Cp4.1LG01g12830 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG01g12830
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionPhospholipid-transporting ATPase
LocationCp4.1LG01 : 8567392 .. 8567976 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGTGGATGGGATAGGGTTAGACAATCGAGTTCGAGATTTAGCCGCGGTAATTCTGCAATGACGGAGAGGACCTCCTCTTCTAACACGGTTCGACTTGGCCGAGTCCAGCCGCAGGCTCCTGGACATCGTACCATCTTCTGTAATGATCGCGACGCTAATCTCCTTGTCAAATTCAAGGTTTGATCATTTCTAAGTATTGTATTGATTCGTTTTTTTTTTCTTTTGGCGTCGTTGGTCACGATGTAGATGCAATGCGGACCTTGATTTGATTTGTTACAACTCTCGGAACTTGGCATTGGCTCTCAAATGTTTTTTAAGAAAGGAGTAACAAGGAGTCAAATGTTTCTCCATTTATCTTCAATCAATGCGCTCATTAGCATATCTTTAGCCAATATTGTCTAGTTTCTAACTTCATCGCATGGATTTGAATGGCTGTCAATTCGATGTTGTTTACAGGGGAATTCGGTCTCGACGACGAAGTACAACTTCTTCACTTTCTTTCCGAAAGGGTTGTTTGAACAGGTAAGTAATTTTAAGCGTCCCAGGTCTATATACTGTTTGTGGCGTTTGTTACTTCGTTAG

mRNA sequence

ATGAGTGGATGGGATAGGGTTAGACAATCGAGTTCGAGATTTAGCCGCGGTAATTCTGCAATGACGGAGAGGACCTCCTCTTCTAACACGGTTCGACTTGGCCGAGTCCAGCCGCAGGCTCCTGGACATCGTACCATCTTCTGTAATGATCGCGACGCTAATCTCCTTGTCAAATTCAAGGGGAATTCGGTCTCGACGACGAAGTACAACTTCTTCACTTTCTTTCCGAAAGGGTTGTTTGAACAGGTAAGTAATTTTAAGCGTCCCAGGTCTATATACTGTTTGTGGCGTTTGTTACTTCGTTAG

Coding sequence (CDS)

ATGAGTGGATGGGATAGGGTTAGACAATCGAGTTCGAGATTTAGCCGCGGTAATTCTGCAATGACGGAGAGGACCTCCTCTTCTAACACGGTTCGACTTGGCCGAGTCCAGCCGCAGGCTCCTGGACATCGTACCATCTTCTGTAATGATCGCGACGCTAATCTCCTTGTCAAATTCAAGGGGAATTCGGTCTCGACGACGAAGTACAACTTCTTCACTTTCTTTCCGAAAGGGTTGTTTGAACAGGTAAGTAATTTTAAGCGTCCCAGGTCTATATACTGTTTGTGGCGTTTGTTACTTCGTTAG

Protein sequence

MSGWDRVRQSSSRFSRGNSAMTERTSSSNTVRLGRVQPQAPGHRTIFCNDRDANLLVKFKGNSVSTTKYNFFTFFPKGLFEQVSNFKRPRSIYCLWRLLLR
Homology
[Close]
BLAST of Cp4.1LG01g12830 vs. Swiss-Prot
Match: ALA3_ARATH (Phospholipid-transporting ATPase 3 OS=Arabidopsis thaliana GN=ALA3 PE=1 SV=2)

HSP 1 Score: 96.3 bits (238), Expect = 2.1e-19
Identity = 51/85 (60.00%), Postives = 63/85 (74.12%), Query Frame = 1 

Query: 11 SSRFSRGNSAMTERTSSSNTVRLGRVQPQAPGHRTIFCNDRDANLLVKFKGNSVSTTKYN 70
          S  FS  +SA  +RT S  TV LG +QPQAP +RT++CNDR++N  V+FKGNS+STTKYN
Sbjct: 4  SGSFSVDSSATHQRTPS-RTVTLGHIQPQAPTYRTVYCNDRESNQPVRFKGNSISTTKYN 63

Query: 71 FFTFFPKGLFEQVSNFKRPRSIYCL 96
           FTF PKGLFEQ   F+R  +IY L
Sbjct: 64 VFTFLPKGLFEQ---FRRIANIYFL 84

[Close]
BLAST of Cp4.1LG01g12830 vs. TrEMBL
Match: A0A0A0KSH4_CUCSA (Phospholipid-transporting ATPase OS=Cucumis sativus GN=Csa_5G604040 PE=3 SV=1)

HSP 1 Score: 154.8 bits (390), Expect = 5.4e-35
Identity = 80/96 (83.33%), Postives = 85/96 (88.54%), Query Frame = 1 

Query: 1  MSGWDRVRQSSSRFSRGN-SAMTERTSSSNTVRLGRVQPQAPGHRTIFCNDRDANLLVKF 60
          MSGWDRVR SSSRF RGN SAM ERT+S+ TVRLGRVQPQAPGHRTIFCNDRDANLLVKF
Sbjct: 1  MSGWDRVRPSSSRFGRGNYSAMNERTASTTTVRLGRVQPQAPGHRTIFCNDRDANLLVKF 60

Query: 61 KGNSVSTTKYNFFTFFPKGLFEQVSNFKRPRSIYCL 96
          KGNSVSTTKYNFFTFFPKGLFEQ   F+R  ++Y L
Sbjct: 61 KGNSVSTTKYNFFTFFPKGLFEQ---FRRVANLYFL 93

[Close]
BLAST of Cp4.1LG01g12830 vs. TrEMBL
Match: W9REU4_9ROSA (Phospholipid-transporting ATPase OS=Morus notabilis GN=L484_011000 PE=3 SV=1)

HSP 1 Score: 130.2 bits (326), Expect = 1.4e-27
Identity = 68/100 (68.00%), Postives = 78/100 (78.00%), Query Frame = 1 

Query: 1   MSGWDRVRQSSSRFSR-----GNSAMTERTSSSNTVRLGRVQPQAPGHRTIFCNDRDANL 60
           MSGW+R+R S+ R  R     GN +M ER  SS TVRLGRVQPQAPGHRTI+CNDRDANL
Sbjct: 56  MSGWERLRPSTVRLGRDSNSGGNISMGERIPSSRTVRLGRVQPQAPGHRTIYCNDRDANL 115

Query: 61  LVKFKGNSVSTTKYNFFTFFPKGLFEQVSNFKRPRSIYCL 96
            VKFKGNS+STTKY+FFTF PKGLFEQ   F+R  ++Y L
Sbjct: 116 PVKFKGNSISTTKYSFFTFLPKGLFEQ---FRRVANLYFL 152

[Close]
BLAST of Cp4.1LG01g12830 vs. TrEMBL
Match: A0A067JBW1_JATCU (Phospholipid-transporting ATPase OS=Jatropha curcas GN=JCGZ_21733 PE=3 SV=1)

HSP 1 Score: 122.9 bits (307), Expect = 2.3e-25
Identity = 64/98 (65.31%), Postives = 78/98 (79.59%), Query Frame = 1 

Query: 3   GWDRVRQSSSRFSRGNSAMTERTSSSNTVRLGRVQPQAPGHRTIFCNDRDANLLVKFKGN 62
           GW+RVR S+SR +R  S +T R+S+  TVRLGRVQPQAP HRTI+CNDR+ANL V+FKGN
Sbjct: 4   GWERVRTSTSRLTRDVS-LTGRSSAGRTVRLGRVQPQAPSHRTIYCNDREANLPVRFKGN 63

Query: 63  SVSTTKYNFFTFFPKGLFEQVSNFKRPRSIYCLWRLLL 101
           S+STTKYNFFTF PKGLFEQ   F+R  + Y L+  +L
Sbjct: 64  SISTTKYNFFTFLPKGLFEQ---FRRVANCYFLFISIL 97

[Close]
BLAST of Cp4.1LG01g12830 vs. TrEMBL
Match: A0A059D981_EUCGR (Phospholipid-transporting ATPase OS=Eucalyptus grandis GN=EUGRSUZ_B03390 PE=3 SV=1)

HSP 1 Score: 122.9 bits (307), Expect = 2.3e-25
Identity = 63/95 (66.32%), Postives = 74/95 (77.89%), Query Frame = 1 

Query: 1  MSGWDRVRQSSSRFSRGNSAMTERTSSSNTVRLGRVQPQAPGHRTIFCNDRDANLLVKFK 60
          M+GW+RV+ S SRF R +S ++     S TVRLG VQPQAP HRTI+CNDRDANL VKFK
Sbjct: 1  MNGWERVKSSKSRFGR-HSHISSDDRPSRTVRLGHVQPQAPTHRTIYCNDRDANLTVKFK 60

Query: 61 GNSVSTTKYNFFTFFPKGLFEQVSNFKRPRSIYCL 96
          GNS+STTKYNFFTF PKGLFEQ   F+R  ++Y L
Sbjct: 61 GNSISTTKYNFFTFIPKGLFEQ---FRRVANLYFL 91

[Close]
BLAST of Cp4.1LG01g12830 vs. TrEMBL
Match: A0A059D8N7_EUCGR (Phospholipid-transporting ATPase OS=Eucalyptus grandis GN=EUGRSUZ_B03390 PE=3 SV=1)

HSP 1 Score: 122.9 bits (307), Expect = 2.3e-25
Identity = 63/95 (66.32%), Postives = 74/95 (77.89%), Query Frame = 1 

Query: 1  MSGWDRVRQSSSRFSRGNSAMTERTSSSNTVRLGRVQPQAPGHRTIFCNDRDANLLVKFK 60
          M+GW+RV+ S SRF R +S ++     S TVRLG VQPQAP HRTI+CNDRDANL VKFK
Sbjct: 1  MNGWERVKSSKSRFGR-HSHISSDDRPSRTVRLGHVQPQAPTHRTIYCNDRDANLTVKFK 60

Query: 61 GNSVSTTKYNFFTFFPKGLFEQVSNFKRPRSIYCL 96
          GNS+STTKYNFFTF PKGLFEQ   F+R  ++Y L
Sbjct: 61 GNSISTTKYNFFTFIPKGLFEQ---FRRVANLYFL 91

[Close]
BLAST of Cp4.1LG01g12830 vs. TAIR10
Match: AT1G59820.1 (AT1G59820.1 aminophospholipid ATPase 3)

HSP 1 Score: 96.3 bits (238), Expect = 1.2e-20
Identity = 51/85 (60.00%), Postives = 63/85 (74.12%), Query Frame = 1 

Query: 11 SSRFSRGNSAMTERTSSSNTVRLGRVQPQAPGHRTIFCNDRDANLLVKFKGNSVSTTKYN 70
          S  FS  +SA  +RT S  TV LG +QPQAP +RT++CNDR++N  V+FKGNS+STTKYN
Sbjct: 4  SGSFSVDSSATHQRTPS-RTVTLGHIQPQAPTYRTVYCNDRESNQPVRFKGNSISTTKYN 63

Query: 71 FFTFFPKGLFEQVSNFKRPRSIYCL 96
           FTF PKGLFEQ   F+R  +IY L
Sbjct: 64 VFTFLPKGLFEQ---FRRIANIYFL 84

[Close]
BLAST of Cp4.1LG01g12830 vs. NCBI nr
Match: gi|659090940|ref|XP_008446284.1| (PREDICTED: phospholipid-transporting ATPase 3 [Cucumis melo])

HSP 1 Score: 159.1 bits (401), Expect = 4.1e-36
Identity = 80/95 (84.21%), Postives = 85/95 (89.47%), Query Frame = 1 

Query: 1  MSGWDRVRQSSSRFSRGNSAMTERTSSSNTVRLGRVQPQAPGHRTIFCNDRDANLLVKFK 60
          MSGWDRVR SSSRF RGNSAM ERT+S+ TVRLGRVQPQAPGHRTIFCNDRDANLLVKFK
Sbjct: 1  MSGWDRVRPSSSRFGRGNSAMQERTASTTTVRLGRVQPQAPGHRTIFCNDRDANLLVKFK 60

Query: 61 GNSVSTTKYNFFTFFPKGLFEQVSNFKRPRSIYCL 96
          GNSVSTTKYNFFTFFPKGLFEQ   F+R  ++Y L
Sbjct: 61 GNSVSTTKYNFFTFFPKGLFEQ---FRRVANLYFL 92

[Close]
BLAST of Cp4.1LG01g12830 vs. NCBI nr
Match: gi|449434855|ref|XP_004135211.1| (PREDICTED: phospholipid-transporting ATPase 3 [Cucumis sativus])

HSP 1 Score: 154.8 bits (390), Expect = 7.8e-35
Identity = 80/96 (83.33%), Postives = 85/96 (88.54%), Query Frame = 1 

Query: 1  MSGWDRVRQSSSRFSRGN-SAMTERTSSSNTVRLGRVQPQAPGHRTIFCNDRDANLLVKF 60
          MSGWDRVR SSSRF RGN SAM ERT+S+ TVRLGRVQPQAPGHRTIFCNDRDANLLVKF
Sbjct: 1  MSGWDRVRPSSSRFGRGNYSAMNERTASTTTVRLGRVQPQAPGHRTIFCNDRDANLLVKF 60

Query: 61 KGNSVSTTKYNFFTFFPKGLFEQVSNFKRPRSIYCL 96
          KGNSVSTTKYNFFTFFPKGLFEQ   F+R  ++Y L
Sbjct: 61 KGNSVSTTKYNFFTFFPKGLFEQ---FRRVANLYFL 93

[Close]
BLAST of Cp4.1LG01g12830 vs. NCBI nr
Match: gi|700196682|gb|KGN51859.1| (hypothetical protein Csa_5G604040 [Cucumis sativus])

HSP 1 Score: 154.8 bits (390), Expect = 7.8e-35
Identity = 80/96 (83.33%), Postives = 85/96 (88.54%), Query Frame = 1 

Query: 1  MSGWDRVRQSSSRFSRGN-SAMTERTSSSNTVRLGRVQPQAPGHRTIFCNDRDANLLVKF 60
          MSGWDRVR SSSRF RGN SAM ERT+S+ TVRLGRVQPQAPGHRTIFCNDRDANLLVKF
Sbjct: 1  MSGWDRVRPSSSRFGRGNYSAMNERTASTTTVRLGRVQPQAPGHRTIFCNDRDANLLVKF 60

Query: 61 KGNSVSTTKYNFFTFFPKGLFEQVSNFKRPRSIYCL 96
          KGNSVSTTKYNFFTFFPKGLFEQ   F+R  ++Y L
Sbjct: 61 KGNSVSTTKYNFFTFFPKGLFEQ---FRRVANLYFL 93

[Close]
BLAST of Cp4.1LG01g12830 vs. NCBI nr
Match: gi|703105409|ref|XP_010098237.1| (Phospholipid-transporting ATPase 3 [Morus notabilis])

HSP 1 Score: 130.2 bits (326), Expect = 2.1e-27
Identity = 68/100 (68.00%), Postives = 78/100 (78.00%), Query Frame = 1 

Query: 1   MSGWDRVRQSSSRFSR-----GNSAMTERTSSSNTVRLGRVQPQAPGHRTIFCNDRDANL 60
           MSGW+R+R S+ R  R     GN +M ER  SS TVRLGRVQPQAPGHRTI+CNDRDANL
Sbjct: 56  MSGWERLRPSTVRLGRDSNSGGNISMGERIPSSRTVRLGRVQPQAPGHRTIYCNDRDANL 115

Query: 61  LVKFKGNSVSTTKYNFFTFFPKGLFEQVSNFKRPRSIYCL 96
            VKFKGNS+STTKY+FFTF PKGLFEQ   F+R  ++Y L
Sbjct: 116 PVKFKGNSISTTKYSFFTFLPKGLFEQ---FRRVANLYFL 152

[Close]
BLAST of Cp4.1LG01g12830 vs. NCBI nr
Match: gi|1009165372|ref|XP_015900998.1| (PREDICTED: phospholipid-transporting ATPase 3 [Ziziphus jujuba])

HSP 1 Score: 124.4 bits (311), Expect = 1.1e-25
Identity = 66/98 (67.35%), Postives = 76/98 (77.55%), Query Frame = 1 

Query: 1  MSGWDRVRQSS-SRFSRGNSAMT--ERTSSSNTVRLGRVQPQAPGHRTIFCNDRDANLLV 60
          M GWDR+R S  +R  RG+ +    ER  SS TVRLGRVQPQAPGHRTI+CNDRDANL V
Sbjct: 1  MVGWDRIRPSRPTRLGRGSDSNPRHERIPSSRTVRLGRVQPQAPGHRTIYCNDRDANLPV 60

Query: 61 KFKGNSVSTTKYNFFTFFPKGLFEQVSNFKRPRSIYCL 96
          +FKGNS+STTKYNFFTF PKGLFEQ   F+R  ++Y L
Sbjct: 61 RFKGNSISTTKYNFFTFLPKGLFEQ---FRRVANLYFL 95

The following BLAST results are available for this feature:
BLAST of Cp4.1LG01g12830 vs. Swiss-Prot
Match NameE-valueIdentityDescription
ALA3_ARATH2.1e-1960.00Phospholipid-transporting ATPase 3 OS=Arabidopsis thaliana GN=ALA3 PE=1 SV=2[more]
BLAST of Cp4.1LG01g12830 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KSH4_CUCSA5.4e-3583.33Phospholipid-transporting ATPase OS=Cucumis sativus GN=Csa_5G604040 PE=3 SV=1[more]
W9REU4_9ROSA1.4e-2768.00Phospholipid-transporting ATPase OS=Morus notabilis GN=L484_011000 PE=3 SV=1[more]
A0A067JBW1_JATCU2.3e-2565.31Phospholipid-transporting ATPase OS=Jatropha curcas GN=JCGZ_21733 PE=3 SV=1[more]
A0A059D981_EUCGR2.3e-2566.32Phospholipid-transporting ATPase OS=Eucalyptus grandis GN=EUGRSUZ_B03390 PE=3 SV... [more]
A0A059D8N7_EUCGR2.3e-2566.32Phospholipid-transporting ATPase OS=Eucalyptus grandis GN=EUGRSUZ_B03390 PE=3 SV... [more]
BLAST of Cp4.1LG01g12830 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G59820.11.2e-2060.00 aminophospholipid ATPase 3[more]
BLAST of Cp4.1LG01g12830 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659090940|ref|XP_008446284.1|4.1e-3684.21PREDICTED: phospholipid-transporting ATPase 3 [Cucumis melo][more]
gi|449434855|ref|XP_004135211.1|7.8e-3583.33PREDICTED: phospholipid-transporting ATPase 3 [Cucumis sativus][more]
gi|700196682|gb|KGN51859.1|7.8e-3583.33hypothetical protein Csa_5G604040 [Cucumis sativus][more]
gi|703105409|ref|XP_010098237.1|2.1e-2768.00Phospholipid-transporting ATPase 3 [Morus notabilis][more]
gi|1009165372|ref|XP_015900998.1|1.1e-2567.35PREDICTED: phospholipid-transporting ATPase 3 [Ziziphus jujuba][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
Vocabulary: Biological Process
TermDefinition
GO:0015914phospholipid transport
Vocabulary: Molecular Function
TermDefinition
GO:0005524ATP binding
GO:0004012phospholipid-translocating ATPase activity
GO:0000287magnesium ion binding
Vocabulary: INTERPRO
TermDefinition
IPR006539P-type_ATPase_IV
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015917 aminophospholipid transport
biological_process GO:0006812 cation transport
biological_process GO:0008152 metabolic process
biological_process GO:0045332 phospholipid translocation
biological_process GO:0015914 phospholipid transport
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0005524 ATP binding
molecular_function GO:0000287 magnesium ion binding
molecular_function GO:0004012 phospholipid-translocating ATPase activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG01g12830.1Cp4.1LG01g12830.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006539P-type ATPase, subfamily IVPANTHERPTHR24092FAMILY NOT NAMEDcoord: 8..100
score: 8.6
NoneNo IPR availablePANTHERPTHR24092:SF85PHOSPHOLIPID-TRANSPORTING ATPASE 3coord: 8..100
score: 8.6

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG01g12830Wax gourdcpewgoB0551
Cp4.1LG01g12830Wax gourdcpewgoB0568
Cp4.1LG01g12830Cucurbita pepo (Zucchini)cpecpeB346
Cp4.1LG01g12830Cucurbita pepo (Zucchini)cpecpeB375
Cp4.1LG01g12830Cucumber (Gy14) v1cgycpeB0754
Cp4.1LG01g12830Cucurbita maxima (Rimu)cmacpeB720
Cp4.1LG01g12830Cucurbita maxima (Rimu)cmacpeB726
Cp4.1LG01g12830Cucurbita moschata (Rifu)cmocpeB673
Cp4.1LG01g12830Cucurbita moschata (Rifu)cmocpeB678
Cp4.1LG01g12830Wild cucumber (PI 183967)cpecpiB415
Cp4.1LG01g12830Cucumber (Chinese Long) v2cpecuB416
Cp4.1LG01g12830Bottle gourd (USVL1VR-Ls)cpelsiB360
Cp4.1LG01g12830Watermelon (Charleston Gray)cpewcgB393
Cp4.1LG01g12830Watermelon (97103) v1cpewmB432
Cp4.1LG01g12830Watermelon (97103) v1cpewmB444
Cp4.1LG01g12830Melon (DHL92) v3.5.1cpemeB377
Cp4.1LG01g12830Cucumber (Gy14) v2cgybcpeB061
Cp4.1LG01g12830Cucumber (Gy14) v2cgybcpeB626
Cp4.1LG01g12830Melon (DHL92) v3.6.1cpemedB437
Cp4.1LG01g12830Melon (DHL92) v3.6.1cpemedB459
Cp4.1LG01g12830Silver-seed gourdcarcpeB0528
Cp4.1LG01g12830Silver-seed gourdcarcpeB1177
Cp4.1LG01g12830Cucumber (Chinese Long) v3cpecucB0470
Cp4.1LG01g12830Cucumber (Chinese Long) v3cpecucB0518