Cp4.1LG01g12980 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG01g12980
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionDna-directed rna polymerase subunit a
LocationCp4.1LG01 : 8475663 .. 8481227 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TCCTCTCGTACAGAAGAAGCTTCAATGGCGCCAAAAACTCTCTGAGGATCGCATGGAATGTTTTCAGGGACGATCGTCTTCTTAGACAAAAACGGCTTACAGGTCCGCATATTGCAGGCTTATCTTCCTCTGCAGCTTTGTATTTCAATGAATTAGGGCAATTTCTACACTATTTCAGAAGGTTCTCTCGTACCAGAGGCTGGGAAGACGGCTTAAGTTCAGGGGAGAAGGCGTCAGAGGATTTGTACACTGTAAAAGCAGGTTTAGATGAAGATGGAAGAGACTAAGTCCCGACCGTGTATTTCCTAGAAACTGAAATTGTCTCCTAACAATTCGGAAGCAGTAAGTTCTGAAAGGGTTGGAGATTCAAATGCTTCAAACTTGGTAACGAAGACTGCTACAGCTCTTGGGGACTTCAAATTAATAGCAATGTAAGTTTCTTTGATACCCGATTCATAGCTTGATGTTGGAATGTGTTTGTCTTGTATAAGTTGTGATCATGTTCTTCCTTAACTGGATCCCCAATTCAGATTTATATCTATAATGAAAAATTCCTACATTGCTCACCAGTTTATAAGCTAGGCATGTTTCATTATAGACATGGGGCTTGATCGAGGAATTTCTTGAAAGTAACTCCTAGTTTTCTTTAGACCGCTCGTATCAGAATTAGTACGTTCTAATGAGGTGAAAAATTTGCAGACATCTCTCATACAATCCCCCAGATATGAATAAGAACATACTGAGATTTTTGGAAAAGTTAACAACATATACAGAGGTAATAATGACATCCTCCAAACTATTTGCAATGGACCAAGCCCACCGACATGATTCTCCTCCAGATTTTTAAAACGTATCTATTAGGGAGAGATTTCCACACCCTTAGAAAGAATGTTTTGTTCTTCCCGACCTACGTGAGAGCTCAAGATACTTCATTGTTCTGTTTCTGACACTTTAGCTTGTCTTCTTTATATTTTAAGCAATGGGTTACTAAGGAAGGTCATTTAGCTCTTACAAGGCAATTCCAGTCATTGAGAAGCTACCTTTTAAAATTGAGAGCATTGATCAGGACAAACACCTGGCAGCCATAGGAAAGTGATTGGAGGATCATGTGAATGAAACGACTTTAGTTCACTCCAGTTGGCTCTGTATTTTGGGTGGAATAAGGTAATCTTTGTACTTATATAGTATATTGCCTCATAAATGAACTGCAATCAATTTTGTTGCTCATAATATCATTTCCCATTGAAGCACTTTATAGGACTGGCCATTATGAGCTACTGTAAGATTGAACCACTGTCCTGCGATTTGACTGTACATCTCTGATTTGATCCATTTTCTTTATAGTTCCTTGAGAGTTATTTTCTCTGTGATTCCAGCCATAGAGGTTTTCTACCAAGATATGTATAGCATTTCAAGGATATGAAGTTTTTAAGGGAGGATCTGATATTCAGTCATGGAGGTTTTCTACCAAGATAGTCCTTTTATTAATCTGTTCTTTCTTTGGCCACTTCATATGTAGAATAGAATGGCACATTGAGCTAGATAGAATAGAGCCAAATTCATGTTCTGTTAAGAACTGAAGTGGACGGTAATAGGAAATCATGTCTGCTGTGAAAATATATCTGTAACTTCAGTTGAGCTGAGTGAATGAAGATTGTTAGGTTCATTCTTATTCTTTGGTGTCTAACATGGTTGTGTCCTCTTCTGATATTTCGTGATATCGTGATTTCTCGGCATTTGTTTCTCTTAGCTGAAATCAACGTCTTTCCTAAGTCAATAAAGGTGTTGTGGAGTAGTTGGTTATCACGTTAGTCGAACACACTAAAGGTGGTGTGGTAATTTCTTAGCTGTAGTTAGGTACGTCTATGACAAACTAGCTGTAGTCGAACACACTAAAGGTGGGGTGGTTAATTATTATATATTATTTGTTTGTATATTTTTTTGCTCGTGGGTTGTCATGTTTTAGAAACTAGATGTAATTAGGTACGTCTTTGCCAAACCAATGAAGGTGTCGTGGTGTAGTTGGTTATCACGTCAGTCTAACACACTAAAAGTCTTCGGTTCAAGTCTGGGCGATGCTAAGCCAATTTTTATTATTATTTGTTTGAATATTTTTTTTGCTCGTGGGTGGTCATGTTTTAAAAACTAGCTATAATTAGGGACGTCTTTGCCAAACCAGTGAAGGTGTCATGGTGTAGTTGGTTATCACGTCAGTCTAATTGAAGGTCTCCAGCTCAAGTGTCATTTTTTAGAAACTAGCTTTAATTTGGGACGTCTTTGCTAAACTAGTGAAGGTGTTGTGGTGTAGTTGGTTATCACGTCAGTCTAACACATTGAAGGTTTCCCGTTCAAGTCTCAGTGGATCCAAATCAATTTTTATTATATATTATTTGTTTGTATATATTTTTTGCCCGCGAGTGGTCATGTTTTAAAAACTATCTGTAATTAGGGACGTCTTTGCCAAACCAGTGAAGGTGTCGTGGTGTAGTTGGTTATCACGTCAGTCTCTCCAGTTCAAGTCTGGGCGACGCCAAATCAATTTTTATTATATATTTATTTGTTTTTTTTTTTTTTTTTTTTTTNCAGTGAAGGTGTTATGGTGTAGTTGGTTATCATGTCAGTCTAACACACTGAAGGACTCTAGTTCAAATCTGGGCGACGCCAAATCAATTTTTATTATATATTATTTTTGCCTGCGAGTGGTCATGTTTTAGAAACTAGCTGTAATTAGGTACGTCTTTAACAACCAATGAAGGTGTTGTGGTGTAGTTGGTTATCACGTCAGTTTAACACACTAAAGGTCTTTAGTTCAAGTTTGAGCGATGCTAAATCAATTTTTATTATTATTTTTTTGCTCGTGGGTGGTCATGTTTTAAAAACTAGCTGTAATTAGGGACGTCTTTGCCAAACCAGTGAAGGTGTCGTGGTGTAGTTGGTTATCACGTCAGTCTTACACATTGAAAGTCTCCAGTTCAAGTCTGGGCGATGCCAAATCAATTTTTATTATATATTATTTGTTTGTATTTTTTTTTTTTTTTGGCTCGTGGGTGGTCATGTTTTAAAAACTAGCTGTAATTAGGGACGTCTTTGCAAAACTAGTGAAGGTGTCGTGGTGTAGTTGGTTATCATGTCAGTCTAACATCAAATTTGGGCAACGCCAAATCAATTTTTATTATATATTATTTGTTTGTATATTTTTTTTGCCCGCGAATGGTCATGTTTTAGAAACTAGCTGTAATTAGGTACGTTTTTGCCAAACCAATGAAGGTGTTGTGGTGTAGTTGGTTATCACGTCAGTCTTACACACTGAAGGTCTCCAGTTCAAGTTTGGGCGACGCCAAGTCAATTTTTATAATATATTATTTGTTTGTATATTTTTTTTGCCTGCGGGTGGTCATGTTTTAAAAACTAGCGGTAACTAGGGACGTCTTTGCCAAACCAGTGAAGGTGTCATGATGTAGTTGGTTATCATGTCAGTCTAACACACAAAAGGTCTCCGGTTCAAGTTTGGGTGATGCCAAATTAATTTTTATTATTATATATTATTTGTTTGTATATTTTTTTGCTTGTGGGTTATGTTTTAGAAACTAGCTGTAATTAGGTACGTCTTTGCCAAACTAATGAAGGTGTTGTGGAAACTAATGAAGGTGTTGTGGTGTAGTTGGTTATTACGTCAGTCTTACACACTGAAGGTCTCCAGCTCAAGTCTGTGCGACGCCAAGTCAATTTTTATAATATATTATTTGTTTGTATATTTTTTTTTGCTCGCAGGTGGTCATGTTTTAAGAACTAGCTGTAACTAGGGACGTCTTTGCCAAACCAGTGAAGGTGTCGTGGTGTAGTTGGTTATCATGTCGGTCTAACACACTGAAGGTCTTCAGTTCAAGTTTGAGCGACACCAAATAGGAGGTATGCTGGTCTGTAGCTAAATTCATCTATACCTTTGAAATGTTTCTAGACTATAAAATTAATTTAAAAATTATAAATTTATAGTGACGTAATTTCTGAGGTGGCACCCACGTAGACCGGTGGGTGTATCCCAAAATTTGTGGGGGTGCGAAGAGAAGATGCGTTGATAAACCCTTGCTCGACGCCTTTGCTAAACCCGGTGAGAAGATAAAGATGGCATGGACTACAGTTCCAGCTTTCCATCTCCTCCCTCCTCTCTTTGCGCTTCATAAACCTAACTCTCCGCCGTGCTTCTTCTCCAATCCTTCAAGTGCTCTGCAACACACACGCCTCTCGCCCACTCTCAGGCTTCCATTTCAACCCTCCTCCTCCTTCGGAAACCAGATTTGCAGGGCCGCCGAATACAAATTTCCCGACCCAATTCCTGAATTCGCCGTCGCTGTAATCTCCCTCCCTTCTGGGCGTTCATGTAAATGGATGATTTCGAAATGTCTTGAAATAATTTCTTTTCTGTTCAGGAGACCGAGAAGTTCAGGGCTCATTTGCTTACCAAACTTTCTAAGAAAGATATTTACGGGGATTCGGTTCAAGAGGTCGTCGGAGTATGCACTGAGGTATGAACACTGCCATCCTCTGATTGAACATAATAGCTCAACAACTGCATGTCTTTACCTATGTTATGGCCTTCCAACTAAACAGATATTCAACACCTTTATGCATACTGAGTATGGCGGCCCTGGGACCTTGTTGGTTCTACCTTTCATTGACATGTCTGATACAATCAACGAACGAGGATTACCTGGAGGACCTCAAGCTGCCCGTGCTGCAGTCAAATGGGCTCAAGAGCATGTTGATAAAGACTGGAACCTGTGGACTGGTGACGATGGCACCTAACAAAAGTCCCCCTCAAGAGTATATTTTGTTGAGATGGGCAGAGTTCTATTGTTATACCTGATTTTCGAGTTCAGCTGGTTGCTTTCTTCTGGATCTTTATCAAAGGGATTGTTGATATATGAGCTGAATTTGTTTTTGTATGAACTATCAGAGATCTCTAGAATGACGAGGATAGAACTTAGATAAAGCAAACAGAATCCTTTAGCTGTCATGCTGGACAAAATTTGCATCAGTGTATTTCTATATGGCTTGAGCAATCTTAGAGATATAAAACATTTGATGTCTTTATGAACAATCTAAATTGTTTTAGCTGTACGGTAATAAGACGAGTGCTGTTACTTTAAGTGAATTGTGGATGTTGATGCTTCTTGTCTAAAACTGATCATTACAATACTCGCCATCAAACTAGTACTTACAGGTGAAGTTTTTTTTTTTACCTAAACAGTTAGTTCTGAAGTACATTCATATCAGGTTCTTTAGTCCAAAAGGAGGGTAATGACTAAAATTTACAATTTCCATGTCCATAAAATGTAATGCACATACTTCCTTACCGATGGCGTTGATCGAGCAGTTCCTCCCTATCAATGAAACGCTCGAGAAGCTCTTCCTCTTGCAAAACCAAGCAGTCTTCGGCTTTTCCAAACAAGTCGTAGCGATGTTTGGCAACAATGTCATAGATAGCATCTCTAAGAGGAGTCGGGATTATCAAGAATGCGCTCAAAGCTGAGTAGGGGAGAGGCAAATAGGACAAGACCTTCAGAG

mRNA sequence

TCCTCTCGTACAGAAGAAGCTTCAATGGCGCCAAAAACTCTCTGAGGATCGCATGGAATGTTTTCAGGGACGATCGTCTTCTTAGACAAAAACGGCTTACAGGTCCGCATATTGCAGGCTTATCTTCCTCTGCAGCTTTGTATTTCAATGAATTAGGGCAATTTCTACACTATTTCAGAAGGTTCTCTCGTACCAGAGGCTGGGAAGACGGCTTAAGTTCAGGGGAGAAGGCGTCAGAGGATTTGTACACTGTAAAAGCAGGTTTAGATGAAGATGGAAGAGACTAAGTCCCGACCGTGTATTTCCTAGAAACTGAAATTGTCTCCTAACAATTCGGAAGCAGTAAGTTCTGAAAGGGTTGGAGATTCAAATGCTTCAAACTTGGTAACGAAGACTGCTACAGCTCTTGGGGACTTCAAATTAATAGCAATGTGGTCATGTTTTAAGAACTAGCTGTAACTAGGGACGTCTTTGCCAAACCAGTGAAGGTGTCGTGGTGTAGTTGGTTATCATGTCGGTCTAACACACTGAAGGTCTTCAGTTCAAGTTTGAGCGACACCAAATAGGAGTGACGTAATTTCTGAGGTGGCACCCACGTAGACCGGTGGGTGTATCCCAAAATTTGTGGGGGTGCGAAGAGAAGATGCGTTGATAAACCCTTGCTCGACGCCTTTGCTAAACCCGGTGAGAAGATAAAGATGGCATGGACTACAGTTCCAGCTTTCCATCTCCTCCCTCCTCTCTTTGCGCTTCATAAACCTAACTCTCCGCCGTGCTTCTTCTCCAATCCTTCAAGTGCTCTGCAACACACACGCCTCTCGCCCACTCTCAGGCTTCCATTTCAACCCTCCTCCTCCTTCGGAAACCAGATTTGCAGGGCCGCCGAATACAAATTTCCCGACCCAATTCCTGAATTCGCCGTCGCTGAGACCGAGAAGTTCAGGGCTCATTTGCTTACCAAACTTTCTAAGAAAGATATTTACGGGGATTCGGTTCAAGAGGTCGTCGGAGTATGCACTGAGATATTCAACACCTTTATGCATACTGAGTATGGCGGCCCTGGGACCTTGTTGGTTCTACCTTTCATTGACATGTCTGATACAATCAACGAACGAGGATTACCTGGAGGACCTCAAGCTGCCCGTGCTGCAGTCAAATGGGCTCAAGAGCATGTTGATAAAGACTGGAACCTGTGGACTGGTGACGATGGCACCTAACAAAAGTCCCCCTCAAGAGTATATTTTGTTGAGATGGGCAGAGTTCTATTGTTATACCTGATTTTCGAGTTCAGCTGGTTGCTTTCTTCTGGATCTTTATCAAAGGGATTGTTGATATATGAGCTGAATTTGTTTTTGTATGAACTATCAGAGATCTCTAGAATGACGAGGATAGAACTTAGATAAAGCAAACAGAATCCTTTAGCTGTCATGCTGGACAAAATTTGCATCAGTGTATTTCTATATGGCTTGAGCAATCTTAGAGATATAAAACATTTGATGTCTTTATGAACAATCTAAATTGTTTTAGCTGTACGGTAATAAGACGAGTGCTGTTACTTTAAGTGAATTGTGGATGTTGATGCTTCTTGTCTAAAACTGATCATTACAATACTCGCCATCAAACTAGTACTTACAGGTGAAGTTTTTTTTTTTACCTAAACAGTTAGTTCTGAAGTACATTCATATCAGGTTCTTTAGTCCAAAAGGAGGGTAATGACTAAAATTTACAATTTCCATGTCCATAAAATGTAATGCACATACTTCCTTACCGATGGCGTTGATCGAGCAGTTCCTCCCTATCAATGAAACGCTCGAGAAGCTCTTCCTCTTGCAAAACCAAGCAGTCTTCGGCTTTTCCAAACAAGTCGTAGCGATGTTTGGCAACAATGTCATAGATAGCATCTCTAAGAGGAGTCGGGATTATCAAGAATGCGCTCAAAGCTGAGTAGGGGAGAGGCAAATAGGACAAGACCTTCAGAG

Coding sequence (CDS)

ATGGCATGGACTACAGTTCCAGCTTTCCATCTCCTCCCTCCTCTCTTTGCGCTTCATAAACCTAACTCTCCGCCGTGCTTCTTCTCCAATCCTTCAAGTGCTCTGCAACACACACGCCTCTCGCCCACTCTCAGGCTTCCATTTCAACCCTCCTCCTCCTTCGGAAACCAGATTTGCAGGGCCGCCGAATACAAATTTCCCGACCCAATTCCTGAATTCGCCGTCGCTGAGACCGAGAAGTTCAGGGCTCATTTGCTTACCAAACTTTCTAAGAAAGATATTTACGGGGATTCGGTTCAAGAGGTCGTCGGAGTATGCACTGAGATATTCAACACCTTTATGCATACTGAGTATGGCGGCCCTGGGACCTTGTTGGTTCTACCTTTCATTGACATGTCTGATACAATCAACGAACGAGGATTACCTGGAGGACCTCAAGCTGCCCGTGCTGCAGTCAAATGGGCTCAAGAGCATGTTGATAAAGACTGGAACCTGTGGACTGGTGACGATGGCACCTAA

Protein sequence

MAWTTVPAFHLLPPLFALHKPNSPPCFFSNPSSALQHTRLSPTLRLPFQPSSSFGNQICRAAEYKFPDPIPEFAVAETEKFRAHLLTKLSKKDIYGDSVQEVVGVCTEIFNTFMHTEYGGPGTLLVLPFIDMSDTINERGLPGGPQAARAAVKWAQEHVDKDWNLWTGDDGT
Homology
[Close]
BLAST of Cp4.1LG01g12980 vs. TrEMBL
Match: A0A0A0KTS5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G603340 PE=4 SV=1)

HSP 1 Score: 280.0 bits (715), Expect = 1.9e-72
Identity = 141/175 (80.57%), Postives = 150/175 (85.71%), Query Frame = 1 

Query: 1   MAWTTV-PAFHLLPPLF-ALHKPNSPPCFFSN-PSSALQHTRLSPTLRLPFQPSSSFGNQ 60
           MAWTT  P+F+LLP LF   HKP+ PP FFSN PS+ L   RLSPTL LP   SSSF   
Sbjct: 1   MAWTTTSPSFNLLPSLFFPFHKPSLPPSFFSNNPSTPL---RLSPTLTLP---SSSFPTH 60

Query: 61  ICRAAEYKFPDPIPEFAVAETEKFRAHLLTKLSKKDIYGDSVQEVVGVCTEIFNTFMHTE 120
           IC AAEYKFPDPIPEFAVAETEKFRAHLL KLSK+DIYGDS+Q+VVG+CTEIFNTFMHTE
Sbjct: 61  ICTAAEYKFPDPIPEFAVAETEKFRAHLLQKLSKRDIYGDSLQQVVGICTEIFNTFMHTE 120

Query: 121 YGGPGTLLVLPFIDMSDTINERGLPGGPQAARAAVKWAQEHVDKDWNLWTGDDGT 173
           YGGPGTLLVLPFIDMSD INERGLPGGPQAARAAVKWAQ+HVDKDWN WTGDD T
Sbjct: 121 YGGPGTLLVLPFIDMSDAINERGLPGGPQAARAAVKWAQDHVDKDWNQWTGDDAT 169

[Close]
BLAST of Cp4.1LG01g12980 vs. TrEMBL
Match: D7TNM3_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_01s0026g00670 PE=4 SV=1)

HSP 1 Score: 228.8 bits (582), Expect = 5.0e-57
Identity = 106/134 (79.10%), Postives = 116/134 (86.57%), Query Frame = 1 

Query: 38  TRLSPTLRLPFQPSSSFGNQICRAAEYKFPDPIPEFAVAETEKFRAHLLTKLSKKDIYGD 97
           T+L P L      SSSF N ICRAAEYKFPDPIPEFA  ETEKFR HLL K SKKDIYG+
Sbjct: 59  TKLQPQLHSLVFSSSSFANHICRAAEYKFPDPIPEFAQVETEKFRTHLLNKFSKKDIYGE 118

Query: 98  SVQEVVGVCTEIFNTFMHTEYGGPGTLLVLPFIDMSDTINERGLPGGPQAARAAVKWAQE 157
           SV+EVVG+CTEIF+TF+HTEYGGPGTLLV+PFIDM+DT+NERGLPG  QAARAAVKWAQ+
Sbjct: 119 SVEEVVGICTEIFSTFLHTEYGGPGTLLVIPFIDMADTLNERGLPGS-QAARAAVKWAQD 178

Query: 158 HVDKDWNLWTGDDG 172
           HVDKDWN WTGDDG
Sbjct: 179 HVDKDWNEWTGDDG 191

[Close]
BLAST of Cp4.1LG01g12980 vs. TrEMBL
Match: V4TEK1_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10032870mg PE=4 SV=1)

HSP 1 Score: 221.9 bits (564), Expect = 6.2e-55
Identity = 97/123 (78.86%), Postives = 112/123 (91.06%), Query Frame = 1 

Query: 47  PFQPSSSFGNQICRAAEYKFPDPIPEFAVAETEKFRAHLLTKLSKKDIYGDSVQEVVGVC 106
           P   S+SF N ICRAA+YKFPDPIPEFA +ET+KFR HLL KL+KKD++GDS+++VVG+C
Sbjct: 57  PLSFSASFRNHICRAADYKFPDPIPEFADSETQKFRTHLLNKLAKKDMFGDSLEDVVGIC 116

Query: 107 TEIFNTFMHTEYGGPGTLLVLPFIDMSDTINERGLPGGPQAARAAVKWAQEHVDKDWNLW 166
           TEIFNTF+H+EYGGPGTLLVLPFIDM+DT+NERGLPGGPQAARAAVKWAQ HVDKDW  W
Sbjct: 117 TEIFNTFLHSEYGGPGTLLVLPFIDMADTLNERGLPGGPQAARAAVKWAQRHVDKDWKEW 176

Query: 167 TGD 170
           TGD
Sbjct: 177 TGD 179

[Close]
BLAST of Cp4.1LG01g12980 vs. TrEMBL
Match: A0A067GV61_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g030190mg PE=4 SV=1)

HSP 1 Score: 221.1 bits (562), Expect = 1.1e-54
Identity = 97/123 (78.86%), Postives = 112/123 (91.06%), Query Frame = 1 

Query: 47  PFQPSSSFGNQICRAAEYKFPDPIPEFAVAETEKFRAHLLTKLSKKDIYGDSVQEVVGVC 106
           P   S+SF N ICRAAEYKFPDPIPEFA +ET+KFR HLL KL+KKD++GDS+++VVG+C
Sbjct: 57  PLSFSASFRNHICRAAEYKFPDPIPEFADSETQKFRTHLLNKLAKKDMFGDSLEDVVGIC 116

Query: 107 TEIFNTFMHTEYGGPGTLLVLPFIDMSDTINERGLPGGPQAARAAVKWAQEHVDKDWNLW 166
           TEIF+TF+H+EYGGPGTLLVLPFIDM+DT+NERGLPGGPQAARAAVKWAQ HVDKDW  W
Sbjct: 117 TEIFSTFLHSEYGGPGTLLVLPFIDMADTLNERGLPGGPQAARAAVKWAQRHVDKDWKEW 176

Query: 167 TGD 170
           TGD
Sbjct: 177 TGD 179

[Close]
BLAST of Cp4.1LG01g12980 vs. TrEMBL
Match: A0A0D2SJG9_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_005G185900 PE=4 SV=1)

HSP 1 Score: 218.8 bits (556), Expect = 5.2e-54
Identity = 111/172 (64.53%), Postives = 130/172 (75.58%), Query Frame = 1 

Query: 5   TVPAFHLLP-PLFALHK-----PNSPPCFFSNPSSALQHTRLSPTLRLPFQPSSSFGNQ- 64
           ++P+F   P P F+        PNSP   F +  ++      S T + P   S SF +  
Sbjct: 15  SLPSFSSPPTPFFSFSSSYSFTPNSPSFAFKSSFTS------SLTSKAPTPNSLSFSSTT 74

Query: 65  -ICRAAEYKFPDPIPEFAVAETEKFRAHLLTKLSKKDIYGDSVQEVVGVCTEIFNTFMHT 124
            IC+AAEYKFPDPIPEFA AE +KFR+HLL KLSKKD YGDSV+EVVG+CTEIF+TF+HT
Sbjct: 75  FICKAAEYKFPDPIPEFADAEMDKFRSHLLNKLSKKDTYGDSVEEVVGICTEIFSTFLHT 134

Query: 125 EYGGPGTLLVLPFIDMSDTINERGLPGGPQAARAAVKWAQEHVDKDWNLWTG 169
           EYGGPGTLLV+PFIDM+DTINERGLPGGPQAARAAVKWAQ+HVDKDW  WTG
Sbjct: 135 EYGGPGTLLVIPFIDMADTINERGLPGGPQAARAAVKWAQDHVDKDWKEWTG 180

[Close]
BLAST of Cp4.1LG01g12980 vs. TAIR10
Match: AT1G10522.1 (AT1G10522.1 unknown protein)

HSP 1 Score: 204.9 bits (520), Expect = 3.9e-53
Identity = 89/113 (78.76%), Postives = 102/113 (90.27%), Query Frame = 1 

Query: 58  ICRAAEYKFPDPIPEFAVAETEKFRAHLLTKLSKKDIYGDSVQEVVGVCTEIFNTFMHTE 117
           +CRAAEYKFPDPIPEFA AETEKFR H+L KLSK+D++ DSV E+VGVCTEIF TF+ +E
Sbjct: 67  VCRAAEYKFPDPIPEFAEAETEKFRDHMLNKLSKRDLFEDSVDEIVGVCTEIFETFLRSE 126

Query: 118 YGGPGTLLVLPFIDMSDTINERGLPGGPQAARAAVKWAQEHVDKDWNLWTGDD 171
           YGGPGTLLV+PFIDM+DT+NER LPGGPQAARAA+KWAQ+HVDKDW  WTG D
Sbjct: 127 YGGPGTLLVIPFIDMADTLNERELPGGPQAARAAIKWAQDHVDKDWKEWTGTD 179

[Close]
BLAST of Cp4.1LG01g12980 vs. NCBI nr
Match: gi|659090876|ref|XP_008446250.1| (PREDICTED: uncharacterized protein LOC103489037 [Cucumis melo])

HSP 1 Score: 287.3 bits (734), Expect = 1.7e-74
Identity = 142/173 (82.08%), Postives = 150/173 (86.71%), Query Frame = 1 

Query: 1   MAWTTVPAFHLLPPLF-ALHKPNSPPCFFSNPSSALQHTRLSPTLRLPFQPSSSFGNQIC 60
           MAWTT P+F+LLPPLF + HKP+ P  FFSN  SA    RLSPTL LP   SSSF   IC
Sbjct: 1   MAWTTSPSFNLLPPLFFSFHKPSLPLSFFSNNPSA--PPRLSPTLTLP-SSSSSFPTHIC 60

Query: 61  RAAEYKFPDPIPEFAVAETEKFRAHLLTKLSKKDIYGDSVQEVVGVCTEIFNTFMHTEYG 120
            AAEYKFPDPIPEFAVAETEKFRAHLL KLSKKDIYGDS+Q+VVG+CTEIFNTFMHTEYG
Sbjct: 61  TAAEYKFPDPIPEFAVAETEKFRAHLLQKLSKKDIYGDSLQQVVGICTEIFNTFMHTEYG 120

Query: 121 GPGTLLVLPFIDMSDTINERGLPGGPQAARAAVKWAQEHVDKDWNLWTGDDGT 173
           GPGTLLVLPFIDMSDTINERGLPGGPQAARAAVKWAQ+HVDKDWN WTGDD T
Sbjct: 121 GPGTLLVLPFIDMSDTINERGLPGGPQAARAAVKWAQDHVDKDWNQWTGDDAT 170

[Close]
BLAST of Cp4.1LG01g12980 vs. NCBI nr
Match: gi|449434881|ref|XP_004135224.1| (PREDICTED: uncharacterized protein LOC101210245 [Cucumis sativus])

HSP 1 Score: 280.0 bits (715), Expect = 2.7e-72
Identity = 141/175 (80.57%), Postives = 150/175 (85.71%), Query Frame = 1 

Query: 1   MAWTTV-PAFHLLPPLF-ALHKPNSPPCFFSN-PSSALQHTRLSPTLRLPFQPSSSFGNQ 60
           MAWTT  P+F+LLP LF   HKP+ PP FFSN PS+ L   RLSPTL LP   SSSF   
Sbjct: 1   MAWTTTSPSFNLLPSLFFPFHKPSLPPSFFSNNPSTPL---RLSPTLTLP---SSSFPTH 60

Query: 61  ICRAAEYKFPDPIPEFAVAETEKFRAHLLTKLSKKDIYGDSVQEVVGVCTEIFNTFMHTE 120
           IC AAEYKFPDPIPEFAVAETEKFRAHLL KLSK+DIYGDS+Q+VVG+CTEIFNTFMHTE
Sbjct: 61  ICTAAEYKFPDPIPEFAVAETEKFRAHLLQKLSKRDIYGDSLQQVVGICTEIFNTFMHTE 120

Query: 121 YGGPGTLLVLPFIDMSDTINERGLPGGPQAARAAVKWAQEHVDKDWNLWTGDDGT 173
           YGGPGTLLVLPFIDMSD INERGLPGGPQAARAAVKWAQ+HVDKDWN WTGDD T
Sbjct: 121 YGGPGTLLVLPFIDMSDAINERGLPGGPQAARAAVKWAQDHVDKDWNQWTGDDAT 169

[Close]
BLAST of Cp4.1LG01g12980 vs. NCBI nr
Match: gi|225424758|ref|XP_002268027.1| (PREDICTED: uncharacterized protein LOC100260319 [Vitis vinifera])

HSP 1 Score: 228.8 bits (582), Expect = 7.2e-57
Identity = 106/134 (79.10%), Postives = 116/134 (86.57%), Query Frame = 1 

Query: 38  TRLSPTLRLPFQPSSSFGNQICRAAEYKFPDPIPEFAVAETEKFRAHLLTKLSKKDIYGD 97
           T+L P L      SSSF N ICRAAEYKFPDPIPEFA  ETEKFR HLL K SKKDIYG+
Sbjct: 59  TKLQPQLHSLVFSSSSFANHICRAAEYKFPDPIPEFAQVETEKFRTHLLNKFSKKDIYGE 118

Query: 98  SVQEVVGVCTEIFNTFMHTEYGGPGTLLVLPFIDMSDTINERGLPGGPQAARAAVKWAQE 157
           SV+EVVG+CTEIF+TF+HTEYGGPGTLLV+PFIDM+DT+NERGLPG  QAARAAVKWAQ+
Sbjct: 119 SVEEVVGICTEIFSTFLHTEYGGPGTLLVIPFIDMADTLNERGLPGS-QAARAAVKWAQD 178

Query: 158 HVDKDWNLWTGDDG 172
           HVDKDWN WTGDDG
Sbjct: 179 HVDKDWNEWTGDDG 191

[Close]
BLAST of Cp4.1LG01g12980 vs. NCBI nr
Match: gi|658052137|ref|XP_008361798.1| (PREDICTED: uncharacterized protein LOC103425493 [Malus domestica])

HSP 1 Score: 224.6 bits (571), Expect = 1.4e-55
Identity = 112/177 (63.28%), Postives = 133/177 (75.14%), Query Frame = 1 

Query: 1   MAWTTVPAFHLLPPLFALHKP--NSPPCFFSNPSSALQHTRLSPTLRLPFQPSSSF---- 60
           M W T        PL +L  P  +S P F S+ SS++   R+S T  + F  +S F    
Sbjct: 1   MXWATAA------PLLSLPXPKLHSSPSFLSSSSSSISSVRVSKTSSIHFSSASPFLSSE 60

Query: 61  GNQICRAA-EYKFPDPIPEFAVAETEKFRAHLLTKLSKKDIYGDSVQEVVGVCTEIFNTF 120
            +QICRAA EYKFPDPIP+FA AETEKFR HLL KLSKK++Y DSV+E+VG+CTEIF+TF
Sbjct: 61  KHQICRAAGEYKFPDPIPDFADAETEKFRTHLLNKLSKKEMYEDSVEEIVGICTEIFSTF 120

Query: 121 MHTEYGGPGTLLVLPFIDMSDTINERGLPGGPQAARAAVKWAQEHVDKDWNLWTGDD 171
           + TEYGGPGTLLV+PFIDM+DT+NERGLPGGPQAA AA+KWAQ HVDKDWN WTG D
Sbjct: 121 LXTEYGGPGTLLVVPFIDMADTLNERGLPGGPQAAXAAIKWAQNHVDKDWNEWTGGD 171

[Close]
BLAST of Cp4.1LG01g12980 vs. NCBI nr
Match: gi|568860563|ref|XP_006483786.1| (PREDICTED: uncharacterized protein LOC102621585 [Citrus sinensis])

HSP 1 Score: 223.0 bits (567), Expect = 4.0e-55
Identity = 98/123 (79.67%), Postives = 112/123 (91.06%), Query Frame = 1 

Query: 47  PFQPSSSFGNQICRAAEYKFPDPIPEFAVAETEKFRAHLLTKLSKKDIYGDSVQEVVGVC 106
           P   S+SF N ICRAAEYKFPDPIPEFA +ET+KFR HLL KL+KKD++GDS+++VVG+C
Sbjct: 57  PLSFSASFRNHICRAAEYKFPDPIPEFADSETQKFRTHLLNKLAKKDMFGDSLEDVVGIC 116

Query: 107 TEIFNTFMHTEYGGPGTLLVLPFIDMSDTINERGLPGGPQAARAAVKWAQEHVDKDWNLW 166
           TEIFNTF+H+EYGGPGTLLVLPFIDM+DT+NERGLPGGPQAARAAVKWAQ HVDKDW  W
Sbjct: 117 TEIFNTFLHSEYGGPGTLLVLPFIDMADTLNERGLPGGPQAARAAVKWAQRHVDKDWKEW 176

Query: 167 TGD 170
           TGD
Sbjct: 177 TGD 179

The following BLAST results are available for this feature:
BLAST of Cp4.1LG01g12980 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG01g12980 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KTS5_CUCSA1.9e-7280.57Uncharacterized protein OS=Cucumis sativus GN=Csa_5G603340 PE=4 SV=1[more]
D7TNM3_VITVI5.0e-5779.10Putative uncharacterized protein OS=Vitis vinifera GN=VIT_01s0026g00670 PE=4 SV=... [more]
V4TEK1_9ROSI6.2e-5578.86Uncharacterized protein OS=Citrus clementina GN=CICLE_v10032870mg PE=4 SV=1[more]
A0A067GV61_CITSI1.1e-5478.86Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g030190mg PE=4 SV=1[more]
A0A0D2SJG9_GOSRA5.2e-5464.53Uncharacterized protein OS=Gossypium raimondii GN=B456_005G185900 PE=4 SV=1[more]
BLAST of Cp4.1LG01g12980 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G10522.13.9e-5378.76 unknown protein[more]
BLAST of Cp4.1LG01g12980 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659090876|ref|XP_008446250.1|1.7e-7482.08PREDICTED: uncharacterized protein LOC103489037 [Cucumis melo][more]
gi|449434881|ref|XP_004135224.1|2.7e-7280.57PREDICTED: uncharacterized protein LOC101210245 [Cucumis sativus][more]
gi|225424758|ref|XP_002268027.1|7.2e-5779.10PREDICTED: uncharacterized protein LOC100260319 [Vitis vinifera][more]
gi|658052137|ref|XP_008361798.1|1.4e-5563.28PREDICTED: uncharacterized protein LOC103425493 [Malus domestica][more]
gi|568860563|ref|XP_006483786.1|4.0e-5579.67PREDICTED: uncharacterized protein LOC102621585 [Citrus sinensis][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0016310 phosphorylation
biological_process GO:0010468 regulation of gene expression
biological_process GO:0009642 response to light intensity
cellular_component GO:0042646 plastid nucleoid
molecular_function GO:0016301 kinase activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG01g12980.1Cp4.1LG01g12980.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR35987FAMILY NOT NAMEDcoord: 29..171
score: 7.1
NoneNo IPR availablePANTHERPTHR35987:SF2SUBFAMILY NOT NAMEDcoord: 29..171
score: 7.1

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG01g12980Silver-seed gourdcarcpeB0528
Cp4.1LG01g12980Silver-seed gourdcarcpeB1177
Cp4.1LG01g12980Cucumber (Chinese Long) v3cpecucB0470
Cp4.1LG01g12980Cucumber (Chinese Long) v3cpecucB0518
Cp4.1LG01g12980Wax gourdcpewgoB0562
Cp4.1LG01g12980Cucurbita pepo (Zucchini)cpecpeB346
Cp4.1LG01g12980Cucurbita pepo (Zucchini)cpecpeB375
Cp4.1LG01g12980Cucumber (Gy14) v1cgycpeB0754
Cp4.1LG01g12980Cucurbita maxima (Rimu)cmacpeB720
Cp4.1LG01g12980Cucurbita maxima (Rimu)cmacpeB726
Cp4.1LG01g12980Cucurbita moschata (Rifu)cmocpeB673
Cp4.1LG01g12980Cucurbita moschata (Rifu)cmocpeB678
Cp4.1LG01g12980Wild cucumber (PI 183967)cpecpiB415
Cp4.1LG01g12980Cucumber (Chinese Long) v2cpecuB416
Cp4.1LG01g12980Bottle gourd (USVL1VR-Ls)cpelsiB360
Cp4.1LG01g12980Watermelon (Charleston Gray)cpewcgB393
Cp4.1LG01g12980Watermelon (97103) v1cpewmB432
Cp4.1LG01g12980Watermelon (97103) v1cpewmB444
Cp4.1LG01g12980Melon (DHL92) v3.5.1cpemeB377
Cp4.1LG01g12980Cucumber (Gy14) v2cgybcpeB061
Cp4.1LG01g12980Cucumber (Gy14) v2cgybcpeB626
Cp4.1LG01g12980Melon (DHL92) v3.6.1cpemedB437
Cp4.1LG01g12980Melon (DHL92) v3.6.1cpemedB459