAACAATATGCAGGATGGAGTTGTTGGTGCTGAGGGTATTGGATTGGCGGCTGCGTTCAATAACGCCGTTCAATTTCATAGCATTCTTTGCTTGCAAGCTCGACCCATCGGGAGATTTCATCGGGTTTCTTATATCAAGAGCAACAGAAATTATAGTATCGAATATCCGAGAGGTAATCTTTCTGGATAACTGGCCATCGTGTATTGCGGCAGCCGCCTTGCTTTGTGCAGCAAATGAAGTCCCGGGTTTGTCTGTTGTCAATCCAGAACATGCTGAATCATGGTGCAGCGGCCTGAGGAAAGAAAATATCACCGGCTGCTACCGGTTAATGCAAGAGATTGTTCTTGTTAGTAGCCGGAGCAAGTCCCCCAAAATCCTACCCGGCCAGTTTAGAGTGACTGTCCGCACTAGGATGACATCCAGCGACTTATCCTCCTACTCCTCCTCTTCCTCATCTTCGTCATCACCAAACAAAAGGAGAAAATTAAACCAGAGCAGCGTCTGGATAGATGATGACAAAGGTAACACCGAAGAATGA

Protein sequence

MSVSISNCFSNLICPEDSSGVLSGESPGCSSDFDSTACVEESIAVFIKDERRFVPDYDCFSRFQSPSLDAAARLDSVAWILKVQAYYGFQPLTAYLSVNYLDRFLCSRRLPQTNGWPLQLLSVACLSLAAKMEEPLVPALLDLQVEGAKYIFEPRTICRMELLVLRVLDWRLRSITPFNFIAFFACKLDPSGDFIGFLISRATEIIVSNIREVIFLDNWPSCIAAAALLCAANEVPGLSVVNPEHAESWCSGLRKENITGCYRLMQEIVLVSSRSKSPKILPGQFRVTVRTRMTSSDLSSYSSSSSSSSSPNKRRKLNQSSVWIDDDKGNTEE

Homology

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BLAST of Cp4.1LG01g12990 vs. Swiss-Prot
Match: CCD11_ARATH (Cyclin-D1-1 OS=Arabidopsis thaliana GN=CYCD1-1 PE=1 SV=3)

HSP 1 Score: 369.0 bits (946), Expect = 5.4e-101
Identity = 207/329 (62.92%), Postives = 250/329 (75.99%), Query Frame = 1


Query: 1   MSVSISNCFSNLICPEDSSGVLSGESPGCSSDFDSTACVEESIAVFIKDERRFVPDYDCF 60
           MSVS SN   +L C EDS GV SGES    S  +  +   +SIA FI+DER FVP +D  
Sbjct: 12  MSVSFSNDM-DLFCGEDS-GVFSGESTVDFSSSEVDSWPGDSIACFIEDERHFVPGHDYL 71

Query: 61  SRFQSPSLDAAARLDSVAWILKVQAYYGFQPLTAYLSVNYLDRFLCSRRLPQTNGWPLQL 120
           SRFQ+ SLDA+AR DSVAWILKVQAYY FQPLTAYL+VNY+DRFL +RRLP+T+GWP+QL
Sbjct: 72  SRFQTRSLDASAREDSVAWILKVQAYYNFQPLTAYLAVNYMDRFLYARRLPETSGWPMQL 131

Query: 121 LSVACLSLAAKMEEPLVPALLDLQVEGAKYIFEPRTICRMELLVLRVLDWRLRSITPFNF 180
           L+VACLSLAAKMEE LVP+L D QV G KY+FE +TI RMELLVL VLDWRLRS+TPF+F
Sbjct: 132 LAVACLSLAAKMEEILVPSLFDFQVAGVKYLFEAKTIKRMELLVLSVLDWRLRSVTPFDF 191

Query: 181 IAFFACKLDPSGDFIGFLISRATEIIVSNIREVIFLDNWPSCIAAAALLCAANEVPGL-S 240
           I+FFA K+DPSG F+GF IS ATEII+SNI+E  FL+ WPS IAAAA+LC ANE+P L S
Sbjct: 192 ISFFAYKIDPSGTFLGFFISHATEIILSNIKEASFLEYWPSSIAAAAILCVANELPSLSS 251

Query: 241 VVNP-EHAESWCSGLRKENITGCYRLMQEIVLVSSRSKSPKILPGQFRVTVRTRMTSSDL 300
           VVNP E  E+WC GL KE I  CYRLM+ + + ++R  +PK++  + RV+VR   T +  
Sbjct: 252 VVNPHESPETWCDGLSKEKIVRCYRLMKAMAIENNRLNTPKVI-AKLRVSVRASSTLTRP 311

Query: 301 SSYSSSSSSSSSPNKRRKLNQSSVWIDDD 328
           S    SS SSSSP KRRKL+  S W+ D+
Sbjct: 312 S--DESSFSSSSPCKRRKLSGYS-WVGDE 334

[Close]

BLAST of Cp4.1LG01g12990 vs. Swiss-Prot
Match: CCD21_ORYSJ (Cyclin-D2-1 OS=Oryza sativa subsp. japonica GN=CYCD2-1 PE=3 SV=2)

HSP 1 Score: 255.8 bits (652), Expect = 6.7e-67
Identity = 152/318 (47.80%), Postives = 197/318 (61.95%), Query Frame = 1


Query: 10  SNLICPEDSSGVL---SGESPGCSSDFDSTACV--EE-----SIAVFIKDERRFVPDYDC 69
           S L+C ED+   +   + +   C+++ D    V  EE     SIA  I  E  + P  D 
Sbjct: 9   SYLLCAEDAGAAVFDVAVDISTCTTEDDECCSVGGEELYSAASIAELIGGEAEYSPRSDY 68

Query: 70  FSRFQSPSLDAAARLDSVAWILKVQAYYGFQPLTAYLSVNYLDRFLCSRRLPQTNGWPLQ 129
             R +S S+D AAR +SV+WILKVQ Y GF PLTAYL+VNY+DRFL  R LP+  GW +Q
Sbjct: 69  PDRLRSRSIDPAARAESVSWILKVQEYNGFLPLTAYLAVNYMDRFLSLRHLPEGQGWAMQ 128

Query: 130 LLSVACLSLAAKMEEPLVPALLDLQVEGAKYIFEPRTICRMELLVLRVLDWRLRSITPFN 189
           LL+VACLSLAAKMEE LVP+LLDLQVE ++Y+FEPRTICRME L+L  L+WRLRS+TPF 
Sbjct: 129 LLAVACLSLAAKMEETLVPSLLDLQVECSRYVFEPRTICRMEFLILTALNWRLRSVTPFT 188

Query: 190 FIAFFACKLDPSGDFIGFLISRATEIIVSNIR-EVIFLDNWPSCIAAAALLCAANEVPGL 249
           FI FFACK               +  +V N   ++ FLD+ PS +AAAA+LCA  E P L
Sbjct: 189 FIDFFACK-------------HISNAMVQNANSDIQFLDHCPSSMAAAAVLCATGETPSL 248

Query: 250 SVVNPEHAESWCSGLRKENITGCYRLMQEIVLVSSRSKSPKILPGQFRVTVRTRMTSSDL 309
           + VNPE A +WC GL +E I+ CY+LMQ++V+ + +  +               + S + 
Sbjct: 249 AFVNPELAVNWCIGLAEEGISSCYQLMQQLVIGNVQRSA--------AAAAAVNLFSDEG 302

Query: 310 SSYSSSSSSSSSPNKRRK 317
            SY    SSS  P KRRK
Sbjct: 309 LSY---DSSSPPPPKRRK 302

[Close]

BLAST of Cp4.1LG01g12990 vs. Swiss-Prot
Match: CCD12_ORYSJ (Cyclin-D1-2 OS=Oryza sativa subsp. japonica GN=CYCD1-2 PE=3 SV=2)

HSP 1 Score: 233.8 bits (595), Expect = 2.7e-60
Identity = 153/341 (44.87%), Postives = 199/341 (58.36%), Query Frame = 1


Query: 9   FSNLICPEDSSGV-------LSGESPGCSSDFDSTACV-------------EESIAVFIK 68
           F  L+C E+ +         L G +P  SS   +T                EE   V+  
Sbjct: 21  FEYLLCTEEDAASAGSFFQQLQGPAPAVSSSPSTTTATAPAAAGSCDDGGEEEEEEVWTV 80

Query: 69  D----------ERRFVPDYDCFSRFQSPS-LDAAARLDSVAWILKVQAYYGFQPLTAYLS 128
           D          ER   P  D   R +S    D AAR DSVAWILKV+  YG  P+TAYL+
Sbjct: 81  DVVAELIGGEAERSHSPRADYPGRLRSGRPADLAARADSVAWILKVRELYGMLPVTAYLA 140

Query: 129 VNYLDRFLCSRRLPQTNGWPLQLLSVACLSLAAKMEEPLVPALLDLQVEGAKYIFEPRTI 188
           V+Y+DRFL   RLP  NGW +QLL+V CLSLAAKMEE LVP++LDLQ+E A+YIFE RTI
Sbjct: 141 VSYMDRFLSLHRLPG-NGWAMQLLAVTCLSLAAKMEETLVPSILDLQMEDARYIFEHRTI 200

Query: 189 CRMELLVLRVLDWRLRSITPFNFIAFFACKLDPSGDFIGFLISRATEIIVSNIREVIFLD 248
            RMELLVL  LDWRLRSITPF F+  FA K+DP+G  I  LI +AT++ ++ I +  FLD
Sbjct: 201 FRMELLVLDALDWRLRSITPFTFMYLFADKVDPNGKHIRELIHQATQVTLATIHDTEFLD 260

Query: 249 NWPSCIAAAALLCAANEVPGLSVVNPEHAESW-CSGLRKENITGCYRLMQEIVLVSSRSK 308
           + PS IAAAA+LCA++E+  L  ++     SW   GL +E I  CYRLMQ+++       
Sbjct: 261 HCPSSIAAAAVLCASSEIMQLVSIDHGTLVSWRIIGLDEEAIIRCYRLMQQLI------S 320

Query: 309 SPKILPGQFRVTVRTRMTSSDLSSYSSSSSSSSSPNKRRKL 318
           S  +      +T+ T  T++  +  S    SSS P+KRRK+
Sbjct: 321 SNNVGRESTEITMATTTTTATTAVSSEEVVSSSPPSKRRKM 354

[Close]

BLAST of Cp4.1LG01g12990 vs. Swiss-Prot
Match: CCD11_ORYSJ (Cyclin-D1-1 OS=Oryza sativa subsp. japonica GN=CYCD1-1 PE=3 SV=1)

HSP 1 Score: 221.5 bits (563), Expect = 1.4e-56
Identity = 129/248 (52.02%), Postives = 164/248 (66.13%), Query Frame = 1


Query: 75  DSVAWILKVQAYYGFQPLTAYLSVNYLDRFLCSRRLPQTNGWPLQLLSVACLSLAAKMEE 134
           +SV+WILKV++ +GFQP TAYL+V+Y+DRF+ SR LP  +GW  QLL VACLSLAAKMEE
Sbjct: 127 ESVSWILKVRSVHGFQPATAYLAVSYMDRFMSSRSLPD-HGWASQLLCVACLSLAAKMEE 186

Query: 135 PLVPALLDLQVEGAKYIFEPRTICRMELLVLRVLDWRLRSITPFNFIAFFACKLDPSGDF 194
              P LLDLQ+EG ++IFEPRTI RMEL+VL  LDWRLRS+TPF F+ FFACK+  SG  
Sbjct: 187 SSAPPLLDLQIEGTRFIFEPRTIQRMELIVLVELDWRLRSVTPFAFVDFFACKVGSSGRS 246

Query: 195 IGFLISRATEIIVSNIREVIFLDNWPSCIAAAALLCAANEVPGL----SVVNPEHAESWC 254
              L  RA +II+S I E+ FL++  S +AAAA+L A NE P      S V+ E A SWC
Sbjct: 247 SRILALRACQIILSAIHELEFLNHCASSMAAAAVLFAVNESPAAMSHRSSVSSESAASWC 306

Query: 255 SGLRKENITGCYRLMQEIVLVSSRSKSPKILPGQFRVTVRTRMTSSDLSSYSSSSSSSSS 314
            GL +E I+ CY+L+Q  +                  T R R     + +  SS +SSSS
Sbjct: 307 IGLTEERISSCYQLLQRAL----------------NATARKRKRHPMILAACSSVTSSSS 357

Query: 315 PNKRRKLN 319
            +KRRKL+
Sbjct: 367 RSKRRKLD 357

[Close]

BLAST of Cp4.1LG01g12990 vs. Swiss-Prot
Match: CCD22_ORYSJ (Cyclin-D2-2 OS=Oryza sativa subsp. japonica GN=CYCD2-2 PE=2 SV=1)

HSP 1 Score: 168.7 bits (426), Expect = 1.1e-40
Identity = 130/347 (37.46%), Postives = 177/347 (51.01%), Query Frame = 1


Query: 12  LICPEDSSGVLS--------GESP---GCSSD-------FDSTACV----EESIAVFIKD 71
           L+C EDSS VL         GE     GC          F   A      +E +A+ ++ 
Sbjct: 12  LLCAEDSSSVLGLGGFGGGGGEVAAELGCGGGGGFDFFGFGGGAVFPIDSDEFVALLVEK 71

Query: 72  ERRFVPDYDCFSRFQSPSLDAAARLDSVAWILKVQAYYGFQPLTAYLSVNYLDRFLCSRR 131
           E    P      + +   L+ + R D++ WI KV +YY F PL+ YL+VNYLDRFL S  
Sbjct: 72  EMDHQPQRGYLEKLELGGLECSWRKDAIDWICKVHSYYNFGPLSLYLAVNYLDRFLSSFN 131

Query: 132 LPQTNGWPLQLLSVACLSLAAKMEEPLVPALLDLQVEGAKYIFEPRTICRMELLVLRVLD 191
           LP    W  QLLSV+CLSLA KMEE +VP  +DLQV  A+Y+FE R I RMEL+V++ L 
Sbjct: 132 LPHDESWMQQLLSVSCLSLATKMEETVVPLPMDLQVFDAEYVFEARHIKRMELIVMKTLK 191

Query: 192 WRLRSITPFNFIAFFACKLDPSGDFIGFLISRATEIIVSNIREVIFLDNWPSCIAAAALL 251
           WRL+++TPF+FI +F  K +        L S  +++ V  +++  FL   PS IAAA +L
Sbjct: 192 WRLQAVTPFSFIGYFLDKFNEGKPPSYTLASWCSDLTVGTLKDSRFLSFRPSEIAAAVVL 251

Query: 252 CAANEVPGLSVVNPEHAESWCSGLRKENITGCYRLMQEIVLV-----SSRSKSPKILP-- 311
               E   L V N    ES    + KE +  CY LM E  LV     S+ S S    P  
Sbjct: 252 AVLAENQFL-VFNSALGESEIP-VNKEMVMRCYELMVEKALVKKIRNSNASSSVPHSPIT 311

Query: 312 ------GQFRVTVRTRMTSSDLSSYSSSSSSSSSP-NKRRKLNQSSV 323
                   FR    T  +S   S+    +S  S+P +KRR+LN + +
Sbjct: 312 VLDAACFSFRSDDTTLGSSQSNSNNKDYNSQDSAPASKRRRLNTTPI 356

[Close]

BLAST of Cp4.1LG01g12990 vs. TrEMBL
Match: A0A0A0KQB6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G603320 PE=3 SV=1)

HSP 1 Score: 577.0 bits (1486), Expect = 1.5e-161
Identity = 296/335 (88.36%), Postives = 313/335 (93.43%), Query Frame = 1


Query: 1   MSVSISNCFSNLICPEDSSGVLSGESPGCSSDFDSTACVEESIAVFIKDERRFVPDYDCF 60
           MSVSISNCFSNL+C EDSSGV SGESPGCSSD +S ACVEESI+VFIK+ER FVPDYDCF
Sbjct: 1   MSVSISNCFSNLLCQEDSSGVFSGESPGCSSDLESPACVEESISVFIKNERHFVPDYDCF 60

Query: 61  SRFQSPSLDAAARLDSVAWILKVQAYYGFQPLTAYLSVNYLDRFLCSRRLPQTNGWPLQL 120
           SRFQSPSLDAAARLDS+AWILKVQAYYGFQPLTAYLSVNYLDRFLCSRRLPQ+NGWPLQL
Sbjct: 61  SRFQSPSLDAAARLDSIAWILKVQAYYGFQPLTAYLSVNYLDRFLCSRRLPQSNGWPLQL 120

Query: 121 LSVACLSLAAKMEEPLVPALLDLQVEGAKYIFEPRTICRMELLVLRVLDWRLRSITPFNF 180
           LSVACLSLAAKMEEPLVPALLDLQVEGAKYIFEPRTICRMELLVLRVLDWRLRS+TPFNF
Sbjct: 121 LSVACLSLAAKMEEPLVPALLDLQVEGAKYIFEPRTICRMELLVLRVLDWRLRSVTPFNF 180

Query: 181 IAFFACKLDPSGDFIGFLISRATEIIVSNIREVIFLDNWPSCIAAAALLCAANEVPGLSV 240
           IAFFA KLDPSGDFI FLISRATEII+S+IREVIFL+ WPSCIAAAALLCAANEV  LSV
Sbjct: 181 IAFFAYKLDPSGDFIEFLISRATEIILSHIREVIFLEYWPSCIAAAALLCAANEVQSLSV 240

Query: 241 VNPEHAESWCSGLRKENITGCYRLMQEIVLVSSRSKSPKILPGQFRVTVRTRMTSSDLSS 300
           VNPEHAESWC+GLRKENI GCYRLMQEIVL ++R KSPKILP Q+RVTVRTRM SSDLSS
Sbjct: 241 VNPEHAESWCNGLRKENIMGCYRLMQEIVLDNTRRKSPKILP-QYRVTVRTRMRSSDLSS 300

Query: 301 --YSSSSSSSSSPNKRRKLNQSSVWIDDDKGNTEE 334
              SSSSSSSSSPNKRRKLNQ+ +W+ DDKGN  E
Sbjct: 301 SYSSSSSSSSSSPNKRRKLNQTHLWVHDDKGNNTE 334

[Close]

BLAST of Cp4.1LG01g12990 vs. TrEMBL
Match: M5XCT0_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa008337mg PE=3 SV=1)

HSP 1 Score: 464.2 bits (1193), Expect = 1.4e-127
Identity = 246/336 (73.21%), Postives = 280/336 (83.33%), Query Frame = 1


Query: 2   SVSISNCFSNLICPEDSSGVLSGESPGCSSDFDSTACVEESIAVFIKDERRFVPDYDCFS 61
           SV  S+CFS+L+C ED SG+LSGESP CSSD +S AC EESIA FI+DER +VP +D  S
Sbjct: 3   SVWSSDCFSDLLCCEDYSGILSGESPECSSDLESPACSEESIAGFIEDERNYVPGFDYLS 62

Query: 62  RFQSP-SLDAAARLDSVAWILKVQAYYGFQPLTAYLSVNYLDRFLCSRRLPQTNGWPLQL 121
           RF S  SLD +AR DSVAWILKVQ+YYGF PLTAYLSVNYLDRFL SRRLPQ NGWP+QL
Sbjct: 63  RFNSDHSLDISARADSVAWILKVQSYYGFHPLTAYLSVNYLDRFLYSRRLPQANGWPMQL 122

Query: 122 LSVACLSLAAKMEEPLVPALLDLQVEGAKYIFEPRTICRMELLVLRVLDWRLRSITPFNF 181
           LSVACLSLAAKMEEPLVP+LLDLQVEG ++IFEPRTI RMELLVL VLDWRLRSITPF+F
Sbjct: 123 LSVACLSLAAKMEEPLVPSLLDLQVEGTQFIFEPRTIRRMELLVLGVLDWRLRSITPFSF 182

Query: 182 IAFFACKLDPSGDFIGFLISRATEIIVSNIREVIFLDNWPSCIAAAALLCAANEVPGLSV 241
           +AFFACKLDP+  FIGFL+SRATEII+SNI+E  FL+ WPSCIAAAA+L AANE+P LS+
Sbjct: 183 VAFFACKLDPAATFIGFLVSRATEIILSNIKEASFLEYWPSCIAAAAILSAANEIPNLSL 242

Query: 242 VNPEHAESWCSGLRKENITGCYRLMQEIVLVSS--RSKSPKILPGQFRVTVRTRMTSSDL 301
            NPEHAESWC GL KE I GCYRLMQE+V+ +S  +  SP +LP Q RVTVR R+ SS  
Sbjct: 243 ENPEHAESWCGGLSKEKIIGCYRLMQEVVVENSGIKKSSPDVLP-QLRVTVRGRVRSSSE 302

Query: 302 SSYSSSSSSSSSP--NKRRKLNQSSVWIDDDKGNTE 333
           SS SS S SSSSP   KRRKLN + +W+DDDKGN+E
Sbjct: 303 SSSSSVSLSSSSPMSYKRRKLN-NCLWVDDDKGNSE 336

[Close]

BLAST of Cp4.1LG01g12990 vs. TrEMBL
Match: A0A067JBV1_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21777 PE=3 SV=1)

HSP 1 Score: 457.6 bits (1176), Expect = 1.3e-125
Identity = 241/333 (72.37%), Postives = 277/333 (83.18%), Query Frame = 1


Query: 1   MSVSISNCFSNLICPEDSSGVLSGESPGCSSDFDSTACVEESIAVFIKDERRFVPDYDCF 60
           MS+  S+CF++L+C EDSS + S ESP CSSD +S A +EESIA FI+DER FVP +D  
Sbjct: 1   MSLPCSDCFTDLLCSEDSSEIFSAESPECSSDLESPAFIEESIASFIEDERNFVPGFDYL 60

Query: 61  SRFQSPSLDAAARLDSVAWILKVQAYYGFQPLTAYLSVNYLDRFLCSRRLPQTNGWPLQL 120
           SRFQS SLDA+AR +SVAWILKVQAYY FQPLTAYLSVNYLDRFL SR LPQT GWP+QL
Sbjct: 61  SRFQSRSLDASAREESVAWILKVQAYYSFQPLTAYLSVNYLDRFLYSRPLPQTKGWPMQL 120

Query: 121 LSVACLSLAAKMEEPLVPALLDLQVEGAKYIFEPRTICRMELLVLRVLDWRLRSITPFNF 180
           LSVACLSLAAKMEE LVP+LLDLQVEGAKYIFEPRTI RMELLVL VLDWRLRS+TPF+F
Sbjct: 121 LSVACLSLAAKMEEALVPSLLDLQVEGAKYIFEPRTIRRMELLVLSVLDWRLRSVTPFSF 180

Query: 181 IAFFACKLDPSGDFIGFLISRATEIIVSNIREVIFLDNWPSCIAAAALLCAANEVPGLSV 240
           + FFACKLD S  +IGFLISRA EII+SN++E  FL+ WPS IAAAA+LCAANE+P LS+
Sbjct: 181 LDFFACKLDSSSTYIGFLISRAKEIILSNMQEASFLEYWPSSIAAAAILCAANEIPKLSL 240

Query: 241 VNPEHAESWCSGLRKENITGCYRLMQEIVLVSSRSKSPKILPGQFRVTVRTRMTSSDLSS 300
           VNPE AESWC GL KE I  CY+LMQ++VL +SR K PK+LP   RVT+R RM SSD SS
Sbjct: 241 VNPELAESWCDGLSKEKIISCYQLMQDLVLDNSRRKPPKVLP-LLRVTIRARMRSSDSSS 300

Query: 301 Y-SSSSSSSSSPNKRRKLNQSSVWIDDDKGNTE 333
             +SSSSSS S  KRRKLN + +W+DDDKGN+E
Sbjct: 301 SPTSSSSSSPSSYKRRKLN-NCLWVDDDKGNSE 331

[Close]

BLAST of Cp4.1LG01g12990 vs. TrEMBL
Match: A0A0M4AN07_POPCN (Cyclin delta-1 family protein OS=Populus canescens GN=CycD1;2 PE=2 SV=1)

HSP 1 Score: 456.8 bits (1174), Expect = 2.2e-125
Identity = 243/331 (73.41%), Postives = 274/331 (82.78%), Query Frame = 1


Query: 3   VSISNCFSNLICPEDSSGVLSGESPGCSSDFDSTACVEES-IAVFIKDERRFVPDYDCFS 62
           +S S+C S+L+C EDSS V SGESP CSSD +S   VEES IA FI+DER FVP YD FS
Sbjct: 1   MSYSDCLSDLLCGEDSSDVFSGESPECSSDLESHDFVEESSIASFIEDERNFVPGYDYFS 60

Query: 63  RFQSPSLDAAARLDSVAWILKVQAYYGFQPLTAYLSVNYLDRFLCSRRLPQTNGWPLQLL 122
           RFQS SLDA+AR  SVAWILKVQA YGFQPLTAYL+VNYLDRFL SRRLPQT+GWPLQLL
Sbjct: 61  RFQSQSLDASAREQSVAWILKVQACYGFQPLTAYLAVNYLDRFLYSRRLPQTDGWPLQLL 120

Query: 123 SVACLSLAAKMEEPLVPALLDLQVEGAKYIFEPRTICRMELLVLRVLDWRLRSITPFNFI 182
           SVACLSLAAKMEEPLVP+LLDLQVEGAKYIFEPRTI RMELLVL VLDWRLRSITPF+F 
Sbjct: 121 SVACLSLAAKMEEPLVPSLLDLQVEGAKYIFEPRTIRRMELLVLGVLDWRLRSITPFSFT 180

Query: 183 AFFACKLDPSGDFIGFLISRATEIIVSNIREVIFLDNWPSCIAAAALLCAANEVPGLSVV 242
            FFACKLDP+G + GFLISRATEII+SNI+E  FL+  PS IAAAA+LCAAN++P LS+V
Sbjct: 181 GFFACKLDPAGAYTGFLISRATEIILSNIKEASFLEYRPSSIAAAAILCAANDIPNLSLV 240

Query: 243 NPEHAESWCSGLRKENITGCYRLMQEIVLVSSRSKSPKILPGQFRVTVRTRMTSSDLSSY 302
           NPEHAESWC GL K+ I  CYRLMQ++VL  SR KS K+L  + RVT+R RM S      
Sbjct: 241 NPEHAESWCDGLSKDKIISCYRLMQDLVLDDSRRKSTKVLLPRLRVTIRARMRS---GGS 300

Query: 303 SSSSSSSSSPNKRRKLNQSSVWIDDDKGNTE 333
            SSSSSSSS  K+RKLN + +W+DDDKGN+E
Sbjct: 301 DSSSSSSSSSYKKRKLN-NCLWVDDDKGNSE 327

[Close]

BLAST of Cp4.1LG01g12990 vs. TrEMBL
Match: G9BZU9_POPCA (D1-type cyclin OS=Populus canadensis GN=CYCD1;1 PE=2 SV=1)

HSP 1 Score: 456.1 bits (1172), Expect = 3.8e-125
Identity = 243/331 (73.41%), Postives = 274/331 (82.78%), Query Frame = 1


Query: 3   VSISNCFSNLICPEDSSGVLSGESPGCSSDFDSTACVEES-IAVFIKDERRFVPDYDCFS 62
           +S S+C S+L+C EDSS + SGESP CSSD +S   VEES IA FI+DER FVP YD FS
Sbjct: 1   MSYSDCLSDLLCGEDSSDIFSGESPECSSDLESHDFVEESSIAGFIEDERNFVPGYDYFS 60

Query: 63  RFQSPSLDAAARLDSVAWILKVQAYYGFQPLTAYLSVNYLDRFLCSRRLPQTNGWPLQLL 122
           RFQS SLDA+AR  SVAWILKVQA YGFQPLTAYLSVNYLDRFL SRRL QT+GWPLQLL
Sbjct: 61  RFQSQSLDASAREQSVAWILKVQACYGFQPLTAYLSVNYLDRFLYSRRLQQTDGWPLQLL 120

Query: 123 SVACLSLAAKMEEPLVPALLDLQVEGAKYIFEPRTICRMELLVLRVLDWRLRSITPFNFI 182
           SVACLSLAAKMEEPLVP+LLDLQVEGAKYIFEPRTI RMELLVL VLDWRLRSITPF+F 
Sbjct: 121 SVACLSLAAKMEEPLVPSLLDLQVEGAKYIFEPRTIRRMELLVLGVLDWRLRSITPFSFT 180

Query: 183 AFFACKLDPSGDFIGFLISRATEIIVSNIREVIFLDNWPSCIAAAALLCAANEVPGLSVV 242
            FFACKLDP+G + GFLISRATEII+SNI+E  FL+  PS IAAAA+LCAAN++P LS+V
Sbjct: 181 GFFACKLDPAGAYTGFLISRATEIILSNIKEASFLEYRPSSIAAAAILCAANDIPNLSLV 240

Query: 243 NPEHAESWCSGLRKENITGCYRLMQEIVLVSSRSKSPKILPGQFRVTVRTRMTSSDLSSY 302
           NPEHAESWC GL K+ I  CYRLMQ++VL  SR KS K+L  + RVT+R RM S   S  
Sbjct: 241 NPEHAESWCDGLSKDKIVSCYRLMQDLVLDDSRRKSTKVLLPRLRVTIRARMRS---SGS 300

Query: 303 SSSSSSSSSPNKRRKLNQSSVWIDDDKGNTE 333
            SSSSSSSS  K+RKLN + +W+DDDKGN+E
Sbjct: 301 DSSSSSSSSSYKKRKLN-NCLWVDDDKGNSE 327

[Close]

BLAST of Cp4.1LG01g12990 vs. TAIR10
Match: AT1G70210.1 (AT1G70210.1 CYCLIN D1;1)

HSP 1 Score: 369.0 bits (946), Expect = 3.1e-102
Identity = 207/329 (62.92%), Postives = 250/329 (75.99%), Query Frame = 1


Query: 1   MSVSISNCFSNLICPEDSSGVLSGESPGCSSDFDSTACVEESIAVFIKDERRFVPDYDCF 60
           MSVS SN   +L C EDS GV SGES    S  +  +   +SIA FI+DER FVP +D  
Sbjct: 12  MSVSFSNDM-DLFCGEDS-GVFSGESTVDFSSSEVDSWPGDSIACFIEDERHFVPGHDYL 71

Query: 61  SRFQSPSLDAAARLDSVAWILKVQAYYGFQPLTAYLSVNYLDRFLCSRRLPQTNGWPLQL 120
           SRFQ+ SLDA+AR DSVAWILKVQAYY FQPLTAYL+VNY+DRFL +RRLP+T+GWP+QL
Sbjct: 72  SRFQTRSLDASAREDSVAWILKVQAYYNFQPLTAYLAVNYMDRFLYARRLPETSGWPMQL 131

Query: 121 LSVACLSLAAKMEEPLVPALLDLQVEGAKYIFEPRTICRMELLVLRVLDWRLRSITPFNF 180
           L+VACLSLAAKMEE LVP+L D QV G KY+FE +TI RMELLVL VLDWRLRS+TPF+F
Sbjct: 132 LAVACLSLAAKMEEILVPSLFDFQVAGVKYLFEAKTIKRMELLVLSVLDWRLRSVTPFDF 191

Query: 181 IAFFACKLDPSGDFIGFLISRATEIIVSNIREVIFLDNWPSCIAAAALLCAANEVPGL-S 240
           I+FFA K+DPSG F+GF IS ATEII+SNI+E  FL+ WPS IAAAA+LC ANE+P L S
Sbjct: 192 ISFFAYKIDPSGTFLGFFISHATEIILSNIKEASFLEYWPSSIAAAAILCVANELPSLSS 251

Query: 241 VVNP-EHAESWCSGLRKENITGCYRLMQEIVLVSSRSKSPKILPGQFRVTVRTRMTSSDL 300
           VVNP E  E+WC GL KE I  CYRLM+ + + ++R  +PK++  + RV+VR   T +  
Sbjct: 252 VVNPHESPETWCDGLSKEKIVRCYRLMKAMAIENNRLNTPKVI-AKLRVSVRASSTLTRP 311

Query: 301 SSYSSSSSSSSSPNKRRKLNQSSVWIDDD 328
           S    SS SSSSP KRRKL+  S W+ D+
Sbjct: 312 S--DESSFSSSSPCKRRKLSGYS-WVGDE 334

[Close]

BLAST of Cp4.1LG01g12990 vs. TAIR10
Match: AT2G22490.2 (AT2G22490.2 Cyclin D2;1)

HSP 1 Score: 161.4 bits (407), Expect = 9.7e-40
Identity = 111/301 (36.88%), Postives = 160/301 (53.16%), Query Frame = 1


Query: 35  STACVEESIAVFIKDERRFVPDYDCFSRFQSPSLDAAARLDSVAWILKVQAYYGFQPLTA 94
           S++  E+ I   +  E  F P  D   R  S  LD + R  ++ WILKV A+Y F  L  
Sbjct: 59  SSSLSEDRIKEMLVREIEFCPGTDYVKRLLSGDLDLSVRNQALDWILKVCAHYHFGHLCI 118

Query: 95  YLSVNYLDRFLCSRRLPQTNGWPLQLLSVACLSLAAKMEEPLVPALLDLQVEGAKYIFEP 154
            LS+NYLDRFL S  LP+   W  QLL+V+CLSLA+KMEE  VP ++DLQVE  K++FE 
Sbjct: 119 CLSMNYLDRFLTSYELPKDKDWAAQLLAVSCLSLASKMEETDVPHIVDLQVEDPKFVFEA 178

Query: 155 RTICRMELLVLRVLDWRLRSITPFNFIAFFACKLDPSGDFIGFLISRATEIIVSNIREVI 214
           +TI RMELLV+  L+WRL+++TPF+FI +F  K+  SG     LI R++  I++  + + 
Sbjct: 179 KTIKRMELLVVTTLNWRLQALTPFSFIDYFVDKI--SGHVSENLIYRSSRFILNTTKAIE 238

Query: 215 FLDNWPSCIAAAALLCAANEVPGLSVVNPEHAESWCSGLRKENITGCYRLMQEIVLVSSR 274
           FLD  PS IAAAA +  +       +   +   S     ++E +  C  LM+ +      
Sbjct: 239 FLDFRPSEIAAAAAVSVSISGETECIDEEKALSSLIYVKQQERVKRCLNLMRSLT-GEEN 298

Query: 275 SKSPKILPGQFRVTVRT--------------RMTSSDLSSYSSSSSSSSSPNKRRKLNQS 322
            +   +   Q RV VR                  S + +  S ++SS SSP+     N S
Sbjct: 299 VRGTSLSQEQARVAVRAVPASPVGVLEATCLSYRSEERTVESCTNSSQSSPDNNNNNNNS 356

[Close]

BLAST of Cp4.1LG01g12990 vs. TAIR10
Match: AT5G65420.3 (AT5G65420.3 CYCLIN D4;1)

HSP 1 Score: 150.6 bits (379), Expect = 1.7e-36
Identity = 102/270 (37.78%), Postives = 149/270 (55.19%), Query Frame = 1


Query: 11  NLICPE---DSSGVLSGESP---GCSSDFDSTACVEESIAVFIKDERRFVPDYDCFSRFQ 70
           +L+C E   D  G++  E+P          S +  EE I   ++ E++ +P  D   R +
Sbjct: 9   SLLCTESNVDDEGMIVDETPIEISIPQMGFSQSESEEIIMEMVEKEKQHLPSDDYIKRLR 68

Query: 71  SPSLDA-AARLDSVAWILKVQAY----------YGFQPLTAYLSVNYLDRFLCSRRLPQT 130
           S  LD    R D++ WI K++            + F PL   L++NYLDRFL    LP  
Sbjct: 69  SGDLDLNVGRRDALNWIWKIRGLCRTDREACEVHQFGPLCFCLAMNYLDRFLSVHDLPSG 128

Query: 131 NGWPLQLLSVACLSLAAKMEEPLVPALLDLQVEGAKYIFEPRTICRMELLVLRVLDWRLR 190
            GW LQLL+VACLSLAAK+EE  VP L+DLQV   +++FE +++ RMELLVL  L WRLR
Sbjct: 129 KGWILQLLAVACLSLAAKIEETEVPMLIDLQVGDPQFVFEAKSVQRMELLVLNKLKWRLR 188

Query: 191 SITPFNFIAFF-----ACKLDPSGDFIGFLISRATEIIVSNIREVIFLDNWPSCIAAAAL 250
           +ITP ++I +F      C  +PS      LISR+ ++I S  + + FL+  PS +AAA  
Sbjct: 189 AITPCSYIRYFLRKMSKCDQEPSNT----LISRSLQVIASTTKGIDFLEFRPSEVAAAVA 248

Query: 251 LCAANEVPGLSVVNPEHAESWCSGLRKENI 259
           L  + E+  +   N   +  + S L+KE +
Sbjct: 249 LSVSGELQRVHFDNSSFSPLF-SLLQKERV 273

[Close]

BLAST of Cp4.1LG01g12990 vs. TAIR10
Match: AT4G34160.1 (AT4G34160.1 CYCLIN D3;1)

HSP 1 Score: 147.1 bits (370), Expect = 1.9e-35
Identity = 98/297 (33.00%), Postives = 156/297 (52.53%), Query Frame = 1


Query: 16  EDSSGVLSGESPGCSSDFDSTACVEESIAVFIKDERRFVPDYDCFSRFQSPSLDAAARLD 75
           E++S + S  SP      D     E+ + +F K+E + +   D           +  R +
Sbjct: 37  EENSSLSSSSSPFVVLQQDLFWEDEDLVTLFSKEEEQGLSCLDDVYL-------STDRKE 96

Query: 76  SVAWILKVQAYYGFQPLTAYLSVNYLDRFLCSRRLPQTNGWPLQLLSVACLSLAAKMEEP 135
           +V WIL+V A+YGF  L A L++ YLD+F+CS  L +   W LQL+SVACLSLAAK+EE 
Sbjct: 97  AVGWILRVNAHYGFSTLAAVLAITYLDKFICSYSLQRDKPWMLQLVSVACLSLAAKVEET 156

Query: 136 LVPALLDLQVEGAKYIFEPRTICRMELLVLRVLDWRLRSITPFNFIAFFACKLDPSGDFI 195
            VP LLD QVE  KY+FE +TI RMELL+L  L+W++  ITP +F+     +L    +  
Sbjct: 157 QVPLLLDFQVEETKYVFEAKTIQRMELLILSTLEWKMHLITPISFVDHIIRRLGLKNNAH 216

Query: 196 GFLISRATEIIVSNIREVIFLDNWPSCIAAAALLCAANEVPGLSVVNPEHAESWCSGLRK 255
              +++   +++S I +  F+   PS +AAA ++    +V     ++ +        L K
Sbjct: 217 WDFLNKCHRLLLSVISDSRFVGYLPSVVAAATMMRIIEQVDPFDPLSYQTNLLGVLNLTK 276

Query: 256 ENITGCYRLMQEIVLVSSRSKSPKILPGQFRVTVRTRMTSSDLSSYSSSSSSSSSPN 313
           E +  CY L+ ++ +               R+ ++ ++ SS       SSSS +SP+
Sbjct: 277 EKVKTCYDLILQLPV--------------DRIGLQIQIQSSKKRKSHDSSSSLNSPS 312

[Close]

BLAST of Cp4.1LG01g12990 vs. TAIR10
Match: AT5G10440.1 (AT5G10440.1 cyclin d4;2)

HSP 1 Score: 142.9 bits (359), Expect = 3.6e-34
Identity = 97/271 (35.79%), Postives = 144/271 (53.14%), Query Frame = 1


Query: 40  EESIAVFIKDERRFVPDYDCFSRFQSPSLDAAARLDSVAWILKVQAYYGFQPLTAYLSVN 99
           EE +   I+ ER+  P  D   R ++  LD   R+ ++ WI K      F PL   L++N
Sbjct: 36  EEIVREMIEKERQHSPRDDYLKRLRNGDLDFNVRIQALGWIWKACEELQFGPLCICLAMN 95

Query: 100 YLDRFLCSRRLPQTNGWPLQLLSVACLSLAAKMEEPLVPALLDLQVEGAKYIFEPRTICR 159
           YLDRFL    LP    W +QLL+VACLSLAAK+EE  VP L+ LQV    ++FE +++ R
Sbjct: 96  YLDRFLSVHDLPSGKAWTVQLLAVACLSLAAKIEETNVPELMQLQVGAPMFVFEAKSVQR 155

Query: 160 MELLVLRVLDWRLRSITPFNFIAFFACKLDP-SGDFIGFLISRATEIIVSNIREVIFLDN 219
           MELLVL VL WRLR++TP +++ +F  K++    +    L++R+ ++I S  + + FL+ 
Sbjct: 156 MELLVLNVLRWRLRAVTPCSYVRYFLSKINGYDQEPHSRLVTRSLQVIASTTKGIDFLEF 215

Query: 220 WPSCIAAAALLCAANEVPGLSVVNPEHAESWCSGLRKENITGCYRLMQEIVLVSSRSKSP 279
             S IAAA  L  + E       +     S  S L KE +     +++        S S 
Sbjct: 216 RASEIAAAVALSVSGE-----HFDKFSFSSSFSSLEKERVKKIGEMIER-----DGSSSS 275

Query: 280 KILPGQFRVTVRTRMTSSDLSSYSSSSSSSS 310
              P    +  ++R  S  LS+ S SSS +S
Sbjct: 276 SQTPNNTVLQFKSRRYSHSLSTASVSSSLTS 296

[Close]

BLAST of Cp4.1LG01g12990 vs. NCBI nr
Match: gi|449435382|ref|XP_004135474.1| (PREDICTED: cyclin-D1-1 [Cucumis sativus])

HSP 1 Score: 577.0 bits (1486), Expect = 2.1e-161
Identity = 296/335 (88.36%), Postives = 313/335 (93.43%), Query Frame = 1


Query: 1   MSVSISNCFSNLICPEDSSGVLSGESPGCSSDFDSTACVEESIAVFIKDERRFVPDYDCF 60
           MSVSISNCFSNL+C EDSSGV SGESPGCSSD +S ACVEESI+VFIK+ER FVPDYDCF
Sbjct: 1   MSVSISNCFSNLLCQEDSSGVFSGESPGCSSDLESPACVEESISVFIKNERHFVPDYDCF 60

Query: 61  SRFQSPSLDAAARLDSVAWILKVQAYYGFQPLTAYLSVNYLDRFLCSRRLPQTNGWPLQL 120
           SRFQSPSLDAAARLDS+AWILKVQAYYGFQPLTAYLSVNYLDRFLCSRRLPQ+NGWPLQL
Sbjct: 61  SRFQSPSLDAAARLDSIAWILKVQAYYGFQPLTAYLSVNYLDRFLCSRRLPQSNGWPLQL 120

Query: 121 LSVACLSLAAKMEEPLVPALLDLQVEGAKYIFEPRTICRMELLVLRVLDWRLRSITPFNF 180
           LSVACLSLAAKMEEPLVPALLDLQVEGAKYIFEPRTICRMELLVLRVLDWRLRS+TPFNF
Sbjct: 121 LSVACLSLAAKMEEPLVPALLDLQVEGAKYIFEPRTICRMELLVLRVLDWRLRSVTPFNF 180

Query: 181 IAFFACKLDPSGDFIGFLISRATEIIVSNIREVIFLDNWPSCIAAAALLCAANEVPGLSV 240
           IAFFA KLDPSGDFI FLISRATEII+S+IREVIFL+ WPSCIAAAALLCAANEV  LSV
Sbjct: 181 IAFFAYKLDPSGDFIEFLISRATEIILSHIREVIFLEYWPSCIAAAALLCAANEVQSLSV 240

Query: 241 VNPEHAESWCSGLRKENITGCYRLMQEIVLVSSRSKSPKILPGQFRVTVRTRMTSSDLSS 300
           VNPEHAESWC+GLRKENI GCYRLMQEIVL ++R KSPKILP Q+RVTVRTRM SSDLSS
Sbjct: 241 VNPEHAESWCNGLRKENIMGCYRLMQEIVLDNTRRKSPKILP-QYRVTVRTRMRSSDLSS 300

Query: 301 --YSSSSSSSSSPNKRRKLNQSSVWIDDDKGNTEE 334
              SSSSSSSSSPNKRRKLNQ+ +W+ DDKGN  E
Sbjct: 301 SYSSSSSSSSSSPNKRRKLNQTHLWVHDDKGNNTE 334

[Close]

BLAST of Cp4.1LG01g12990 vs. NCBI nr
Match: gi|659090874|ref|XP_008446249.1| (PREDICTED: cyclin-D1-1 [Cucumis melo])

HSP 1 Score: 572.0 bits (1473), Expect = 6.7e-160
Identity = 296/336 (88.10%), Postives = 312/336 (92.86%), Query Frame = 1


Query: 1   MSVSISNCFSNLICPEDSSGVLSGESPGCS-SDFDSTACVEESIAVFIKDERRFVPDYDC 60
           MSVSISNCFSNL+C EDSSGV SGESPGCS SD +S ACVEESI+VFIK+ER FVPDYDC
Sbjct: 1   MSVSISNCFSNLLCQEDSSGVFSGESPGCSNSDLESPACVEESISVFIKNERHFVPDYDC 60

Query: 61  FSRFQSPSLDAAARLDSVAWILKVQAYYGFQPLTAYLSVNYLDRFLCSRRLPQTNGWPLQ 120
           FSRFQSPSLDAAARLDS+AWILKVQAYYGFQPLTAYLSVNYLDRFLCSRRLPQTNGWPLQ
Sbjct: 61  FSRFQSPSLDAAARLDSIAWILKVQAYYGFQPLTAYLSVNYLDRFLCSRRLPQTNGWPLQ 120

Query: 121 LLSVACLSLAAKMEEPLVPALLDLQVEGAKYIFEPRTICRMELLVLRVLDWRLRSITPFN 180
           LLSVACLSLAAKMEEPLVPALLDLQ+EGAKYIFEPRTICRMELLVLRVLDWRLRS+TPFN
Sbjct: 121 LLSVACLSLAAKMEEPLVPALLDLQIEGAKYIFEPRTICRMELLVLRVLDWRLRSVTPFN 180

Query: 181 FIAFFACKLDPSGDFIGFLISRATEIIVSNIREVIFLDNWPSCIAAAALLCAANEVPGLS 240
           FIAFFA KLDPSGDFI FLISRATEII+S+IREVIFL+ WPSCIAAAALLCAANEV  LS
Sbjct: 181 FIAFFAYKLDPSGDFIEFLISRATEIILSHIREVIFLEYWPSCIAAAALLCAANEVQSLS 240

Query: 241 VVNPEHAESWCSGLRKENITGCYRLMQEIVLVSSRSKSPKILPGQFRVTVRTRMTSSDLS 300
           VVNPEHAESWC+GLRKENI GCYRLMQEIVL ++R KSPKILP Q+RVTVRTRM SSDLS
Sbjct: 241 VVNPEHAESWCNGLRKENIMGCYRLMQEIVLDNTRRKSPKILP-QYRVTVRTRMRSSDLS 300

Query: 301 S--YSSSSSSSSSPNKRRKLNQSSVWIDDDKGNTEE 334
           S   SSSSSSSSSPNKRRKLNQ+  W+ DDKGN  E
Sbjct: 301 SSYSSSSSSSSSSPNKRRKLNQTHHWVHDDKGNNTE 335

[Close]

BLAST of Cp4.1LG01g12990 vs. NCBI nr
Match: gi|645281088|ref|XP_008245470.1| (PREDICTED: cyclin-D1-1 [Prunus mume])

HSP 1 Score: 466.1 bits (1198), Expect = 5.2e-128
Identity = 248/336 (73.81%), Postives = 280/336 (83.33%), Query Frame = 1


Query: 2   SVSISNCFSNLICPEDSSGVLSGESPGCSSDFDSTACVEESIAVFIKDERRFVPDYDCFS 61
           SV  S+CFS+L+C ED SG+LSGESP CSSD +S AC EESIA FI+DER +VP +D  S
Sbjct: 3   SVWSSDCFSDLLCCEDYSGILSGESPECSSDLESPACSEESIAGFIEDERNYVPGFDYLS 62

Query: 62  RFQSP-SLDAAARLDSVAWILKVQAYYGFQPLTAYLSVNYLDRFLCSRRLPQTNGWPLQL 121
           RF S  SLD +AR DSVAWILKVQ+YYGF PLTAYLSVNYLDRFL SRRLPQ NGWP+QL
Sbjct: 63  RFHSDHSLDISARADSVAWILKVQSYYGFHPLTAYLSVNYLDRFLYSRRLPQANGWPMQL 122

Query: 122 LSVACLSLAAKMEEPLVPALLDLQVEGAKYIFEPRTICRMELLVLRVLDWRLRSITPFNF 181
           LSVACLSLAAKMEEPLVP+LLDLQVEG K+IFEPRTI RMELLVL VLDWRLRSITPF+F
Sbjct: 123 LSVACLSLAAKMEEPLVPSLLDLQVEGTKFIFEPRTIRRMELLVLGVLDWRLRSITPFSF 182

Query: 182 IAFFACKLDPSGDFIGFLISRATEIIVSNIREVIFLDNWPSCIAAAALLCAANEVPGLSV 241
           +AFFACKLDP+  FIGFLISRATEII+SNI+E  FL+ WPSCIAAAA+L AANE+P LS+
Sbjct: 183 VAFFACKLDPTATFIGFLISRATEIILSNIKEASFLEYWPSCIAAAAILSAANEIPNLSL 242

Query: 242 VNPEHAESWCSGLRKENITGCYRLMQEIVLVSS--RSKSPKILPGQFRVTVRTRMTSSDL 301
            NPEHAESWC GL KE I GCYRLMQE+V+ +S  +  SP +LP Q RVTVR R+ SS  
Sbjct: 243 ENPEHAESWCGGLSKEKIIGCYRLMQEVVVENSGIKKSSPDVLP-QLRVTVRGRVRSSSE 302

Query: 302 SSYSSSSSSSSSP--NKRRKLNQSSVWIDDDKGNTE 333
           SS SS S SSSSP   KRRKLN + +W+DDDKGN+E
Sbjct: 303 SSSSSVSLSSSSPISYKRRKLN-NCLWVDDDKGNSE 336

[Close]

BLAST of Cp4.1LG01g12990 vs. NCBI nr
Match: gi|1009133944|ref|XP_015884178.1| (PREDICTED: cyclin-D1-1 [Ziziphus jujuba])

HSP 1 Score: 464.9 bits (1195), Expect = 1.2e-127
Identity = 243/332 (73.19%), Postives = 280/332 (84.34%), Query Frame = 1


Query: 1   MSVSISNCFSNLICPEDSSGVLSGESPGCSSDFDSTACVEESIAVFIKDERRFVPDYDCF 60
           MS+S S+CFS+L+C EDS G+LS ESP CSSD +S AC EESIA FI+DER FVP +D  
Sbjct: 1   MSLSCSDCFSDLLCAEDS-GILSRESPECSSDLESPACSEESIASFIEDERSFVPGFDYL 60

Query: 61  SRFQSPSLDAAARLDSVAWILKVQAYYGFQPLTAYLSVNYLDRFLCSRRLPQTNGWPLQL 120
           +RF+S  LDA+AR +SVAWILKV +YYGFQPLTAYLSVNYLDRFL SRRLPQTNGWPLQL
Sbjct: 61  ARFRSHPLDASARAESVAWILKVHSYYGFQPLTAYLSVNYLDRFLDSRRLPQTNGWPLQL 120

Query: 121 LSVACLSLAAKMEEPLVPALLDLQVEGAKYIFEPRTICRMELLVLRVLDWRLRSITPFNF 180
           LSVACLSLAAKMEEPLVP+LLDLQVEGAKYIFEPRTI RMELLVL VLDWRLRSITPF+F
Sbjct: 121 LSVACLSLAAKMEEPLVPSLLDLQVEGAKYIFEPRTIRRMELLVLGVLDWRLRSITPFSF 180

Query: 181 IAFFACKLDPSGDFIGFLISRATEIIVSNIREVIFLDNWPSCIAAAALLCAANEVPGLSV 240
           I +FACKLD +G F+GFLISRATEII+SNI+E  FL+ WPSCIAAAA+L AA ++P  S+
Sbjct: 181 IGYFACKLDSTGTFLGFLISRATEIILSNIQEASFLEYWPSCIAAAAILSAAGDIPDFSM 240

Query: 241 VNPEHAESWCSGLRKENITGCYRLMQEIVLVSSRSKSPKILPGQFRVTVRTRMTSSDLSS 300
           VNPE A+SWC GL KE I  CYRLM+E+VL + + K+PK LP Q RVT+RTR+ S D   
Sbjct: 241 VNPEKAQSWCDGLSKEKIISCYRLMKELVLENDQRKTPKFLP-QLRVTIRTRIRSGD--- 300

Query: 301 YSSSSSSSSSPNKRRKLNQSSVWIDDDKGNTE 333
            SSSSSSSSS  KRRKLN + +W+DDDKGN+E
Sbjct: 301 -SSSSSSSSSSFKRRKLN-NCLWVDDDKGNSE 325

[Close]

BLAST of Cp4.1LG01g12990 vs. NCBI nr
Match: gi|694361612|ref|XP_009360468.1| (PREDICTED: cyclin-D1-1-like [Pyrus x bretschneideri])

HSP 1 Score: 464.2 bits (1193), Expect = 2.0e-127
Identity = 248/335 (74.03%), Postives = 279/335 (83.28%), Query Frame = 1


Query: 6   SNCFSNLICPEDSSGVLSGESPGCSSDFDSTACVEESIAVFIKDERRFVPDYDCFSRFQS 65
           S+CFS+L+C EDS G LSGESP CSSD +S AC EE IA FI+ ER FVP +D  SRF S
Sbjct: 7   SDCFSDLLCAEDS-GKLSGESPECSSDVESPACSEECIAGFIEGERHFVPGFDYLSRFHS 66

Query: 66  PSLDAAARLDSVAWILKVQAYYGFQPLTAYLSVNYLDRFLCSRRLPQTNGWPLQLLSVAC 125
            SLD  AR DSVAWILKVQ+YYGFQPLTAYLSVNYLDRFL SRRLPQ NGWP+QLLSVAC
Sbjct: 67  QSLDVTARADSVAWILKVQSYYGFQPLTAYLSVNYLDRFLYSRRLPQANGWPMQLLSVAC 126

Query: 126 LSLAAKMEEPLVPALLDLQVEGAKYIFEPRTICRMELLVLRVLDWRLRSITPFNFIAFFA 185
           LSLAAKMEEPLVP+LLDLQVEGAK+IFEPRT+ RMELLVL VLDWRLRSITPF+FIAFFA
Sbjct: 127 LSLAAKMEEPLVPSLLDLQVEGAKFIFEPRTVRRMELLVLSVLDWRLRSITPFSFIAFFA 186

Query: 186 CKLDPSGDFIGFLISRATEIIVSNIREVIFLDNWPSCIAAAALLCAANEVPGLSVVNPEH 245
           CKLDP+  FIGFLISRAT+II+SNI+E  FL+ WPSCIAAAA+L AA+E+P LS+ NPEH
Sbjct: 187 CKLDPTATFIGFLISRATDIILSNIQESSFLEYWPSCIAAAAILSAADEIPNLSLENPEH 246

Query: 246 AESWCSGLRKENITGCYRLMQEIVLVSSRSK--SPKILPGQFRVTVRTRMTSSDLSSYSS 305
           AESWC GL KE I GCYRLMQ++V+ +SR+K  SP +LP Q RVTVR RM SS  SS SS
Sbjct: 247 AESWCDGLSKEKIIGCYRLMQDLVVGNSRNKKSSPNVLPLQLRVTVRGRMRSSSDSSSSS 306

Query: 306 ----SSSSSSSP--NKRRKLNQSSVWIDDDKGNTE 333
               SS SSSSP   KRRKLN + +W+DDDKGN+E
Sbjct: 307 SISLSSPSSSSPISYKRRKLN-NCLWVDDDKGNSE 339

The following BLAST results are available for this feature:

BLAST of Cp4.1LG01g12990 vs. Swiss-Prot


Match Name	E-value	Identity	Description
CCD11_ARATH	5.4e-101	62.92	Cyclin-D1-1 OS=Arabidopsis thaliana GN=CYCD1-1 PE=1 SV=3	[more]
CCD21_ORYSJ	6.7e-67	47.80	Cyclin-D2-1 OS=Oryza sativa subsp. japonica GN=CYCD2-1 PE=3 SV=2	[more]
CCD12_ORYSJ	2.7e-60	44.87	Cyclin-D1-2 OS=Oryza sativa subsp. japonica GN=CYCD1-2 PE=3 SV=2	[more]
CCD11_ORYSJ	1.4e-56	52.02	Cyclin-D1-1 OS=Oryza sativa subsp. japonica GN=CYCD1-1 PE=3 SV=1	[more]
CCD22_ORYSJ	1.1e-40	37.46	Cyclin-D2-2 OS=Oryza sativa subsp. japonica GN=CYCD2-2 PE=2 SV=1	[more]

BLAST of Cp4.1LG01g12990 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KQB6_CUCSA	1.5e-161	88.36	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G603320 PE=3 SV=1	[more]
M5XCT0_PRUPE	1.4e-127	73.21	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa008337mg PE=3 SV=1	[more]
A0A067JBV1_JATCU	1.3e-125	72.37	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21777 PE=3 SV=1	[more]
A0A0M4AN07_POPCN	2.2e-125	73.41	Cyclin delta-1 family protein OS=Populus canescens GN=CycD1;2 PE=2 SV=1	[more]
G9BZU9_POPCA	3.8e-125	73.41	D1-type cyclin OS=Populus canadensis GN=CYCD1;1 PE=2 SV=1	[more]

BLAST of Cp4.1LG01g12990 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G70210.1	3.1e-102	62.92	CYCLIN D1;1	[more]
AT2G22490.2	9.7e-40	36.88	Cyclin D2;1	[more]
AT5G65420.3	1.7e-36	37.78	CYCLIN D4;1	[more]
AT4G34160.1	1.9e-35	33.00	CYCLIN D3;1	[more]
AT5G10440.1	3.6e-34	35.79	cyclin d4;2	[more]

BLAST of Cp4.1LG01g12990 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449435382\|ref\|XP_004135474.1\|	2.1e-161	88.36	PREDICTED: cyclin-D1-1 [Cucumis sativus]	[more]
gi\|659090874\|ref\|XP_008446249.1\|	6.7e-160	88.10	PREDICTED: cyclin-D1-1 [Cucumis melo]	[more]
gi\|645281088\|ref\|XP_008245470.1\|	5.2e-128	73.81	PREDICTED: cyclin-D1-1 [Prunus mume]	[more]
gi\|1009133944\|ref\|XP_015884178.1\|	1.2e-127	73.19	PREDICTED: cyclin-D1-1 [Ziziphus jujuba]	[more]
gi\|694361612\|ref\|XP_009360468.1\|	2.0e-127	74.03	PREDICTED: cyclin-D1-1-like [Pyrus x bretschneideri]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Cellular Component**
Term	Definition
GO:0005634	nucleus

Vocabulary: **INTERPRO**
Term	Definition
IPR013763	Cyclin-like
IPR006671	Cyclin_N
IPR004367	Cyclin_C-dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0051726	regulation of cell cycle
biological_process	GO:0044260	cellular macromolecule metabolic process
biological_process	GO:0042023	DNA endoreduplication
biological_process	GO:0000278	mitotic cell cycle
biological_process	GO:0045736	negative regulation of cyclin-dependent protein serine/threonine kinase activity
biological_process	GO:0044238	primary metabolic process
biological_process	GO:0010440	stomatal lineage progression
biological_process	GO:0008150	biological_process
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG01g12990.1	Cp4.1LG01g12990.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004367	Cyclin, C-terminal domain	PFAM	PF02984	Cyclin_C	coord: 175..276 score: 1.4
IPR004367	Cyclin, C-terminal domain	SMART	SM01332	Cyclin_C_2	coord: 175..310 score: 2.8
IPR006671	Cyclin, N-terminal	PFAM	PF00134	Cyclin_N	coord: 43..172 score: 1.9
IPR006671	Cyclin, N-terminal	PROSITE	PS00292	CYCLINS	coord: 73..104 scor
IPR013763	Cyclin-like	GENE3D	G3DSA:1.10.472.10		coord: 64..166 score: 1.8E-28coord: 167..278 score: 7.
IPR013763	Cyclin-like	SMART	SM00385	cyclin_7	coord: 78..166 score: 4.2
IPR013763	Cyclin-like	unknown	SSF47954	Cyclin-like	coord: 34..172 score: 2.38E-34coord: 157..280 score: 1.2
None	No IPR available	PANTHER	PTHR10177	CYCLINE	coord: 6..331 score: 7.6E
None	No IPR available	PANTHER	PTHR10177:SF206	CYCLIN-D1-1	coord: 6..331 score: 7.6E

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cp4.1LG01g12990	Cucsa.285780	Cucumber (Gy14) v1	cgycpeB0754
Cp4.1LG01g12990	CmaCh04G015920	Cucurbita maxima (Rimu)	cmacpeB720
Cp4.1LG01g12990	CmaCh04G002980	Cucurbita maxima (Rimu)	cmacpeB726
Cp4.1LG01g12990	CmoCh04G003120	Cucurbita moschata (Rifu)	cmocpeB678
Cp4.1LG01g12990	CmoCh04G016650	Cucurbita moschata (Rifu)	cmocpeB673
Cp4.1LG01g12990	Cla010113	Watermelon (97103) v1	cpewmB432
Cp4.1LG01g12990	Csa5G603320	Cucumber (Chinese Long) v2	cpecuB416
Cp4.1LG01g12990	MELO3C012023	Melon (DHL92) v3.5.1	cpemeB377
Cp4.1LG01g12990	ClCG05G025060	Watermelon (Charleston Gray)	cpewcgB393
Cp4.1LG01g12990	CSPI05G22970	Wild cucumber (PI 183967)	cpecpiB415
Cp4.1LG01g12990	Lsi04G005150	Bottle gourd (USVL1VR-Ls)	cpelsiB360
Cp4.1LG01g12990	MELO3C012023.2	Melon (DHL92) v3.6.1	cpemedB437
Cp4.1LG01g12990	CsaV3_5G031850	Cucumber (Chinese Long) v3	cpecucB0518
Cp4.1LG01g12990	Bhi07G001372	Wax gourd	cpewgoB0562
Cp4.1LG01g12990	Carg07976	Silver-seed gourd	carcpeB0528
Cp4.1LG01g12990	Carg01762	Silver-seed gourd	carcpeB1177

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Cp4.1LG01g12990	Cp4.1LG01g04070	Cucurbita pepo (Zucchini)	cpecpeB375

The following block(s) are covering this gene:


Gene	Organism	Block
Cp4.1LG01g12990	Cucumber (Chinese Long) v3	cpecucB0470
Cp4.1LG01g12990	Cucurbita pepo (Zucchini)	cpecpeB346
Cp4.1LG01g12990	Watermelon (97103) v1	cpewmB444
Cp4.1LG01g12990	Cucumber (Gy14) v2	cgybcpeB061
Cp4.1LG01g12990	Cucumber (Gy14) v2	cgybcpeB626
Cp4.1LG01g12990	Melon (DHL92) v3.6.1	cpemedB459